Query 022387
Match_columns 298
No_of_seqs 234 out of 2093
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2111 Uncharacterized conser 100.0 1.5E-30 3.2E-35 221.5 23.0 211 87-298 7-221 (346)
2 KOG2110 Uncharacterized conser 100.0 9E-29 2E-33 214.3 24.3 205 86-298 6-213 (391)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-29 6.1E-34 218.1 18.7 214 82-298 112-406 (480)
4 KOG0315 G-protein beta subunit 100.0 8.1E-28 1.8E-32 198.8 20.4 217 70-298 25-297 (311)
5 KOG0272 U4/U6 small nuclear ri 100.0 8.6E-29 1.9E-33 217.3 14.0 217 69-297 201-426 (459)
6 KOG0263 Transcription initiati 100.0 7E-28 1.5E-32 225.5 19.7 199 81-291 447-651 (707)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-28 6.7E-33 213.8 15.8 195 82-287 258-458 (459)
8 KOG0273 Beta-transducin family 99.9 4.6E-26 1E-30 202.5 22.0 202 84-298 234-491 (524)
9 KOG0279 G protein beta subunit 99.9 5.4E-25 1.2E-29 184.7 23.9 208 79-297 9-230 (315)
10 KOG0279 G protein beta subunit 99.9 5.3E-25 1.1E-29 184.7 21.8 204 82-298 60-271 (315)
11 KOG0295 WD40 repeat-containing 99.9 1.1E-25 2.3E-30 194.7 17.3 207 82-297 147-372 (406)
12 KOG0286 G-protein beta subunit 99.9 2.6E-24 5.6E-29 181.6 24.5 206 80-298 50-268 (343)
13 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.2E-30 185.6 16.1 198 82-292 97-300 (334)
14 KOG0291 WD40-repeat-containing 99.9 1.6E-24 3.4E-29 202.1 24.3 201 82-294 347-555 (893)
15 KOG0263 Transcription initiati 99.9 3.2E-25 6.9E-30 207.7 19.6 210 76-297 370-615 (707)
16 KOG0266 WD40 repeat-containing 99.9 2.8E-24 6.1E-29 202.3 25.4 204 82-297 156-372 (456)
17 KOG0291 WD40-repeat-containing 99.9 2.3E-24 4.9E-29 201.0 23.8 197 84-291 306-510 (893)
18 KOG0286 G-protein beta subunit 99.9 1.2E-23 2.7E-28 177.5 22.0 194 82-287 142-343 (343)
19 KOG0316 Conserved WD40 repeat- 99.9 4E-24 8.6E-29 175.8 18.1 201 82-297 14-221 (307)
20 KOG0292 Vesicle coat complex C 99.9 5.8E-24 1.3E-28 201.1 21.4 217 70-298 36-289 (1202)
21 KOG0271 Notchless-like WD40 re 99.9 2.3E-24 4.9E-29 187.7 17.1 215 69-296 183-446 (480)
22 KOG1407 WD40 repeat protein [F 99.9 4.7E-24 1E-28 177.6 17.9 206 81-297 16-269 (313)
23 KOG0293 WD40 repeat-containing 99.9 1.9E-24 4E-29 189.8 16.0 202 80-290 219-514 (519)
24 KOG0276 Vesicle coat complex C 99.9 6.7E-24 1.5E-28 194.4 19.5 204 84-297 54-265 (794)
25 KOG0643 Translation initiation 99.9 8.1E-23 1.8E-27 170.8 22.8 206 81-298 6-229 (327)
26 cd00200 WD40 WD40 domain, foun 99.9 3.1E-22 6.7E-27 172.8 27.5 204 82-297 6-215 (289)
27 KOG0285 Pleiotropic regulator 99.9 4E-23 8.7E-28 178.6 18.2 207 77-296 143-355 (460)
28 KOG0265 U5 snRNP-specific prot 99.9 1.3E-22 2.8E-27 172.0 19.4 198 80-290 42-247 (338)
29 KOG0640 mRNA cleavage stimulat 99.9 6.3E-23 1.4E-27 174.7 17.1 208 82-298 109-344 (430)
30 PTZ00421 coronin; Provisional 99.9 2.4E-21 5.2E-26 182.8 29.6 205 81-296 71-297 (493)
31 KOG0284 Polyadenylation factor 99.9 1.1E-23 2.3E-28 184.7 11.4 202 85-298 96-303 (464)
32 KOG0284 Polyadenylation factor 99.9 1.2E-23 2.6E-28 184.3 11.1 209 69-288 164-379 (464)
33 KOG0266 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 183.9 25.4 203 82-296 200-416 (456)
34 KOG0282 mRNA splicing factor [ 99.9 2.2E-23 4.7E-28 186.1 11.1 198 80-287 209-503 (503)
35 cd00200 WD40 WD40 domain, foun 99.9 1.7E-20 3.7E-25 161.9 27.6 203 83-297 49-257 (289)
36 PTZ00420 coronin; Provisional 99.9 2E-20 4.3E-25 177.9 30.1 203 81-292 70-296 (568)
37 PLN00181 protein SPA1-RELATED; 99.9 1.3E-20 2.8E-25 189.0 29.1 196 83-290 481-691 (793)
38 KOG0318 WD40 repeat stress pro 99.9 5E-21 1.1E-25 172.7 23.2 209 80-297 54-273 (603)
39 PLN00181 protein SPA1-RELATED; 99.9 1.2E-20 2.6E-25 189.3 28.6 197 85-294 532-743 (793)
40 KOG0645 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 155.9 25.7 200 79-289 8-225 (312)
41 KOG0295 WD40 repeat-containing 99.9 4.5E-21 9.8E-26 166.2 20.4 195 82-288 190-405 (406)
42 KOG0274 Cdc4 and related F-box 99.9 4.8E-21 1E-25 181.5 22.1 200 81-297 245-449 (537)
43 KOG0645 WD40 repeat protein [G 99.9 4.6E-20 1E-24 154.6 24.1 197 81-289 57-311 (312)
44 KOG0265 U5 snRNP-specific prot 99.9 8.3E-21 1.8E-25 161.0 19.0 201 76-285 81-334 (338)
45 KOG0647 mRNA export protein (c 99.9 1.3E-20 2.8E-25 160.0 19.8 206 81-297 68-289 (347)
46 KOG0273 Beta-transducin family 99.9 3.1E-20 6.7E-25 165.6 23.1 200 79-289 270-523 (524)
47 KOG0281 Beta-TrCP (transducin 99.9 6.9E-22 1.5E-26 170.5 11.6 193 80-292 232-431 (499)
48 KOG0319 WD40-repeat-containing 99.9 4.8E-21 1E-25 178.5 17.5 206 80-297 360-585 (775)
49 KOG0281 Beta-TrCP (transducin 99.9 3E-22 6.5E-27 172.8 8.4 190 86-295 198-394 (499)
50 KOG0276 Vesicle coat complex C 99.9 9.5E-21 2.1E-25 173.9 18.6 203 84-297 12-223 (794)
51 KOG0289 mRNA splicing factor [ 99.9 1.2E-20 2.7E-25 166.7 18.3 204 84-297 218-427 (506)
52 KOG0650 WD40 repeat nucleolar 99.9 4.9E-21 1.1E-25 175.0 15.7 225 55-287 372-678 (733)
53 KOG0641 WD40 repeat protein [G 99.9 2.6E-19 5.6E-24 146.8 24.2 204 77-289 81-303 (350)
54 KOG0319 WD40-repeat-containing 99.9 1.5E-20 3.3E-25 175.3 18.5 202 78-290 404-620 (775)
55 KOG0296 Angio-associated migra 99.9 6.4E-20 1.4E-24 159.2 21.1 209 79-298 100-365 (399)
56 KOG0310 Conserved WD40 repeat- 99.9 6.4E-20 1.4E-24 164.2 19.9 199 86-297 69-276 (487)
57 KOG1036 Mitotic spindle checkp 99.9 6.6E-20 1.4E-24 156.1 18.9 202 82-297 51-270 (323)
58 KOG0315 G-protein beta subunit 99.9 9.8E-20 2.1E-24 151.1 19.4 181 99-291 12-247 (311)
59 KOG0306 WD40-repeat-containing 99.9 5.8E-20 1.3E-24 171.7 20.0 205 82-297 370-630 (888)
60 KOG4283 Transcription-coupled 99.9 7.4E-20 1.6E-24 155.1 18.3 206 79-293 37-280 (397)
61 KOG0274 Cdc4 and related F-box 99.8 1.2E-19 2.7E-24 171.9 21.9 197 84-297 207-409 (537)
62 KOG0283 WD40 repeat-containing 99.8 6.2E-20 1.3E-24 173.6 19.5 203 80-297 262-540 (712)
63 KOG0277 Peroxisomal targeting 99.8 5.8E-20 1.3E-24 152.8 14.8 203 80-292 55-268 (311)
64 KOG0316 Conserved WD40 repeat- 99.8 2.1E-19 4.6E-24 148.1 17.8 215 69-297 43-265 (307)
65 KOG0275 Conserved WD40 repeat- 99.8 3.4E-21 7.4E-26 165.0 7.2 172 82-298 210-387 (508)
66 KOG0292 Vesicle coat complex C 99.8 1E-19 2.2E-24 172.7 17.2 196 85-292 9-239 (1202)
67 KOG1446 Histone H3 (Lys4) meth 99.8 5.6E-18 1.2E-22 144.8 25.7 201 85-297 14-270 (311)
68 KOG0318 WD40 repeat stress pro 99.8 1.9E-18 4E-23 156.2 23.9 198 82-291 187-394 (603)
69 KOG0772 Uncharacterized conser 99.8 8.2E-19 1.8E-23 158.2 20.8 200 82-292 164-397 (641)
70 KOG0288 WD40 repeat protein Ti 99.8 1.4E-19 3.1E-24 159.1 14.7 203 82-297 216-425 (459)
71 KOG0646 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 156.8 18.9 201 84-297 80-315 (476)
72 KOG0305 Anaphase promoting com 99.8 5.1E-19 1.1E-23 163.1 18.1 196 85-290 217-462 (484)
73 KOG0285 Pleiotropic regulator 99.8 1.3E-18 2.8E-23 150.8 19.1 195 82-289 232-439 (460)
74 KOG0294 WD40 repeat-containing 99.8 4E-18 8.7E-23 145.7 20.8 196 82-291 80-283 (362)
75 KOG0308 Conserved WD40 repeat- 99.8 2.5E-19 5.3E-24 165.3 12.8 198 90-298 29-252 (735)
76 KOG2096 WD40 repeat protein [G 99.8 1.9E-18 4.1E-23 147.9 17.0 198 80-289 81-308 (420)
77 KOG0643 Translation initiation 99.8 5.6E-18 1.2E-22 141.9 19.3 216 67-290 34-318 (327)
78 KOG1408 WD40 repeat protein [F 99.8 1.6E-18 3.4E-23 161.4 17.5 199 82-290 456-714 (1080)
79 PTZ00421 coronin; Provisional 99.8 3.8E-17 8.2E-22 154.4 26.5 156 126-292 74-248 (493)
80 KOG0289 mRNA splicing factor [ 99.8 2.1E-17 4.6E-22 146.4 22.8 204 76-288 294-505 (506)
81 KOG0973 Histone transcription 99.8 7E-18 1.5E-22 163.5 21.2 203 81-292 65-358 (942)
82 KOG0268 Sof1-like rRNA process 99.8 8.6E-19 1.9E-23 152.1 12.1 197 82-292 63-305 (433)
83 KOG0299 U3 snoRNP-associated p 99.8 7.7E-18 1.7E-22 150.1 18.4 195 83-291 200-412 (479)
84 KOG0313 Microtubule binding pr 99.8 1.6E-17 3.5E-22 145.0 20.1 195 82-289 190-418 (423)
85 PTZ00420 coronin; Provisional 99.8 1.1E-16 2.4E-21 152.6 26.5 175 108-295 56-255 (568)
86 KOG0305 Anaphase promoting com 99.8 1.6E-17 3.4E-22 153.3 19.0 195 89-296 181-383 (484)
87 KOG0299 U3 snoRNP-associated p 99.8 1.2E-17 2.7E-22 148.8 16.6 207 79-297 136-364 (479)
88 KOG0640 mRNA cleavage stimulat 99.8 1.6E-17 3.6E-22 141.8 16.5 195 85-289 216-426 (430)
89 KOG0277 Peroxisomal targeting 99.8 4.9E-17 1.1E-21 135.5 17.4 197 87-292 10-224 (311)
90 KOG0264 Nucleosome remodeling 99.8 7.1E-17 1.5E-21 143.7 19.6 199 82-290 121-348 (422)
91 KOG0310 Conserved WD40 repeat- 99.8 1.9E-16 4.1E-21 142.1 21.8 194 82-286 107-306 (487)
92 KOG0306 WD40-repeat-containing 99.8 7.4E-17 1.6E-21 151.1 19.8 202 80-294 449-669 (888)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.1E-15 4.6E-20 133.0 28.3 202 87-297 74-287 (300)
94 KOG0269 WD40 repeat-containing 99.8 1.2E-17 2.7E-22 156.7 14.5 197 86-292 40-253 (839)
95 KOG0267 Microtubule severing p 99.8 2E-18 4.4E-23 160.9 8.7 200 83-294 26-231 (825)
96 KOG0639 Transducin-like enhanc 99.7 2.7E-16 5.9E-21 141.7 21.1 204 82-296 416-670 (705)
97 KOG0313 Microtubule binding pr 99.7 1.8E-16 3.9E-21 138.5 19.3 200 81-292 140-379 (423)
98 KOG1273 WD40 repeat protein [G 99.7 1.9E-16 4.1E-21 135.6 18.9 190 88-289 26-226 (405)
99 KOG0269 WD40 repeat-containing 99.7 7.8E-18 1.7E-22 158.1 10.9 193 87-291 89-298 (839)
100 KOG0288 WD40 repeat protein Ti 99.7 6.4E-17 1.4E-21 142.6 15.9 205 69-286 245-458 (459)
101 KOG0296 Angio-associated migra 99.7 1.5E-15 3.2E-20 132.2 23.1 204 80-295 59-269 (399)
102 KOG0302 Ribosome Assembly prot 99.7 8.7E-16 1.9E-20 134.2 18.5 196 83-290 149-379 (440)
103 KOG0283 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 144.2 21.1 198 81-289 365-576 (712)
104 KOG0275 Conserved WD40 repeat- 99.7 1.5E-16 3.3E-21 136.6 13.0 206 82-297 260-475 (508)
105 KOG0282 mRNA splicing factor [ 99.7 5E-17 1.1E-21 145.7 10.4 159 126-294 213-377 (503)
106 KOG0647 mRNA export protein (c 99.7 2.3E-15 5E-20 128.2 19.1 199 78-291 20-230 (347)
107 KOG0270 WD40 repeat-containing 99.7 8.7E-16 1.9E-20 136.5 16.1 203 82-294 240-454 (463)
108 KOG1446 Histone H3 (Lys4) meth 99.7 1.4E-14 3.1E-19 124.1 22.4 195 82-290 97-304 (311)
109 KOG1539 WD repeat protein [Gen 99.7 1.8E-15 3.8E-20 143.4 18.4 195 86-290 449-649 (910)
110 KOG0267 Microtubule severing p 99.7 5.9E-17 1.3E-21 151.2 8.0 182 99-298 6-193 (825)
111 KOG0646 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 135.3 16.5 189 70-269 108-330 (476)
112 KOG0278 Serine/threonine kinas 99.7 1.2E-15 2.6E-20 127.0 14.2 201 82-297 11-262 (334)
113 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 5.3E-14 1.2E-18 124.1 25.8 188 97-297 1-195 (300)
114 KOG0264 Nucleosome remodeling 99.7 2E-15 4.4E-20 134.4 16.5 198 82-289 174-404 (422)
115 KOG1274 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 138.6 23.0 202 80-290 8-263 (933)
116 KOG2055 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 134.1 16.1 204 84-297 256-475 (514)
117 KOG1272 WD40-repeat-containing 99.7 1.6E-16 3.5E-21 142.0 8.2 196 87-297 131-331 (545)
118 KOG1332 Vesicle coat complex C 99.7 2.2E-15 4.7E-20 125.1 13.0 201 80-289 6-241 (299)
119 KOG0268 Sof1-like rRNA process 99.7 3.5E-15 7.6E-20 129.9 14.7 206 70-290 94-346 (433)
120 KOG0270 WD40 repeat-containing 99.6 4.4E-15 9.5E-20 132.1 15.2 134 154-290 264-405 (463)
121 KOG0300 WD40 repeat-containing 99.6 1.3E-14 2.8E-19 124.6 17.4 205 75-292 180-431 (481)
122 KOG0300 WD40 repeat-containing 99.6 2.6E-14 5.6E-19 122.7 19.1 197 82-291 269-478 (481)
123 KOG0308 Conserved WD40 repeat- 99.6 5.9E-15 1.3E-19 136.6 15.7 197 83-290 71-286 (735)
124 KOG2048 WD40 repeat protein [G 99.6 1.5E-13 3.2E-18 128.0 24.5 202 84-297 24-241 (691)
125 KOG0641 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 113.0 21.8 195 82-289 133-349 (350)
126 KOG0301 Phospholipase A2-activ 99.6 1.9E-14 4.1E-19 134.2 18.3 194 76-290 92-289 (745)
127 KOG0321 WD40 repeat-containing 99.6 1.1E-14 2.5E-19 134.5 16.4 204 80-291 139-393 (720)
128 KOG1007 WD repeat protein TSSC 99.6 2E-14 4.3E-19 122.0 16.3 195 84-289 122-361 (370)
129 KOG2445 Nuclear pore complex c 99.6 1.3E-13 2.7E-18 118.0 21.3 199 80-289 8-318 (361)
130 KOG1539 WD repeat protein [Gen 99.6 3.5E-14 7.5E-19 134.7 19.4 198 87-296 397-613 (910)
131 KOG0307 Vesicle coat complex C 99.6 1.8E-15 3.8E-20 147.7 10.8 202 87-297 66-292 (1049)
132 KOG0973 Histone transcription 99.6 2.1E-14 4.5E-19 139.6 17.9 179 84-294 12-206 (942)
133 KOG1274 WD40 repeat protein [G 99.6 4.8E-14 1E-18 135.0 19.7 175 87-273 98-285 (933)
134 KOG1407 WD40 repeat protein [F 99.6 1.6E-13 3.4E-18 115.1 20.3 195 82-290 61-312 (313)
135 KOG0294 WD40 repeat-containing 99.6 1.3E-13 2.7E-18 118.3 19.8 200 81-297 39-245 (362)
136 KOG0771 Prolactin regulatory e 99.6 2.5E-14 5.3E-19 126.7 14.3 189 89-290 148-355 (398)
137 KOG0301 Phospholipase A2-activ 99.6 6.7E-14 1.5E-18 130.5 17.5 193 82-289 11-249 (745)
138 KOG2106 Uncharacterized conser 99.6 7.1E-13 1.5E-17 119.9 23.0 187 86-291 247-479 (626)
139 KOG4378 Nuclear protein COP1 [ 99.6 6.5E-14 1.4E-18 126.3 14.8 193 89-292 83-283 (673)
140 KOG0322 G-protein beta subunit 99.6 5.3E-14 1.1E-18 118.1 13.2 61 226-288 261-322 (323)
141 KOG0303 Actin-binding protein 99.6 5.9E-13 1.3E-17 117.2 20.4 205 76-293 72-298 (472)
142 KOG2096 WD40 repeat protein [G 99.6 3.7E-13 8E-18 115.7 18.6 199 80-291 182-404 (420)
143 KOG0307 Vesicle coat complex C 99.6 1.5E-14 3.4E-19 141.2 10.5 201 82-292 113-330 (1049)
144 KOG4328 WD40 protein [Function 99.5 1.2E-13 2.6E-18 123.4 14.4 198 82-289 183-399 (498)
145 KOG1332 Vesicle coat complex C 99.5 1.8E-13 3.8E-18 113.8 13.9 203 80-289 51-286 (299)
146 KOG1408 WD40 repeat protein [F 99.5 5.2E-13 1.1E-17 125.1 17.8 207 81-291 74-412 (1080)
147 KOG0302 Ribosome Assembly prot 99.5 5.6E-13 1.2E-17 116.8 16.8 194 82-287 208-436 (440)
148 KOG2048 WD40 repeat protein [G 99.5 4.8E-12 1E-16 118.0 23.4 197 82-291 66-277 (691)
149 KOG1036 Mitotic spindle checkp 99.5 2E-12 4.3E-17 110.7 19.2 193 81-290 9-208 (323)
150 KOG1007 WD repeat protein TSSC 99.5 4.2E-13 9.2E-18 114.0 14.5 200 80-290 58-290 (370)
151 KOG2106 Uncharacterized conser 99.5 3.1E-12 6.7E-17 115.8 20.6 196 81-287 100-314 (626)
152 KOG0290 Conserved WD40 repeat- 99.5 1.3E-12 2.8E-17 111.2 16.4 201 82-291 93-320 (364)
153 KOG0639 Transducin-like enhanc 99.5 1.6E-13 3.4E-18 124.1 11.4 162 126-297 418-589 (705)
154 KOG4378 Nuclear protein COP1 [ 99.5 3E-12 6.4E-17 115.8 18.7 178 82-270 118-305 (673)
155 KOG4283 Transcription-coupled 99.5 2.5E-12 5.5E-17 109.6 16.4 161 126-295 42-226 (397)
156 KOG0293 WD40 repeat-containing 99.5 1.6E-12 3.6E-17 115.1 15.7 115 126-250 223-345 (519)
157 KOG0772 Uncharacterized conser 99.5 1.4E-12 3.1E-17 118.3 15.5 195 82-287 265-485 (641)
158 KOG0642 Cell-cycle nuclear pro 99.5 6.7E-13 1.4E-17 121.4 13.4 208 80-297 339-569 (577)
159 KOG2055 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 115.9 16.0 191 86-289 304-512 (514)
160 KOG2919 Guanine nucleotide-bin 99.5 2.7E-12 5.9E-17 110.6 15.4 184 87-278 160-360 (406)
161 KOG0650 WD40 repeat nucleolar 99.5 6.7E-13 1.4E-17 122.2 12.1 192 80-286 516-732 (733)
162 KOG1034 Transcriptional repres 99.4 1.2E-12 2.6E-17 113.0 12.1 198 82-288 132-382 (385)
163 COG2319 FOG: WD40 repeat [Gene 99.4 2.1E-10 4.6E-15 103.4 27.5 205 80-293 60-275 (466)
164 PRK01742 tolB translocation pr 99.4 2.6E-11 5.5E-16 113.8 21.5 198 83-297 201-411 (429)
165 KOG2919 Guanine nucleotide-bin 99.4 1.9E-11 4.1E-16 105.5 18.4 198 85-291 49-283 (406)
166 PRK11028 6-phosphogluconolacto 99.4 2.1E-10 4.6E-15 103.7 26.0 200 87-293 81-310 (330)
167 COG2319 FOG: WD40 repeat [Gene 99.4 2.7E-10 5.8E-15 102.8 26.4 198 87-296 111-321 (466)
168 KOG1188 WD40 repeat protein [G 99.4 1E-11 2.2E-16 107.7 16.0 186 98-294 41-247 (376)
169 KOG3881 Uncharacterized conser 99.4 3.4E-11 7.4E-16 106.1 17.9 202 84-296 104-327 (412)
170 KOG0321 WD40 repeat-containing 99.4 1.9E-11 4.2E-16 113.4 16.7 204 79-292 94-350 (720)
171 KOG1063 RNA polymerase II elon 99.4 5E-11 1.1E-15 111.6 19.5 206 77-291 46-299 (764)
172 KOG2110 Uncharacterized conser 99.4 2.4E-10 5.3E-15 100.2 22.5 187 87-291 48-250 (391)
173 KOG1063 RNA polymerase II elon 99.4 2.5E-11 5.4E-16 113.6 16.2 201 79-289 519-763 (764)
174 KOG4227 WD40 repeat protein [G 99.4 6.7E-11 1.4E-15 104.4 17.9 114 82-202 53-179 (609)
175 KOG0649 WD40 repeat protein [G 99.3 3.2E-11 7E-16 100.5 14.1 139 154-296 30-193 (325)
176 KOG1963 WD40 repeat protein [G 99.3 9.4E-11 2E-15 112.3 18.8 190 91-292 22-284 (792)
177 PF08662 eIF2A: Eukaryotic tra 99.3 3.5E-10 7.6E-15 94.6 20.1 133 157-297 38-186 (194)
178 KOG2111 Uncharacterized conser 99.3 8.4E-10 1.8E-14 95.2 22.5 169 107-291 76-258 (346)
179 KOG1445 Tumor-specific antigen 99.3 6.4E-11 1.4E-15 110.1 16.2 135 155-292 602-753 (1012)
180 KOG1240 Protein kinase contain 99.3 2.6E-10 5.6E-15 112.8 21.2 206 82-297 1045-1281(1431)
181 KOG1009 Chromatin assembly com 99.3 9.7E-11 2.1E-15 103.7 16.6 96 82-184 62-174 (434)
182 KOG0303 Actin-binding protein 99.3 2.5E-11 5.4E-16 107.1 12.7 130 126-296 80-210 (472)
183 KOG1587 Cytoplasmic dynein int 99.3 1.2E-10 2.5E-15 110.6 18.2 201 80-291 237-474 (555)
184 KOG1034 Transcriptional repres 99.3 1.4E-10 3.1E-15 100.3 17.0 94 194-290 115-212 (385)
185 KOG0644 Uncharacterized conser 99.3 3.4E-12 7.5E-17 121.4 7.5 205 82-297 187-434 (1113)
186 PRK11028 6-phosphogluconolacto 99.3 2.3E-09 4.9E-14 97.0 25.6 194 87-290 36-259 (330)
187 KOG1273 WD40 repeat protein [G 99.3 5E-10 1.1E-14 96.5 19.8 204 82-296 62-287 (405)
188 KOG1517 Guanine nucleotide bin 99.3 1.8E-10 4E-15 112.4 18.9 195 87-291 1066-1289(1387)
189 KOG1188 WD40 repeat protein [G 99.3 6.7E-11 1.4E-15 102.7 13.5 135 154-290 48-197 (376)
190 KOG1517 Guanine nucleotide bin 99.3 3.1E-10 6.8E-15 110.8 19.5 198 82-290 1106-1334(1387)
191 KOG1963 WD40 repeat protein [G 99.3 5.1E-10 1.1E-14 107.4 20.0 199 80-290 246-539 (792)
192 KOG0649 WD40 repeat protein [G 99.3 6.7E-10 1.4E-14 92.7 17.6 194 87-297 12-243 (325)
193 KOG1310 WD40 repeat protein [G 99.3 1E-10 2.2E-15 107.1 13.6 206 82-297 47-311 (758)
194 PRK03629 tolB translocation pr 99.3 3.5E-09 7.6E-14 99.3 24.2 199 84-293 197-409 (429)
195 KOG1538 Uncharacterized conser 99.2 2.9E-10 6.3E-15 106.3 16.4 186 87-287 14-209 (1081)
196 KOG2445 Nuclear pore complex c 99.2 8.3E-10 1.8E-14 94.9 17.3 155 126-290 12-257 (361)
197 KOG1523 Actin-related protein 99.2 1.6E-09 3.4E-14 93.6 18.7 198 85-291 10-238 (361)
198 KOG2321 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 101.0 18.5 197 84-294 50-263 (703)
199 KOG1538 Uncharacterized conser 99.2 1.3E-09 2.7E-14 102.1 19.0 202 81-290 49-294 (1081)
200 PRK04922 tolB translocation pr 99.2 6.2E-09 1.3E-13 97.8 23.7 198 84-291 202-413 (433)
201 PRK05137 tolB translocation pr 99.2 2.6E-08 5.6E-13 93.7 25.8 201 83-293 199-416 (435)
202 KOG2394 WD40 protein DMR-N9 [G 99.2 1.3E-09 2.8E-14 99.7 15.8 141 154-296 193-369 (636)
203 PRK02889 tolB translocation pr 99.1 2.2E-08 4.7E-13 93.9 23.6 185 83-280 193-392 (427)
204 KOG4328 WD40 protein [Function 99.1 1.5E-09 3.1E-14 97.7 14.7 209 78-297 227-458 (498)
205 PF08662 eIF2A: Eukaryotic tra 99.1 1.7E-08 3.8E-13 84.4 20.1 153 89-252 9-184 (194)
206 KOG1524 WD40 repeat-containing 99.1 1.4E-09 3E-14 99.6 12.8 178 99-291 78-257 (737)
207 KOG0771 Prolactin regulatory e 99.1 2.2E-09 4.7E-14 95.6 13.5 157 131-295 148-317 (398)
208 PF02239 Cytochrom_D1: Cytochr 99.1 1.4E-07 3E-12 86.6 25.8 201 89-297 40-355 (369)
209 KOG1334 WD40 repeat protein [G 99.1 1E-09 2.2E-14 99.4 11.2 81 210-292 387-469 (559)
210 KOG4497 Uncharacterized conser 99.1 2.2E-09 4.7E-14 93.2 12.7 195 90-297 13-248 (447)
211 KOG0882 Cyclophilin-related pe 99.0 1.4E-09 3E-14 97.8 10.1 209 78-297 2-239 (558)
212 KOG1524 WD40 repeat-containing 99.0 5E-09 1.1E-13 96.1 13.7 176 82-283 101-281 (737)
213 TIGR02800 propeller_TolB tol-p 99.0 1.5E-07 3.3E-12 87.7 24.4 201 84-295 188-402 (417)
214 KOG0290 Conserved WD40 repeat- 99.0 3.9E-08 8.6E-13 84.2 18.1 190 81-279 146-357 (364)
215 KOG1009 Chromatin assembly com 99.0 4E-09 8.6E-14 93.6 12.4 178 85-295 13-201 (434)
216 PRK01742 tolB translocation pr 99.0 3.3E-08 7.1E-13 92.8 19.1 174 107-294 185-366 (429)
217 PRK00178 tolB translocation pr 99.0 2.4E-07 5.2E-12 86.9 24.8 198 83-290 196-407 (430)
218 KOG1587 Cytoplasmic dynein int 99.0 2.1E-08 4.6E-13 95.4 16.8 203 78-290 284-517 (555)
219 KOG4547 WD40 repeat-containing 99.0 3.1E-08 6.6E-13 91.8 17.3 148 139-297 5-180 (541)
220 PRK04922 tolB translocation pr 99.0 1.1E-07 2.4E-12 89.4 21.2 176 108-293 186-372 (433)
221 PRK04792 tolB translocation pr 99.0 2.4E-07 5.2E-12 87.4 23.4 200 85-295 217-430 (448)
222 PF02239 Cytochrom_D1: Cytochr 99.0 9.6E-07 2.1E-11 81.1 26.5 189 98-295 6-208 (369)
223 PF00400 WD40: WD domain, G-be 99.0 1.5E-09 3.3E-14 65.9 5.4 37 250-287 3-39 (39)
224 KOG0642 Cell-cycle nuclear pro 99.0 7.1E-09 1.5E-13 95.4 12.0 208 80-297 289-527 (577)
225 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.7E-06 3.7E-11 78.3 27.1 198 93-297 53-338 (352)
226 KOG0644 Uncharacterized conser 98.9 1.4E-09 2.9E-14 104.1 6.5 199 79-293 226-472 (1113)
227 PF10282 Lactonase: Lactonase, 98.9 4.5E-06 9.8E-11 76.1 29.1 203 86-294 87-329 (345)
228 PRK03629 tolB translocation pr 98.9 3.4E-07 7.4E-12 85.9 22.0 177 108-293 181-367 (429)
229 KOG1354 Serine/threonine prote 98.9 2.5E-08 5.5E-13 87.1 12.8 201 86-297 26-310 (433)
230 KOG2321 WD40 repeat protein [G 98.9 5.3E-08 1.2E-12 90.1 15.3 191 87-289 135-343 (703)
231 PRK02889 tolB translocation pr 98.9 4.8E-07 1E-11 84.9 22.1 159 127-293 195-364 (427)
232 PRK05137 tolB translocation pr 98.9 6.2E-07 1.3E-11 84.4 22.7 176 108-292 184-369 (435)
233 TIGR02800 propeller_TolB tol-p 98.8 1.1E-06 2.3E-11 82.0 22.7 159 127-293 189-358 (417)
234 KOG1445 Tumor-specific antigen 98.8 4.2E-08 9E-13 91.7 11.8 189 92-290 586-799 (1012)
235 KOG2139 WD40 repeat protein [G 98.8 3.9E-07 8.4E-12 80.3 17.2 192 84-289 97-309 (445)
236 KOG2315 Predicted translation 98.8 1.6E-06 3.4E-11 80.3 21.7 204 83-296 163-396 (566)
237 PRK01029 tolB translocation pr 98.8 4.5E-06 9.8E-11 78.3 25.5 201 86-293 185-407 (428)
238 KOG1064 RAVE (regulator of V-A 98.8 5.2E-08 1.1E-12 100.0 11.8 189 85-297 2208-2406(2439)
239 KOG3914 WD repeat protein WDR4 98.7 2.6E-07 5.7E-12 82.2 13.2 83 210-297 147-231 (390)
240 KOG4547 WD40 repeat-containing 98.7 1.9E-06 4.2E-11 80.1 19.0 183 95-290 3-221 (541)
241 KOG2139 WD40 repeat protein [G 98.7 3.9E-07 8.5E-12 80.3 13.5 153 127-288 98-267 (445)
242 PF15492 Nbas_N: Neuroblastoma 98.7 2.7E-05 5.9E-10 67.0 23.3 198 91-297 3-267 (282)
243 KOG2314 Translation initiation 98.7 2.2E-06 4.7E-11 79.4 17.7 84 88-174 213-300 (698)
244 KOG2394 WD40 protein DMR-N9 [G 98.7 7.2E-07 1.6E-11 82.1 14.3 112 177-292 292-455 (636)
245 KOG4532 WD40-like repeat conta 98.6 4.4E-06 9.5E-11 71.1 17.8 196 89-294 71-287 (344)
246 KOG1272 WD40-repeat-containing 98.6 3.2E-08 6.9E-13 89.4 4.8 185 86-287 171-360 (545)
247 KOG1523 Actin-related protein 98.6 1.4E-06 3E-11 75.7 14.5 151 127-288 10-175 (361)
248 PLN02919 haloacid dehalogenase 98.6 4.4E-05 9.5E-10 79.1 27.7 195 87-293 625-892 (1057)
249 PF13360 PQQ_2: PQQ-like domai 98.6 5.8E-05 1.3E-09 64.5 24.1 185 96-297 35-238 (238)
250 KOG0974 WD-repeat protein WDR6 98.6 2.6E-06 5.6E-11 83.8 17.1 189 90-291 92-290 (967)
251 KOG4227 WD40 repeat protein [G 98.6 2.7E-06 5.8E-11 75.8 15.5 157 126-291 55-227 (609)
252 PF10282 Lactonase: Lactonase, 98.6 0.00029 6.3E-09 64.2 29.0 195 87-289 38-275 (345)
253 KOG0974 WD-repeat protein WDR6 98.6 1.9E-06 4.1E-11 84.8 14.9 150 134-297 94-253 (967)
254 PRK04792 tolB translocation pr 98.6 2E-05 4.4E-10 74.4 21.7 160 127-293 217-386 (448)
255 PRK00178 tolB translocation pr 98.5 4.2E-05 9.1E-10 71.8 23.0 160 127-293 198-367 (430)
256 KOG1354 Serine/threonine prote 98.5 9.5E-06 2.1E-10 71.3 16.9 207 32-246 103-358 (433)
257 PRK04043 tolB translocation pr 98.5 9E-05 2E-09 69.3 24.7 192 87-290 189-401 (419)
258 KOG1240 Protein kinase contain 98.5 3.7E-06 8E-11 84.1 15.4 150 137-296 1059-1232(1431)
259 COG4946 Uncharacterized protei 98.5 7.1E-05 1.5E-09 68.5 22.1 123 76-207 350-482 (668)
260 KOG1310 WD40 repeat protein [G 98.5 8.2E-07 1.8E-11 82.0 9.9 118 171-290 45-179 (758)
261 KOG1409 Uncharacterized conser 98.5 1E-05 2.2E-10 71.1 15.3 196 85-292 68-273 (404)
262 KOG0280 Uncharacterized conser 98.4 6.3E-06 1.4E-10 71.0 13.6 138 154-294 93-247 (339)
263 COG5170 CDC55 Serine/threonine 98.4 3.8E-06 8.3E-11 72.9 12.3 201 85-296 26-317 (460)
264 COG2706 3-carboxymuconate cycl 98.4 0.00026 5.6E-09 62.8 23.7 201 87-293 90-327 (346)
265 KOG1064 RAVE (regulator of V-A 98.4 1.7E-06 3.6E-11 89.4 10.5 139 154-298 2228-2375(2439)
266 KOG4497 Uncharacterized conser 98.4 8.2E-05 1.8E-09 65.2 18.7 202 82-290 88-392 (447)
267 KOG0322 G-protein beta subunit 98.3 6.7E-06 1.5E-10 69.8 11.0 153 84-246 149-322 (323)
268 COG5354 Uncharacterized protei 98.3 4.6E-05 1E-09 70.1 17.0 113 86-201 33-159 (561)
269 PF07433 DUF1513: Protein of u 98.3 0.00092 2E-08 59.1 24.0 206 87-296 6-254 (305)
270 COG4946 Uncharacterized protei 98.3 0.00023 5E-09 65.2 20.4 172 93-277 327-507 (668)
271 KOG3881 Uncharacterized conser 98.3 3.3E-05 7.1E-10 68.9 14.5 201 86-296 56-284 (412)
272 PF03178 CPSF_A: CPSF A subuni 98.3 0.00044 9.5E-09 62.4 22.3 179 107-289 3-202 (321)
273 COG2706 3-carboxymuconate cycl 98.3 0.0014 3.1E-08 58.2 24.4 197 86-290 40-275 (346)
274 PRK01029 tolB translocation pr 98.3 0.0002 4.4E-09 67.2 20.6 158 131-294 188-364 (428)
275 KOG2695 WD40 repeat protein [G 98.2 7.8E-06 1.7E-10 71.9 9.5 167 90-267 216-401 (425)
276 KOG2315 Predicted translation 98.2 0.00085 1.8E-08 62.6 22.9 79 215-297 271-352 (566)
277 KOG1275 PAB-dependent poly(A) 98.2 5.3E-05 1.2E-09 74.1 14.9 179 97-289 147-342 (1118)
278 KOG0309 Conserved WD40 repeat- 98.2 1.7E-05 3.6E-10 75.9 10.7 199 81-290 110-340 (1081)
279 PLN02919 haloacid dehalogenase 98.1 0.0018 3.8E-08 67.4 26.3 195 89-294 571-838 (1057)
280 TIGR03300 assembly_YfgL outer 98.1 0.001 2.2E-08 61.3 22.2 181 98-297 146-346 (377)
281 KOG4714 Nucleoporin [Nuclear s 98.1 1.9E-05 4E-10 67.1 9.4 94 194-290 159-255 (319)
282 KOG0280 Uncharacterized conser 98.1 0.00011 2.3E-09 63.5 13.8 192 88-292 124-336 (339)
283 KOG4190 Uncharacterized conser 98.1 8.5E-06 1.8E-10 75.6 7.5 162 128-297 736-914 (1034)
284 smart00320 WD40 WD40 repeats. 98.0 1.3E-05 2.9E-10 46.4 4.9 36 251-287 5-40 (40)
285 PF13360 PQQ_2: PQQ-like domai 98.0 0.0071 1.5E-07 51.5 23.3 177 107-295 4-197 (238)
286 TIGR03300 assembly_YfgL outer 98.0 0.0024 5.1E-08 58.8 21.6 184 97-296 65-266 (377)
287 PF00780 CNH: CNH domain; Int 98.0 0.0049 1.1E-07 54.0 22.7 194 87-297 37-263 (275)
288 PF00400 WD40: WD domain, G-be 98.0 1.6E-05 3.5E-10 47.8 4.7 32 81-112 7-39 (39)
289 PF08450 SGL: SMP-30/Gluconola 98.0 0.0092 2E-07 51.5 25.4 190 90-297 4-220 (246)
290 KOG1409 Uncharacterized conser 98.0 0.0006 1.3E-08 60.2 15.7 152 82-247 111-270 (404)
291 KOG0309 Conserved WD40 repeat- 98.0 4.8E-05 1E-09 72.9 9.6 201 80-292 19-235 (1081)
292 KOG2695 WD40 repeat protein [G 97.9 5E-05 1.1E-09 66.9 8.5 138 155-297 233-384 (425)
293 PF04762 IKI3: IKI3 family; I 97.9 0.0028 6E-08 65.0 22.1 195 85-290 209-457 (928)
294 KOG1832 HIV-1 Vpr-binding prot 97.9 7.5E-06 1.6E-10 79.7 3.2 191 82-296 1098-1298(1516)
295 PF04762 IKI3: IKI3 family; I 97.9 0.0021 4.5E-08 65.9 20.7 199 84-294 74-293 (928)
296 PF11768 DUF3312: Protein of u 97.8 0.00071 1.5E-08 63.7 15.1 92 195-291 237-331 (545)
297 KOG1912 WD40 repeat protein [G 97.8 0.0015 3.3E-08 63.3 16.9 198 87-295 17-266 (1062)
298 KOG2066 Vacuolar assembly/sort 97.8 0.0027 5.9E-08 61.7 18.6 154 82-247 55-233 (846)
299 PF06433 Me-amine-dh_H: Methyl 97.8 0.027 5.8E-07 50.6 26.5 111 90-206 40-170 (342)
300 KOG2041 WD40 repeat protein [G 97.8 0.00015 3.2E-09 69.5 9.5 76 85-167 14-104 (1189)
301 PRK04043 tolB translocation pr 97.8 0.032 6.9E-07 52.3 25.1 156 129-293 189-361 (419)
302 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0093 2E-07 55.7 21.4 39 258-297 216-254 (410)
303 COG5354 Uncharacterized protei 97.7 0.0083 1.8E-07 55.7 19.7 199 86-293 174-399 (561)
304 KOG3914 WD repeat protein WDR4 97.7 0.001 2.2E-08 59.7 13.4 153 88-250 65-226 (390)
305 KOG4640 Anaphase-promoting com 97.7 0.00019 4.1E-09 67.9 8.7 77 218-296 22-99 (665)
306 PF07433 DUF1513: Protein of u 97.6 0.033 7.1E-07 49.4 20.8 181 91-281 56-278 (305)
307 PF04053 Coatomer_WDAD: Coatom 97.6 0.0073 1.6E-07 56.8 17.9 162 87-269 34-207 (443)
308 PF08553 VID27: VID27 cytoplas 97.6 0.016 3.5E-07 57.8 20.7 131 154-289 502-647 (794)
309 KOG1912 WD40 repeat protein [G 97.6 0.0023 5.1E-08 62.1 14.2 157 83-248 53-305 (1062)
310 KOG4190 Uncharacterized conser 97.6 0.00024 5.2E-09 66.2 7.4 199 82-293 732-952 (1034)
311 KOG4532 WD40-like repeat conta 97.6 0.004 8.7E-08 53.5 14.1 133 154-292 92-236 (344)
312 KOG2114 Vacuolar assembly/sort 97.5 0.022 4.7E-07 56.1 20.3 196 87-293 27-247 (933)
313 TIGR02658 TTQ_MADH_Hv methylam 97.5 0.073 1.6E-06 48.5 23.2 105 106-213 27-147 (352)
314 KOG2395 Protein involved in va 97.5 0.0053 1.2E-07 57.4 14.7 130 155-288 355-499 (644)
315 PF05096 Glu_cyclase_2: Glutam 97.5 0.063 1.4E-06 46.6 23.4 120 86-213 45-168 (264)
316 PRK02888 nitrous-oxide reducta 97.4 0.035 7.5E-07 53.8 20.2 188 91-290 198-405 (635)
317 KOG1334 WD40 repeat protein [G 97.4 0.00066 1.4E-08 62.4 8.2 156 126-291 141-314 (559)
318 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.062 1.3E-06 46.3 18.8 148 97-257 23-175 (354)
319 PRK11138 outer membrane biogen 97.3 0.046 1E-06 50.7 19.3 107 97-212 69-188 (394)
320 PF12894 Apc4_WD40: Anaphase-p 97.3 0.00079 1.7E-08 42.4 5.1 36 258-295 11-46 (47)
321 KOG1920 IkappaB kinase complex 97.2 0.052 1.1E-06 55.5 19.9 193 86-291 69-324 (1265)
322 KOG1645 RING-finger-containing 97.1 0.033 7.2E-07 50.5 15.5 206 80-297 188-427 (463)
323 KOG1275 PAB-dependent poly(A) 97.1 0.0066 1.4E-07 60.0 11.5 149 93-246 183-341 (1118)
324 KOG3621 WD40 repeat-containing 97.0 0.0034 7.3E-08 60.3 8.7 110 178-290 38-155 (726)
325 PF11768 DUF3312: Protein of u 97.0 0.0045 9.8E-08 58.4 9.0 77 80-166 254-331 (545)
326 KOG2041 WD40 repeat protein [G 96.9 0.046 1E-06 53.1 15.6 195 82-289 112-337 (1189)
327 PF15492 Nbas_N: Neuroblastoma 96.9 0.074 1.6E-06 46.2 15.6 154 87-249 45-261 (282)
328 KOG2314 Translation initiation 96.9 0.017 3.7E-07 54.3 12.3 156 129-296 212-388 (698)
329 PRK11138 outer membrane biogen 96.9 0.14 3E-06 47.5 18.3 126 154-288 264-393 (394)
330 KOG2066 Vacuolar assembly/sort 96.9 0.02 4.3E-07 56.0 12.5 139 138-295 48-193 (846)
331 cd00216 PQQ_DH Dehydrogenases 96.9 0.37 7.9E-06 46.2 21.4 139 154-297 118-327 (488)
332 PF08450 SGL: SMP-30/Gluconola 96.8 0.29 6.3E-06 42.1 26.3 187 88-277 42-245 (246)
333 PF03178 CPSF_A: CPSF A subuni 96.7 0.42 9.1E-06 43.0 24.0 174 97-284 42-260 (321)
334 KOG0882 Cyclophilin-related pe 96.7 0.039 8.4E-07 50.8 12.3 206 82-297 50-313 (558)
335 COG5170 CDC55 Serine/threonine 96.7 0.023 5E-07 49.9 10.4 158 80-245 167-365 (460)
336 PRK02888 nitrous-oxide reducta 96.6 0.079 1.7E-06 51.4 14.9 173 88-276 237-449 (635)
337 PF14783 BBS2_Mid: Ciliary BBS 96.5 0.19 4.2E-06 37.6 12.9 86 154-243 23-110 (111)
338 PF00780 CNH: CNH domain; Int 96.4 0.57 1.2E-05 40.8 19.0 137 95-249 5-167 (275)
339 KOG4640 Anaphase-promoting com 96.3 0.03 6.5E-07 53.4 9.8 96 86-190 21-120 (665)
340 COG0823 TolB Periplasmic compo 96.3 0.073 1.6E-06 49.9 12.4 133 157-292 219-361 (425)
341 KOG2079 Vacuolar assembly/sort 96.3 0.0062 1.3E-07 61.2 5.2 67 229-297 100-168 (1206)
342 smart00320 WD40 WD40 repeats. 96.2 0.01 2.2E-07 33.5 4.1 30 83-112 10-40 (40)
343 PF08596 Lgl_C: Lethal giant l 96.2 1.1 2.4E-05 41.7 20.0 195 82-288 83-334 (395)
344 PF04053 Coatomer_WDAD: Coatom 96.1 0.32 7E-06 45.9 15.8 134 97-247 117-262 (443)
345 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.38 8.2E-06 36.1 12.5 88 186-283 16-108 (111)
346 COG0823 TolB Periplasmic compo 96.0 0.38 8.3E-06 45.1 15.6 181 86-276 193-387 (425)
347 PF10313 DUF2415: Uncharacteri 96.0 0.028 6E-07 34.4 5.2 34 259-293 1-37 (43)
348 KOG1008 Uncharacterized conser 95.9 0.0027 5.8E-08 60.5 0.6 195 85-289 56-275 (783)
349 PF12894 Apc4_WD40: Anaphase-p 95.8 0.024 5.2E-07 35.6 4.7 29 85-113 11-40 (47)
350 COG3391 Uncharacterized conser 95.8 1.5 3.3E-05 40.5 25.8 201 88-296 76-290 (381)
351 KOG1920 IkappaB kinase complex 95.8 0.78 1.7E-05 47.4 17.4 149 129-287 70-272 (1265)
352 KOG3617 WD40 and TPR repeat-co 95.8 0.025 5.3E-07 55.9 6.8 90 194-289 41-131 (1416)
353 COG3386 Gluconolactonase [Carb 95.8 1.3 2.8E-05 39.8 17.4 134 155-289 46-193 (307)
354 PF05096 Glu_cyclase_2: Glutam 95.5 1.5 3.3E-05 38.2 21.2 148 138-297 54-211 (264)
355 KOG1645 RING-finger-containing 95.5 0.05 1.1E-06 49.4 7.0 92 196-291 175-268 (463)
356 KOG4714 Nucleoporin [Nuclear s 95.5 0.26 5.5E-06 42.5 10.9 91 106-203 159-255 (319)
357 COG3823 Glutamine cyclotransfe 95.1 0.88 1.9E-05 38.1 12.7 173 96-276 55-247 (262)
358 PF00930 DPPIV_N: Dipeptidyl p 95.1 1.9 4.1E-05 39.4 16.5 174 94-293 1-222 (353)
359 KOG2444 WD40 repeat protein [G 95.0 0.029 6.3E-07 47.2 3.9 134 154-290 38-178 (238)
360 KOG1897 Damage-specific DNA bi 95.0 3.6 7.9E-05 41.9 18.7 195 91-290 676-899 (1096)
361 KOG1832 HIV-1 Vpr-binding prot 95.0 0.025 5.4E-07 56.1 3.8 91 204-297 1091-1184(1516)
362 PF05694 SBP56: 56kDa selenium 94.4 4.3 9.4E-05 37.9 18.2 155 94-248 138-343 (461)
363 PHA02713 hypothetical protein; 94.4 5.4 0.00012 39.0 19.3 60 229-292 465-536 (557)
364 PF02897 Peptidase_S9_N: Proly 93.8 5.6 0.00012 37.0 25.3 202 87-293 125-361 (414)
365 KOG3617 WD40 and TPR repeat-co 93.8 0.14 3.1E-06 50.7 6.1 112 129-247 17-131 (1416)
366 PF08596 Lgl_C: Lethal giant l 93.7 6 0.00013 36.9 22.7 199 87-297 3-298 (395)
367 COG5167 VID27 Protein involved 93.7 2.3 5E-05 40.3 13.4 130 155-289 489-632 (776)
368 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 7.6 0.00016 37.7 22.4 141 154-295 128-339 (527)
369 KOG4441 Proteins containing BT 93.3 4.6 0.0001 39.6 15.8 130 155-291 395-548 (571)
370 cd00216 PQQ_DH Dehydrogenases 93.2 8.1 0.00018 37.0 17.1 138 154-297 69-272 (488)
371 KOG2079 Vacuolar assembly/sort 93.0 0.46 1E-05 48.4 8.3 106 177-288 91-202 (1206)
372 PF04841 Vps16_N: Vps16, N-ter 92.8 8.5 0.00019 36.0 19.2 29 86-114 81-109 (410)
373 KOG4649 PQQ (pyrrolo-quinoline 92.7 6.3 0.00014 34.3 15.4 93 154-249 31-125 (354)
374 PF08553 VID27: VID27 cytoplas 92.7 1.8 3.8E-05 43.7 11.9 139 95-245 491-645 (794)
375 KOG1916 Nuclear protein, conta 92.2 0.095 2.1E-06 52.3 2.4 59 229-289 196-265 (1283)
376 KOG1900 Nuclear pore complex, 92.1 2.6 5.7E-05 44.1 12.5 135 154-290 97-273 (1311)
377 PF14727 PHTB1_N: PTHB1 N-term 91.8 11 0.00025 35.2 17.0 133 154-288 45-203 (418)
378 KOG1897 Damage-specific DNA bi 91.7 11 0.00025 38.5 16.0 177 108-289 752-942 (1096)
379 KOG1008 Uncharacterized conser 91.7 0.057 1.2E-06 51.8 0.4 130 154-287 78-223 (783)
380 KOG2114 Vacuolar assembly/sort 91.7 5.8 0.00013 39.9 13.8 120 85-211 125-252 (933)
381 PF06433 Me-amine-dh_H: Methyl 91.5 11 0.00023 34.3 21.6 55 195-251 270-324 (342)
382 KOG2395 Protein involved in va 91.4 2.1 4.5E-05 40.7 10.1 146 93-244 341-497 (644)
383 PHA03098 kelch-like protein; P 91.2 15 0.00032 35.5 19.0 130 156-291 358-513 (534)
384 PRK13616 lipoprotein LpqB; Pro 90.9 17 0.00038 35.8 19.9 185 87-281 351-561 (591)
385 KOG3621 WD40 repeat-containing 90.9 18 0.00038 35.8 19.1 73 86-165 77-155 (726)
386 PF11715 Nup160: Nucleoporin N 90.7 0.5 1.1E-05 45.8 5.8 38 259-297 215-256 (547)
387 COG3386 Gluconolactonase [Carb 90.7 12 0.00026 33.5 20.2 97 198-297 145-250 (307)
388 COG3490 Uncharacterized protei 90.3 12 0.00027 33.0 16.9 197 87-296 69-317 (366)
389 PF14870 PSII_BNR: Photosynthe 90.3 13 0.00028 33.3 20.8 187 85-287 16-213 (302)
390 PF12234 Rav1p_C: RAVE protein 89.7 22 0.00048 35.1 15.9 98 139-245 40-154 (631)
391 PF14781 BBS2_N: Ciliary BBSom 89.6 8.2 0.00018 30.0 13.1 111 90-210 3-133 (136)
392 PF06977 SdiA-regulated: SdiA- 89.5 13 0.00029 32.2 23.7 188 87-286 23-247 (248)
393 KOG1896 mRNA cleavage and poly 89.3 27 0.00059 36.8 16.5 131 154-289 1063-1213(1366)
394 TIGR03074 PQQ_membr_DH membran 89.3 27 0.0006 35.5 23.5 142 154-296 268-484 (764)
395 PF06977 SdiA-regulated: SdiA- 88.7 15 0.00033 31.8 16.5 157 128-296 22-207 (248)
396 PF10168 Nup88: Nuclear pore c 87.9 12 0.00027 37.6 13.2 35 257-292 145-182 (717)
397 COG3391 Uncharacterized conser 87.5 24 0.00051 32.6 25.1 139 154-296 94-246 (381)
398 PF00930 DPPIV_N: Dipeptidyl p 87.4 2 4.4E-05 39.2 7.0 55 238-294 22-76 (353)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 87.1 10 0.00022 35.5 11.4 41 83-123 305-346 (415)
400 PF05694 SBP56: 56kDa selenium 86.8 28 0.00061 32.7 19.7 194 96-291 86-344 (461)
401 COG3490 Uncharacterized protei 86.4 18 0.00038 32.1 11.5 110 165-276 57-179 (366)
402 PF15390 DUF4613: Domain of un 86.1 35 0.00077 33.3 16.8 112 177-289 58-186 (671)
403 PF10214 Rrn6: RNA polymerase 86.0 43 0.00093 34.2 19.7 156 84-247 144-329 (765)
404 PHA02790 Kelch-like protein; P 85.6 35 0.00075 32.6 19.2 139 140-292 319-473 (480)
405 KOG1898 Splicing factor 3b, su 85.3 51 0.0011 34.4 18.1 123 155-281 911-1041(1205)
406 PF14583 Pectate_lyase22: Olig 85.2 31 0.00068 31.9 19.7 68 92-168 42-114 (386)
407 PRK10115 protease 2; Provision 85.1 45 0.00097 33.6 25.1 194 87-289 128-344 (686)
408 PHA02713 hypothetical protein; 84.8 14 0.00029 36.2 11.6 149 95-250 350-536 (557)
409 PF03088 Str_synth: Strictosid 84.4 4.8 0.0001 29.0 6.2 42 235-276 33-74 (89)
410 TIGR02276 beta_rpt_yvtn 40-res 83.5 4.4 9.5E-05 23.9 5.0 29 268-297 1-30 (42)
411 PF07569 Hira: TUP1-like enhan 83.4 10 0.00023 32.1 9.0 67 220-291 16-97 (219)
412 PF07676 PD40: WD40-like Beta 82.9 5.1 0.00011 23.4 5.1 30 256-286 6-38 (39)
413 PF08728 CRT10: CRT10; InterP 82.7 33 0.00071 34.4 13.1 103 185-290 49-196 (717)
414 PF07569 Hira: TUP1-like enhan 82.4 9.1 0.0002 32.5 8.2 30 135-171 18-47 (219)
415 PF10168 Nup88: Nuclear pore c 82.2 17 0.00036 36.7 11.1 73 87-166 86-181 (717)
416 smart00564 PQQ beta-propeller 82.0 3.7 8E-05 22.9 4.0 25 272-297 8-32 (33)
417 PF10313 DUF2415: Uncharacteri 81.3 5.8 0.00013 24.3 4.7 29 87-115 2-34 (43)
418 PF12234 Rav1p_C: RAVE protein 80.9 62 0.0013 32.1 14.2 107 88-201 32-155 (631)
419 PF01011 PQQ: PQQ enzyme repea 80.0 3 6.6E-05 24.5 3.3 22 275-297 5-26 (38)
420 PF14781 BBS2_N: Ciliary BBSom 79.1 28 0.00061 27.1 12.4 52 155-206 19-85 (136)
421 PF15390 DUF4613: Domain of un 78.5 63 0.0014 31.6 12.9 109 86-201 57-185 (671)
422 PF11715 Nup160: Nucleoporin N 77.8 17 0.00038 35.2 9.6 30 138-174 229-258 (547)
423 PF12657 TFIIIC_delta: Transcr 77.2 22 0.00047 28.8 8.6 31 259-290 86-122 (173)
424 KOG2280 Vacuolar assembly/sort 75.2 96 0.0021 31.2 15.7 39 258-297 216-254 (829)
425 PF08728 CRT10: CRT10; InterP 75.0 98 0.0021 31.2 16.1 69 218-288 167-245 (717)
426 PF09826 Beta_propel: Beta pro 74.9 85 0.0018 30.5 18.9 100 96-199 21-144 (521)
427 smart00036 CNH Domain found in 74.8 62 0.0013 28.8 13.9 63 95-164 11-73 (302)
428 PF10395 Utp8: Utp8 family; I 74.4 97 0.0021 30.9 16.8 158 85-249 129-307 (670)
429 PF14583 Pectate_lyase22: Olig 73.7 77 0.0017 29.4 14.6 149 136-290 44-223 (386)
430 KOG4460 Nuclear pore complex, 73.3 73 0.0016 30.8 11.7 27 87-113 105-131 (741)
431 PF14761 HPS3_N: Hermansky-Pud 73.3 17 0.00037 30.7 7.0 43 236-279 35-80 (215)
432 KOG4441 Proteins containing BT 73.2 97 0.0021 30.4 13.4 108 96-205 380-502 (571)
433 KOG4460 Nuclear pore complex, 73.1 64 0.0014 31.2 11.3 34 260-294 167-203 (741)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 73.1 83 0.0018 29.6 22.8 40 255-295 304-343 (415)
435 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.3 98 0.0021 30.0 22.2 28 269-297 471-498 (527)
436 KOG3630 Nuclear pore complex, 72.0 30 0.00064 36.4 9.5 52 235-287 174-226 (1405)
437 KOG2444 WD40 repeat protein [G 71.9 11 0.00023 32.2 5.5 32 91-122 108-140 (238)
438 KOG1898 Splicing factor 3b, su 71.3 1.3E+02 0.0028 31.6 13.6 85 156-243 954-1044(1205)
439 COG4590 ABC-type uncharacteriz 70.8 25 0.00055 33.2 8.0 56 235-292 334-389 (733)
440 PF03022 MRJP: Major royal jel 70.4 77 0.0017 28.0 15.2 132 156-290 34-216 (287)
441 TIGR03074 PQQ_membr_DH membran 70.4 1.3E+02 0.0029 30.7 14.4 18 279-297 335-352 (764)
442 TIGR02604 Piru_Ver_Nterm putat 70.0 89 0.0019 28.6 17.8 111 177-287 73-212 (367)
443 PF12657 TFIIIC_delta: Transcr 69.7 41 0.0009 27.1 8.6 25 87-112 6-30 (173)
444 PF01436 NHL: NHL repeat; Int 68.6 13 0.00028 20.2 3.7 25 261-286 4-28 (28)
445 PRK13616 lipoprotein LpqB; Pro 68.0 67 0.0014 31.7 11.0 67 217-287 352-425 (591)
446 KOG2109 WD40 repeat protein [G 67.6 6.4 0.00014 38.5 3.7 49 241-289 297-346 (788)
447 COG4880 Secreted protein conta 64.6 36 0.00078 31.9 7.7 70 174-247 426-503 (603)
448 KOG4499 Ca2+-binding protein R 62.4 63 0.0014 27.9 8.2 76 221-297 162-249 (310)
449 PF08801 Nucleoporin_N: Nup133 62.2 1.4E+02 0.0029 27.9 13.9 31 259-290 190-220 (422)
450 smart00036 CNH Domain found in 61.2 1.2E+02 0.0026 27.0 18.1 198 84-297 41-278 (302)
451 PF10214 Rrn6: RNA polymerase 60.4 2E+02 0.0044 29.3 14.9 103 187-293 100-236 (765)
452 PF09826 Beta_propel: Beta pro 60.0 1E+02 0.0022 29.9 10.5 47 138-192 21-70 (521)
453 PF01731 Arylesterase: Arylest 58.9 63 0.0014 23.0 6.9 32 259-290 54-85 (86)
454 KOG3630 Nuclear pore complex, 58.0 1.6E+02 0.0035 31.4 11.5 118 156-277 124-262 (1405)
455 KOG4499 Ca2+-binding protein R 56.7 1.3E+02 0.0029 26.0 12.8 45 179-223 217-262 (310)
456 PF12341 DUF3639: Protein of u 56.0 32 0.0007 18.7 3.7 24 176-199 2-26 (27)
457 KOG2247 WD40 repeat-containing 54.7 1.7 3.6E-05 41.0 -2.5 122 154-281 54-181 (615)
458 PF02897 Peptidase_S9_N: Proly 54.5 1.8E+02 0.0039 26.8 24.5 196 90-293 174-408 (414)
459 COG5308 NUP170 Nuclear pore co 54.4 94 0.002 32.1 9.1 133 154-291 100-277 (1263)
460 KOG1900 Nuclear pore complex, 54.2 1.2E+02 0.0026 32.6 10.1 92 187-281 92-200 (1311)
461 PF14761 HPS3_N: Hermansky-Pud 52.2 1.5E+02 0.0032 25.2 13.5 101 101-202 33-163 (215)
462 PHA03098 kelch-like protein; P 51.0 2.3E+02 0.0051 27.2 18.0 108 96-205 342-467 (534)
463 KOG3616 Selective LIM binding 50.2 32 0.0007 34.6 5.2 66 218-287 16-81 (1636)
464 TIGR03118 PEPCTERM_chp_1 conse 49.8 2E+02 0.0043 26.0 22.2 62 234-296 217-286 (336)
465 TIGR02276 beta_rpt_yvtn 40-res 46.5 57 0.0012 18.8 6.2 27 155-181 13-39 (42)
466 PRK12634 flgD flagellar basal 46.0 1.4E+02 0.0031 25.3 8.1 78 195-276 125-207 (221)
467 TIGR02608 delta_60_rpt delta-6 45.2 66 0.0014 20.8 4.5 17 261-277 3-19 (55)
468 COG3823 Glutamine cyclotransfe 42.3 2.2E+02 0.0047 24.3 12.1 134 155-296 67-211 (262)
469 PF14870 PSII_BNR: Photosynthe 42.0 2.6E+02 0.0056 25.1 19.8 179 90-281 108-297 (302)
470 PRK12633 flgD flagellar basal 41.2 1.9E+02 0.0042 24.7 8.2 85 195-287 132-223 (230)
471 PF07995 GSDH: Glucose / Sorbo 40.9 1.3E+02 0.0027 27.2 7.5 54 227-281 270-328 (331)
472 PF10584 Proteasome_A_N: Prote 40.6 7.1 0.00015 20.4 -0.4 9 265-273 7-15 (23)
473 KOG1983 Tomosyn and related SN 38.9 5.1E+02 0.011 27.6 15.4 27 267-294 243-269 (993)
474 PF01731 Arylesterase: Arylest 37.7 69 0.0015 22.8 4.1 28 87-114 55-84 (86)
475 COG5167 VID27 Protein involved 37.1 1.7E+02 0.0037 28.4 7.6 90 194-288 490-590 (776)
476 PRK06655 flgD flagellar basal 36.9 2.2E+02 0.0048 24.3 7.8 19 258-276 192-210 (225)
477 KOG2109 WD40 repeat protein [G 36.1 55 0.0012 32.4 4.3 86 194-281 295-391 (788)
478 PF12768 Rax2: Cortical protei 34.5 1.2E+02 0.0025 26.9 5.9 54 237-291 14-74 (281)
479 COG5290 IkappaB kinase complex 34.0 5.5E+02 0.012 26.6 11.1 97 131-232 250-354 (1243)
480 cd06919 Asp_decarbox Aspartate 33.9 46 0.001 24.9 2.8 19 279-297 39-57 (111)
481 PF11090 DUF2833: Protein of u 33.0 45 0.00098 23.7 2.5 29 263-293 2-30 (86)
482 TIGR02171 Fb_sc_TIGR02171 Fibr 32.9 1.2E+02 0.0026 31.4 6.3 54 237-290 327-386 (912)
483 COG5514 Uncharacterized conser 32.5 2.7E+02 0.0059 22.6 8.4 51 2-53 6-56 (203)
484 PF05935 Arylsulfotrans: Aryls 32.2 4.6E+02 0.0099 25.1 13.2 95 194-297 128-239 (477)
485 COG5308 NUP170 Nuclear pore co 31.8 1.9E+02 0.0041 30.1 7.3 96 187-288 95-208 (1263)
486 KOG2883 NIPSNAP1 protein [Func 31.6 25 0.00055 29.6 1.2 17 5-21 136-152 (253)
487 PHA02790 Kelch-like protein; P 31.3 4.7E+02 0.01 24.9 16.6 104 95-204 317-425 (480)
488 COG5290 IkappaB kinase complex 31.3 4.6E+02 0.01 27.1 9.7 19 262-280 250-268 (1243)
489 PF10395 Utp8: Utp8 family; I 30.9 5.7E+02 0.012 25.8 21.1 196 84-296 70-312 (670)
490 KOG1916 Nuclear protein, conta 30.7 89 0.0019 32.3 4.9 21 93-113 243-264 (1283)
491 PF10647 Gmad1: Lipoprotein Lp 30.7 3.5E+02 0.0075 23.3 21.5 184 87-281 25-230 (253)
492 KOG2280 Vacuolar assembly/sort 30.4 1.7E+02 0.0037 29.6 6.7 90 194-290 64-157 (829)
493 PRK10115 protease 2; Provision 30.3 5.8E+02 0.013 25.7 26.2 196 89-292 175-397 (686)
494 KOG2714 SETA binding protein S 30.0 4.8E+02 0.01 24.7 9.7 107 155-290 244-372 (465)
495 PF11090 DUF2833: Protein of u 29.9 60 0.0013 23.1 2.7 28 90-117 2-29 (86)
496 PRK05449 aspartate alpha-decar 29.7 58 0.0013 25.0 2.8 19 279-297 40-58 (126)
497 PLN00033 photosystem II stabil 28.9 4.8E+02 0.011 24.3 23.1 104 175-281 280-392 (398)
498 PF08954 DUF1900: Domain of un 28.9 2.1E+02 0.0045 22.3 5.9 50 220-269 14-67 (136)
499 KOG2377 Uncharacterized conser 28.7 5.3E+02 0.012 24.8 12.2 94 126-226 65-165 (657)
500 PF10647 Gmad1: Lipoprotein Lp 28.4 3.8E+02 0.0083 23.0 14.6 145 129-281 25-188 (253)
No 1
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=221.54 Aligned_cols=211 Identities=61% Similarity=1.009 Sum_probs=195.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
....++|++|...+|+|.++|+|||++++.++...+.+ +.++..++++.+..+++++++|+..+.+..++|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 45669999999999999999999999999887666666 35669999999999999999999888889999999999999
Q ss_pred cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387 167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (298)
Q Consensus 167 ~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~ 245 (298)
.++.++.+.++|.+|.+.+++++++..++|++|... +.+.++.+.+..+|.+.|++++..+..+||++|..-|.|+|-+
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 999999999999999999999999999999999996 8899999999999999999999999999999999999999988
Q ss_pred cCCcce---EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 246 ~~~~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
+..... ..+.+|.+.|.||+++-+|.++||+|..||+|||||..+|++++|++
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 765544 68999999999999999999999999999999999999999999974
No 2
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.97 E-value=9e-29 Score=214.27 Aligned_cols=205 Identities=37% Similarity=0.663 Sum_probs=187.5
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
..+..+.|++|+..|+.|+.+|.++|++++....+... .+++.++++.|...++|+++-. +.+.+++.+.++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~---~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD---TEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchHHhhccc---CCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence 36778889999999999999999999999988755554 5789999999999999999964 347899999999
Q ss_pred CcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCC-CceEEE
Q 022387 166 SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQ-KGQVRV 243 (298)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~-dg~v~i 243 (298)
+..+.++.|..+|.+|.++.++++|+..+.|+|||++++++++++... .++.++|+++++..+.++|+.++. .|.|.+
T Consensus 78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 999999999999999999999999999999999999999999999885 788999999999999999998765 589999
Q ss_pred EEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 244 EHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 244 ~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
||..+ .+...+.+|++++.||+|+++|.+|||+|+.|++||||.+.+|++++||+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 88765 45668999999999999999999999999999999999999999999985
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=218.10 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=172.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC-C---------
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-D--------- 150 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 150 (298)
.+|..+|.|++|+|+|+.||+|+.|. +|+||+++....++.+- |.+-+.++.|++++..+|..+-.. .
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 57888999999999999999999855 89999999887777665 677788888888877666433110 0
Q ss_pred -------------------------------CCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE--CCeE
Q 022387 151 -------------------------------PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL--EQKI 196 (298)
Q Consensus 151 -------------------------------~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~--~~~I 196 (298)
....||+|+|||+..++++..+..+ .+|+|+.|..+.++... |++|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 0113788888888888888777766 48999999876666554 4799
Q ss_pred EEEEcCCCeEEEEEeccCCCcceEEEEeC---------CC-------------------------CeEEEEecCCCceEE
Q 022387 197 FVYNFADLKLLHQIETIANPKGLCAVSQG---------VG-------------------------SLVLVCPGLQKGQVR 242 (298)
Q Consensus 197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~---------~d-------------------------~~~la~sGs~dg~v~ 242 (298)
++|+..++++++++++|.+.+..++++.+ +. +..++ +|++|+++.
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV-SgsDd~tlf 349 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV-SGSDDFTLF 349 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE-EecCCceEE
Confidence 99999999999999999999888877722 11 23466 699999999
Q ss_pred EEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 243 VEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 243 i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
+|+-.. +++..+.+|..-|+.+.||||++++|++|.|+. ||+||-++|+.+.+|+
T Consensus 350 lW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 350 LWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFR 406 (480)
T ss_pred EecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhh
Confidence 998542 356688999999999999999999999999999 9999999999887664
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=8.1e-28 Score=198.80 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=172.8
Q ss_pred CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
++......+.+-....+.|+.+.+.||+++||+|+...||+||+.+... +...+. |.+.+..+.+..++..+++.+
T Consensus 25 Wqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTgs- 102 (311)
T KOG0315|consen 25 WQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG-HTKNVTAVGFQCDGRWMYTGS- 102 (311)
T ss_pred eehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec-cCCceEEEEEeecCeEEEecC-
Confidence 3444444444445556799999999999999999999999999987654 444444 567788888888888888766
Q ss_pred CCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCC--------------------
Q 022387 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-------------------- 204 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~-------------------- 204 (298)
.||++||||++...+-+.+++..+|.++..|++ .|+++. ++.|++||+.+.
T Consensus 103 ------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 103 ------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred ------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc
Confidence 789999999999888889999999999999875 444444 378888888532
Q ss_pred -----------------------------eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEe
Q 022387 205 -----------------------------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKF 253 (298)
Q Consensus 205 -----------------------------~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~ 253 (298)
+++.+|+.|...+..|.+|++ +.+||+ ++.|.+++||+.+.- ....
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~k~lat-~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--VKYLAT-CSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--CcEEEe-ecCCceEEEEecCCceeeEEE
Confidence 233445556566666777665 499995 999999999998764 3458
Q ss_pred ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 254 ~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
+.+|..-|+.++||-||.||+|||.|++ +|+|+++.|+.+++|.
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~-~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHT-ARLWDLSAGKEVRQYQ 297 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCc-eeecccccCceeeecC
Confidence 8999999999999999999999999998 9999999999998874
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.6e-29 Score=217.30 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=183.2
Q ss_pred CCCCCCCCCCcccCCCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEE
Q 022387 69 YQMPLPSPAESTSSSPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV 145 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
.++.+.....-+.++|...|.++.|+|. +..||+++.|| +++|..+....+...+. |...+.-+.+.+++..++++
T Consensus 201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCceeeec
Confidence 4555555556667899999999999997 56899999866 88999988665555554 67788888888999998888
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCA 221 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~ 221 (298)
+ .|.+-++||++++..+...+.++ .|.+++|++++-++++. ..=+|||++++.++..+.+|..++..++
T Consensus 280 s-------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~ 352 (459)
T KOG0272|consen 280 S-------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVA 352 (459)
T ss_pred c-------cccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEe
Confidence 8 78999999999998877666654 89999999998887764 5789999999999999999988877777
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|+|+ |..|| +|+.|++++|||+.... +.++.+|..-|+.|+|+| .|++|+|+|.|++ +|||..++..+++.+
T Consensus 353 fsPN--Gy~lA-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 353 FSPN--GYHLA-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSL 426 (459)
T ss_pred ECCC--ceEEe-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhh
Confidence 7665 48888 59999999999998765 568999999999999998 6899999999999 999999999888754
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=7e-28 Score=225.46 Aligned_cols=199 Identities=15% Similarity=0.208 Sum_probs=173.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..+|.++|..++|+||.++|+++++|+ +|+|.+++...+....- |..++..+.+++.+-++|+++ .|++.+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~GyYFatas-------~D~tAr 518 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGYYFATAS-------HDQTAR 518 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCceEEEecC-------CCceee
Confidence 468899999999999999999999855 99999999888766664 677888888777777777765 689999
Q ss_pred EEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 160 IWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
+|........+.+..+ +.|.|+.|||+.-.+++ +.+||+||+.++..++.|.+|..++.+++||+.+ .+|| +|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G--r~La-Sg 595 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG--RYLA-SG 595 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC--ceEe-ec
Confidence 9999988887777655 68999999998766654 4799999999999999999999999999988854 9999 69
Q ss_pred CCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 236 LQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 236 s~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+.||.|.|||+... .+..+++|++.|.+|.||.||..||+||.|.+ |++||+..-
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns-V~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS-VRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe-EEEEEchhh
Confidence 99999999999985 45689999999999999999999999999999 999998753
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=213.83 Aligned_cols=195 Identities=16% Similarity=0.215 Sum_probs=169.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|..+|..|+|+|+|++|+|++- .+.++||+.+..+++..+- |..++..+.+.+++.+.+++| .|..-+|
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL~~tGG-------lD~~~Rv 329 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSLAATGG-------LDSLGRV 329 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCceeeccC-------ccchhhe
Confidence 567789999999999999999996 5589999999988777775 677788888888887665554 6788999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
||++++.++-.+..+ .+|.+|.|+|++..+++ |++++|||++.-+.++++.+|.+-+.-+.|++ ..|.+|+ +++
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p-~~g~fL~-Tas 407 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP-QEGYFLV-TAS 407 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc-cCCeEEE-Ecc
Confidence 999999999888866 58999999998776665 47999999998888999999999888888888 3457777 599
Q ss_pred CCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 237 QKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 237 ~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
.|++++||...+- +++++.+|.+.|-++++++||.+|+|+|.|++ ||+|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT-~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT-IKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCce-eeecc
Confidence 9999999998765 46799999999999999999999999999999 99995
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=4.6e-26 Score=202.55 Aligned_cols=202 Identities=18% Similarity=0.243 Sum_probs=166.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
....|++++||.+|++||+|+.+| +|||+..-. ...+... |.+++..+.|...+++++.++ .|+++.+||
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~-HkgPI~slKWnk~G~yilS~~-------vD~ttilwd 304 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQ-HKGPIFSLKWNKKGTYILSGG-------VDGTTILWD 304 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhc-cCCceEEEEEcCCCCEEEecc-------CCccEEEEe
Confidence 346899999999999999999988 779997643 3333333 789999999999999888877 789999999
Q ss_pred CCCCcEEEEeecCCce-EEEEEeCC-eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 163 DHQSRCIGELSFRSEV-RSVKLRRD-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~v-~~v~~~~~-~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
..+++..+.+.+++.. ..|.|-.+ .++.+ +++.|+++.+....++.++.+|.+.+.++.+ ++.+.+|+ ++|+|+
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~--n~tg~LLa-S~SdD~ 381 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW--NPTGSLLA-SCSDDG 381 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE--CCCCceEE-EecCCC
Confidence 9999999999998866 77888654 44443 3689999999999999999998777655554 44557887 588888
Q ss_pred eEEEEEcC---------------------------------------------------C-cceEeecccccceeEEEEC
Q 022387 240 QVRVEHYA---------------------------------------------------S-KRTKFIMAHDSRIACFALT 267 (298)
Q Consensus 240 ~v~i~~~~---------------------------------------------------~-~~~~~~~~H~~~V~~l~fs 267 (298)
+++||..+ . .++.+|..|..+|.+|+||
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec
Confidence 88888732 1 1244678999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 268 QDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 268 pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
|+|+|||+|+.||. |.||+.++|+++++|.
T Consensus 462 ~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 462 PNGRYLASGSLDGC-VHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCCcEEEecCCCCe-eEeccccchheeEeec
Confidence 99999999999999 9999999999999874
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.4e-25 Score=184.66 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=167.3
Q ss_pred cccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC
Q 022387 79 STSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
.+...|+..|+.++..+.+ +.|.+++.|. +.+|++.... .+.+..- |.+.+.-+.++++++....++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~s----- 82 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSAS----- 82 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEecc-----
Confidence 3456788999999999874 5777888755 7799875433 2223332 678888888899998777766
Q ss_pred CCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEecc--CCCcceEEEEeC
Q 022387 152 QYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQG 225 (298)
Q Consensus 152 ~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~--~~~~~~~~~s~~ 225 (298)
-|+++|+||+.+++..+.|..+. .|++++|+++.--+++ |.+|++||+..... .++..+ .+.+.++.|+|.
T Consensus 83 --wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 83 --WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred --ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCC
Confidence 68999999999999888887664 8999999986433332 58999999875543 455443 677888899988
Q ss_pred CCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 226 VGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.++.+|+ +++.|++|++||+.+-++. .+.+|++.|+.|++||||.+.|+|+.||. +.+||++.+++++.+
T Consensus 160 ~~~p~Iv-s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 160 ESNPIIV-SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSL 230 (315)
T ss_pred CCCcEEE-EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEec
Confidence 7778888 6999999999999887665 78999999999999999999999999999 999999999998654
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=5.3e-25 Score=184.71 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=162.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|...|..+..++||++..+|+.|+ +|+||+.+++...+... |...+..++++.+...++..+ .|++|++
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGS-------rDkTikl 131 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGS-------RDKTIKL 131 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCC-------Ccceeee
Confidence 45777999999999999999998765 78999999865444443 666777777776665554444 7899999
Q ss_pred EeCCCCcEEEEeec--CCceEEEEEeCCe---EEE-E-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 161 WDDHQSRCIGELSF--RSEVRSVKLRRDR---IIV-V-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 161 WD~~~~~~~~~~~~--~~~v~~v~~~~~~---l~v-~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
||....+....... ..-|.++.|+|+. +++ + .|++|++||+++.+..+.+.+|...+..+++++|+ .+.+
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG--slca- 208 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG--SLCA- 208 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC--CEEe-
Confidence 99977665443333 4569999999862 222 2 26899999999999999999999988888988875 7777
Q ss_pred ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
+|..||.+.+||+..++-..-..|...|++++|+|+...|+.+- +-. |||||+.++.++.++.
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~s-IkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATS-IKIWDLESKAVVEELK 271 (315)
T ss_pred cCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCc-eEEEeccchhhhhhcc
Confidence 69999999999999877666667899999999999988887774 555 9999999999988763
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=194.73 Aligned_cols=207 Identities=16% Similarity=0.250 Sum_probs=175.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
++|...|..|+|+..|++||+.+.|. +++|+.++..........|++.+..+.+.+.++.++.++ .|++|+.
T Consensus 147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-------rD~tik~ 219 (406)
T KOG0295|consen 147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-------RDNTIKA 219 (406)
T ss_pred hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-------cccceeE
Confidence 67888999999999999999999877 889999874322222223688889999888888887777 7899999
Q ss_pred EeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC----------
Q 022387 161 WDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV---------- 226 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~---------- 226 (298)
||+.++-++.++..+. -|..+..+.++.+++. +.+|++|-+.++++...+..|+.++.++++.+..
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 9999999999998765 5788888888766654 4799999999998888889999999988876542
Q ss_pred ---CCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 227 ---GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 227 ---d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+++++ +|+.|++|++||+.+.. +.++.+|..-|+.++|+|-|+||+++.+|++ +||||+++++|+++.
T Consensus 300 ~~~~~~~l~-s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 300 STNGGQVLG-SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTL 372 (406)
T ss_pred CCCCccEEE-eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeecc
Confidence 135666 69999999999998875 5599999999999999999999999999999 999999999998764
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=2.6e-24 Score=181.64 Aligned_cols=206 Identities=15% Similarity=0.140 Sum_probs=164.4
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEE--ecCCCEEEEEeCCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEM--LFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~ 156 (298)
+..+|.++|.++.|++|+++|++++.|| +.|||.-+..++....+ ...-++.+ +++++.+|. || -|+
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAc--GG-----LdN 119 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVAC--GG-----LDN 119 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEe--cC-----cCc
Confidence 4478889999999999999999999977 67999988777666664 33444444 455555444 44 679
Q ss_pred eEEEEeCCCC------cEEEEeecCC-ceEEEEEeCCeEEE-E-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387 157 KVMIWDDHQS------RCIGELSFRS-EVRSVKLRRDRIIV-V-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 157 ~v~iWD~~~~------~~~~~~~~~~-~v~~v~~~~~~l~v-~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
...||++.+. ...+++..+. -+.++.|-.+..++ + ++.++.+||+++++.+..|.+|...+..+++++. +
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~-~ 198 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS-D 198 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCC-C
Confidence 9999999854 2334555553 56667776554333 3 3579999999999999999999888888888874 4
Q ss_pred CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
++.++ +|+.|+..++||+.... ..+|.+|.+.|++|+|.|+|.-|||||+|++ +|+||++..+.+..|+
T Consensus 199 ~ntFv-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 199 GNTFV-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYS 268 (343)
T ss_pred CCeEE-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeec
Confidence 47777 69999999999998775 4589999999999999999999999999999 9999999999887774
No 13
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-25 Score=185.63 Aligned_cols=198 Identities=19% Similarity=0.306 Sum_probs=156.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..|+.-|++|+|++|.++|.+|+. +-+|||+++..+..- .++. |.+++.-+.|+....-++.++ .|++||
T Consensus 97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVR 168 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVR 168 (334)
T ss_pred hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeec-------cCCceE
Confidence 456669999999999999999998 457899987544211 1111 567788888877665555544 689999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
+||.+++..++.+.+..+|.++..+++ .+.++-.+.|++||..+..+++.++...+ +.+.+++| +..++++ |..
T Consensus 169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n-V~SASL~P--~k~~fVa-Gge 244 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN-VESASLHP--KKEFFVA-GGE 244 (334)
T ss_pred EEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc-cccccccC--CCceEEe-cCc
Confidence 999999999999999999999998765 34444568999999999999888775433 33444444 4466664 999
Q ss_pred CceEEEEEcCCcceE-ee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 238 KGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 238 dg~v~i~~~~~~~~~-~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
|+.++.+|+.+.... .+ ++|-++|-||.|+|||.+.|+||+||+ ||||.+..++
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~ 300 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGK 300 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCC
Confidence 999999999887654 43 899999999999999999999999999 9999987665
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.6e-24 Score=202.06 Aligned_cols=201 Identities=18% Similarity=0.240 Sum_probs=169.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|-..+++++++|||++||+|++|| |+|||...+-+..+..- |..++..+.+...++.+..++ -||+||.
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssS-------LDGtVRA 418 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSS-------LDGTVRA 418 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEee-------cCCeEEe
Confidence 56778999999999999999999976 89999999877666654 678888888888898888877 7899999
Q ss_pred EeCCCCcEEEEeecCCc--eEEEEEeCCeEEEE-EC-C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFRSE--VRSVKLRRDRIIVV-LE-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~--v~~v~~~~~~l~v~-~~-~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
||+...++.+++..+.+ ..|++..+...+++ ++ + .|++|++++++++-.+.+|+.|+..++|++++ ..|| +
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~--~~La-S 495 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG--SLLA-S 495 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc--CeEE-e
Confidence 99999999999988764 46677776444443 32 2 89999999999999999999999988888876 6787 6
Q ss_pred cCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
||.|.+|++|++-.. ....--.+...|..++|+|||+-||.+..||. |.+||...+.++
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq-Itf~d~~~~~q~ 555 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ-ITFFDIKEAVQV 555 (893)
T ss_pred ccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce-EEEEEhhhceee
Confidence 999999999997543 23333457788999999999999999999999 999999988765
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=3.2e-25 Score=207.71 Aligned_cols=210 Identities=14% Similarity=0.193 Sum_probs=172.8
Q ss_pred CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc-----------------------------eEEEEee-
Q 022387 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-----------------------------EIFRRDF- 124 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~-----------------------------~~~~~~~- 124 (298)
..|++...+ ..|+|+.|++|+++||.|-.+. |++|.+.+.+ ....+.+
T Consensus 370 c~YT~~nt~-~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTY-QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcC-CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 445554443 5899999999999999998865 8899776311 0011111
Q ss_pred ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEE
Q 022387 125 ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYN 200 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd 200 (298)
.|.++|..+.+.++.++|+.++ .|++||+|.+.+..++..+..+ .+|..+.|+|.....++ |++-++|.
T Consensus 449 GH~GPVyg~sFsPd~rfLlScS-------ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCS-------EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred cCCCceeeeeecccccceeecc-------CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 1778888888888888887777 6899999999999988887765 58999999987544443 57999999
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTK 279 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~D 279 (298)
....++.+.+.+|.+.+.++.|+|+. .++| +||.|.+|++||..++. +..|.+|+++|.+|+|||+|++||+|++|
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs--~Y~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNS--NYVA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred cccCCchhhhcccccccceEEECCcc--cccc-cCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999988865 8998 59999999999998764 56899999999999999999999999999
Q ss_pred CCEEEEEECCCCcEEEec
Q 022387 280 GTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 280 gt~IrIWd~~tg~~l~~~ 297 (298)
|. |+|||+.+|+++.++
T Consensus 599 ~~-I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 599 GL-IKIWDLANGSLVKQL 615 (707)
T ss_pred Cc-EEEEEcCCCcchhhh
Confidence 99 999999999987664
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.8e-24 Score=202.25 Aligned_cols=204 Identities=16% Similarity=0.239 Sum_probs=166.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
..+...|.++.|++||++|++++.+ .+++|+....+ ...... .|...+..+.+++++..++.++ .|++|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s-------~D~ti 227 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGS-------DDKTL 227 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEec-------CCceE
Confidence 3446799999999999999999764 47899996665 333322 2567788888888888666666 78999
Q ss_pred EEEeC-CCCcEEEEeecC-CceEEEEEeCCe-EEEE-E-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 159 MIWDD-HQSRCIGELSFR-SEVRSVKLRRDR-IIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 159 ~iWD~-~~~~~~~~~~~~-~~v~~v~~~~~~-l~v~-~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+|||+ ..+.++..+..+ ..|++++|+++. +++. . |++|+|||+++++++..+.+|...+..++|+.++ .+|++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~--~~l~s 305 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG--NLLVS 305 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC--CEEEE
Confidence 99999 455788888655 589999999865 3333 2 5899999999999999999999988777776654 88884
Q ss_pred ecCCCceEEEEEcCCcc---eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 234 PGLQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~---~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
++.||.|+|||..+.. ..++..+... +++++|+|+|++|++++.|++ +++||+..++++.+|
T Consensus 306 -~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 306 -ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTY 372 (456)
T ss_pred -cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeee
Confidence 7999999999999877 3477777666 999999999999999999999 999999999988776
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=200.98 Aligned_cols=197 Identities=16% Similarity=0.296 Sum_probs=162.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
...+|..++||..|++||.|+.+ .+.||++++..-++.+.. |-..+.++++++++..+++++ .||+||||
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~-------eDgKVKvW 377 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGA-------EDGKVKVW 377 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEecc-------CCCcEEEE
Confidence 34589999999999999999985 578999988665555543 566788888888888887766 78999999
Q ss_pred eCCCCcEEEEeecC-CceEEEEEeCCe--EE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 162 DDHQSRCIGELSFR-SEVRSVKLRRDR--II-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 162 D~~~~~~~~~~~~~-~~v~~v~~~~~~--l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
|..++-|+.+|..+ +.|..+.|+... ++ .+.||+|+.||+...+..++|... .++...+++.|+.|.++.+ |+.
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~A-G~~ 455 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCA-GAQ 455 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEe-ecc
Confidence 99999999999765 579999997643 22 235899999999999999998864 4555566666776677764 777
Q ss_pred Cc-eEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 238 KG-QVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 238 dg-~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
|. .|.+|+++++++. .+.+|.++|.+++|+|+|..|||+|+|.| ||+||+-..
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s 510 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSS 510 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeecc
Confidence 76 5677999998876 89999999999999999999999999999 999998754
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=177.54 Aligned_cols=194 Identities=16% Similarity=0.208 Sum_probs=158.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|..-+.|+.|-.|+.+|-..++.+..+||+++++......- |.+++..+.+.+ +++.++..+ .|+..+|
T Consensus 142 ~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~-------cD~~akl 213 (343)
T KOG0286|consen 142 AGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGG-------CDKSAKL 213 (343)
T ss_pred cCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecc-------cccceee
Confidence 5788899999999977655444456688999999988655543 678888888887 677766655 7899999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~s 234 (298)
||++.+.+.+.|..+ +.|.+|.|.|+....++ +++.++||++..+.+..+.... .++.+++|+.++ .+|. +
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG--RlLf-a 290 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG--RLLF-A 290 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc--cEEE-e
Confidence 999999999999876 58999999997766654 3799999999988888877533 345566776665 7776 4
Q ss_pred cCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
|..|..+.+||.-.. ....|.+|...|+||..+|||.-|+|||.|.+ +|||.
T Consensus 291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~-lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST-LRIWA 343 (343)
T ss_pred eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh-eeecC
Confidence 999999999997544 45589999999999999999999999999999 99994
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=175.79 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=163.1
Q ss_pred CCCCCCeEEEEEcCCCCE-EEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~-lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..+.++|+.+.|+-||+| |++|+++++++||...+..+.+... |++.+.-+...++...++.++ .|+.|.+
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G-------gDk~v~v 85 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG-------GDKAVQV 85 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC-------CCceEEE
Confidence 567789999999999998 5567778999999888777666554 677777777777777776666 4799999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcC--CCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~--~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
||+.+|+.++.+..+ ..|..+.|+..--+++. +.++++||-+ ..++++.+......+.++.++-+ .+++
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIva-- 160 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVA-- 160 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEe--
Confidence 999999999999876 58999999987555543 5799999984 57888888776666777776643 4554
Q ss_pred cCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|+.||+++.||+..+.+.. ..-..+|+|++||+||+....++.|++ +|+-|-.+|+++++|
T Consensus 161 GS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSY 221 (307)
T ss_pred eccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHh
Confidence 9999999999998776542 223458999999999999999999999 999999999998876
No 20
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.8e-24 Score=201.06 Aligned_cols=217 Identities=15% Similarity=0.188 Sum_probs=169.0
Q ss_pred CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCC
Q 022387 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (298)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
|.............|.++|+.|+|+|++.++++|++|- |+||+.++.+++++... |..=+..+.+.+.-..++.++
T Consensus 36 WDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSAS-- 112 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSAS-- 112 (1202)
T ss_pred ehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCceEEEcc--
Confidence 33333334445578899999999999999999999955 88999999999888764 455566666666666676666
Q ss_pred CCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC-eEEE-E-ECCeEEEEEcCCCeE------------------
Q 022387 149 PDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD-RIIV-V-LEQKIFVYNFADLKL------------------ 206 (298)
Q Consensus 149 ~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~-~l~v-~-~~~~I~iwd~~~~~~------------------ 206 (298)
+|.||+||+++++.++..+..+. -|.|..||+. .+++ + .|.+||+||+...+.
T Consensus 113 -----DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 113 -----DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred -----CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 78999999999999999998775 6899999983 3333 3 368999999953111
Q ss_pred -----------EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECCCCCE
Q 022387 207 -----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQL 272 (298)
Q Consensus 207 -----------i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~~ 272 (298)
.+.+.+|..-+.-++|++ ...+++ ||++|..|++|.++..+.. +.++|...|.++-|+|...+
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhp--TlpliV-SG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHP--TLPLIV-SGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecC--CcceEE-ecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 122345555555556555 446676 7999999999999866543 78999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 273 LATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 273 lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
+.|.|+|++ |||||+...+.+++|+
T Consensus 265 IlSnsEDks-irVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 265 ILSNSEDKS-IRVWDMTKRTSVQTFR 289 (1202)
T ss_pred eEecCCCcc-EEEEecccccceeeee
Confidence 999999999 9999999999998873
No 21
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=187.68 Aligned_cols=215 Identities=13% Similarity=0.142 Sum_probs=164.6
Q ss_pred CCCCCCCCCCc-ccCCCCCCeEEEEEcC-----CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCE
Q 022387 69 YQMPLPSPAES-TSSSPPPTLLHISFNQ-----DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI 141 (298)
Q Consensus 69 ~~~~~~~~~~~-~~~~~~~~V~~v~fs~-----dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (298)
++.+.....+. ....|+..|++++|.| ..++||+++.|| ++|||+....+++...- |...+.++.| .+..
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrw--GG~g 259 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRW--GGEG 259 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEE--cCCc
Confidence 44544443332 2367888999999976 677999999866 89999998888776653 4555666555 3333
Q ss_pred EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeC-------------C---------------------
Q 022387 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRR-------------D--------------------- 186 (298)
Q Consensus 142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~-------------~--------------------- 186 (298)
++..+ + .|++||+|+...|.+.++++.+. -|..++.+- +
T Consensus 260 liySg-S-----~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 260 LIYSG-S-----QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred eEEec-C-----CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 33322 2 78999999999999888887664 566666541 1
Q ss_pred ----eEEEEEC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eeeccccc
Q 022387 187 ----RIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDS 259 (298)
Q Consensus 187 ----~l~v~~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~ 259 (298)
.++.+.| .++.+|+-. ..+++.++.+|.+-+..+.|+|+ +.++| +++.|+.|++|+..+++. .+|++|-.
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd--~r~IA-SaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPD--GRYIA-SASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCC--ccEEE-EeecccceeeeeCCCcchhhhhhhccc
Confidence 3566665 699999974 45678888888777666666665 58888 699999999999988764 58999999
Q ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 260 ~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+|+.|+||.|.++|++||.|.+ +||||+++.|+...
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsT-LKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDST-LKVWDVRTKKLKQD 446 (480)
T ss_pred eeEEEEeccCccEEEEcCCCce-EEEEEeeeeeeccc
Confidence 9999999999999999999999 99999999887554
No 22
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4.7e-24 Score=177.62 Aligned_cols=206 Identities=14% Similarity=0.191 Sum_probs=160.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEe-cCCCEEEEEeCCCCCCCCCCe
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEML-FRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~ 157 (298)
.++|.++|.+|+|+.||..||+|+- +.++||+++..+.......+ |.+.+..++|. .+++.+++++ .|++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-------~dk~ 88 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-------GDKT 88 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-------CCce
Confidence 4677789999999999999999987 55889999887554444332 45556666664 4677888888 5689
Q ss_pred EEEEeCCCCcEEEEeecCCceEEEEEeCC------------------------------------------eEEEEE--C
Q 022387 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD------------------------------------------RIIVVL--E 193 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~------------------------------------------~l~v~~--~ 193 (298)
|++||.+.++++..+.....-..+.|+|+ .++..+ .
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 99999999888776654433333333332 222222 2
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCE
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQL 272 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~ 272 (298)
|.|.|......+++.+++.| +..++++.++|+|.++|+ |+.|..+.+||.+.- .+..+..|.-+|+.|.||-||++
T Consensus 169 G~v~ILsypsLkpv~si~AH--~snCicI~f~p~GryfA~-GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAH--PSNCICIEFDPDGRYFAT-GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred ceEEEEeccccccccccccC--CcceEEEEECCCCceEee-ccccceeeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 56777776677777788876 467889999999999996 999999999998754 45688899999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCcEEEec
Q 022387 273 LATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 273 lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
||+||+|.- |-|=++++|..+++.
T Consensus 246 lASaSEDh~-IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 246 LASASEDHF-IDIAEVETGDRVWEI 269 (313)
T ss_pred eeccCccce-EEeEecccCCeEEEe
Confidence 999999999 999999999998875
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-24 Score=189.76 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=148.5
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce---EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
+...|.+.|..+.||++|+|||+|+.+. ..+|.+..... ..+... |..++..+.|+++.++++.++. +
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~-------~ 290 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGF-------D 290 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCc-------h
Confidence 3467888999999999999999999855 66898755433 333333 6778999999999999988873 3
Q ss_pred CeEEEEeCCCCcEEEEeecC--CceEEEEEeCC-----------------------------------------------
Q 022387 156 NKVMIWDDHQSRCIGELSFR--SEVRSVKLRRD----------------------------------------------- 186 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~~----------------------------------------------- 186 (298)
..+++||+.+|.+...+... ..+.+++|.++
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEE
Confidence 44666666665444333222 12333333222
Q ss_pred ------------------------------------e-EE-EE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387 187 ------------------------------------R-II-VV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 187 ------------------------------------~-l~-v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
. ++ +. .++.|++||+...++++++.+|.....++.-++.+.
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 1 11 11 246888899888888888888887777777677666
Q ss_pred CeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387 228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t 290 (298)
+..+++|||.|+.|+||+...+. +.++.+|...|+||+|+|. -.+||+||+||+ ||||....
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence 64555589999999999987665 5599999999999999985 589999999999 99998764
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.7e-24 Score=194.37 Aligned_cols=204 Identities=14% Similarity=0.187 Sum_probs=176.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
..-+|+++.|-+--+++++|++|. ||||+..+.+.+...+. |..=++++.+++...++.+++ +|-+||+||
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~ 125 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWD 125 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCCeEEecC-------CccEEEEee
Confidence 345899999999999999999977 89999999998777765 677788999988888888877 789999999
Q ss_pred CCCC-cEEEEeecCC-ceEEEEEeCC---eEEE-EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 163 DHQS-RCIGELSFRS-EVRSVKLRRD---RIIV-VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 163 ~~~~-~~~~~~~~~~-~v~~v~~~~~---~l~v-~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
.+++ .+.++++.|. -|.+++|+|+ .++. +.|++|++|.+....+..++++|..-+.++++-+.+|..+|+ +|+
T Consensus 126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI-sga 204 (794)
T KOG0276|consen 126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI-SGA 204 (794)
T ss_pred ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE-ecC
Confidence 9875 5667777765 5999999974 4444 358999999999999999999999999999999988888998 699
Q ss_pred CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|-.|+|||++++. +.++.+|...|+.++|+|.-.+++|||+||+ +|||+-.|-++.+++
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTL 265 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhh
Confidence 99999999999886 4589999999999999999999999999999 999998887765543
No 25
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=8.1e-23 Score=170.77 Aligned_cols=206 Identities=13% Similarity=0.147 Sum_probs=171.3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..+|+.+++.|.+|.+|++|.+.+.|. .-||-...++.+-+..- |.+.+-++....+...+++.+ .|.+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGS-------AD~t~k 77 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGS-------ADQTAK 77 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeecc-------ccceeE
Confidence 356889999999999999999998866 56998888888777765 678888888888888777766 789999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEEC------CeEEEEEcC-------CCeEEEEEeccCCCcceEEEEe
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE------QKIFVYNFA-------DLKLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~------~~I~iwd~~-------~~~~i~~~~~~~~~~~~~~~s~ 224 (298)
|||+.+|+++..+++...|..+.|+. +.++++++ +.|.++|++ ..+++.++..+...+...- +
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~--W 155 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL--W 155 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee--e
Confidence 99999999999999999999999986 45555554 589999997 4566778887765444444 4
Q ss_pred CCCCeEEEEecCCCceEEEEEcCCcce--EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~~~~--~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
++-+..|+ +|..||.|.+||..++.. .....|...|+.|+|++|..+|+|+|.|.+ .|+||+.+-+++++|.
T Consensus 156 g~l~~~ii-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 156 GPLGETII-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT 229 (327)
T ss_pred cccCCEEE-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee
Confidence 55557777 499999999999987543 356789999999999999999999999999 9999999999999883
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=3.1e-22 Score=172.83 Aligned_cols=204 Identities=18% Similarity=0.254 Sum_probs=162.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|+.+|++++|+|++++|++|+.++ +++|++++.+....... |...+..+.+..+.+.+++++ .++.|++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i 77 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGS-------SDKTIRL 77 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEc-------CCCeEEE
Confidence 36778999999999999999999654 88999988765444443 455666677777776777766 5799999
Q ss_pred EeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
||..+++.+..+..+. .+.++.++++ .++++. ++.|++||+.+.+.+..+..|...+..++++++ +.++++ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~-~~ 154 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD--GTFVAS-SS 154 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc--CCEEEE-Ec
Confidence 9999877777766544 7999999874 444455 689999999988888888877666666666554 567764 67
Q ss_pred CCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+|.|.+|+.... ....+..|...|++++|+|++++|++++.|+. |++||+++++.+.++
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~ 215 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTL 215 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecch
Confidence 7999999999754 45578899999999999999999999999999 999999998887665
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.91 E-value=4e-23 Score=178.64 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=172.1
Q ss_pred CCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 77 ~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
.+.+-..|.+=|+||++.|-.++|++|+.|+ ++|||+.+++...+..- |...+..+.++....++..++ .|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~g-------ed 214 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAG-------ED 214 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEec-------CC
Confidence 3444567888999999999999999999855 88999999988777664 566777788888888888877 68
Q ss_pred CeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 156 NKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
+.|+-||++..+.|+.+-.+ +.|.+++.+|. .++.+. |.++++||+++...++.+.+|.+++..+.+.+- |.+++
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~-dpqvi 293 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT-DPQVI 293 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC-CCceE
Confidence 99999999999998876654 68999999974 444444 479999999999999999999999877766542 22555
Q ss_pred EEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+|+-|++|++||+..++ +.++..|+..|++++.+|....||++|.| .|+-|++..|..++.
T Consensus 294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQN 355 (460)
T ss_pred --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCCccchhhc
Confidence 59999999999987654 56899999999999999999999999988 489999999987654
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=1.3e-22 Score=171.97 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=150.3
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCC-ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
...+|++.|+.+.|+|+|.+||+|+- ..|.+|++... +-....+. |.+.+--+.+..+++.++.++ .|++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~g-------tDk~ 113 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCG-------TDKT 113 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEec-------CCce
Confidence 34678899999999999999999986 55889996432 23333443 556566666666777777777 7899
Q ss_pred EEEEeCCCCcEEEEeecCCc-eEEEEEeC-CeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387 158 VMIWDDHQSRCIGELSFRSE-VRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~~-v~~v~~~~-~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la 232 (298)
|+.||+++|++++.++.+.. |.++.-.. ...++++ ++++++||+++...++++.. .....++.+..+..-+.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---ceeEEEEEeccccccee
Confidence 99999999999999887765 44444333 2233332 47999999998888877643 23445555544444444
Q ss_pred EecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 233 ~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+|..|+.|++||.... ...++.+|..+|+.|..+|+|.++.+-++|.+ +|+||++-
T Consensus 191 -sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp 247 (338)
T KOG0265|consen 191 -SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRP 247 (338)
T ss_pred -eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecc
Confidence 5899999999999655 45699999999999999999999999999999 99999874
No 29
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=6.3e-23 Score=174.66 Aligned_cols=208 Identities=16% Similarity=0.227 Sum_probs=157.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC---------------Cce-EEEEeee-cCCceEEEEEecCCCEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP---------------FRE-IFRRDFE-RGGGIGVVEMLFRCNILA 143 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~---------------~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (298)
..|++++++.+||+||.++|+|+.|. |+|+|++. ... -..+.+. |...+..+.+.+....|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 56888999999999999999999865 88998761 111 1223332 566677777666665555
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCCcEE---EEeecCCceEEEEEeC--CeEEEEEC-CeEEEEEcCCCeEEEEEec-cCCC
Q 022387 144 LVGGGPDPQYPLNKVMIWDDHQSRCI---GELSFRSEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIET-IANP 216 (298)
Q Consensus 144 ~~~~~~~~~~~d~~v~iWD~~~~~~~---~~~~~~~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~~~~i~~~~~-~~~~ 216 (298)
.++ .|++||++|..+-... ..++-..+|.++.||| ++++++++ ..+++||+++.++...-.. ..+.
T Consensus 189 S~s-------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 189 SGS-------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred ecc-------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 544 7899999999874333 3344456899999997 56777777 6999999999888765443 2234
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEee-ccccc-ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI-MAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~-~~H~~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
..++.+..++.+.+.+ +|+.||-|++||--. +.+.++ ++|.+ .|.+..|..+|+|+.+.+.|.+ |++|.+.+|++
T Consensus 262 ~ai~~V~Ys~t~~lYv-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi~t~R~ 339 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYV-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEISTGRM 339 (430)
T ss_pred cceeEEEecCCccEEE-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeeecCCce
Confidence 4566777777778888 599999999999554 445544 57875 5999999999999999999999 99999999999
Q ss_pred EEecC
Q 022387 294 LQEGC 298 (298)
Q Consensus 294 l~~~~ 298 (298)
+++|.
T Consensus 340 l~~Yt 344 (430)
T KOG0640|consen 340 LKEYT 344 (430)
T ss_pred EEEEe
Confidence 99983
No 30
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=2.4e-21 Score=182.81 Aligned_cols=205 Identities=17% Similarity=0.235 Sum_probs=151.6
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCC-CEEEEEeCCCC
Q 022387 81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRC-NILALVGGGPD 150 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 150 (298)
..+|.+.|.+++|+| |+.+||+|+.|+ |+||++.+.. .+..... |...+..+.+.+.. +.+++++
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs---- 145 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAG---- 145 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEe----
Confidence 357888999999999 889999999866 8899997643 1222222 56778888888764 5666666
Q ss_pred CCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc-eEEEEeC
Q 022387 151 PQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQG 225 (298)
Q Consensus 151 ~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~-~~~~s~~ 225 (298)
.|++|+|||+++++.+..+..+ ..|.++.|+++. ++++. +++|++||+++++.+.++..|..... .+.+.+
T Consensus 146 ---~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~- 221 (493)
T PTZ00421 146 ---ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK- 221 (493)
T ss_pred ---CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-
Confidence 6899999999999888887744 579999998753 44443 58999999999999999888765433 334443
Q ss_pred CCCeEEEEec---CCCceEEEEEcCCc--ceEeeccc-ccceeEEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEe
Q 022387 226 VGSLVLVCPG---LQKGQVRVEHYASK--RTKFIMAH-DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 226 ~d~~~la~sG---s~dg~v~i~~~~~~--~~~~~~~H-~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~tg~~l~~ 296 (298)
++..+++.| +.|+.|++||.... ++.....| ...+....|++++++|++++. |++ ||+||+.+++++..
T Consensus 222 -~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 222 -RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFC 297 (493)
T ss_pred -CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEE
Confidence 334444334 45899999998753 23333333 345667789999999999885 998 99999999987654
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=184.71 Aligned_cols=202 Identities=10% Similarity=0.117 Sum_probs=161.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
+.+|..|.|.|+|+.|++|+..| +-+|+.......+.... |+..+..+.|+.++..++.+. .++.||+|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa-HDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA-HDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh-hcccceeEEEccCCCEEEEcC-------CCceEEeccc
Confidence 45899999999999999999977 77999865443333332 789999999999888776655 5699999998
Q ss_pred CCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 164 HQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 164 ~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
..........++ ..|.+++|+++ .++.|. +++|+|||....+.-+.+.+|.-.+.+++.++. ..++| +|+.|.
T Consensus 168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~--kgLia-sgskDn 244 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT--KGLIA-SGSKDN 244 (464)
T ss_pred chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc--cceeE-EccCCc
Confidence 765443333344 68999999863 455554 589999999888888888888766666665554 46777 699999
Q ss_pred eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
.|++||-++.. +.++.+|+..|..+.|+|++.+|+|+|.|.. +|++|+++.+.++.|+
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYR 303 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhh
Confidence 99999988765 5589999999999999999999999999999 9999999887776653
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=1.2e-23 Score=184.35 Aligned_cols=209 Identities=20% Similarity=0.214 Sum_probs=163.0
Q ss_pred CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387 69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
|+++.......+...|...|++++|+|....|+++++|+ |+|||..-.+....+.. |+-.+.+++|.+...+++.++
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgs- 241 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGS- 241 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEcc-
Confidence 333333333344455668999999999888899999876 78999876665444443 677889999988777766655
Q ss_pred CCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387 148 GPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s 223 (298)
.|+.|++||.++++|+.++..+ ..|.++.|+++ .|+.++ |..+++||++.++.+.++++|..-+..+..+
T Consensus 242 ------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~Wh 315 (464)
T KOG0284|consen 242 ------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWH 315 (464)
T ss_pred ------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccc
Confidence 6789999999999999887655 58999999875 444444 5799999999999999999988776666555
Q ss_pred eCCCCeEEEEecCCCceEEEEEcC-CcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~-~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+-. .-|.++|..||.|..|.+. .+++. .-.+|...|++|+|+|-|.+|||||.|.+ +|.|.-
T Consensus 316 P~~--~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t-~rfw~r 379 (464)
T KOG0284|consen 316 PLN--ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT-VRFWTR 379 (464)
T ss_pred ccc--ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc-eeeecc
Confidence 533 3333469999999999987 44444 34689999999999999999999999999 999974
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=183.90 Aligned_cols=203 Identities=19% Similarity=0.267 Sum_probs=158.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEc-CCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..|...|+.++|+|||+++++|++| +++||++ +....+.+..- |...+..+++.+.++.++.++ .|++|+
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs-------~D~tvr 271 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVSGS-------DDGTVR 271 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEEec-------CCCcEE
Confidence 5677899999999999999999985 4899999 44455555543 677777777777776666655 689999
Q ss_pred EEeCCCCcEEEEeecCC-ceEEEEEeCCe--EEEEE-CCeEEEEEcCCCe--EEEEEeccCCC--cceEEEEeCCCCeEE
Q 022387 160 IWDDHQSRCIGELSFRS-EVRSVKLRRDR--IIVVL-EQKIFVYNFADLK--LLHQIETIANP--KGLCAVSQGVGSLVL 231 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~-~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~--~~~~~~s~~~d~~~l 231 (298)
|||+++++++..+..+. .|.+++|+++. ++++. ++.|++||+.+++ ++..+..+..+ +..+.|+ +++.++
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~~~l 349 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS--PNGKYL 349 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC--CCCcEE
Confidence 99999999999998765 89999998753 33333 5899999999988 56777776655 4555555 455788
Q ss_pred EEecCCCceEEEEEcCCcc-eEeecccccc---eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSR---IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~-~~~~~~H~~~---V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
++ +..|+.+++|++.... ...+.+|... +.+..+++.|+++.+|+.|+. |++||+.++..+..
T Consensus 350 l~-~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 350 LS-ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQR 416 (456)
T ss_pred EE-ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhh
Confidence 74 8999999999998654 5578888774 444455789999999999999 99999998765543
No 34
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.90 E-value=2.2e-23 Score=186.11 Aligned_cols=198 Identities=14% Similarity=0.154 Sum_probs=155.6
Q ss_pred ccCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCC-ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
...+|+..|+++.|.| .+.+|++|+-|+ |+||++-.. +++.+... |...+..+.+...+..+..++ -|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~s-------fD~ 280 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSAS-------FDR 280 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeee-------cce
Confidence 3478889999999999 889999998866 789998764 44333332 677888888888888888877 789
Q ss_pred eEEEEeCCCCcEEEEeecCCceEEEEEeCCe---EEEEE-CCeEEEEEcCCCeEEEEEe---------------------
Q 022387 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL-EQKIFVYNFADLKLLHQIE--------------------- 211 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~---l~v~~-~~~I~iwd~~~~~~i~~~~--------------------- 211 (298)
.|++||+++|+++..+.....+.++.|+++. +++++ ++.|+.||+++++.++++.
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999999998889999998752 33333 4788888887654433221
Q ss_pred -------------------------------------------------------------------ccCCCcceEEEEe
Q 022387 212 -------------------------------------------------------------------TIANPKGLCAVSQ 224 (298)
Q Consensus 212 -------------------------------------------------------------------~~~~~~~~~~~s~ 224 (298)
+|......|.+.+
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 1222222666777
Q ss_pred CCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEE
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd 287 (298)
+||+.+|+ +|+.||.+.+||+++-. +..+++|++++..+.|+|. ...+||||.||. |+|||
T Consensus 441 SpDG~~l~-SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~-Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLC-SGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGL-IKIWD 503 (503)
T ss_pred cCCCCeEE-eecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCce-eEecC
Confidence 77889998 69999999999998755 4589999999999999997 489999999999 99996
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.7e-20 Score=161.89 Aligned_cols=203 Identities=17% Similarity=0.254 Sum_probs=157.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
.|...+..+.|++++++|++++.++ +++|+++..+....... |...+..+.+..+...++.++ .++.|++|
T Consensus 49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~ 120 (289)
T cd00200 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSS-------RDKTIKVW 120 (289)
T ss_pred cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEec-------CCCeEEEE
Confidence 4556788999999999999998754 88999988655444442 455677777776655554444 46899999
Q ss_pred eCCCCcEEEEee-cCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 162 DDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 162 D~~~~~~~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
|+++++.+..+. +...+.++.++++ .++++. ++.|++||+++.+.+..+..+...+..+.++++ +..+++ ++.
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~-~~~ 197 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD--GEKLLS-SSS 197 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC--cCEEEE-ecC
Confidence 999888777776 3457999999883 444444 689999999988888888877666666666554 456664 566
Q ss_pred CceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 238 dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|.|++|+..... ...+..|...|.+++|+|++.++++++.||. |++||+.+++.+.++
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~ 257 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTL 257 (289)
T ss_pred CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEc
Confidence 9999999998654 4467789999999999999999999998999 999999998877654
No 36
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=2e-20 Score=177.95 Aligned_cols=203 Identities=12% Similarity=0.127 Sum_probs=148.3
Q ss_pred cCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCce--------EEEEeeecCCceEEEEEecCCCEE-EEEeCCC
Q 022387 81 SSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--------IFRRDFERGGGIGVVEMLFRCNIL-ALVGGGP 149 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 149 (298)
...|...|.+++|+|+ +.+||+|+.|+ |+||++.+... +..... |...+..+.+.+....+ ++++
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS--- 145 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSG--- 145 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEe---
Confidence 3578889999999997 78999999866 88999975421 111221 56778888888876654 4444
Q ss_pred CCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE---
Q 022387 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS--- 223 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s--- 223 (298)
.|++|+|||+++++.+..+.+...|.++.|+++ .+++++ ++.|+|||+++++.+.++..|........+.
T Consensus 146 ----~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 146 ----FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred ----CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence 579999999999988877777778999999875 343333 5799999999999999999887655443332
Q ss_pred eCCCCeEEEEecCCC---ceEEEEEcCC--cceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 224 QGVGSLVLVCPGLQK---GQVRVEHYAS--KRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 224 ~~~d~~~la~sGs~d---g~v~i~~~~~--~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+.+++.+++++|..+ +.|+|||... +++.. +..+.+.+......++|.+|++|+.|++ ||+|++..+.
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~ 296 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS 296 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc
Confidence 235556777555544 4799999884 33333 3334444555555677999999999999 9999998774
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.3e-20 Score=189.01 Aligned_cols=196 Identities=14% Similarity=0.179 Sum_probs=146.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc----e--EEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCC
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----E--IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYP 154 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~----~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (298)
.|.+.|.+++|+|+|++||+|+.++ |+||+..... . .....+.+...+..+.+.. ....+++++ .
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~ 553 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------F 553 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------C
Confidence 3678999999999999999999855 8899975321 0 0011111234556666654 355666665 6
Q ss_pred CCeEEEEeCCCCcEEEEeecC-CceEEEEEeC-C--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387 155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR-D--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~-~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
|++|+|||+.+++.+..+..+ ..|.++.|++ + .++++. +++|++||+++++.+.++..+ ..+.++.+. .+++.
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~-~~~g~ 631 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFP-SESGR 631 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEe-CCCCC
Confidence 899999999999888887654 5799999985 2 444444 589999999999888888754 333344443 23457
Q ss_pred EEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 230 VLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
++| +|+.||.|++||..... ...+.+|...|++++|. ++.+|+|+|.|++ |+|||+..
T Consensus 632 ~la-tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~ 691 (793)
T PLN00181 632 SLA-FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSM 691 (793)
T ss_pred EEE-EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCC
Confidence 777 49999999999997643 45788999999999997 7889999999999 99999975
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.89 E-value=5e-21 Score=172.65 Aligned_cols=209 Identities=17% Similarity=0.261 Sum_probs=165.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
....|..+|+-..|+|.|.|+|+|.. +.+|||+.-..+.++..++. =.+.+.-+.|.+++..++.++.|... -+.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer---fg~ 130 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER---FGH 130 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc---eeE
Confidence 34566679999999999999999998 55999998665544444432 25788889999999999999877642 255
Q ss_pred EEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387 158 VMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la 232 (298)
+.+|| ++..+.++..++ .|.++.|.+ .+++.+.+ +.|-+|+-.-.+--.++..|.+-+.++.++|+ +.++|
T Consensus 131 ~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD--G~~Fa 206 (603)
T KOG0318|consen 131 VFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD--GSRFA 206 (603)
T ss_pred EEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC--CCeEE
Confidence 56666 566677777665 788899865 45666654 79999998777777788888776777777665 58888
Q ss_pred EecCCCceEEEEEcCCcc-eEeec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 233 CPGLQKGQVRVEHYASKR-TKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 233 ~sGs~dg~v~i~~~~~~~-~~~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+.+.||+|.+||=++.. +..|. +|++.|.+|+|+||++.|+|+|.|.+ +||||+.++++++++
T Consensus 207 -t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 207 -TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTW 273 (603)
T ss_pred -EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEe
Confidence 47889999998877654 45666 99999999999999999999999999 999999999999886
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.2e-20 Score=189.25 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=156.7
Q ss_pred CCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 85 PPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 85 ~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
...|.+++|++ ++.+||+|+.++ ++|||+.+.+.+..... |.+.+..+.+.+ ++..+++++ .|++|++|
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iW 603 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGS-------DDGSVKLW 603 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEE
Confidence 45799999997 578999998765 88999998776555543 677788888875 566677766 68999999
Q ss_pred eCCCCcEEEEeecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 162 DDHQSRCIGELSFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 162 D~~~~~~~~~~~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
|++++..+..+.....+.++.|++ ..++++. ++.|++||+++.+ .+.++..|...+..+.|. + +.+++ +|+
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~--~~~lv-s~s 679 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D--SSTLV-SSS 679 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C--CCEEE-EEE
Confidence 999999888888777899999853 3455554 5899999998765 566777787777777765 2 35666 489
Q ss_pred CCceEEEEEcCC-------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 237 ~dg~v~i~~~~~-------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.||.|++||+.. +.+.++.+|...+++++|+|++.+||+||.|++ |+||+...+..+
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~ 743 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPV 743 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCce
Confidence 999999999863 345688999999999999999999999999999 999998765443
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-20 Score=155.92 Aligned_cols=200 Identities=13% Similarity=0.190 Sum_probs=160.5
Q ss_pred cccCCCCCCeEEEEEcCC-CCEEEEEcC-CeEEEEEcCCC-ceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387 79 STSSSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPF-REIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~d-g~~lasgs~-~gi~vw~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
.....|+.+|..++|+|- |..||+++. +.+|||+.... ....+..+ .|...++.+++++.+++|+.++
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS------- 80 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS------- 80 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------
Confidence 344577789999999998 899999887 66999998742 22212111 1678899999999999998888
Q ss_pred CCCeEEEEeCCCC--cEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEe
Q 022387 154 PLNKVMIWDDHQS--RCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 154 ~d~~v~iWD~~~~--~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~ 224 (298)
.|.++.||.-..+ +++..++.+ .+|.+++|+.+ +|+.|+ ++.|-||.+. ..+++..++.|.+.+..+.++|
T Consensus 81 FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 7899999987654 577788776 58999999864 566665 4799999984 4677888888988888888877
Q ss_pred CCCCeEEEEecCCCceEEEEEcC-Cc---ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYA-SK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~-~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.. .+|+ ++++|.+|++|... .. .+.++.+|...|.+++|++.|..|+++++|++ |+||.+.
T Consensus 161 t~--dlL~-S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~ 225 (312)
T KOG0645|consen 161 TE--DLLF-SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLY 225 (312)
T ss_pred Cc--ceeE-EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeec
Confidence 64 5666 69999999997765 32 25689999999999999999999999999999 9999954
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.5e-21 Score=166.21 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=161.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|...|.++.|-|-|.+|++.+. .+|+.|+++++-++.+... |..-+.++....++.++|.++ .|.+|++
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s-------~dqtl~v 261 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCS-------NDQTLRV 261 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecC-------CCceEEE
Confidence 567779999999999999999987 6699999999988777664 455566666666666666655 7899999
Q ss_pred EeCCCCcEEEEeecCC-ceEEEEEeCC-----------------eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387 161 WDDHQSRCIGELSFRS-EVRSVKLRRD-----------------RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA 221 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~-~v~~v~~~~~-----------------~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~ 221 (298)
|=+.++++...+..++ +|-+++|-+. .+.++. |++|++||+.++.++-++.+|.+.+..++
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 9999998777766554 5666666332 233332 58999999999999999999999988888
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
|++.+ .+|+ |+.+|+++++||++.++ ++++.+|..-|++++|+.+..+++|||-|.+ +|+|.-
T Consensus 342 f~p~G--kyi~-ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt-~KvwEc 405 (406)
T KOG0295|consen 342 FSPGG--KYIL-SCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVWEC 405 (406)
T ss_pred EcCCC--eEEE-EEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce-eeeeec
Confidence 88765 8888 69999999999999876 5689999999999999999999999999999 999963
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=181.49 Aligned_cols=200 Identities=17% Similarity=0.235 Sum_probs=163.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..+|.+.|.+++|..-+.+|++|+. .+++|||+.++++...... |...+.+ +......++. |+ .|.+|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~--~~~~~~~~~s--gs-----~D~tVk 314 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRC--LTIDPFLLVS--GS-----RDNTVK 314 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEE--EEccCceEee--cc-----CCceEE
Confidence 4688899999999987789999995 6799999999998777663 3333333 3333433333 33 689999
Q ss_pred EEeCCCCcEEEEee-cCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 160 iWD~~~~~~~~~~~-~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
+||+.++.++..+. +...|.++..+.+.+++++ +++|++||+.++++++++.+|...+..+.+... ..+. +|+.
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~---~~~~-Sgs~ 390 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE---NRLL-SGSL 390 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc---ceEE-eeee
Confidence 99999999999998 7789999999988777776 589999999999999999998887776655432 3444 7999
Q ss_pred CceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 238 KGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 238 dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|+.|++||+.++ .+.++.+|.+.|..+.+ .+++|.+++.|++ ||+||..++++++++
T Consensus 391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTL 449 (537)
T ss_pred ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeee
Confidence 999999999987 56699999999977655 6789999999999 999999999999875
No 43
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.6e-20 Score=154.57 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=152.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
...|+..|++|+|+|.|++||+|+-|. +.||...... ++..++- |+..+.++.|+.++++||+++ .|+.
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCS-------RDKS 128 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCS-------RDKS 128 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEee-------CCCe
Confidence 346778999999999999999999755 6799776443 4444444 788999999999999999999 8899
Q ss_pred EEEEeCCCCc---EEEEee-cCCceEEEEEeC--CeEEEEE-CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEeCCC
Q 022387 158 VMIWDDHQSR---CIGELS-FRSEVRSVKLRR--DRIIVVL-EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 158 v~iWD~~~~~---~~~~~~-~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
|-||.+..+. ++.-++ |.+.|..+.||| +.|+.+. +++|++|+-. +.+++.++..|.+.+.+++|.+.
T Consensus 129 VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~-- 206 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI-- 206 (312)
T ss_pred EEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC--
Confidence 9999987543 444455 446899999999 5666654 7999999875 56788999998876666666554
Q ss_pred CeEEEEecCCCceEEEEEcC------------------------------------Cc---ce-----EeecccccceeE
Q 022387 228 SLVLVCPGLQKGQVRVEHYA------------------------------------SK---RT-----KFIMAHDSRIAC 263 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~------------------------------------~~---~~-----~~~~~H~~~V~~ 263 (298)
+..|+ +++.|++|+||..- .. +. +.-.+|...|++
T Consensus 207 G~rl~-s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 207 GSRLV-SCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred CceEE-EecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence 47777 48899998888711 00 00 012468889999
Q ss_pred EEECCC-CCEEEEEeCCCCEEEEEECC
Q 022387 264 FALTQD-GQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 264 l~fspd-g~~lAt~S~Dgt~IrIWd~~ 289 (298)
|+|+|. ..+|++||+||. |++|.+.
T Consensus 286 V~w~p~~~~~L~s~~DDG~-v~~W~l~ 311 (312)
T KOG0645|consen 286 VQWNPKVSNRLASGGDDGI-VNFWELE 311 (312)
T ss_pred EEEcCCCCCceeecCCCce-EEEEEec
Confidence 999995 689999999999 9999875
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.87 E-value=8.3e-21 Score=161.01 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=147.9
Q ss_pred CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
..+-+...|.+.|..+.|..|++.|++.+. +.++.||+++++..+.... |..-+..+..+-.+ ...+++++ .
T Consensus 81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg-~~lv~Sgs-----d 153 (338)
T KOG0265|consen 81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRG-PQLVCSGS-----D 153 (338)
T ss_pred cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccC-CeEEEecC-----C
Confidence 344455688999999999999998887665 6799999999988665553 33333443322222 33344444 6
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceE-----------
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLC----------- 220 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~----------- 220 (298)
|+++||||.++..+++++....+++++.|+. +....+ .++.|++||++.....+++.+|..++..+
T Consensus 154 D~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 154 DGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred CceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc
Confidence 8999999999999988887667888888864 333333 46788888887777777777666555422
Q ss_pred -------------------------------------EEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeeccccccee
Q 022387 221 -------------------------------------AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIA 262 (298)
Q Consensus 221 -------------------------------------~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~ 262 (298)
..++.+++..+. +|+.|..+.+||..... +..+.+|.+.|+
T Consensus 234 nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~-ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT-AGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc-cccccceEEEeecccccEEEEcCCcceeEE
Confidence 233334445555 48999999999998855 558999999999
Q ss_pred EEEECCCCCEEEEEeCCCCEEEE
Q 022387 263 CFALTQDGQLLATSSTKGTLVRI 285 (298)
Q Consensus 263 ~l~fspdg~~lAt~S~Dgt~IrI 285 (298)
+++|+|....|.++|.|++ |.+
T Consensus 313 ~~~Fhp~e~iils~~sdk~-i~l 334 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKT-IYL 334 (338)
T ss_pred EeeecCCCcEEEEeccCce-eEe
Confidence 9999999999999999999 765
No 45
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=159.96 Aligned_cols=206 Identities=17% Similarity=0.207 Sum_probs=162.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
...|.++|.+++|+.||+.+++|+.| .+++||+.+.+.....- |++.+..+.|....++..++.|+. |++||
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~~~cl~TGSW-----DKTlK 140 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMNYQCLVTGSW-----DKTLK 140 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeee--cccceeEEEEecCCCcceeEeccc-----cccee
Confidence 35678899999999999999988875 58999999986543333 789999999988777666667664 69999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeE-EEEEecc-CCCcceEEEEeCCCCeEEEEecC
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKL-LHQIETI-ANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~-i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs 236 (298)
.||.+....+.++..+.+|++...-...+++++ +..|.+|++++... .+.+... .-.+.++++..+.++. |+ |+
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~--al-Gs 217 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF--AL-GS 217 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce--Ee-ee
Confidence 999999999999999999999998777777776 57999999965432 2222221 1234567777777655 43 89
Q ss_pred CCceEEEEEcCC---cceEeeccccc---------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYAS---KRTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~---~~~~~~~~H~~---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+|.+.|..+.. +.-.+|++|.. +|++|+|+|....|||+|.||+ +-.||-.....|+++
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTS 289 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhcc
Confidence 999999965554 33448899973 5899999999999999999999 999998887777664
No 46
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.87 E-value=3.1e-20 Score=165.64 Aligned_cols=200 Identities=15% Similarity=0.183 Sum_probs=158.8
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce------------------------------EEEEeee--
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE------------------------------IFRRDFE-- 125 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~------------------------------~~~~~~~-- 125 (298)
.....|+.+|.++.|+.+|+||++|+.|+ +.+||..++.. ++...+.
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~ 349 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED 349 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence 34467899999999999999999999855 77998743221 1111111
Q ss_pred --------cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC----------
Q 022387 126 --------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD---------- 186 (298)
Q Consensus 126 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---------- 186 (298)
|.+.+.++.+.+.+.+|+.++ +|+|+|||......+...+..+ ..|+.+.|+|.
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~S-------dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCS-------DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEec-------CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence 556677777777788888877 7899999998887777766644 47888888763
Q ss_pred -eEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEE
Q 022387 187 -RII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACF 264 (298)
Q Consensus 187 -~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l 264 (298)
.++ ++.+++|++||+..+.++++|..|..|+..++|++++ .++| +|+.||.|.||+.++..+..-..-+..|..|
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g--~ylA-sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel 499 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG--RYLA-SGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL 499 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC--cEEE-ecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence 233 3447899999999999999999999998888888765 9999 5999999999999988766544556779999
Q ss_pred EECCCCCEEEEEeCCCCEEEEEECC
Q 022387 265 ALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 265 ~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+|+.+|.+|+.+-.|+. +.|-|++
T Consensus 500 ~Wn~~G~kl~~~~sd~~-vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGS-VCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCC-ceEEEec
Confidence 99999999999988999 9999875
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=6.9e-22 Score=170.52 Aligned_cols=193 Identities=11% Similarity=0.250 Sum_probs=152.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
+..+|.+.|.|+.|. .+.|++|+. .+++|||+++++.+-+.. .+.-.++.+.|..+++++++ .|.++
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tli---hHceaVLhlrf~ng~mvtcS-------kDrsi 299 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLI---HHCEAVLHLRFSNGYMVTCS-------KDRSI 299 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHh---hhcceeEEEEEeCCEEEEec-------CCcee
Confidence 346888899998876 458999986 558999999988765554 23445666777888888888 78999
Q ss_pred EEEeCCCCcEEE---Ee-ecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 159 MIWDDHQSRCIG---EL-SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 159 ~iWD~~~~~~~~---~~-~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
++||+.....+. -+ .+...|..+.|+.+.++.+. +.+|++|++.+.+.++++.+|...+.+..+. +.+++
T Consensus 300 aVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr----~rlvV- 374 (499)
T KOG0281|consen 300 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR----DRLVV- 374 (499)
T ss_pred EEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc----CeEEE-
Confidence 999987754221 12 23457888999998887775 5799999999999999999987655444432 25555
Q ss_pred ecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+|+.|.+|++||...+. +..+.+|..-|+||.| |.+.+++|..||+ |||||+..+.
T Consensus 375 SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk-ikvWdl~aal 431 (499)
T KOG0281|consen 375 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLQAAL 431 (499)
T ss_pred ecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce-EEEEeccccc
Confidence 79999999999998775 4589999999999999 5589999999999 9999998764
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=4.8e-21 Score=178.55 Aligned_cols=206 Identities=11% Similarity=0.159 Sum_probs=163.0
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceE----EEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREI----FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQY 153 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (298)
+-.+|...|.++....+|.+||+|+. +.+++|.++..... ..... |.+.++.++++..+ ..+++++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS------- 431 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVS------- 431 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEec-------
Confidence 55789999999997788899999997 55899977433211 11111 67888888885544 3455555
Q ss_pred CCCeEEEEeCCCCc-----EEEE-----eecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceE
Q 022387 154 PLNKVMIWDDHQSR-----CIGE-----LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLC 220 (298)
Q Consensus 154 ~d~~v~iWD~~~~~-----~~~~-----~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~ 220 (298)
.|+++++|++...+ .+.. ..|...|.+++.+++.-++++ |.+.+||++.+.....++.+|..-+.++
T Consensus 432 ~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V 511 (775)
T KOG0319|consen 432 QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV 511 (775)
T ss_pred CCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE
Confidence 78999999987622 1111 124568999999986555554 4799999999999999999998888888
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.|++.. +.+| ++|.|++|+||.+.+.. +++|.+|+..|-.+.|-.+|+.|+|++.||- ||||++.++.|+.++
T Consensus 512 ~Fs~~d--q~la-T~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl-iKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 512 SFSKND--QLLA-TCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL-IKLWNIKTNECEMTL 585 (775)
T ss_pred Eecccc--ceeE-eccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc-EEEEeccchhhhhhh
Confidence 887754 7888 59999999999998754 6799999999999999999999999999998 999999999998764
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=3e-22 Score=172.78 Aligned_cols=190 Identities=14% Similarity=0.288 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
..|+|+.+ |...+++|.. ++|+|||..+..+...... |.+.+. ++.++... +++|+ .|.+|+|||++
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVL--CLqyd~rv--iisGS-----SDsTvrvWDv~ 265 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVL--CLQYDERV--IVSGS-----SDSTVRVWDVN 265 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhc-CCCcEE--eeeccceE--EEecC-----CCceEEEEecc
Confidence 37888876 4567899987 6699999988777655542 444444 44455543 33333 67999999999
Q ss_pred CCcEEEEeecC-CceEEEEEeCCeEEEEE-CCeEEEEEcCC---CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 165 QSRCIGELSFR-SEVRSVKLRRDRIIVVL-EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 165 ~~~~~~~~~~~-~~v~~v~~~~~~l~v~~-~~~I~iwd~~~---~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
+++++.++-++ ..|..+.|+...++.+. +.+|.+||+.. ..+.+.+.+|...+.++.|+. .+++ +++.|.
T Consensus 266 tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIV-sASgDR 340 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIV-SASGDR 340 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEE-EecCCc
Confidence 99999887665 58999999999998887 47999999954 344456677877777776643 5666 689999
Q ss_pred eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
+|++|+..+.. +.++.+|...|.|+.+ .|+++++||.|.+ |||||+..|+|++
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLR 394 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLR 394 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHH
Confidence 99999998866 4589999999999987 6899999999999 9999999999875
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.5e-21 Score=173.86 Aligned_cols=203 Identities=11% Similarity=0.151 Sum_probs=167.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
+..+|.+|.|+|.--++.++--.| +.|||.++...+...+. .+-+++...+..+.+.+++.+ +|..|||++
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVfn 83 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGS-------DDMQIRVFN 83 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEec-------CCceEEEEe
Confidence 456899999999999988888655 88999999887666655 356677777777777777766 789999999
Q ss_pred CCCCcEEEEeecCC-ceEEEEEeCCeEEEE--EC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 163 DHQSRCIGELSFRS-EVRSVKLRRDRIIVV--LE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 163 ~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~--~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
..+++.+..|.-|+ -+.+++.||..-.+. .| =+|++||.. ...+.++|.+|.+.+..++|.|. |...+| |++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFa-S~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFA-SASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-Ccccee-eeec
Confidence 99999999998665 689999999754444 34 399999995 56788899999998888888875 456777 6999
Q ss_pred CceEEEEEcCCcc-eEeecccccceeEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 238 KGQVRVEHYASKR-TKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 238 dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|++|+||.+.... ..++.+|...|+||+|-+-| .+|+||++|.+ |||||+++.+|++++
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTL 223 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHh
Confidence 9999999998754 55999999999999998644 79999999999 999999999998653
No 51
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=166.68 Aligned_cols=204 Identities=10% Similarity=0.165 Sum_probs=158.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
....+.++...+....+++|+.| .+.++|....+.+...+ ++...+..+.+++....+..++ .|..|+||.
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~---Gh~kki~~v~~~~~~~~v~~aS-----ad~~i~vws 289 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK---GHTKKITSVKFHKDLDTVITAS-----ADEIIRVWS 289 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc---CcceEEEEEEeccchhheeecC-----CcceEEeec
Confidence 34478888888887899999986 68899999888776666 4555555554544443333332 678999999
Q ss_pred CCCCcEEEEe-ecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 163 DHQSRCIGEL-SFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 163 ~~~~~~~~~~-~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
+-...+.... .+..+|..+..|+ ++++.+. +++..+.|++++..+.........+...+..++||+.+++ +|..|
T Consensus 290 ~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg-tgt~d 368 (506)
T KOG0289|consen 290 VPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG-TGTPD 368 (506)
T ss_pred cccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe-ccCCC
Confidence 8765544333 4556899888876 5666665 4899999999998877665544556666667777879888 59999
Q ss_pred ceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 239 GQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 239 g~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|.|+|||++... ...|.+|+++|..|+|+.+|.|||++.+|+. |++||++.-+.+++|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTI 427 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhccccee
Confidence 999999998765 4589999999999999999999999999999 999999988877765
No 52
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-21 Score=174.99 Aligned_cols=225 Identities=20% Similarity=0.279 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEE
Q 022387 55 PDSFSPSIPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVV 133 (298)
Q Consensus 55 p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~ 133 (298)
|.+..|.+|.+.-...++ ...+....+|.+.|++|+..|.|.+||+|+++| +|||.+.+++++.+..+ .+.|.++
T Consensus 372 pe~LiPkLPsp~dLrPFP--t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~v 447 (733)
T KOG0650|consen 372 PESLIPKLPSPKDLRPFP--TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSV 447 (733)
T ss_pred HHHhcccCCChhhcCCCc--ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEE
Confidence 555666666544444333 345566688999999999999999999999977 88999999999998888 7889999
Q ss_pred EEecCCC--EEEEEeCCCC----C---------------------CCCCCeEEEEeCCC---Cc--EEEEeecCCce---
Q 022387 134 EMLFRCN--ILALVGGGPD----P---------------------QYPLNKVMIWDDHQ---SR--CIGELSFRSEV--- 178 (298)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~----~---------------------~~~d~~v~iWD~~~---~~--~~~~~~~~~~v--- 178 (298)
.|.+.++ .+|++.+... . ...+.++..|.-.. ++ .-..+.+...|
T Consensus 448 aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred EecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 9987654 3444433220 0 11245566775331 11 11122333333
Q ss_pred ------------------------------------------EEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccC
Q 022387 179 ------------------------------------------RSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIA 214 (298)
Q Consensus 179 ------------------------------------------~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~ 214 (298)
.++.||+ -.+++++...|+|||+....+++++.+..
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC
Confidence 3444443 27888889999999998888888888888
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
..+..+++++.+|+.++ |+.|+.++++|+.. ++.++++-|..+|++|+|++.-.+||+||.||+ +.||.
T Consensus 608 kwiS~msihp~GDnli~---gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfh 678 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLIL---GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFH 678 (733)
T ss_pred eeeeeeeecCCCCeEEE---ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEe
Confidence 88889999998875443 79999999988765 477899999999999999999999999999999 88885
No 53
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-19 Score=146.84 Aligned_cols=204 Identities=14% Similarity=0.173 Sum_probs=154.8
Q ss_pred CCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEE--EEcCCCc---eEEEEeeecCCceEEEEEecC----CCEEEEEe
Q 022387 77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRI--YNCDPFR---EIFRRDFERGGGIGVVEMLFR----CNILALVG 146 (298)
Q Consensus 77 ~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~v--w~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 146 (298)
.......|++.|+|++|+|+|++||+|++ +.|++ |+.++.+ ....... |++.+.-+++.-+ +..++.++
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecC
Confidence 34455678899999999999999999998 45775 4555432 2223333 6888887777533 23344433
Q ss_pred CCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEE-EeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-----cc
Q 022387 147 GGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVK-LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-----KG 218 (298)
Q Consensus 147 ~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~-~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-----~~ 218 (298)
. .|.+|.+-|..+++..+.+..+ +.|.++. |+.-.++... +.+|++||++-..++.++....+. ..
T Consensus 160 a------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 160 A------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred C------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 3 3688889999999988888765 5788876 4444444444 479999999988888887653322 23
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+.+++.+|.+.+|| +|..|..+.+||+....+ ..+..|+..|+|+.|||...||.|+|.|.. ||+=|++
T Consensus 234 vaav~vdpsgrll~-sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq 303 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLA-SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ 303 (350)
T ss_pred eEEEEECCCcceee-eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc
Confidence 55777788889998 699999999999987764 579999999999999999999999999999 9999976
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=175.28 Aligned_cols=202 Identities=11% Similarity=0.180 Sum_probs=166.0
Q ss_pred CcccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----eEEEEe---eecCCceEEEEEecCCCEEEEEeC
Q 022387 78 ESTSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----EIFRRD---FERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 78 ~~~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+....+|.+.|.+|+++..| .+|++++.|. +++|++...+ ..+... ..|++++.+++..++..++|+++
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S- 482 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS- 482 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc-
Confidence 33447888999999998766 5899998865 8899886521 111111 11899999999999998888888
Q ss_pred CCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s 223 (298)
.|++.+||++...+....+..|. .|.+|.|++. .++.+. |.+|+||.+.++.++++|.+|...+.-+.|-
T Consensus 483 ------qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~ 556 (775)
T KOG0319|consen 483 ------QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI 556 (775)
T ss_pred ------cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee
Confidence 89999999999888888888775 7999999985 444443 5799999999999999999999888877777
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
.++ ..|+ |+..||.+++|+.+++. +.++.+|+..|++++-+|.+..|+||+.||. |.+|.=-|
T Consensus 557 ~~~--~qli-S~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wkD~T 620 (775)
T KOG0319|consen 557 RNG--KQLI-SAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWKDVT 620 (775)
T ss_pred eCC--cEEE-eccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEeecCc
Confidence 654 5565 68999999999999875 5699999999999999999999999999999 98997443
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.86 E-value=6.4e-20 Score=159.16 Aligned_cols=209 Identities=19% Similarity=0.224 Sum_probs=158.5
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
.....|+..|+++.||.||.|||+|.-+| ++||.+.++........ ....+..+.|++....++..+ .||.
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~illAG~-------~DGs 171 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILLAGS-------TDGS 171 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEEeec-------CCCc
Confidence 33468899999999999999999998766 78999999887655532 256788888888776666555 6899
Q ss_pred EEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCC---------CcceE----
Q 022387 158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIAN---------PKGLC---- 220 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~---------~~~~~---- 220 (298)
+-.|.+.++...+.+..+ .++.+-.|.++ +++.+. +++|++||..++++++++....+ ..+..
T Consensus 172 vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 172 VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 999999986655566554 47888777764 444443 68999999999999888762110 00000
Q ss_pred ----------------EEE-----------------------eCCCCeEEEEecCCCceEEEEEcCCcceEeecccccce
Q 022387 221 ----------------AVS-----------------------QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (298)
Q Consensus 221 ----------------~~s-----------------------~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V 261 (298)
..+ ....-.+.|+ |+-||+|.|||+....+...-.|...|
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~-G~vdG~i~iyD~a~~~~R~~c~he~~V 330 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC-GSVDGTIAIYDLAASTLRHICEHEDGV 330 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc-ccccceEEEEecccchhheeccCCCce
Confidence 000 1111234443 888999999999988888888899999
Q ss_pred eEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 262 ~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
..+.|-+ -.+|+|++.||+ ||+||.++|+++++|.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYT 365 (399)
T ss_pred EEEEEcC-cchheeeccCce-EEeeeccccceEEEEe
Confidence 9999999 788999999999 9999999999999884
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.4e-20 Score=164.21 Aligned_cols=199 Identities=17% Similarity=0.259 Sum_probs=153.8
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
..|+++.|-.||++||+|.+-| ++|||+.+...+..... |...+..+.+++..+.++..+ + +|+.+++||+.
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~-s-----Dd~v~k~~d~s 141 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSG-S-----DDKVVKYWDLS 141 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEec-C-----CCceEEEEEcC
Confidence 4799999999999999999966 78999766433333322 688888998888777665544 3 57899999999
Q ss_pred CCcEEEEeecCC-ceEEEEEeCC--eEEEEE--CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 165 QSRCIGELSFRS-EVRSVKLRRD--RIIVVL--EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 165 ~~~~~~~~~~~~-~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
+.....++..+. -|.+.++++. .+++.+ |+.|++||++.. ..+.++. |..|+..+.+-+.+ .++|.+| .
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg--s~iasAg--G 216 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG--SLIASAG--G 216 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC--CEEEEcC--C
Confidence 988765666654 6899999863 455544 699999999876 5666655 56777777776654 6777433 3
Q ss_pred ceEEEEEcCCc-ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 239 GQVRVEHYASK-RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 239 g~v~i~~~~~~-~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..|+|||+..+ ++. .+..|...|+|+++..++..|.|||-|+. |||||+.+-|.++.+
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSW 276 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEee
Confidence 58999999844 443 44459999999999999999999999999 999999998888764
No 57
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.6e-20 Score=156.07 Aligned_cols=202 Identities=17% Similarity=0.251 Sum_probs=154.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|..++.+++|.++.+ +++|+ ++.++.+|+.+........ |+..+.+++.....+.++.++ =|++|++
T Consensus 51 ~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igt--h~~~i~ci~~~~~~~~vIsgs-------WD~~ik~ 120 (323)
T KOG1036|consen 51 FKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGT--HDEGIRCIEYSYEVGCVISGS-------WDKTIKF 120 (323)
T ss_pred eecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeecc--CCCceEEEEeeccCCeEEEcc-------cCccEEE
Confidence 45666999999998665 55555 4559999999987765555 688899998886666555544 3699999
Q ss_pred EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccC--CCcceEEEEeCCCCeEEEEecCC
Q 022387 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~--~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
||.+.......+.....|.++....+.|++++ +..|.+||+++.....+..... -+..++++-+.. .-+|+ ++.
T Consensus 121 wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~--eGy~~-sSi 197 (323)
T KOG1036|consen 121 WDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG--EGYVV-SSI 197 (323)
T ss_pred EeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC--CceEE-Eee
Confidence 99998777777777779999999999999966 5799999999876544322211 233455555533 44443 899
Q ss_pred CceEEEEEcCCc-----ceEeeccccc---------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 238 KGQVRVEHYASK-----RTKFIMAHDS---------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 238 dg~v~i~~~~~~-----~~~~~~~H~~---------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|.|.+..++.. +-..|++|.. +|++|+|+|-...||||+.||. |.+||+.+.|.+++|
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQL 270 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhc
Confidence 999999666543 2337888853 7999999999999999999998 999999999988776
No 58
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=9.8e-20 Score=151.06 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=133.0
Q ss_pred EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc--EEEEeecC
Q 022387 99 CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELSFR 175 (298)
Q Consensus 99 ~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--~~~~~~~~ 175 (298)
+||+++- .+||+|...++.+..+... .++.+..+++.++...+|.++ ...||+||++++. .+.+++.+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence 6888875 6799999999998877765 367788888888888888876 3679999999864 56777766
Q ss_pred -CceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC--------------------------
Q 022387 176 -SEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------------------------- 225 (298)
Q Consensus 176 -~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~-------------------------- 225 (298)
..|.++.|+.+.- ..++ ||+++|||++...+.+.++. ..++..+.++++
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 5799999987543 3333 48999999998665554442 344444444433
Q ss_pred ---------------CCCeEEEEecCCCceEEEEEcCCc-------ceEeecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 226 ---------------VGSLVLVCPGLQKGQVRVEHYASK-------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 226 ---------------~d~~~la~sGs~dg~v~i~~~~~~-------~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
+|+.+++. +...|.+.+|++... ++..+++|++.+..+-||||++||||+|.|.+ +
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a-~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v 239 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAA-ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-V 239 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEE-ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-E
Confidence 33344442 444455555544321 23468899999999999999999999999999 9
Q ss_pred EEEECCCC
Q 022387 284 RIFNTLDG 291 (298)
Q Consensus 284 rIWd~~tg 291 (298)
|||+.++-
T Consensus 240 ~iwn~~~~ 247 (311)
T KOG0315|consen 240 KIWNTDDF 247 (311)
T ss_pred EEEecCCc
Confidence 99999876
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=5.8e-20 Score=171.69 Aligned_cols=205 Identities=17% Similarity=0.214 Sum_probs=162.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee------------------------------------
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE------------------------------------ 125 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~------------------------------------ 125 (298)
.+|++.|++++||.|...+++|+.+.++||+.++.+++.+....
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence 67899999999999999999999999999999877665544320
Q ss_pred ---cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-------C-c-----EEEEeecCCceEEEEEeCCe--
Q 022387 126 ---RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-------S-R-----CIGELSFRSEVRSVKLRRDR-- 187 (298)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-------~-~-----~~~~~~~~~~v~~v~~~~~~-- 187 (298)
|++.+..+...+++..+++++ .|++|++||..- . + ..+++++...|.|+.++|+.
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~s-------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGS-------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhccccceeeeeecCCCCceEEec-------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 233333333334444444444 689999999531 1 1 12456677899999999864
Q ss_pred EEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEE
Q 022387 188 IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA 265 (298)
Q Consensus 188 l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~ 265 (298)
++++ .+++|+||-+.+.+..-++.+|.-|+.++.++++. .+++ +|+.|+.|+||-++.+... .+-+|...|.+|.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS--kliv-TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS--KLIV-TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc--CeEE-eccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 3333 37999999999999999999999999999999986 7777 5999999999999988765 8999999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 266 fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|-|+..+|.|+|.|+. ||-||-..-++++++
T Consensus 600 F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKL 630 (888)
T ss_pred EcccceeEEEecCcce-EEeechhhhhhheee
Confidence 9999999999999999 999998777666554
No 60
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=7.4e-20 Score=155.05 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=154.2
Q ss_pred cccCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc------------eEEEEeee--cCCceEEEEEecCCCEE
Q 022387 79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR------------EIFRRDFE--RGGGIGVVEMLFRCNIL 142 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~~~~~ 142 (298)
.+.+.|++.|+++.+.+ .|+|+.+|+.|| +.|||++... +...+... |.-.+..+.|-+-...+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34577888999999997 799999999877 6699986432 11111111 33345555554444444
Q ss_pred EEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC-----eEEEEEC-CeEEEEEcCCCeEEEEEeccCCC
Q 022387 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-----RIIVVLE-QKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 143 ~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-----~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
.+.+ + -|+++||||..+-|....|++...|++-++++- .+++++. -.|++-|+..+..-+++.+|...
T Consensus 117 Ftss-S-----FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 117 FTSS-S-----FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG 190 (397)
T ss_pred eecc-c-----ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence 4433 1 689999999999999999999998988777652 3444444 59999999999999999998775
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-------------ce---EeecccccceeEEEECCCCCEEEEEeCCC
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------RT---KFIMAHDSRIACFALTQDGQLLATSSTKG 280 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-------------~~---~~~~~H~~~V~~l~fspdg~~lAt~S~Dg 280 (298)
+ +++.+.+...++.++|+.||.|++||+... .. ++-.+|.+.|+.+||+.||.++++++.|.
T Consensus 191 v--laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 191 V--LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred e--EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 5 555555555777778999999999997521 11 12357889999999999999999999999
Q ss_pred CEEEEEECCCCcE
Q 022387 281 TLVRIFNTLDGTL 293 (298)
Q Consensus 281 t~IrIWd~~tg~~ 293 (298)
. +|+|+..+|+-
T Consensus 269 r-~r~wn~~~G~n 280 (397)
T KOG4283|consen 269 R-IRVWNMESGRN 280 (397)
T ss_pred c-eEEeecccCcc
Confidence 9 99999998853
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=171.88 Aligned_cols=197 Identities=15% Similarity=0.232 Sum_probs=160.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEE-EeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFR-RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
+...+.+..|. +.++++|+. ..+++|+..+...+.. ..- |.+.+..+++....+.++.++ .|+++++|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS-------~D~t~rvW 276 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGS-------TDKTERVW 276 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEe-------cCCcEEeE
Confidence 45578888888 456777877 5577999999887666 333 677777777766677777776 78999999
Q ss_pred eCCCCcEEEEeecCC-ceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 162 DDHQSRCIGELSFRS-EVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 162 D~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
|..+++|+..+..+. .|.++...+..+..+ .+.+|++|++.+++.++.+.+|..++.++.+.. .+++ +|+.||
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~----~~lv-sgs~d~ 351 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE----PLLV-SGSYDG 351 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC----CEEE-EEecCc
Confidence 999999999999664 667777666666653 478999999999999999998888887777762 5565 599999
Q ss_pred eEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEec
Q 022387 240 QVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEG 297 (298)
Q Consensus 240 ~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg-~~l~~~ 297 (298)
+|.+|+....+ ++++.+|...|.++.+... .++.+||.|++ ||+||++++ +|+++|
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTL 409 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhh
Confidence 99999988654 6699999999999988776 89999999999 999999999 888765
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=6.2e-20 Score=173.56 Aligned_cols=203 Identities=18% Similarity=0.260 Sum_probs=140.0
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc----------------------------e--E-----EE--
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR----------------------------E--I-----FR-- 121 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~----------------------------~--~-----~~-- 121 (298)
+...|.+.|.++.||+||+|||+|++|+ |+||.+...+ . . ..
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 3348889999999999999999999988 5699764300 0 0 00
Q ss_pred ---------------------Eeee-cCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCce
Q 022387 122 ---------------------RDFE-RGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV 178 (298)
Q Consensus 122 ---------------------~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v 178 (298)
.++. |.++ ++.+++..+ .|+.++ .|+|||||++....|+..|.|..-|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~D--ILDlSWSKn~fLLSSS-------MDKTVRLWh~~~~~CL~~F~HndfV 412 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTAD--ILDLSWSKNNFLLSSS-------MDKTVRLWHPGRKECLKVFSHNDFV 412 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchh--heecccccCCeeEecc-------ccccEEeecCCCcceeeEEecCCee
Confidence 0000 2222 233333333 334444 7999999999999999999999999
Q ss_pred EEEEEeC--C-eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--
Q 022387 179 RSVKLRR--D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-- 252 (298)
Q Consensus 179 ~~v~~~~--~-~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-- 252 (298)
+||+|+| + +++.+ .|++||||+|.+.+.+.-...+ ..+..+++. |||+..++ |+.+|.+++|+....++.
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avI-Gt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVI-GTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEE-EEeccEEEEEEccCCeEEEe
Confidence 9999997 3 33333 4799999999887765444433 334444555 45577765 999999999998765432
Q ss_pred -ee-------cccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 253 -FI-------MAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 253 -~~-------~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+ ..|. .|+.+.|.|.. ..+...|.|.. |||+|.++.++++.|
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKF 540 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhh
Confidence 11 1233 79999999753 33555567998 999999877766554
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=5.8e-20 Score=152.78 Aligned_cols=203 Identities=15% Similarity=0.140 Sum_probs=149.9
Q ss_pred ccCCCCCCeEEEEEcCCCC-EEEEE-cCCeEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHG-CFAAG-TDHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~-~lasg-s~~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
.+..-...+..|+|++... .++++ +++.++|||..... .+...+- |..++..+.+....+...+.+ + =|+
T Consensus 55 ~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~lts-S-----WD~ 127 (311)
T KOG0277|consen 55 QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTS-S-----WDG 127 (311)
T ss_pred EeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEee-c-----cCC
Confidence 3344556899999998653 44444 45669999964322 2222221 567788888765555444444 3 379
Q ss_pred eEEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 157 KVMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
+|||||...++.+.++..+. .|+...|++ +.++.+ +++++++||++.......|..|...+.+|.++... ..++
T Consensus 128 TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~-~~vl 206 (311)
T KOG0277|consen 128 TIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN-HNVL 206 (311)
T ss_pred ceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC-CcEE
Confidence 99999999999999888764 788899986 445444 46899999996544444488888788888888653 3566
Q ss_pred EEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCc
Q 022387 232 VCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+ +|+.|+.|++||+.+-+ +..+.+|.-+|+.|+|||- ..+|||+|.|-+ +||||...+.
T Consensus 207 ~-Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~d 268 (311)
T KOG0277|consen 207 A-TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQD 268 (311)
T ss_pred E-ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccch
Confidence 6 59999999999998643 5588999999999999997 589999999999 9999988553
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=148.06 Aligned_cols=215 Identities=16% Similarity=0.163 Sum_probs=164.0
Q ss_pred CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387 69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+|++..........+|...|..++.+.|...||+++. +.+.+||+.+++...++.- |.+.+. .+.|+...-++++|
T Consensus 43 LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVN--tV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 43 LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVN--TVRFNEESSVVASG 119 (307)
T ss_pred eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccc-ccceee--EEEecCcceEEEec
Confidence 5666666666666788889999999999988887765 5578999999988655542 344444 44555555556665
Q ss_pred CCCCCCCCCeEEEEeCCCC--cEEEEeec-CCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387 148 GPDPQYPLNKVMIWDDHQS--RCIGELSF-RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~--~~~~~~~~-~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s 223 (298)
+ .|.++++||.++. +.++.+.. ...|.++......++... +|+++.||++.++....+- .+|+.+++|+
T Consensus 120 s-----fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s 192 (307)
T KOG0316|consen 120 S-----FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFS 192 (307)
T ss_pred c-----ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEec
Confidence 5 6899999999875 46666654 357899999887777654 7999999999998766554 3578888888
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+++ ..|| |+-|+++++-|.++++ +...++|... =..++++..-..+++||+||. |.+||+..++++-.+
T Consensus 193 ~d~n-c~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~-Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 193 KDGN-CSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK-VYFWDLVDETQISKL 265 (307)
T ss_pred CCCC-EEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce-EEEEEeccceeeeee
Confidence 8763 4554 7999999998777665 4588999753 455678888899999999999 999999999887554
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=3.4e-21 Score=165.02 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=119.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+.++.+-|..|||||+||++|+.||+ .|||.-+++...-.... . .|+ ...
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-----------A----------------qd~-fMM 261 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-----------A----------------QDN-FMM 261 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh-----------h----------------hcc-eee
Confidence 456678999999999999999999995 59998877542111110 0 000 111
Q ss_pred EeCCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
-| ..|.|+.|+++.-.+++ +|.|++|.++++++++.|. .|...+.++.|+. |+..+. +++
T Consensus 262 md-------------~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiL-S~s 325 (508)
T KOG0275|consen 262 MD-------------DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQIL-SAS 325 (508)
T ss_pred cc-------------cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--Ccchhh-ccc
Confidence 11 03455555554322221 3566666666666666665 3444344444444 445555 589
Q ss_pred CCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 237 QKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 237 ~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
.|-+++|.-++.++ ++.+++|++.|+...|.+||.+++++|.||+ ||||+..+++|+.+|.
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFK 387 (508)
T ss_pred ccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhcc
Confidence 99999998888655 5699999999999999999999999999999 9999999999998873
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-19 Score=172.66 Aligned_cols=196 Identities=16% Similarity=0.208 Sum_probs=158.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
.++|.+++|+|..-+|.++-..| |++||..-+..+.+..- |++++..+.+.+...+++.+| +|.+|+||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGG-------DDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGG-------DDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecC-------CccEEEEEec
Confidence 35899999999999999999866 78999876655444433 799999999988887665544 6799999999
Q ss_pred CCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 164 HQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 164 ~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
.+.+|+.++..+ .-|..+.||+.. ++.+. |++|+||+..+.+++..+.+|.+.+.+..|++.. .+++ |+|-|.
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE--DlIV-SaSLDQ 157 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE--DLIV-SASLDQ 157 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc--ceEE-Eecccc
Confidence 999998887665 468889999864 44444 4799999999999999999998877666666653 5555 799999
Q ss_pred eEEEEEcCC----------------------------cc-eE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 240 QVRVEHYAS----------------------------KR-TK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 240 ~v~i~~~~~----------------------------~~-~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+|+|||... .. ++ .+.+|+..|+-++|+|.-.+|+||++|+. ||+|.+.
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrmn 236 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRMN 236 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEec
Confidence 999999651 00 12 57899999999999999999999999998 9999987
Q ss_pred CCc
Q 022387 290 DGT 292 (298)
Q Consensus 290 tg~ 292 (298)
.-+
T Consensus 237 etK 239 (1202)
T KOG0292|consen 237 ETK 239 (1202)
T ss_pred ccc
Confidence 544
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-18 Score=144.83 Aligned_cols=201 Identities=10% Similarity=0.142 Sum_probs=137.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
...|.++.|+.+|.+|++.++ |.++|||+..++.+.+... ++.++..+++....+.++.++.. .|.+||..++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl 87 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSL 87 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCC-----CCCceEEEEe
Confidence 458999999999999998776 6899999999887666654 35577788887777766666543 3577888888
Q ss_pred CCCcEEEEeecCC-ceEEEEEeCC---eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 164 HQSRCIGELSFRS-EVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 164 ~~~~~~~~~~~~~-~v~~v~~~~~---~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
.+.+.++.+..|. .|..+..+|. ++..+.|++|++||++..++..-+..... .++++ ||+|.++|+ |...+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~Af--Dp~GLifA~-~~~~~ 162 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAF--DPEGLIFAL-ANGSE 162 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeE--CCCCcEEEE-ecCCC
Confidence 8888888887664 6777877762 23333467888888876665544443222 22333 344456654 44444
Q ss_pred eEEEEEcC------------------------------------------------CcceEeecccccc---eeEEEECC
Q 022387 240 QVRVEHYA------------------------------------------------SKRTKFIMAHDSR---IACFALTQ 268 (298)
Q Consensus 240 ~v~i~~~~------------------------------------------------~~~~~~~~~H~~~---V~~l~fsp 268 (298)
.|+++|++ .....++..|... --..+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 66666532 1112233333222 24668999
Q ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
||+++.+|+.||+ |.||++++|+.+..+
T Consensus 243 ds~Fvl~gs~dg~-i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 243 DSKFVLSGSDDGT-IHVWNLETGKKVAVL 270 (311)
T ss_pred CCcEEEEecCCCc-EEEEEcCCCcEeeEe
Confidence 9999999999999 999999999987654
No 68
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.83 E-value=1.9e-18 Score=156.19 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=162.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
+.|..-|+|+.|+|||+++|+.+.| .+.+||-.+++.+...+- .|.+++..+.|++++..+++++ .|+++
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-------aDkt~ 259 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-------ADKTI 259 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-------CCceE
Confidence 5666799999999999999987764 488999999888766652 2889999999999999999999 78999
Q ss_pred EEEeCCCCcEEEEeecCCce----EEEEEeCCeEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 159 MIWDDHQSRCIGELSFRSEV----RSVKLRRDRII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~~~v----~~v~~~~~~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
||||+.+..++.++.....| ..+.|..+.++ +..+|.|.+++..+...++.+.+|...+.+..+++++ .+|.
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~- 336 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIY- 336 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC--CEEE-
Confidence 99999999999998876532 23334455555 4567999999999999999999999888777777765 6666
Q ss_pred ecCCCceEEEEEcCCcceEee--cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~--~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+|+.||.|.-|+......-.+ +.|+..|.+|+-+..+. +.|.|+|.+ +|+.++..+
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~-l~~~~~~~~ 394 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDT-LRVISLKDN 394 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCe-EEEEecccC
Confidence 699999999999987765544 78999999999887665 667789999 999987543
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=8.2e-19 Score=158.16 Aligned_cols=200 Identities=14% Similarity=0.227 Sum_probs=141.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEE--EEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIF--RRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
..|...|.++++.|.|-.|++|+- -.+++||..-..... -+.+. ..+.+..+.++..++.+++++|. .
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-------a 236 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-------A 236 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-------c
Confidence 345568999999999999999996 558999985432110 11111 46778899999988888887754 5
Q ss_pred eEEEEeCCCCcEEEE---------ee----cCCceEEEEEeCC---eEEE-EECCeEEEEEcCCCe-EEEEEecc-----
Q 022387 157 KVMIWDDHQSRCIGE---------LS----FRSEVRSVKLRRD---RIIV-VLEQKIFVYNFADLK-LLHQIETI----- 213 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~---------~~----~~~~v~~v~~~~~---~l~v-~~~~~I~iwd~~~~~-~i~~~~~~----- 213 (298)
..+|+|..-.+.+.. +. |-..+.+.+||++ .++. +.++++||||+.+.+ ....|++.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 688888654332221 11 1235677889874 3444 457999999996543 33334331
Q ss_pred CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
.-++.+|++++ |+.+|| +|-.||.|.+|+..... ...-++|.. .|+||+||+||++|+|-|.|++ +||||
T Consensus 317 Rv~~tsC~~nr--dg~~iA-agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWD 392 (641)
T KOG0772|consen 317 RVPVTSCAWNR--DGKLIA-AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWD 392 (641)
T ss_pred ccCceeeecCC--Ccchhh-hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeee
Confidence 12345566555 558888 49999999999975432 335678988 8999999999999999999999 99999
Q ss_pred CCCCc
Q 022387 288 TLDGT 292 (298)
Q Consensus 288 ~~tg~ 292 (298)
++.-+
T Consensus 393 Lrq~k 397 (641)
T KOG0772|consen 393 LRQFK 397 (641)
T ss_pred ccccc
Confidence 99743
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=159.10 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=152.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+..++|+.+.|.++++++++++. +.+++|+++..+...+... |...+..+.+...... +++|+ .|.+||+
T Consensus 216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~~--vVsgs-----~DRtiK~ 287 (459)
T KOG0288|consen 216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHSR--VVSGS-----ADRTIKL 287 (459)
T ss_pred hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhccccc--eeecc-----ccchhhh
Confidence 344568999999999997666665 5589999998887666654 5666666665433332 34433 6899999
Q ss_pred EeCCCCcEEEEeecCCceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
||+++..|..++-..+.+..+..+...++.. .+++|++||++...+..++..+. .+.++.+++++ .-+. +.+-|.
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g--~~lL-sssRDd 363 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG--LELL-SSSRDD 363 (459)
T ss_pred hhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC--eEEe-eecCCC
Confidence 9999999998887777777777764333333 36899999999999998888765 45666666654 5444 358899
Q ss_pred eEEEEEcCCcceE-eecc----cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 240 QVRVEHYASKRTK-FIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 240 ~v~i~~~~~~~~~-~~~~----H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+.+.|..+..+. .+.+ -...++.+.|||++.|+|+||.||. |+||++.+||+.+..
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVL 425 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEe
Confidence 9999998877654 3332 1234999999999999999999999 999999999987643
No 71
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.3e-19 Score=156.77 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=153.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
-+++|.+++-+|+|.||+.|+..+ +.+|.+.++..+..+.- |-..+.++.++-++..+++++ .||.|.+|+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~ 151 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIITGS-------KDGAVLVWL 151 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEecC-------CCccEEEEE
Confidence 456899999999999999998755 88999999987666543 778899999888888777766 789999998
Q ss_pred CCC---------CcEEEEeecCC-ceEEEEEeCC----eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387 163 DHQ---------SRCIGELSFRS-EVRSVKLRRD----RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 163 ~~~---------~~~~~~~~~~~-~v~~v~~~~~----~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
+.. -..+..+..|. +|..+..... +++.+ .|.++++||+..+.++.++... .+..++++.+..
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae- 229 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAE- 229 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccc-
Confidence 532 23444555444 6777766432 44444 4689999999999988887643 335566666553
Q ss_pred CeEEEEecCCCceEEEEEcCC-----------------cceEeeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 228 SLVLVCPGLQKGQVRVEHYAS-----------------KRTKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~-----------------~~~~~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
..+.+ |+.+|.|.+-++.. .+...+.+|.. +|+|+++|-||.+|++|+.||+ |.|||+
T Consensus 230 -~~~yi-Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi 306 (476)
T KOG0646|consen 230 -RVVYI-GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDI 306 (476)
T ss_pred -cEEEe-cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEec
Confidence 44443 99999999955431 12347889988 9999999999999999999999 999999
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
.+.+|+++.
T Consensus 307 ~S~Q~iRtl 315 (476)
T KOG0646|consen 307 YSKQCIRTL 315 (476)
T ss_pred chHHHHHHH
Confidence 999988763
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.1e-19 Score=163.06 Aligned_cols=196 Identities=17% Similarity=0.224 Sum_probs=150.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
+..|+++.|+++|.+||+|..+| +.|||....+........|...+++++|. ...+...+ .++.|.++|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs-------r~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS-------RDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec-------CCCcEEEEEE
Confidence 78999999999999999999977 67999988776555543245566666664 43333333 5799999999
Q ss_pred CCCcEEEE-ee-cCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 164 HQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 164 ~~~~~~~~-~~-~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
+..+.+.. +. +.+.|..+.|+++....+. |+.+.|||....+++.++..|...+..++++|...+.+-...|+.|
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D 367 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD 367 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcc
Confidence 98765544 54 4468999999886544443 5799999998888999999998888888888876543333335668
Q ss_pred ceEEEEEcC--------------------------------------------CcceEeecccccceeEEEECCCCCEEE
Q 022387 239 GQVRVEHYA--------------------------------------------SKRTKFIMAHDSRIACFALTQDGQLLA 274 (298)
Q Consensus 239 g~v~i~~~~--------------------------------------------~~~~~~~~~H~~~V~~l~fspdg~~lA 274 (298)
+.|++|+.. .+.+..+.+|...|-.+++||||..++
T Consensus 368 ~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 368 RCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred cEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 888888732 112336789999999999999999999
Q ss_pred EEeCCCCEEEEEECCC
Q 022387 275 TSSTKGTLVRIFNTLD 290 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~t 290 (298)
||+.|.+ +|+|++-.
T Consensus 448 t~a~DET-lrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADET-LRFWNLFD 462 (484)
T ss_pred EecccCc-EEeccccC
Confidence 9999999 99999876
No 73
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.82 E-value=1.3e-18 Score=150.85 Aligned_cols=195 Identities=11% Similarity=0.157 Sum_probs=155.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
++|-+.|+|++.+|.-+.|++|+.|. +||||+.+...++...- |...+..+.+.+....+++++ .|.+|++
T Consensus 232 hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpqvit~S-------~D~tvrl 303 (460)
T KOG0285|consen 232 HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQVITGS-------HDSTVRL 303 (460)
T ss_pred ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCceEEec-------CCceEEE
Confidence 67778999999999999999999865 78999999888777764 566777776655455556655 7899999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeCCeEEEE--ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~--~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
||++.++.+.++.++ ..|.+++.||+....+ ..+.|+.|++..+..+..+..|...+..+++..| +.++ +|++
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD--~v~~--~G~d 379 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD--GVLV--SGGD 379 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccC--ceEE--EcCC
Confidence 999999988887766 4899999998755544 4479999999999998888888777777776655 3555 4999
Q ss_pred CceEEEEEcCCcceE------eecc---cccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 238 KGQVRVEHYASKRTK------FIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 238 dg~v~i~~~~~~~~~------~~~~---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+|.+..||++.+.-. ...+ -...|.+.||...|..|+||..|++ |++|.-.
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKt-Ik~~keD 439 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKT-IKMYKED 439 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcc-eEEEecc
Confidence 999999999875322 1112 2356999999999999999999999 9999754
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4e-18 Score=145.66 Aligned_cols=196 Identities=17% Similarity=0.262 Sum_probs=151.8
Q ss_pred CCCCCCeEEEEEcCCCC--EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 82 SSPPPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~--~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
..|.+.|+++.|.++-. .|.+|++|| |.+|+...-..+..... |.+.+..+.+.+.+.+-..++ .|+.+
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg-------~D~~l 151 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSGKLALSVG-------GDQVL 151 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCCceEEEEc-------CCcee
Confidence 35667999999999876 899999977 77999988766655554 677788888887776555555 47999
Q ss_pred EEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 159 MIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
++||+-+|+.-..++.......+.|.+ +++++...+.|-+|-+.+.+.+..+.- +....++-+... ..|++ |.
T Consensus 152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l~~-~~L~v-G~ 226 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFLDG-SELLV-GG 226 (362)
T ss_pred eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeecCC-ceEEE-ec
Confidence 999999988766666665555577765 578888889999999987776655442 333344444433 45553 89
Q ss_pred CCceEEEEEcCC-cceEeecccccceeEEEE--CCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 237 QKGQVRVEHYAS-KRTKFIMAHDSRIACFAL--TQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 237 ~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~f--spdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
.|+.|.+||.+. .++..+.+|...|-.|.+ .|++.||+|+|.||. |+|||++..
T Consensus 227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~-I~vWd~~~~ 283 (362)
T KOG0294|consen 227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF-IKVWDIDME 283 (362)
T ss_pred CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce-EEEEEcccc
Confidence 999999999885 456689999999999995 488999999999999 999999876
No 75
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.5e-19 Score=165.26 Aligned_cols=198 Identities=14% Similarity=0.283 Sum_probs=140.2
Q ss_pred EEEEc-CCCCEEEEEcCCe-EEEEEcCCCceE----EEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 90 HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 90 ~v~fs-~dg~~lasgs~~g-i~vw~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
.+..+ |.++||.+|+.|| |++|+....... +...+. |..-+.-+..+.+++.++.++ .|-+|++|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~ 101 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN 101 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence 33444 4677899999988 679988554321 111111 333334444556677777777 789999999
Q ss_pred CCCC--cEEEEeecC-CceEEEEE-eCCeEEEEE---CCeEEEEEcCCC--eEEEEEe---------ccCCCcceEEEEe
Q 022387 163 DHQS--RCIGELSFR-SEVRSVKL-RRDRIIVVL---EQKIFVYNFADL--KLLHQIE---------TIANPKGLCAVSQ 224 (298)
Q Consensus 163 ~~~~--~~~~~~~~~-~~v~~v~~-~~~~l~v~~---~~~I~iwd~~~~--~~i~~~~---------~~~~~~~~~~~s~ 224 (298)
...+ -++.++..| .-|.|++. -.+..++++ ++.|++||++.+ +.+.++. ++.. .+.+++.
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~--siYSLA~ 179 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD--SIYSLAM 179 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc--ceeeeec
Confidence 9887 455566544 45888887 444444433 579999999876 3333332 2222 2344555
Q ss_pred CCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
.+.+.+++ +|+..+.+++||-.+. ++..+++|+..|++|-.+.||+.+.|+|.||+ |||||+.-.+|+++|.
T Consensus 180 N~t~t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 180 NQTGTIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYI 252 (735)
T ss_pred CCcceEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEE
Confidence 55445666 7999999999998764 56688999999999999999999999999999 9999999999999873
No 76
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.9e-18 Score=147.94 Aligned_cols=198 Identities=18% Similarity=0.205 Sum_probs=137.9
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
...+|...|++++|+.||++||+.++|+ ||||+++.... ..+... ..+....+.+.++...+++....
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~------ 153 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKR------ 153 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEcc------
Confidence 3467888999999999999999998855 88999876432 112222 23355667777887776665532
Q ss_pred CCeEEEEeCCCCc---EEE------EeecC----CceEEEEE--eCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc
Q 022387 155 LNKVMIWDDHQSR---CIG------ELSFR----SEVRSVKL--RRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG 218 (298)
Q Consensus 155 d~~v~iWD~~~~~---~~~------~~~~~----~~v~~v~~--~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~ 218 (298)
-.++++|-..+.+ .-. .+.++ -.+..+-. +...++.+. +..|.+|++. ++.+.++.+......
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 3668888654321 111 11121 12333333 334555554 4699999998 888888887665566
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCC---------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~---------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
-++++|++ .++|+ +...-.|.+|..-. +++..+++|.++|...|||++...++|.|.||+ +||||+.
T Consensus 233 ~aavSP~G--RFia~-~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtd 308 (420)
T KOG2096|consen 233 DAAVSPDG--RFIAV-SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTD 308 (420)
T ss_pred ceeeCCCC--cEEEE-ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeecc
Confidence 67777765 88886 45556788887421 234589999999999999999999999999999 9999976
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.80 E-value=5.6e-18 Score=141.92 Aligned_cols=216 Identities=13% Similarity=0.145 Sum_probs=161.1
Q ss_pred CCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEE
Q 022387 67 PNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALV 145 (298)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
++.+......+.....+|.+.|.||..+-+.++|++|+.| .+++||+++++++..+++ ...+..+.+.+.+++.+++
T Consensus 34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~--~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT--NSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred ceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec--CCeeEEEeeccCCcEEEEE
Confidence 4444444444556668899999999999999999999984 589999999999999986 7888999999999987776
Q ss_pred eCCCCCCCCCCeEEEEeCCC-------CcEEEEeec-CCceEEEEEeC--CeEEEEE-CCeEEEEEcCCC-eEEEEEecc
Q 022387 146 GGGPDPQYPLNKVMIWDDHQ-------SRCIGELSF-RSEVRSVKLRR--DRIIVVL-EQKIFVYNFADL-KLLHQIETI 213 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~-------~~~~~~~~~-~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~ 213 (298)
....- . ..+.|.++|++. .+++..+.. .+.+..+.|.+ +.++.+. ++.|.+||++++ +.+...+.|
T Consensus 112 tD~~m-g-~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h 189 (327)
T KOG0643|consen 112 TDKQM-G-YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH 189 (327)
T ss_pred ehhhc-C-cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh
Confidence 63221 1 347799999883 344444444 35777777876 3444443 489999999986 455555667
Q ss_pred CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC---------------------------------------------
Q 022387 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------------------------------------------- 248 (298)
Q Consensus 214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--------------------------------------------- 248 (298)
...+.-+.++++ ..+++ +|+.|.+-++||+.+
T Consensus 190 ~~~Ind~q~s~d--~T~Fi-T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GK 266 (327)
T KOG0643|consen 190 SSKINDLQFSRD--RTYFI-TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGK 266 (327)
T ss_pred ccccccccccCC--cceEE-ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccc
Confidence 776666666655 46776 599999988887431
Q ss_pred -----------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 249 -----------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 249 -----------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+++-.+++|-++|++|||+|+|+..++|++||. |||--+..
T Consensus 267 FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~-VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY-VRLHHFDS 318 (327)
T ss_pred hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce-EEEEEecc
Confidence 011234789999999999999999999999999 99976553
No 78
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=161.43 Aligned_cols=199 Identities=15% Similarity=0.206 Sum_probs=152.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCC---CEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~ 157 (298)
...+..+++++.||||++||+|...| ++||+++..+.....+. |+..+.++++++.. .+||.++ .|+-
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASas-------rdRl 527 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASAS-------RDRL 527 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhcc-------CCce
Confidence 45566899999999999999999855 99999998877666665 78888888887642 3344444 6799
Q ss_pred EEEEeCCCC-cEEEEeec-CCceEEEEEe-------------------------------------------------C-
Q 022387 158 VMIWDDHQS-RCIGELSF-RSEVRSVKLR-------------------------------------------------R- 185 (298)
Q Consensus 158 v~iWD~~~~-~~~~~~~~-~~~v~~v~~~-------------------------------------------------~- 185 (298)
|+|+|+... ..++++.. .+.|+++.|- +
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 999998653 23333333 2344444331 1
Q ss_pred -CeEE-EEECCeEEEEEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccce
Q 022387 186 -DRII-VVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRI 261 (298)
Q Consensus 186 -~~l~-v~~~~~I~iwd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V 261 (298)
+.++ ++.|..|+|||+.+++..+.|++. .+....+.+.-||.+.++|+ .-.|+++.++|+-.++ +.+..+|...|
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at-Scsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT-SCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE-eecCCceEEEEeccchhhhhhcCcchhe
Confidence 1233 344679999999999999999984 34466788888999999997 5568899998887665 55899999999
Q ss_pred eEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 262 ACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 262 ~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+.|.|.+|-+.|++.|-||. |.||.+..
T Consensus 687 TG~kF~nDCkHlISvsgDgC-IFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGC-IFVWKLPL 714 (1080)
T ss_pred eeeeecccchhheeecCCce-EEEEECch
Confidence 99999999999999999999 99999864
No 79
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=3.8e-17 Score=154.40 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=120.8
Q ss_pred cCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-------EEEEeecC-CceEEEEEeCC---eEEEEE-
Q 022387 126 RGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQSR-------CIGELSFR-SEVRSVKLRRD---RIIVVL- 192 (298)
Q Consensus 126 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-------~~~~~~~~-~~v~~v~~~~~---~l~v~~- 192 (298)
|.+.+..+.+.+ +++.+++++ .|++|+|||+.++. .+..+..+ ..|.++.|++. .++++.
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS-------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTAS-------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEe-------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 567788888876 677777777 68999999997642 34455544 58999999974 344444
Q ss_pred CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccc-eeEEEECCCC
Q 022387 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDG 270 (298)
Q Consensus 193 ~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~-V~~l~fspdg 270 (298)
+++|+|||+.+++.+..+..|...+..++++++ +.+|+ +|+.||.|++||..... +.++.+|.+. +..+.|.+++
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd--G~lLa-tgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD--GSLLC-TTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC--CCEEE-EecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC
Confidence 689999999999999999888877777777664 47777 49999999999988655 4578889865 4577899988
Q ss_pred CEEEEEe----CCCCEEEEEECCCCc
Q 022387 271 QLLATSS----TKGTLVRIFNTLDGT 292 (298)
Q Consensus 271 ~~lAt~S----~Dgt~IrIWd~~tg~ 292 (298)
.+|++++ .|++ |+|||+++.+
T Consensus 224 ~~ivt~G~s~s~Dr~-VklWDlr~~~ 248 (493)
T PTZ00421 224 DLIITLGCSKSQQRQ-IMLWDTRKMA 248 (493)
T ss_pred CeEEEEecCCCCCCe-EEEEeCCCCC
Confidence 8887765 4788 9999998754
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.80 E-value=2.1e-17 Score=146.39 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=155.9
Q ss_pred CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
......+.|..+|+.+..+|.|+||.++++++ +.+.++.++..+....- ....+......|+++.++++.|. .
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDgLifgtgt-----~ 367 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDGLIFGTGT-----P 367 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCceEEeccC-----C
Confidence 34455688999999999999999999999977 56888888876554442 12445555555556666666554 6
Q ss_pred CCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 155 LNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
|+.|+|||+.++..+..|..+ ++|..+.|+.++ ++++.+ +.|++||++..+.++++...... .+.++++|..|.+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTY 446 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCe
Confidence 799999999999888888765 589999998764 444444 56999999999988888875543 6777888888899
Q ss_pred EEEecCCCceEEEEEcCCcc---eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 231 LVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~---~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
|++ ++.+=.|.++...++. +..+.-|.+..+++.|....+++|++|.|.. .||+.+
T Consensus 447 L~~-~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~-l~~~a~ 505 (506)
T KOG0289|consen 447 LGI-AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAI-LRLYAL 505 (506)
T ss_pred EEe-ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhh-eEEeec
Confidence 986 5555455555544442 4577889999999999999999999999998 988764
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=7e-18 Score=163.45 Aligned_cols=203 Identities=17% Similarity=0.160 Sum_probs=149.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCeE-EEEEcCC------C------------ceEEEEeeecCCceEEEEEecCCCE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHGF-RIYNCDP------F------------REIFRRDFERGGGIGVVEMLFRCNI 141 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~gi-~vw~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (298)
-..|.+.|.|+.|+|||++||+|++|.+ .||+... . +...+..- |..++.-++|+++..+
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSL 143 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccE
Confidence 3567789999999999999999999885 4998762 1 01112221 7788888888888888
Q ss_pred EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEE-------
Q 022387 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQI------- 210 (298)
Q Consensus 142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~------- 210 (298)
++.++ .|++|.|||.++.+.+..+..+ +.|..+.|.|- ++++-. |++|+||++.+..+.+++
T Consensus 144 lvS~s-------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 144 LVSVS-------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred EEEec-------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 88887 7899999999999888877755 58999999984 444433 479999997654443333
Q ss_pred ---------------------------------------------eccCCCcceEEEEeC----C-C--------CeE-E
Q 022387 211 ---------------------------------------------ETIANPKGLCAVSQG----V-G--------SLV-L 231 (298)
Q Consensus 211 ---------------------------------------------~~~~~~~~~~~~s~~----~-d--------~~~-l 231 (298)
-+|..+..++.|++. + + ..+ +
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 245555556666652 0 0 112 4
Q ss_pred EEecCCCceEEEEEcCCcc-eEe-ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 232 VCPGLQKGQVRVEHYASKR-TKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~-~~~-~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+++|+.|+.|.||.....+ +.. ..-....|..|+|+|||..|..+|.||+ |.++.++..+
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt-V~~i~Fee~E 358 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT-VALIHFEEKE 358 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe-EEEEEcchHH
Confidence 5569999999999986543 222 2223568999999999999999999999 9999988643
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=8.6e-19 Score=152.15 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=150.5
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
.+|+..|.|++=+|.. ..+|+|+.|| ++|||+....+...... |++-+..+++.+ ..+++++ +|++|+
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvg-------dDKtvK 132 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVG-------DDKTVK 132 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEec-------CCccee
Confidence 6899999999999987 7899999877 78999998877666665 677788777766 5667777 789999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCCe-EEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
.|-..- ..+.++-..+.+..+..+... .++.+...|.|||.....+++++.-....+.++.|++-. ..+|+ ++..|
T Consensus 133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILa-s~~sD 209 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILA-SCASD 209 (433)
T ss_pred eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chhee-eeccC
Confidence 998765 356666666777777776543 333345689999998888888887666666666666653 23454 46667
Q ss_pred ceEEEEEcCC-------------------------------------------cceEeecccccceeEEEECCCCCEEEE
Q 022387 239 GQVRVEHYAS-------------------------------------------KRTKFIMAHDSRIACFALTQDGQLLAT 275 (298)
Q Consensus 239 g~v~i~~~~~-------------------------------------------~~~~~~~~H~~~V~~l~fspdg~~lAt 275 (298)
+.|.++|... .++...++|.++|.+|+|||.|+-|+|
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 7777766432 123356789999999999999999999
Q ss_pred EeCCCCEEEEEECCCCc
Q 022387 276 SSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 276 ~S~Dgt~IrIWd~~tg~ 292 (298)
||.|.+ ||||.+..|+
T Consensus 290 gsyDks-IRIf~~~~~~ 305 (433)
T KOG0268|consen 290 GSYDKS-IRIFPVNHGH 305 (433)
T ss_pred ccccce-EEEeecCCCc
Confidence 999999 9999998775
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=7.7e-18 Score=150.05 Aligned_cols=195 Identities=17% Similarity=0.249 Sum_probs=148.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
.|...+.+++.|+||+|||+|+.+. +.||++++.+.+..... |.+.+..+++...++.++.++ .|++|++|
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s-------~Drsvkvw 271 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSAS-------ADRSVKVW 271 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeee-------cCCceEEE
Confidence 6777999999999999999999866 66999999877655443 577788888877788888877 78999999
Q ss_pred eCCCCcEEEEee-cCCceEEEEEeC-CeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 162 DDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 162 D~~~~~~~~~~~-~~~~v~~v~~~~-~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
+++....+.++- +...|.++.... .+.+.+. |.++++|++..... -.+.++...+.+++|-.+ ..++ +|+.
T Consensus 272 ~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~---~Hfv-sGSd 346 (479)
T KOG0299|consen 272 SIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND---EHFV-SGSD 346 (479)
T ss_pred ehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc---ccee-eccC
Confidence 998776665543 445788887654 4455444 57999999954332 245666666667776554 3444 5999
Q ss_pred CceEEEEEcCCcc-eEe-eccc-----------ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 238 KGQVRVEHYASKR-TKF-IMAH-----------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 238 dg~v~i~~~~~~~-~~~-~~~H-----------~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
||.|.+|++-.++ +.+ -.+| ..-|++|+..|...+||+||.+|. ||||.+.+|
T Consensus 347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g 412 (479)
T KOG0299|consen 347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDG 412 (479)
T ss_pred CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCC
Confidence 9999999987654 332 2233 126899999999999999999999 999999988
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.79 E-value=1.6e-17 Score=144.96 Aligned_cols=195 Identities=11% Similarity=0.147 Sum_probs=148.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC-----Cc--------------------eEEEEeeecCCceEEEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-----FR--------------------EIFRRDFERGGGIGVVEM 135 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~-----~~--------------------~~~~~~~~~~~~~~~~~~ 135 (298)
.+|+..|-+|+..+||..+++|+-|. +.||+... .+ .+..... |...+..+.|
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEE
Confidence 48999999999999999999999755 88998211 00 1111111 5566666666
Q ss_pred ecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe-EEEE--ECCeEEEEEcCCC---eEEEE
Q 022387 136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVV--LEQKIFVYNFADL---KLLHQ 209 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~--~~~~I~iwd~~~~---~~i~~ 209 (298)
+. ......++ -|.+|+.||+.+++++.++.......++..++.. ++++ ++..|++||-+++ -..++
T Consensus 269 ~d-~~v~yS~S-------wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 269 SD-ATVIYSVS-------WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cC-CCceEeec-------ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 55 33334444 6899999999999999999999999999998743 3332 2479999999653 23457
Q ss_pred EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
|.+|.+.+..+..++. +.++.++|+.||++++||.... ++..+.+|...|-++.|+. |.+++|||.|.+ |||+.
T Consensus 341 ~~gH~nwVssvkwsp~--~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~-l~i~~ 416 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPT--NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNK-LRIFK 416 (423)
T ss_pred eecchhhhhheecCCC--CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcce-EEEec
Confidence 7788887777766654 4566668999999999998753 5779999999999999975 679999999999 99987
Q ss_pred CC
Q 022387 288 TL 289 (298)
Q Consensus 288 ~~ 289 (298)
-.
T Consensus 417 ~~ 418 (423)
T KOG0313|consen 417 GS 418 (423)
T ss_pred cc
Confidence 54
No 85
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=1.1e-16 Score=152.56 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=125.6
Q ss_pred EEEEEcCCCceEEEEeeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEEeCCCCc--------EEEEee-cCCc
Q 022387 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRSE 177 (298)
Q Consensus 108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iWD~~~~~--------~~~~~~-~~~~ 177 (298)
+++|+......+..... |.+.+..+.+.+. ++.+++++ .|++|+|||+.++. .+..+. +...
T Consensus 56 I~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS-------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 56 IRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGS-------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred EEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEe-------CCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 67998876554444333 6778888888775 56777766 68999999997642 122333 3457
Q ss_pred eEEEEEeCCe--E-EEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-E
Q 022387 178 VRSVKLRRDR--I-IVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-K 252 (298)
Q Consensus 178 v~~v~~~~~~--l-~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~ 252 (298)
|.++.|++.. + +++ .+++|+|||+++++.+..+.. ... +.++++++++.+|++ ++.|+.|+|||...... .
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~--V~SlswspdG~lLat-~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PKK--LSSLKWNIKGNLLSG-TCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-CCc--EEEEEECCCCCEEEE-EecCCEEEEEECCCCcEEE
Confidence 9999999853 3 333 368999999999888777753 333 445555566688885 78899999999987654 4
Q ss_pred eecccccceeE-----EEECCCCCEEEEEeCCC----CEEEEEECCC-CcEEE
Q 022387 253 FIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQ 295 (298)
Q Consensus 253 ~~~~H~~~V~~-----l~fspdg~~lAt~S~Dg----t~IrIWd~~t-g~~l~ 295 (298)
++.+|.+.+.+ ..|++++.+|+|+|.|+ + |+|||+++ ++.++
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALV 255 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceE
Confidence 78899876433 34678999999988875 6 99999995 55444
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-17 Score=153.25 Aligned_cols=195 Identities=15% Similarity=0.125 Sum_probs=160.5
Q ss_pred EEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~ 168 (298)
.-+.|+ ....||+|....+.+|+..+.......++ ++..+..+.+..++..+++.. .+|.|.|||..+.+.
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~~LavG~-------~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGSHLAVGT-------SDGTVQIWDVKEQKK 251 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec-CCCceEEEEECCCCCEEEEee-------cCCeEEEEehhhccc
Confidence 446788 45689999999999999988875544454 367899999999999999988 679999999999888
Q ss_pred EEEeec--CCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEE-EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387 169 IGELSF--RSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (298)
Q Consensus 169 ~~~~~~--~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~-~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~ 244 (298)
+.++.. ...|-+++|+...+..+. ++.|..+|++..+.+.. +..|. ..+|.+.+.+|+.++| +|+.|+.+.||
T Consensus 252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~--qeVCgLkws~d~~~lA-SGgnDN~~~Iw 328 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR--QEVCGLKWSPDGNQLA-SGGNDNVVFIW 328 (484)
T ss_pred cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc--ceeeeeEECCCCCeec-cCCCccceEec
Confidence 888876 458999999977666665 58999999987665544 55454 4578888888889999 69999999999
Q ss_pred EcCC-cceEeecccccceeEEEECCC-CCEEEEE--eCCCCEEEEEECCCCcEEEe
Q 022387 245 HYAS-KRTKFIMAHDSRIACFALTQD-GQLLATS--STKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 245 ~~~~-~~~~~~~~H~~~V~~l~fspd-g~~lAt~--S~Dgt~IrIWd~~tg~~l~~ 296 (298)
|... .+...+..|.++|.+++|+|- ..+||+| +.|++ ||+||..+|++++.
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDS 383 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecc
Confidence 9854 456689999999999999985 6899998 56998 99999999998865
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=148.77 Aligned_cols=207 Identities=13% Similarity=0.149 Sum_probs=163.3
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceE-EEEee----------------ecCCceEEEEEecCCC
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI-FRRDF----------------ERGGGIGVVEMLFRCN 140 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~ 140 (298)
.....|.-+|.+|+++||+++..+++.++ |.=|++.+++.. +.++- .|...+..++++.++.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 33456777999999999999999999866 668988665422 11110 1456677788889999
Q ss_pred EEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeC--Ce-EEEEECCeEEEEEcCCCeEEEEEeccCCC
Q 022387 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DR-IIVVLEQKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 141 ~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~-l~v~~~~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
++++++ .|+.|.|||.++.+.+..+..+ ..|.+++|-. .. +..+.+.+|++|++.....+.++.+|...
T Consensus 216 ylatgg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 216 YLATGG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred EEEecC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 888877 6799999999999998887765 5899999953 34 44456789999999999998898888766
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+..+....- ...++.|..|.++++|.+.......+.+|.+.+-|++|-.+ ..|+|||+||. |-+|++.+.+.+++
T Consensus 289 v~~IdaL~r---eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 289 VLGIDALSR---ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFT 363 (479)
T ss_pred eeeechhcc---cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeE
Confidence 555544332 34444599999999999977777789999999999999876 57999999999 99999999998876
Q ss_pred c
Q 022387 297 G 297 (298)
Q Consensus 297 ~ 297 (298)
+
T Consensus 364 ~ 364 (479)
T KOG0299|consen 364 S 364 (479)
T ss_pred e
Confidence 5
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=1.6e-17 Score=141.78 Aligned_cols=195 Identities=13% Similarity=0.228 Sum_probs=149.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
..+|++++|+|.|++|++|.+ ..+++||+.+.++.....-. |.+.+..+..+..+++.++++ .||.||||
T Consensus 216 ~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-------kDG~Iklw 288 (430)
T KOG0640|consen 216 TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-------KDGAIKLW 288 (430)
T ss_pred cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-------cCCcEEee
Confidence 348999999999999999999 66889999998875544321 677788888888888888877 78999999
Q ss_pred eCCCCcEEEEeec---CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccC---CCcc-e-EEEEeCCCCeE
Q 022387 162 DDHQSRCIGELSF---RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA---NPKG-L-CAVSQGVGSLV 230 (298)
Q Consensus 162 D~~~~~~~~~~~~---~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~---~~~~-~-~~~s~~~d~~~ 230 (298)
|-.+++|+.++.- ...|.+..|..+...+.. +..+++|.+.+++.+.++.+.. .... . ..|+... .+
T Consensus 289 DGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE--dy 366 (430)
T KOG0640|consen 289 DGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE--DY 366 (430)
T ss_pred ccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc--ce
Confidence 9999999888753 347888889776544443 4699999999999999987632 1111 1 1333333 44
Q ss_pred EEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+.+.-...+.++-||..+..-. .-.+|+++|+++.-||.+.-|.|||+|.. +|.|--+
T Consensus 367 Vl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r-aRFWyrr 426 (430)
T KOG0640|consen 367 VLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR-ARFWYRR 426 (430)
T ss_pred EEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce-eeeeeec
Confidence 4444566677888998765433 34589999999999999999999999999 9999643
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.9e-17 Score=135.45 Aligned_cols=197 Identities=15% Similarity=0.129 Sum_probs=142.6
Q ss_pred CeEEEEEcC--CCCE-EEEEcC------CeEEEEEcC-CCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 87 TLLHISFNQ--DHGC-FAAGTD------HGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 87 ~V~~v~fs~--dg~~-lasgs~------~gi~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
.=.++.||| ++++ +|++.. +.+.|-+.. ..+......+..+..+.-++|+.....++++.. .||
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~------GDG 83 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS------GDG 83 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe------cCc
Confidence 346788998 3432 334332 224466663 444444444434667788888876655544443 369
Q ss_pred eEEEEeCCC-CcEEEEeecC-CceEEEEEeC---CeEE-EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 157 KVMIWDDHQ-SRCIGELSFR-SEVRSVKLRR---DRII-VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 157 ~v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~---~~l~-v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.++|||... ...++.++.+ .+|.++.++. +.++ ..-|++|++|+....+.++++.+|...+....+++.-. .+
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nl 162 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-NL 162 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC-Ce
Confidence 999999654 3455555544 5899999875 2222 23479999999999999999999998888888888653 45
Q ss_pred EEEecCCCceEEEEEcCC-cceEeecccccceeEEEEC-CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 231 LVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fs-pdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
++ +.|.||.+++||++. ++...+.+|...|.|+.|+ -+...||||+.|+. ||+||+++-+
T Consensus 163 fa-s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r 224 (311)
T KOG0277|consen 163 FA-SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLR 224 (311)
T ss_pred EE-EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhcc
Confidence 55 589999999999875 3344699999999999999 57899999999999 9999999754
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=7.1e-17 Score=143.68 Aligned_cols=199 Identities=13% Similarity=0.110 Sum_probs=143.8
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCce----------EEEEeeecCCceEEEEEecCCCEEEEEeCCC
Q 022387 82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE----------IFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
..|++.|+.+..-|+. .++|+++..+ +.|||.....- ..++.. |.+.-..+.|........+++ +
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~-~- 197 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSG-S- 197 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeec-c-
Confidence 5677889999988865 5677777755 77998754321 112222 444333455554443333333 2
Q ss_pred CCCCCCCeEEEEeCCCCcE-------EEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcC--CCeEEEEEeccCC
Q 022387 150 DPQYPLNKVMIWDDHQSRC-------IGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFA--DLKLLHQIETIAN 215 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~-------~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~--~~~~i~~~~~~~~ 215 (298)
.|++|.+||+..... ...+..+ ..|-.++|++ +.+..++ ++.+.|||++ +.++.+..++|..
T Consensus 198 ----~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 198 ----DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred ----CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 679999999875322 2233334 3677788865 4555555 4899999999 6777778888999
Q ss_pred CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 216 ~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t 290 (298)
.+.+++|++.. ..+|| +|+.||+|++||+.+ .++.++.+|...|.+|.|||. ...|||++.|+. +.|||+..
T Consensus 274 ~vn~~~fnp~~-~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ 348 (422)
T KOG0264|consen 274 EVNCVAFNPFN-EFILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSR 348 (422)
T ss_pred ceeEEEeCCCC-CceEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEeccc
Confidence 99999998875 35666 699999999999875 356799999999999999997 589999999999 99999875
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.9e-16 Score=142.14 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=147.2
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDH-GCFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg-~~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..|..+|..+.|+|++ +.|++|++|++ ++|++.+........- |..-+.+..+.+-.+.+++ +|| -|++||
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivv-tGs-----YDg~vr 179 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVV-TGS-----YDGKVR 179 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEE-ecC-----CCceEE
Confidence 6788899999999855 57888888775 5999988764323322 5666777777665554443 333 689999
Q ss_pred EEeCCCC-cEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 160 IWDDHQS-RCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 160 iWD~~~~-~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
+||.+.. ..+.++++..+|-.+.+-+. .++.++.+.|++||+. .++.+..+..|...+.++.+..++ ..|. ||
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~--~rLl-S~ 256 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS--TRLL-SG 256 (487)
T ss_pred EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCC--ceEe-ec
Confidence 9999986 78889999999999887654 5666667899999997 455555555577777777777654 5555 59
Q ss_pred CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
+-||.|++++.++-++..-....++|-+|+.+|+++.++.|-.||. +-+=
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl-v~~r 306 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL-VSIR 306 (487)
T ss_pred ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccce-eeee
Confidence 9999999999766555533446789999999999999999999997 6554
No 92
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=7.4e-17 Score=151.13 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=160.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCC-------Cce------EEEEeeecCCceEEEEEecCCCEEEEE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDP-------FRE------IFRRDFERGGGIGVVEMLFRCNILALV 145 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
+...|.+.|..++.+||++.+++|+. +++++|+... .+. ..+.++ ...+.++.+++++.+++++
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCCcEEEEE
Confidence 33688999999999999999999987 5688997631 111 123343 5678889999999999887
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCA 221 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~ 221 (298)
= -|++|+||-+.+-+-...+-.| -+|.|+..+++. ++.+. |..|+||-+.=+.+-+.+-+|...+..+.
T Consensus 527 L-------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 527 L-------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred e-------ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 6 6899999999987766665555 499999988764 33333 57999999988888889999988887888
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEcC-CcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 222 VSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
|.|.. .++. +++.||.|+.||-. .+.+..+.+|...|+|++.+|+|.+++|+|.|.+ ||+|......++
T Consensus 600 F~P~~--~~FF-t~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s-IRlwE~tde~~~ 669 (888)
T KOG0306|consen 600 FLPKT--HLFF-TCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS-IRLWERTDEILI 669 (888)
T ss_pred Ecccc--eeEE-EecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce-eEeeeccCccee
Confidence 87742 3333 58999999999865 4567799999999999999999999999999999 999997665444
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=2.1e-15 Score=133.04 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=139.0
Q ss_pred CeEEEEEcCCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
.+..++|+|+|++++++ .. +.+++||+.+.+.+..... ......+.+.+++..++++..+ ...+.+||..
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~ 145 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTK 145 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecC------CCeEEEEeCC
Confidence 35678999999977654 44 4588999988765544432 3345667778888887776522 2457888998
Q ss_pred CCcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccC-----CCcceEEEEeCCCCeEEEEec
Q 022387 165 QSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIA-----NPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~-----~~~~~~~~s~~~d~~~la~sG 235 (298)
+++.+..+........+.|+++ .+++.. ++.|++||+.+++.+.++..+. .......+..++++.++.++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 8877665554455666777754 344443 5899999999988877765321 111222344445556544345
Q ss_pred CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEec
Q 022387 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..++.+.+||..+.++.....+...+.+++|+|+|++|+++ +.+++ |+|||+++++++.++
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSND-VSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEE
Confidence 56678999998776554333455689999999999999886 46888 999999999998765
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.2e-17 Score=156.72 Aligned_cols=197 Identities=14% Similarity=0.219 Sum_probs=146.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEE--EEeee--cCCceEE--EEE-ecCCCEEEEEeCCCCCCCCCCeE
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIF--RRDFE--RGGGIGV--VEM-LFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~--~~~~~--~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
....+|+.++|-..|++++...++||.+.+..... ...+. .+....+ +.| .+..+++|+++ ..|.|
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s-------~nG~i 112 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCS-------TNGVI 112 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeec-------CCCcE
Confidence 46778889999999999988888898775533111 11110 1122222 233 34567888887 56889
Q ss_pred EEEeCCC---CcEEEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 159 MIWDDHQ---SRCIGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 159 ~iWD~~~---~~~~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.+||+.. ...+..+..+ ..+.+++||. ..++.+. |+.|++||++..+...++......+.-+.|++.++. .
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-~ 191 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-K 191 (839)
T ss_pred EEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-e
Confidence 9999987 3344444444 4799999985 4455544 589999999988888888876666777889988754 4
Q ss_pred EEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 231 LVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
++ ++.+.|.++.||+..-. ...+.+|.++|.|+.|+|++.+|||||.|+. |||||+.+++
T Consensus 192 F~-s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~ 253 (839)
T KOG0269|consen 192 FA-SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSR 253 (839)
T ss_pred EE-EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCC
Confidence 44 48999999999998643 4578999999999999999999999999999 9999998654
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2e-18 Score=160.90 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=162.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCeEE-EEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~gi~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
.|...|.++..-..++.+++|+++-.. +|.+.....+..... |+..|.++.+.+...+++.++ .+|+||+|
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~Llaags-------asgtiK~w 97 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSERLLAAGS-------ASGTIKVW 97 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchhhhcccc-------cCCceeee
Confidence 345577777776778899999987755 998866555444444 688888888887776666655 67999999
Q ss_pred eCCCCcEEEEeecC-CceEEEEEeCCeEEEE---ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCC
Q 022387 162 DDHQSRCIGELSFR-SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 162 D~~~~~~~~~~~~~-~~v~~v~~~~~~l~v~---~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~ 237 (298)
|++..+.++++..+ ..+.+|.||+..-+.+ .+.-+++||++...+.+++.+|...+.++.|++++ .+++ +|..
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G--r~v~-~g~e 174 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG--RWVA-SGGE 174 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC--ceee-ccCC
Confidence 99999988887765 4789999999755553 35789999999999999999987777777777654 8888 5888
Q ss_pred CceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 238 KGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 238 dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
|..++|||...+++ ..|+.|...|..+.|+|..-+|++||.|++ |++||+++-+.|
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I 231 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVI 231 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEe
Confidence 99999999987665 489999999999999999999999999999 999999976554
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=2.7e-16 Score=141.67 Aligned_cols=204 Identities=12% Similarity=0.154 Sum_probs=151.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCce---EEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE---IFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
..|..-|.++++|...+++.+|+.++|+|||+...+. +..+... .+.=++.+.+..+++.|++.+ ...+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG-------east 488 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG-------EAST 488 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc-------ccce
Confidence 5677789999999999999999999999999854321 1111110 133456667778888887765 3478
Q ss_pred EEEEeCCCCcEEEEeecC---CceEEEEEeCCe---EEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 158 VMIWDDHQSRCIGELSFR---SEVRSVKLRRDR---IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~---~~v~~v~~~~~~---l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
+.|||+.........+.. ....+++.+++- +..+.+|.|.|||+++...++.|++|..-..++.++.++ ..|
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG--tkl 566 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG--TKL 566 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC--cee
Confidence 999999875543333332 245667777753 333457999999999999999999998888888888776 444
Q ss_pred EEecCCCceEEEEEcCC-----------------------------------------cceEeecccccceeEEEECCCC
Q 022387 232 VCPGLQKGQVRVEHYAS-----------------------------------------KRTKFIMAHDSRIACFALTQDG 270 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~-----------------------------------------~~~~~~~~H~~~V~~l~fspdg 270 (298)
= +|.-|.+|+-||+.. ..-..+..|.+.|-++.|++-|
T Consensus 567 W-TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 567 W-TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred e-cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence 4 488888888888431 1112456788999999999999
Q ss_pred CEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 271 QLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
++|++.+.|.- +..|.+.-|..|++
T Consensus 646 kwfvStGkDnl-LnawrtPyGasiFq 670 (705)
T KOG0639|consen 646 KWFVSTGKDNL-LNAWRTPYGASIFQ 670 (705)
T ss_pred ceeeecCchhh-hhhccCccccceee
Confidence 99999999998 99999988876654
No 97
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.75 E-value=1.8e-16 Score=138.48 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=143.3
Q ss_pred cCCCCCCeEEEEEc-CCC--CEEEEEcC-CeEEEEEcCCCceEEEEee---ecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387 81 SSSPPPTLLHISFN-QDH--GCFAAGTD-HGFRIYNCDPFREIFRRDF---ERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 81 ~~~~~~~V~~v~fs-~dg--~~lasgs~-~gi~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
..+|.++|.+++|- ++. ..|++++. .++++|.++.......... .|+..+..+....++..++.++
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS------- 212 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS------- 212 (423)
T ss_pred EecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-------
Confidence 36778899988875 333 25777776 5688998766542211110 1677788888777777776666
Q ss_pred CCCeEEEEeCCC-------------------------CcEEEEeecC-CceEEEEEeCCeEEE-E-ECCeEEEEEcCCCe
Q 022387 154 PLNKVMIWDDHQ-------------------------SRCIGELSFR-SEVRSVKLRRDRIIV-V-LEQKIFVYNFADLK 205 (298)
Q Consensus 154 ~d~~v~iWD~~~-------------------------~~~~~~~~~~-~~v~~v~~~~~~l~v-~-~~~~I~iwd~~~~~ 205 (298)
-|.+|+||+..+ +..+..+..| .+|.++.|.+...+. + -|.+|+.||+.+++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc
Confidence 689999999321 1122334433 588999997643333 3 36899999999999
Q ss_pred EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeecccccceeEEEECCC-CCEEEEEeCCC
Q 022387 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD-GQLLATSSTKG 280 (298)
Q Consensus 206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dg 280 (298)
.+.++.+. .... +++..+...+|| +|+.|..+++||-..+. ..+|.+|+.-|.+|.|+|. -.+|++||.|+
T Consensus 293 ~~~~~~~~-ksl~--~i~~~~~~~Ll~-~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 293 LKSTLTTN-KSLN--CISYSPLSKLLA-SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred ceeeeecC-ccee--Eeecccccceee-ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 88887753 3334 444455667888 49999999999976542 3378999999999999986 58999999999
Q ss_pred CEEEEEECCCCc
Q 022387 281 TLVRIFNTLDGT 292 (298)
Q Consensus 281 t~IrIWd~~tg~ 292 (298)
+ +|+||+++-+
T Consensus 369 t-~klWDvRS~k 379 (423)
T KOG0313|consen 369 T-VKLWDVRSTK 379 (423)
T ss_pred e-EEEEEeccCC
Confidence 9 9999999876
No 98
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.9e-16 Score=135.58 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
-.|+.||+.|.+||+|..+| +.|||+.+.+.-..... |...+.+++|+.+++.|.+++ .|..|++||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeec-------CCceeEEEeccCC
Confidence 67999999999999999977 77999999875333332 678999999999999999988 7899999999999
Q ss_pred cEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCC-cceE---EEEeCCCCeEEEEecCCC
Q 022387 167 RCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANP-KGLC---AVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 167 ~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~-~~~~---~~s~~~d~~~la~sGs~d 238 (298)
.++.++.|.++|..+.||+. ..++++ +..-.+.++.+ .++++-..... .... ...++..+.++. +|...
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsK 174 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSK 174 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEE-EecCc
Confidence 99999999999999999873 333332 44444444443 22332211111 0111 113455668887 49999
Q ss_pred ceEEEEEcCCcc-eEeecccc-cceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 239 GQVRVEHYASKR-TKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 239 g~v~i~~~~~~~-~~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
|.+.+++..+-. +..++.-. ..|..|-|+..|+.|+.-..|+. ||.++++
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~ 226 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEIS 226 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehh
Confidence 999999987654 44566555 78999999999999999999999 9999977
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=7.8e-18 Score=158.06 Aligned_cols=193 Identities=12% Similarity=0.139 Sum_probs=140.7
Q ss_pred CeEEEEEcC-CCCEEEEEcCCe-EEEEEcCC---CceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeEEE
Q 022387 87 TLLHISFNQ-DHGCFAAGTDHG-FRIYNCDP---FREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 87 ~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+..|.|++ +.++||+.+..| |.+||+.. .+.+....- |+..+..+++.. .+++++.++ +|++||+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGS-------QDg~vK~ 160 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGS-------QDGTVKC 160 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecC-------CCceEEE
Confidence 455678886 567999999877 56999976 222222221 566777777753 455555544 7899999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeC---CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRR---DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~---~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
||++....+.++... ..|..|.|++ +.++.+.+ |.+++||++. .++...+.+|..++.++.++| +..+|| +
T Consensus 161 ~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lA-T 237 (839)
T KOG0269|consen 161 WDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLA-T 237 (839)
T ss_pred EeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceee-e
Confidence 999988777666554 4789999975 34555544 8999999975 455667788988888777766 558999 5
Q ss_pred cCCCceEEEEEcCCcceE-eeccc-ccceeEEEECCCC-CEEEEEeC--CCCEEEEEECCCC
Q 022387 235 GLQKGQVRVEHYASKRTK-FIMAH-DSRIACFALTQDG-QLLATSST--KGTLVRIFNTLDG 291 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~-~~~~H-~~~V~~l~fspdg-~~lAt~S~--Dgt~IrIWd~~tg 291 (298)
|+.|++|+||+++..... ...-| ..+|.+|+|-|+- .+|||+|. |-. |+|||++.-
T Consensus 238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts-V~VWDvrRP 298 (839)
T KOG0269|consen 238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS-VHVWDVRRP 298 (839)
T ss_pred cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce-EEEEeeccc
Confidence 999999999999865433 22233 3679999999984 78898865 445 999998853
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.74 E-value=6.4e-17 Score=142.55 Aligned_cols=205 Identities=13% Similarity=0.128 Sum_probs=146.6
Q ss_pred CCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387 69 YQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
.|+........+..+|...|+++.|......+++|+. .++++||+....+..+.-. ...+.-+.+. ...+.+|
T Consensus 245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~----~~~~~Sg 318 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS----ISDVISG 318 (459)
T ss_pred eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec----ceeeeec
Confidence 3444444344445679999999999998877889987 6688999988654322221 1222222221 1222232
Q ss_pred CCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE-CCeEEEEEcCCCeEEEEEeccCCCc--ceEEE
Q 022387 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADLKLLHQIETIANPK--GLCAV 222 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~--~~~~~ 222 (298)
..|++||+||.+...+...+...+.|.++..+.++ ++++. ++++.+.|+++.+..+.+....... ....+
T Consensus 319 -----H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 319 -----HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred -----ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 26899999999999999999999999999887654 44443 5899999999999988887533211 12233
Q ss_pred EeCCCCeEEEEecCCCceEEEEEcCCcceE-eeccccc--ceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDS--RIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~--~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
.++|++.|+|+ |+.||.|.||+..+.++. .+..... .|++++|+|.|++|++++.++. +.+|
T Consensus 394 vfSpd~~YvaA-GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~-v~lW 458 (459)
T KOG0288|consen 394 VFSPDGSYVAA-GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA-VTLW 458 (459)
T ss_pred EECCCCceeee-ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcc-eEec
Confidence 34455689984 999999999999876643 4544333 6999999999999999999999 9999
No 101
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.73 E-value=1.5e-15 Score=132.24 Aligned_cols=204 Identities=12% Similarity=0.151 Sum_probs=164.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
....|...|.+|+.+|+.+++|+|+. |...||++.++.......- |+..+.++.+++++.++|++. .+|.|
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGd-------msG~v 130 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGD-------MSGKV 130 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecC-------CCccE
Confidence 34678889999999999999999998 4456999999887666654 678888888888888888766 67999
Q ss_pred EEEeCCCCcEEEEeecC-CceEEEEEeCCe-EEEE--ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 159 MIWDDHQSRCIGELSFR-SEVRSVKLRRDR-IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~-~~v~~v~~~~~~-l~v~--~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
+||+..++.....+... ..+-=+.||+.. ++++ .++.+.+|.+.+....+.+.+|..+..+-.|.+++ ..+++
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG--Kr~~t- 207 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG--KRILT- 207 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC--ceEEE-
Confidence 99999999887776532 345556788752 2333 35899999999888889999998888777887764 77774
Q ss_pred cCCCceEEEEEcCCcce-Eeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 235 GLQKGQVRVEHYASKRT-KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~-~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
|..||+|++|+.++... ..+.+ -...-.++.++.++..+.+|+.++. +++-+..+||++.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~-~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV-ACGVNNGSGKVVN 269 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc-EEEEccccceEEE
Confidence 99999999999988753 34442 2346899999999999999999999 9999999999874
No 102
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=8.7e-16 Score=134.19 Aligned_cols=196 Identities=10% Similarity=0.140 Sum_probs=130.2
Q ss_pred CCCCCeEEEEEcCC--CCEEEEEcCCe-EEEEEcCCC----------------ceEEEEeeecCCceEEEEEecCCCEEE
Q 022387 83 SPPPTLLHISFNQD--HGCFAAGTDHG-FRIYNCDPF----------------REIFRRDFERGGGIGVVEMLFRCNILA 143 (298)
Q Consensus 83 ~~~~~V~~v~fs~d--g~~lasgs~~g-i~vw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (298)
.|...|+-+.-++- ..+.|+=++.| +.||++... +.++.... |.+.-..++|++-... .
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeeccccccc-c
Confidence 33444555555543 34666667766 789987421 23333332 4555556666552221 1
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCCcEEEE----eecCCceEEEEEeCC---eEEEE-ECCeEEEEEcCCC---eEEEEEec
Q 022387 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRD---RIIVV-LEQKIFVYNFADL---KLLHQIET 212 (298)
Q Consensus 144 ~~~~~~~~~~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~---~l~v~-~~~~I~iwd~~~~---~~i~~~~~ 212 (298)
+.+|. .-+.|++|...++..... ..+...|-.++|++. .++.| ++++|+|||++.+ .++.+ +.
T Consensus 227 LlsGD-----c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA 300 (440)
T KOG0302|consen 227 LLSGD-----CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA 300 (440)
T ss_pred cccCc-----cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec
Confidence 22221 447899999988765332 223447888889763 34444 3799999999876 33333 66
Q ss_pred cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC----cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEE
Q 022387 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 213 ~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~----~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd 287 (298)
|...+.+++++... .+|| +|+.||++.|||+.+ .++.+|+.|+.+|++|.|+|. ...||.+|.|.. |.|||
T Consensus 301 h~sDVNVISWnr~~--~lLa-sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWD 376 (440)
T KOG0302|consen 301 HNSDVNVISWNRRE--PLLA-SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWD 376 (440)
T ss_pred cCCceeeEEccCCc--ceee-ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEE
Confidence 77766666665544 6777 699999999999874 345699999999999999985 577888888998 99999
Q ss_pred CCC
Q 022387 288 TLD 290 (298)
Q Consensus 288 ~~t 290 (298)
+.-
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 874
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.4e-15 Score=144.20 Aligned_cols=198 Identities=14% Similarity=0.132 Sum_probs=149.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..+|.+.|..++||.++-+|-++.|+++|+|++....++.... |..=|+++++.+..+...+.| + -|++|||
T Consensus 365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSG-S-----LD~KvRi 436 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISG-S-----LDGKVRL 436 (712)
T ss_pred hhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeec-c-----cccceEE
Confidence 3688899999999998877777778999999999888876655 688889999887655444433 2 6899999
Q ss_pred EeCCCCcEEEEeecCCceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEeccCC--------CcceEEEEeCCCCe
Q 022387 161 WDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIETIAN--------PKGLCAVSQGVGSL 229 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~~~~~--------~~~~~~~s~~~d~~ 229 (298)
|++...+.+.-.....-|+++++.|++- ++++ .|.+++|+..+.++...++.+.. .+..+.+.+.....
T Consensus 437 WsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred eecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 9999988887777778899999988643 3333 69999999998888776654221 22333333322225
Q ss_pred EEEEecCCCceEEEEEcCCcc-eEeecccccc--eeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+|+ .+.|..|+|+|..... +..|+++... =..-.|+.||++|+++|+|.. |.||++.
T Consensus 517 vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~-VYiW~~~ 576 (712)
T KOG0283|consen 517 VLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW-VYIWKND 576 (712)
T ss_pred EEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce-EEEEeCC
Confidence 776 4999999999986554 4467765432 344579999999999999998 9999974
No 104
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=136.65 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=159.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.++..+|.|+.||.|...||+|+.|| |+||.++++.++.+.+-+|..++.++.++.++..+..++ .|.++||
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s-------fD~tvRi 332 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS-------FDQTVRI 332 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc-------ccceEEE
Confidence 46678999999999999999999877 899999999887665544677788887777666555555 6899999
Q ss_pred EeCCCCcEEEEeecCC-ceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFRS-EVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~-~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~s 234 (298)
--+.+|+++.++..++ -|....|.++ .++.+ ++++|++|+..+.+++.+|+.... ++..+.+-|.....+++
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-- 410 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV-- 410 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--
Confidence 9999999999998775 5677778764 44444 469999999999999999987443 33444433332234555
Q ss_pred cCCCceEEEEEcCCcceEeecc---cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 235 GLQKGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~~~~~---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+....+|.|-++...-+..+.. -.+..-+.+.||.|.++-+.++|+. +.-|.+.+|++-+++
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v-lYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV-LYCFSVLSGKLERTL 475 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE-EEEEEeecCceeeee
Confidence 5788899998887776666643 3356677789999999999999999 999999999986653
No 105
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.71 E-value=5e-17 Score=145.67 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=126.4
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC-CcEEEEeecCC-ceEEEEEeCC---eEEEEECCeEEEEE
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFRS-EVRSVKLRRD---RIIVVLEQKIFVYN 200 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~-~~~~~~~~~~~-~v~~v~~~~~---~l~v~~~~~I~iwd 200 (298)
|..++..+.+.+....|+++++ .|+.|+||++.. +.+++++.++. +|..+.|+.. ++.+.-|..|++||
T Consensus 213 H~kgvsai~~fp~~~hLlLS~g------mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGG------MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred CccccchhhhccceeeEEEecC------CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 5666777777663333433332 789999999987 88999988764 8999999864 34444589999999
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTK 279 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~D 279 (298)
+++++++.++... ....++.+.++..+.+|+ |..||.|+-||+....+. .+..|-+.|..|.|-++|++|+|+|+|
T Consensus 287 tETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 287 TETGQVLSRFHLD-KVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred cccceEEEEEecC-CCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999998864 445677777776444444 999999999999887754 788899999999999999999999999
Q ss_pred CCEEEEEECCCCcEE
Q 022387 280 GTLVRIFNTLDGTLL 294 (298)
Q Consensus 280 gt~IrIWd~~tg~~l 294 (298)
++ +|||+.+.+-.+
T Consensus 364 ks-~riWe~~~~v~i 377 (503)
T KOG0282|consen 364 KS-VRIWENRIPVPI 377 (503)
T ss_pred cc-EEEEEcCCCccc
Confidence 99 999999887554
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.70 E-value=2.3e-15 Score=128.20 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=145.3
Q ss_pred CcccCCCCCCeEEEEEcC-CCCEEEEEcC-CeEEEEEcCCCceEEEEe-eecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 78 ESTSSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRD-FERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 78 ~~~~~~~~~~V~~v~fs~-dg~~lasgs~-~gi~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
+.+.......|.+++||| ...+|+.|+- ++||+|+++..+...-+. ..|.+.+..++|+-++..+++++ .
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~ 92 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------C 92 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------c
Confidence 344455667899999999 4456656765 559999998743222111 11688999999999997777766 7
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeE--EEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l--~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
|+.+++||+.++|...--.|..+|.++.|-+... .+++ |++|++||.+..+++.+++-.+. +.+... ...
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~Dv--~~p 167 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAADV--LYP 167 (347)
T ss_pred CCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeehhc--cCc
Confidence 8999999999998877667778999998855433 2222 58999999999999988875422 222222 224
Q ss_pred EEEEecCCCceEEEEEcCCcceEeeccccc----ceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDS----RIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~~~~~~~~~~H~~----~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
++++ +..+..|.++++.+.+ .+++.+.+ -++||+.-+|...+|-||-.|. +-|..+..+
T Consensus 168 m~vV-ata~r~i~vynL~n~~-te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~ 230 (347)
T KOG0647|consen 168 MAVV-ATAERHIAVYNLENPP-TEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP 230 (347)
T ss_pred eeEE-EecCCcEEEEEcCCCc-chhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC
Confidence 5554 6788899999987653 23444433 4899999999999999999999 999999887
No 107
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=8.7e-16 Score=136.54 Aligned_cols=203 Identities=18% Similarity=0.263 Sum_probs=156.4
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDH-GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg-~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..|...|..++|+..- ..||+|+. +++++||+++++...+... |++.+..+.|.+....+.+.| + .|++|+
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsG-s-----~D~~V~ 312 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSG-S-----YDGTVA 312 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEec-c-----ccceEE
Confidence 4577889999999865 57999997 6699999999988776664 688999999976544443433 2 689999
Q ss_pred EEeCCC-CcEEEEeecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 160 IWDDHQ-SRCIGELSFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 160 iWD~~~-~~~~~~~~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+.|.+. .+.-..+++.+.|-.+.|++ ..+++.+ +|.|+-+|+|+. +++.+++.|..++..++++..-. .+++
T Consensus 313 l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p-~~l~- 390 (463)
T KOG0270|consen 313 LKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP-GLLS- 390 (463)
T ss_pred eeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC-ccee-
Confidence 999984 44556788888888888865 3444554 489999999875 99999999999999888876542 4455
Q ss_pred ecCCCceEEEEEcCCcceEeecccc---cceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 234 PGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~~~H~---~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
+++.++.|.+|++.....+....|. +...|.++.|+ .-+||.|+..+. +||||+.+..-+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V 454 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV 454 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence 5999999999999876655555554 34667777777 468899999987 999999887543
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-14 Score=124.07 Aligned_cols=195 Identities=11% Similarity=0.164 Sum_probs=148.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|...|++++.+|-++.+++|+. +++++||+...++...... .+..+.++.+.+..+|++.++ +.|+|
T Consensus 97 ~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~-------~~IkL 166 (311)
T KOG1446|consen 97 PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGS-------ELIKL 166 (311)
T ss_pred CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCC-------CeEEE
Confidence 578899999999998888888886 5799999998777655553 455677778888888887744 47999
Q ss_pred EeCCCC--cEEEEeecC----CceEEEEEeCC--eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc-ceEEEEeCCCCeE
Q 022387 161 WDDHQS--RCIGELSFR----SEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLV 230 (298)
Q Consensus 161 WD~~~~--~~~~~~~~~----~~v~~v~~~~~--~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~-~~~~~s~~~d~~~ 230 (298)
+|++.- ....++... .+...+.|+++ .+++.+. +.+++.|--++..+.++..+.+.. .....++.||+++
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 999873 344444433 36788899875 4555554 789999999999999998876544 2234444556688
Q ss_pred EEEecCCCceEEEEEcCCcc-eEeecc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~-~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+. +|+.||+|.+|+.++.. +..+++ |.+++.|+.|+|....|||++. . +-+|=...
T Consensus 247 vl-~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~-l~fw~p~~ 304 (311)
T KOG1446|consen 247 VL-SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--N-LVFWLPDE 304 (311)
T ss_pred EE-EecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--e-EEEEeccc
Confidence 87 59999999999998764 457777 8999999999999999998864 3 77886553
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=143.39 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=157.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEE--eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
..+++|+.++-|++...|..+| |-+||++.+-..... ...|.+.+..+.+......++.++ .+|-+++||
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-------~~Gilkfw~ 521 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-------ADGILKFWD 521 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-------CcceEEEEe
Confidence 5899999999999999998866 669999987542222 113788888888887777777766 679999999
Q ss_pred CCCCcEEEEeecCCceEEEEEeC--CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 163 DHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
..++..+..+.....+.++..+. +.++++.+ -.|+++|..+.+.++.|.+|.+.+..++||++ +.+|+ +.+-|+
T Consensus 522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D--grWli-sasmD~ 598 (910)
T KOG1539|consen 522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD--GRWLI-SASMDS 598 (910)
T ss_pred cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC--CcEEE-EeecCC
Confidence 99999888888888888877765 34444444 59999999999999999999887766666665 48888 489999
Q ss_pred eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 240 ~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+|++||+-+..+.-.-.-..+.++|.|||+|.+|||...|..-|.+|--.+
T Consensus 599 tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 599 TIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999988876644445688999999999999999999965599997543
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.9e-17 Score=151.22 Aligned_cols=182 Identities=15% Similarity=0.236 Sum_probs=137.1
Q ss_pred EEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC-C
Q 022387 99 CFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-S 176 (298)
Q Consensus 99 ~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~-~ 176 (298)
+++.+-.. .++||+.+.... |...++++........++.+ | .|..+-+|....-..+..+..+ .
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~~~-------hsaav~~lk~~~s~r~~~~G--g-----~~~k~~L~~i~kp~~i~S~~~hes 71 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREFVA-------HSAAVGCLKIRKSSRSLVTG--G-----EDEKVNLWAIGKPNAITSLTGHES 71 (825)
T ss_pred ccceeeeeeccccccchhhhh-------hhhhhceeeeeccceeeccC--C-----CceeeccccccCCchhheeeccCC
Confidence 34444332 356777554322 23444555543344444443 3 4577889998877666666654 5
Q ss_pred ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-CcceE
Q 022387 177 EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK 252 (298)
Q Consensus 177 ~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~ 252 (298)
+|-++.|+....+++. +++|++||+...+.++++.+|......+.|++. +.+.| +|+.|+.+.+||.+ .+...
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~--~~~~a-~gStdtd~~iwD~Rk~Gc~~ 148 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY--GEFFA-SGSTDTDLKIWDIRKKGCSH 148 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc--eEEec-cccccccceehhhhccCcee
Confidence 8999999876444432 489999999999999999998877767776655 48887 79999999999998 56778
Q ss_pred eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 253 ~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
.+++|...|+++.|+|+|+++|+|++|.+ |+|||+.-|+.+++|.
T Consensus 149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 149 TYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFK 193 (825)
T ss_pred eecCCcceeEEEeecCCCceeeccCCcce-eeeecccccccccccc
Confidence 99999999999999999999999999999 9999999999998873
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.8e-15 Score=135.28 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=136.3
Q ss_pred CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC-------CCceEEEEeeecCCceEEEEE--ecC-
Q 022387 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD-------PFREIFRRDFERGGGIGVVEM--LFR- 138 (298)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~- 138 (298)
|.........+...|-+.|+|+.|+-||.+|++|+.|| |.+|.+- +........+ +.|...+..+ .+.
T Consensus 108 WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 108 WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIGSGG 186 (476)
T ss_pred EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEecCCC
Confidence 33333334445578888999999999999999999988 6699652 1111112223 2444444443 333
Q ss_pred -CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE-CCeEEEEEcCC-----------
Q 022387 139 -CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL-EQKIFVYNFAD----------- 203 (298)
Q Consensus 139 -~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~----------- 203 (298)
...+++++ .|+++|+||+..+..+.++.++..+.++..++- .+++++ +|.|.+.++.+
T Consensus 187 ~~~rl~TaS-------~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 187 TNARLYTAS-------EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred ccceEEEec-------CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence 23556666 789999999999999999999999999999873 445554 47888877743
Q ss_pred -----CeEEEEEeccCC--CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCC
Q 022387 204 -----LKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQD 269 (298)
Q Consensus 204 -----~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspd 269 (298)
+..+..+.+|.+ .+.+.+++.|+ .+|+ +|+.||.|+|||...++.. ++..-.++|+.+.+.|=
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLl-SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDG--TLLL-SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCc--cEEE-eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 234556677777 77788888876 7887 6999999999999988754 45446789999999664
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=1.2e-15 Score=126.98 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=148.1
Q ss_pred CCCCCCeEEEEEcC---CCCEEEEEcCCeEE-EEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQ---DHGCFAAGTDHGFR-IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~---dg~~lasgs~~gi~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
++|..+|..++||| +|-+|++++.|+-- +-+-+++.++-+.+- |.+.+-..++ +.+-+..+++. .|-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l--~~na~~aasaa-----adft 82 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATL--NKNATRAASAA-----ADFT 82 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeec--Cchhhhhhhhc-----ccch
Confidence 57778999999985 89999999998843 666788888766664 4554443333 33333222322 6788
Q ss_pred EEEEeCCCCcEEEEeecCCceEEEEEeCC---------------------------------------------eEEE-E
Q 022387 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD---------------------------------------------RIIV-V 191 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------------------------------------------~l~v-~ 191 (298)
.+|||..++..+..+++...|.+++|+.+ -++. +
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 99999999988888888778888887654 1222 2
Q ss_pred ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCC
Q 022387 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG 270 (298)
Q Consensus 192 ~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg 270 (298)
.+++||+||.++++.++++.. ..++.+.-++.++ .+|.+ ...+.|.+||.+. +.++.++ -.-.|.+-.++|+-
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG--~ilTi--a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDG--RILTI--AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKK 236 (334)
T ss_pred cCCceEEEEeccCcEEEEEec-CCCCcceeeccCC--CEEEE--ecCceeEEeccccccceeecc-CccccccccccCCC
Confidence 358999999999999999886 3557777887766 56653 5566899999865 3343332 23458999999999
Q ss_pred CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 271 QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..|+.|++|.. ++.||+.+|..+..|
T Consensus 237 ~~fVaGged~~-~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 237 EFFVAGGEDFK-VYKFDYNTGEEIGSY 262 (334)
T ss_pred ceEEecCcceE-EEEEeccCCceeeec
Confidence 99999999999 999999999887654
No 113
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.68 E-value=5.3e-14 Score=124.08 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=128.1
Q ss_pred CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387 97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (298)
Q Consensus 97 g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~ 175 (298)
++.+++++.++ +++|+.++.+....... ...+..+.+.+++..++++++ .++.|++||..+++.+..+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~--~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV--GQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC--CCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCC
Confidence 35677877654 88999988776555443 334556777777776655442 4688999999998887777655
Q ss_pred CceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc-eEEEEEcCCcc
Q 022387 176 SEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKR 250 (298)
Q Consensus 176 ~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg-~v~i~~~~~~~ 250 (298)
..+..+.++++ .++++. ++.|++||+.+.+.+..+..+.. ...+++ ++++.++++ ++.++ .+.+|+.....
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~--~~dg~~l~~-~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-PEGMAV--SPDGKIVVN-TSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-cceEEE--CCCCCEEEE-EecCCCeEEEEeCCCCe
Confidence 55667778764 344443 47999999998888877764322 233444 455577775 45444 55667877654
Q ss_pred eEeecccccceeEEEECCCCCEEE-EEeCCCCEEEEEECCCCcEEEec
Q 022387 251 TKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 251 ~~~~~~H~~~V~~l~fspdg~~lA-t~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..........+.+++|+|+|++|+ ++..|+. |++||++++++++++
T Consensus 149 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 149 IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKI 195 (300)
T ss_pred EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeee
Confidence 432222334568899999999885 4456888 999999999876643
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.68 E-value=2e-15 Score=134.45 Aligned_cols=198 Identities=16% Similarity=0.214 Sum_probs=140.6
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCce----E-EEEee-ecCCceEEEEEec-CCCEEEEEeCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFRE----I-FRRDF-ERGGGIGVVEMLF-RCNILALVGGGPDPQ 152 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~----~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (298)
.+|...-++++|++... .|++|++ .++.+||+..... + -+..+ .|...+.-+.|.+ +.++++.++
T Consensus 174 ~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~------ 247 (422)
T KOG0264|consen 174 KGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG------ 247 (422)
T ss_pred EeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec------
Confidence 45555678899998544 4666666 5589999864332 1 11112 1566666777754 455667777
Q ss_pred CCCCeEEEEeCCC--CcEEEEe-ecCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEe
Q 022387 153 YPLNKVMIWDDHQ--SRCIGEL-SFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 153 ~~d~~v~iWD~~~--~~~~~~~-~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~ 224 (298)
.|+.+.|||.++ .++.... .+..+|.|+.|++. .++.+. +++|.+||+|+. ++++++..|...+..+.++|
T Consensus 248 -dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP 326 (422)
T KOG0264|consen 248 -DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP 326 (422)
T ss_pred -CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence 689999999995 3333333 34568999999872 333333 689999999875 46788888888777777777
Q ss_pred CCCCeEEEEecCCCceEEEEEcCC---c------------ceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEEC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYAS---K------------RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~---~------------~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~ 288 (298)
+.+ .+|| +++.|+.+.|||+.. + .+.+-.||+..|..+.|+|+. -.+||.++|+. ++||++
T Consensus 327 h~e-tvLA-SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~-LqIW~~ 403 (422)
T KOG0264|consen 327 HNE-TVLA-SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI-LQIWQM 403 (422)
T ss_pred CCC-ceeE-ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce-EEEeec
Confidence 653 4566 567999999999862 1 123556899999999999986 56788898988 999997
Q ss_pred C
Q 022387 289 L 289 (298)
Q Consensus 289 ~ 289 (298)
.
T Consensus 404 s 404 (422)
T KOG0264|consen 404 A 404 (422)
T ss_pred c
Confidence 6
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.4e-14 Score=138.59 Aligned_cols=202 Identities=12% Similarity=0.095 Sum_probs=135.7
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC-----------ceEEE-------------------Eeee--c
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF-----------REIFR-------------------RDFE--R 126 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~-----------~~~~~-------------------~~~~--~ 126 (298)
..+.|...-+.|+|.++|++|.+.+.+| |++|+.... ..+.. ..+. .
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 3456777788899999999888766655 789965221 00000 0000 0
Q ss_pred --------CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEee-cCCceEEEEEeCCeEE--EE-ECC
Q 022387 127 --------GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII--VV-LEQ 194 (298)
Q Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~~~~~l~--v~-~~~ 194 (298)
.-.+.++++..++..+|.++ +|-.|++-+.........+. +..+|.++.++++..+ +. ++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaags-------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGS-------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeec-------CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 01123333333444444433 57789999988766555555 4569999999986433 33 469
Q ss_pred eEEEEEcCCCeEEEEEeccCC------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eee--cccccceeEEE
Q 022387 195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI--MAHDSRIACFA 265 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~--~~H~~~V~~l~ 265 (298)
.|+|||+.++.+.+++..-.. ...++..+++|++..+++ -..|+.|.+++...-.. ..+ +-|.+.+.+++
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~-~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV-PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe-eccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 999999999888877764221 123556778888665554 47788999988876442 233 34555699999
Q ss_pred ECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 266 LTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 266 fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
|||+|+|||+++.||. |-|||+++
T Consensus 240 wsPnG~YiAAs~~~g~-I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQ-ILVWNVDT 263 (933)
T ss_pred EcCCCcEEeeeccCCc-EEEEeccc
Confidence 9999999999999999 99999996
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.6e-15 Score=134.14 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=156.9
Q ss_pred CCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 84 PPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
.+-+|.++.|.|+|. .+++++.+. ...||+++.+..-..... .+..+...+++++++.++++| ..|.|.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-------~~G~I~ 328 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-------NNGHIH 328 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc-------cCceEE
Confidence 345899999999999 888888866 569999887643222221 123445556788999999988 668999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
|....+++.+..++..+.|..+.|+.+ .++++ ..|.|.+||++...+++++..... +....++...++.+||+ |+
T Consensus 329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~-GS 406 (514)
T KOG2055|consen 329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLAT-GS 406 (514)
T ss_pred eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEe-cc
Confidence 999999999999999999999999754 34433 468999999999999999876433 34445555555689995 99
Q ss_pred CCceEEEEEcCC-------cceEeecccccceeEEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~-------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~--Dgt~IrIWd~~tg~~l~~~ 297 (298)
..|.|.||+.+. ++++++..-...|++|+|++|+++||.+|. +.. +|+-.+.+..++..|
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNF 475 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccC
Confidence 999999999653 345567777889999999999999999875 556 898888877666543
No 117
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=1.6e-16 Score=141.95 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=158.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
.-+.+.++.+|++|+.|+.+| +..+|+.+.+..+.... ...+..+.+.++..++|++- .+-+.|||- .
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--~Etv~Dv~~LHneq~~AVAQ--------K~y~yvYD~-~ 199 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--METVRDVTFLHNEQFFAVAQ--------KKYVYVYDN-N 199 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh--hhhhhhhhhhcchHHHHhhh--------hceEEEecC-C
Confidence 456789999999999999988 66999999988877775 67788888888887777764 577899985 4
Q ss_pred CcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387 166 SRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (298)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~ 242 (298)
|..++-+.-...|..+.|-+..++.++ .|.++.-|+..++++..+.+......++.-+|. +-++- .|..+|+|.
T Consensus 200 GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~--NaVih-~GhsnGtVS 276 (545)
T KOG1272|consen 200 GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY--NAVIH-LGHSNGTVS 276 (545)
T ss_pred CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc--cceEE-EcCCCceEE
Confidence 455556666778889999886555443 378999999999999988877666656655543 35555 599999999
Q ss_pred EEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 243 VEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 243 i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|.-+.+. +..+.+|.++|++||+.++|+|+||+|.|.. |+|||++.-..+++|
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTY 331 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeecccccccee
Confidence 99987654 5578899999999999999999999999999 999999998877765
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.2e-15 Score=125.06 Aligned_cols=201 Identities=17% Similarity=0.183 Sum_probs=142.3
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCce-EEEEeee-cCCceEEEEEec--CCCEEEEEeCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFRE-IFRRDFE-RGGGIGVVEMLF--RCNILALVGGGPDPQYP 154 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 154 (298)
+-..|+..|..+...--|+.||+++. ..|+||.+..... ....++. |.+++--+.|.+ -+++||.++ -
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------Y 78 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------Y 78 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------c
Confidence 34567778888888888999998876 5589999977653 2333332 788888888865 577888877 7
Q ss_pred CCeEEEEeCCCCcEEEEe---ecCCceEEEEEeCC---e-EEEE-ECCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeC
Q 022387 155 LNKVMIWDDHQSRCIGEL---SFRSEVRSVKLRRD---R-IIVV-LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQG 225 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~---~~~~~v~~v~~~~~---~-l~v~-~~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~ 225 (298)
|++|.||.-++++-.+.. .+...|.+++|-+. . |+++ .||.|.|.+.++. .-..+.....+.+++.++++.
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 899999999887543322 24458999988653 2 2222 3689999988543 111111112234455555544
Q ss_pred CC---C-----------eEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCCC----CEEEEEeCCCCEEE
Q 022387 226 VG---S-----------LVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLVR 284 (298)
Q Consensus 226 ~d---~-----------~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspdg----~~lAt~S~Dgt~Ir 284 (298)
|- + ..|| +|..|..|+||.++.. ...+|.+|+.-|+.+||.|.- .+||++|+||+ |-
T Consensus 159 pa~~~g~~~~~~~~~~~krlv-SgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-vi 236 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLV-SGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VI 236 (299)
T ss_pred CcCCCccccccCcccccceee-ccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EE
Confidence 32 1 3466 6999999999999884 344799999999999999973 68999999999 98
Q ss_pred EEECC
Q 022387 285 IFNTL 289 (298)
Q Consensus 285 IWd~~ 289 (298)
||-.+
T Consensus 237 Iwt~~ 241 (299)
T KOG1332|consen 237 IWTKD 241 (299)
T ss_pred EEEec
Confidence 99866
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.65 E-value=3.5e-15 Score=129.87 Aligned_cols=206 Identities=15% Similarity=0.217 Sum_probs=138.0
Q ss_pred CCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC
Q 022387 70 QMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (298)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
|++..-........|.+.|+.|++.. +.++.+|.+++++.|-++-. ...+.. .+..+..+......+.++++|
T Consensus 94 WnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcG--- 166 (433)
T KOG0268|consen 94 WNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCG--- 166 (433)
T ss_pred EehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccC---
Confidence 33333333445578888999999998 77788888899999987653 211221 133333444444455555555
Q ss_pred CCCCCCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEE-ECCeEEEEEcCCCeEEEEEeccC----------
Q 022387 150 DPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVV-LEQKIFVYNFADLKLLHQIETIA---------- 214 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~-~~~~I~iwd~~~~~~i~~~~~~~---------- 214 (298)
..|.|||.+....+..++-. ..+.++.|++. .|+++ .++.|.+||+++.++++++....
T Consensus 167 ------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe 240 (433)
T KOG0268|consen 167 ------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPE 240 (433)
T ss_pred ------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCcc
Confidence 45899998887777777755 36888888874 34444 35789999988777665442110
Q ss_pred ------------------------------CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEee--ccccccee
Q 022387 215 ------------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIA 262 (298)
Q Consensus 215 ------------------------------~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~--~~H~~~V~ 262 (298)
+...++++.++|.|+-++ +|+.|.+|+|+.........+ ..-...|.
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv-sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~ 319 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV-SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF 319 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc-cccccceEEEeecCCCcchhhhhHhhhheee
Confidence 011245555666668887 599999999988765432211 11224699
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 263 CFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 263 ~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
||.||-|.+|+.+||+|+. ||+|...-
T Consensus 320 ~Vk~S~Dskyi~SGSdd~n-vRlWka~A 346 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGN-VRLWKAKA 346 (433)
T ss_pred EEEEeccccEEEecCCCcc-eeeeecch
Confidence 9999999999999999999 99998653
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.4e-15 Score=132.11 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=102.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecC-CceEEEEEeCC---eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRD---RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
.|++|++||+.++++...+.++ ..|.++.|++. .++.++ +++|.+.|.+........-.....+..+++.+...+
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence 7899999999999999999865 58999999874 333333 689999999842221111111233556666666544
Q ss_pred eEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387 229 LVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t 290 (298)
.+++ |..||+|+..|... +++.++++|.+.|.+|++++. -.+|+|+|.|++ |+||++..
T Consensus 344 ~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~ 405 (463)
T KOG0270|consen 344 SFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDV 405 (463)
T ss_pred eEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecC
Confidence 4444 89999999988764 567799999999999999965 578999999999 99999873
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=1.3e-14 Score=124.57 Aligned_cols=205 Identities=13% Similarity=0.163 Sum_probs=142.2
Q ss_pred CCCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE------cCC--------CceEE-------------------
Q 022387 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYN------CDP--------FREIF------------------- 120 (298)
Q Consensus 75 ~~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~------~~~--------~~~~~------------------- 120 (298)
........+|.+.|++|.|++.+.++++|+.|+ ..||. +.. .+...
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 334445578889999999999999999999876 45884 110 00000
Q ss_pred --E---Eeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCCeEEEEE-
Q 022387 121 --R---RDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRDRIIVVL- 192 (298)
Q Consensus 121 --~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~~l~v~~- 192 (298)
+ ..+. |.+.+.+..|...+...++++ =|++..+||+++++.+..+..+. ...-++.|+..-++.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS-------WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS-------WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeee-------ccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 0 0000 222223333333444444444 47999999999999999888764 6666777876544443
Q ss_pred --CCeEEEEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEEC
Q 022387 193 --EQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALT 267 (298)
Q Consensus 193 --~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fs 267 (298)
+.+.++||++ ....+..|++|...+.+..|..+. . ++ +|+.|.+|+|||+.+.. +.+++ -.++++.|+.+
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~-vV-SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs 407 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--R-VV-SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVS 407 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccceeEEEEecCC--c-ee-ecCCCceEEEeeeccccCcceeee-cCCccceeEee
Confidence 3699999995 456677889998888888887763 3 33 69999999999998653 33444 46789999999
Q ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 268 QDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 268 pdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
..++.+|.--++.. |||||+...+
T Consensus 408 ~g~~iIAiPhDNRq-vRlfDlnG~R 431 (481)
T KOG0300|consen 408 KGHPIIAIPHDNRQ-VRLFDLNGNR 431 (481)
T ss_pred cCCceEEeccCCce-EEEEecCCCc
Confidence 98888888865555 9999987443
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=2.6e-14 Score=122.74 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=150.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+|...|.++.|-..|+.+++|+- .+..+||++++..+..... |++....+.-.+...++++++ .|-+.++
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsS-------rDtTFRL 340 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSS-------RDTTFRL 340 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcceEEEEec-------cCceeEe
Confidence 468889999999999999999996 5677999999987666654 566666666666666666666 7899999
Q ss_pred EeCCCC-cEEEEeecC-CceEEEEEeCCeEEEEE-C-CeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 161 WDDHQS-RCIGELSFR-SEVRSVKLRRDRIIVVL-E-QKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 161 WD~~~~-~~~~~~~~~-~~v~~v~~~~~~l~v~~-~-~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
||++.. +.+.-|+.+ ..|.++.|+.+.-++.+ + .+|++||++++. ++.++.. ..++.-++++... .++|+ -
T Consensus 341 WDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~--~iIAi-P 416 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGH--PIIAI-P 416 (481)
T ss_pred ccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCC--ceEEe-c
Confidence 999842 334445555 47999999876655554 3 699999998875 4555554 4566777877754 68887 6
Q ss_pred CCCceEEEEEcCCcceE-----eecccccceeEEEECCCC--CEEEEEeCCCCEEEEEECCCC
Q 022387 236 LQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~~-----~~~~H~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~tg 291 (298)
..+..|+++|++...+. .-.+|..-|+|++|..+. .-|.|++.|.. +-=|.+..-
T Consensus 417 hDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~-v~gW~in~p 478 (481)
T KOG0300|consen 417 HDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRM-VAGWKINTP 478 (481)
T ss_pred cCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccce-eeeeEeccc
Confidence 88889999999876543 456899999999998653 56889999998 889998754
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.64 E-value=5.9e-15 Score=136.63 Aligned_cols=197 Identities=10% Similarity=0.183 Sum_probs=146.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCceEEEEeee-cCCceEEEEEe-cCCCEEEEEeCCCCCCCCCCeEE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFE-RGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
.|..=|+.+....+|+.|++++.| +|++|+...........++ |..=+.++... .+...+| +|| -|+.|.
T Consensus 71 ~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva--SgG-----LD~~If 143 (735)
T KOG0308|consen 71 HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA--SGG-----LDRKIF 143 (735)
T ss_pred hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEE--ecC-----CCccEE
Confidence 455678888888899877777765 5899998766311111111 45556666663 3333333 333 579999
Q ss_pred EEeCCCCc--EEEEee----------cCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387 160 IWDDHQSR--CIGELS----------FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 160 iWD~~~~~--~~~~~~----------~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~ 224 (298)
|||++++. .+..++ ....|++++.++....++. ++-+++||-++.+.+.++++|..-+.++-++.
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d 223 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND 223 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcC
Confidence 99999873 332222 1236899999887544443 47899999999999999999988888888777
Q ss_pred CCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
++ ..++ +++.||+|++|++.... +.++..|+..|+++.-+|+-+++.+|+.||. |..=|+++
T Consensus 224 DG--t~~l-s~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~-i~~Tdl~n 286 (735)
T KOG0308|consen 224 DG--TRLL-SASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGN-IYRTDLRN 286 (735)
T ss_pred CC--CeEe-ecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCc-EEecccCC
Confidence 65 6665 59999999999998654 5689999999999999999999999999999 88888887
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-13 Score=127.98 Aligned_cols=202 Identities=14% Similarity=0.224 Sum_probs=149.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEee--ecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.++.|+++||+.+.+.||.|-.+| |-||++...- .....+ ..+..+..++|+ ++..|..++ .+|.|.-
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~drsIE~L~W~-e~~RLFS~g-------~sg~i~E 94 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-FLEPVIHGPEDRSIESLAWA-EGGRLFSSG-------LSGSITE 94 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCc-eeeEEEecCCCCceeeEEEc-cCCeEEeec-------CCceEEE
Confidence 456899999999999999998766 6799998742 222222 135677788887 455555656 4689999
Q ss_pred EeCCCCcEEEEeecC-CceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
||+.+.+....++.. +.+.+++.++ +.+++.+ +|.+.++++...++.....-......+.++++++++..+| +|+
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs 173 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGS 173 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecc
Confidence 999999888777754 5899999876 4566654 4777777777777655443334445678888888888788 499
Q ss_pred CCceEEEEEcCCcceEe-----e---cc-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYASKRTKF-----I---MA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~-----~---~~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.||.|++||.+...... + .. -..-|++|.|-.++ .||+|..-|+ |++||...|.+++.+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSH 241 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhh
Confidence 99999999998654221 1 11 23358899888765 6999999999 999999999987654
No 125
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.6e-13 Score=113.05 Aligned_cols=195 Identities=13% Similarity=0.208 Sum_probs=145.5
Q ss_pred CCCCCCeEEEEEcC----CCCEEEEEcCCeEEEE--EcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQ----DHGCFAAGTDHGFRIY--NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 82 ~~~~~~V~~v~fs~----dg~~lasgs~~gi~vw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
.+|.+.|+.++|-. .|.+||+|+.+-.+|| |+.+++......- |.+.+..+ ..+++-.++. |+ +|
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg-htghilal-yswn~~m~~s--gs-----qd 203 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG-HTGHILAL-YSWNGAMFAS--GS-----QD 203 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC-CcccEEEE-EEecCcEEEc--cC-----CC
Confidence 67888999999964 3568888887554554 6766665443332 33333222 2344444433 33 78
Q ss_pred CeEEEEeCCCCcEEEEeec--------CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEe
Q 022387 156 NKVMIWDDHQSRCIGELSF--------RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~--------~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~ 224 (298)
++||+||++-..++..+.. .+.|.+++..+..-+.++ +....+||++.++.++.+..|...+.++.|++
T Consensus 204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence 9999999998888877642 246888888875444333 46899999999999999999998888999888
Q ss_pred CCCCeEEEEecCCCceEEEEEcCCcc-----eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~~~-----~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.. .++. +|+.|..|++-|++... +.....|+..+-.+.|+|..--|++.|.|++ +.+|-+.
T Consensus 284 ~a--~yll-t~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt-~tlwa~~ 349 (350)
T KOG0641|consen 284 GA--HYLL-TCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT-ATLWALN 349 (350)
T ss_pred Cc--eEEE-EecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce-EEEeccC
Confidence 75 6776 59999999998887542 3466789999999999999999999999999 9999764
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.63 E-value=1.9e-14 Score=134.15 Aligned_cols=194 Identities=12% Similarity=0.151 Sum_probs=141.9
Q ss_pred CCCcccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
.++.+..+|.+.|.|++...++. |++||- .+++||....... ...- |...+-.+...+.. .+++++ .
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~--~l~g-H~asVWAv~~l~e~-~~vTgs-------a 159 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY--SLQG-HTASVWAVASLPEN-TYVTGS-------A 159 (745)
T ss_pred CchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc--ccCC-cchheeeeeecCCC-cEEecc-------C
Confidence 34555678999999999989998 888886 5689997654433 2332 44555544444433 455544 6
Q ss_pred CCeEEEEeCCCCcEEEEeecCC-ceEEEEEeCC-eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 155 LNKVMIWDDHQSRCIGELSFRS-EVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~~-~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
|++||+|.. +.+++++..|. -|..+++-++ .++.|. ++.|++|++ +++.+.++.+|.+.+.+++...+ +..+
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~--~~~I 234 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALS--DGLI 234 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCC--CCeE
Confidence 899999997 66777787765 6888887665 666655 689999999 78888999999888877774443 3566
Q ss_pred EEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+ +++.|++++||... .....+.--...|+++++-++|. +++|+.||. ||||-...
T Consensus 235 v-s~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~-VrVfT~~k 289 (745)
T KOG0301|consen 235 V-STGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGR-VRVFTVDK 289 (745)
T ss_pred E-EecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCC-EEEeccCce-EEEEEecc
Confidence 6 58999999999987 33334443445899999999998 667777999 99998764
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.63 E-value=1.1e-14 Score=134.50 Aligned_cols=204 Identities=15% Similarity=0.199 Sum_probs=133.5
Q ss_pred ccCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCc-----------------------eEE---EEeeecCCceE
Q 022387 80 TSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR-----------------------EIF---RRDFERGGGIG 131 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~-----------------------~~~---~~~~~~~~~~~ 131 (298)
+..+|...|.+++|.++. ..|++|+.|| +.|||+.-.. ... ....++...+.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 356788899999999966 4788999887 7799984221 000 00000222333
Q ss_pred E---EEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe------ec--CC----ceEEEEEeC--C-eEEEEEC
Q 022387 132 V---VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL------SF--RS----EVRSVKLRR--D-RIIVVLE 193 (298)
Q Consensus 132 ~---~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~------~~--~~----~v~~v~~~~--~-~l~v~~~ 193 (298)
. +.+..+...+|.+++ .|+.|||||+++....... .+ ++ .+.++.... . .++.|+|
T Consensus 219 ssvTvv~fkDe~tlaSaga------~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGA------ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred eeeEEEEEeccceeeeccC------CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 2 233445666777764 4799999999986554332 12 21 244554443 3 4555779
Q ss_pred CeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCC
Q 022387 194 QKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQD 269 (298)
Q Consensus 194 ~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspd 269 (298)
+.|++||+.... ++..+.++...-.-+.-.-.+|+++++ +|+.|+...+|.+..-. ...+.+|...|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~-SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL-SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe-ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999996432 333333322221122223345668888 69999999999998654 4578999999999999875
Q ss_pred C-CEEEEEeCCCCEEEEEECCCC
Q 022387 270 G-QLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 270 g-~~lAt~S~Dgt~IrIWd~~tg 291 (298)
. .-+||+|+|-+ ++||++..|
T Consensus 372 ~~t~v~TcSdD~~-~kiW~l~~~ 393 (720)
T KOG0321|consen 372 ATTPVATCSDDFR-VKIWRLSNG 393 (720)
T ss_pred cCCCceeeccCcc-eEEEeccCc
Confidence 3 56788899999 999999766
No 128
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.63 E-value=2e-14 Score=121.99 Aligned_cols=195 Identities=11% Similarity=0.114 Sum_probs=141.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceE-EEEeee----cCCceEEEEEec--CCCEEEEEeCCCCCCCCCC
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI-FRRDFE----RGGGIGVVEMLF--RCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~-~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~ 156 (298)
+-.+|.||-|.|+++.||+-.+..|.+|+++..... ...... +......-.|++ +++.+++.+ |+
T Consensus 122 avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~--------d~ 193 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS--------DS 193 (370)
T ss_pred HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--------CC
Confidence 345899999999999999988888999999875541 111110 233344455654 455555554 68
Q ss_pred eEEEEeCCCCcEEEEee--cCCceEEEEEeCCe---EEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCe
Q 022387 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR---IIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~---l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
++..||+++..+...++ +.+.|..+.|+++. ++.+++ +.|+|||.+. ..++.++..|.+.+.++.|++..|..
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 89999999977766554 45679999999863 334443 7999999964 56788888899988888888876544
Q ss_pred EEEEecCCCceEEEEEcC------------------------------CcceEeecccccceeEEEEC-CCCCEEEEEeC
Q 022387 230 VLVCPGLQKGQVRVEHYA------------------------------SKRTKFIMAHDSRIACFALT-QDGQLLATSST 278 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~------------------------------~~~~~~~~~H~~~V~~l~fs-pdg~~lAt~S~ 278 (298)
+| +|+.|..|.+|-.. .+.+.++..|...|.+++|| .|.=.||+-|+
T Consensus 274 iL--s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 274 IL--SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred EE--ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 43 58889888886522 11233678899999999998 56778999999
Q ss_pred CCCEEEEEECC
Q 022387 279 KGTLVRIFNTL 289 (298)
Q Consensus 279 Dgt~IrIWd~~ 289 (298)
||. +-|=.+.
T Consensus 352 DGR-viIs~V~ 361 (370)
T KOG1007|consen 352 DGR-VIISSVP 361 (370)
T ss_pred Cce-EEeecCC
Confidence 999 7565543
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-13 Score=118.03 Aligned_cols=199 Identities=16% Similarity=0.234 Sum_probs=128.3
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC--CceEE--EEeeecCCceEEEEEecC--CCEEEEEeCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIF--RRDFERGGGIGVVEMLFR--CNILALVGGGPDPQ 152 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~--~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 152 (298)
+-..|..-|.++.|.+-|+.+|+++.|+ ++|||... ..... .... |++.+--+.|.+. +..+|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS------ 80 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCS------ 80 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEe------
Confidence 3456777899999999999999998755 89999533 22222 2222 6787777777543 56667776
Q ss_pred CCCCeEEEEeCCCC-------cEEEE--e-ecCCceEEEEEeCCe----EEEE-ECCeEEEEEcCC--------------
Q 022387 153 YPLNKVMIWDDHQS-------RCIGE--L-SFRSEVRSVKLRRDR----IIVV-LEQKIFVYNFAD-------------- 203 (298)
Q Consensus 153 ~~d~~v~iWD~~~~-------~~~~~--~-~~~~~v~~v~~~~~~----l~v~-~~~~I~iwd~~~-------------- 203 (298)
-|++++||.-... +-+.. + +-.+.|+.+.|.+.+ ++.+ .+|.+|||+..+
T Consensus 81 -~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 81 -YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred -cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 6899999974211 11111 1 223466667665531 1222 135555554421
Q ss_pred -----------------------------------------------------CeEEEEEeccCCCcceEEEEeCC--CC
Q 022387 204 -----------------------------------------------------LKLLHQIETIANPKGLCAVSQGV--GS 228 (298)
Q Consensus 204 -----------------------------------------------------~~~i~~~~~~~~~~~~~~~s~~~--d~ 228 (298)
...+.++..|..++..++++|.- .-
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 11222333445555566666542 12
Q ss_pred eEEEEecCCCceEEEEEcCC---------------------cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 229 LVLVCPGLQKGQVRVEHYAS---------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~---------------------~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
.+||+ ++.|| |+||.++. ..+..+..|++.|+.|.|+=.|..|++.|+||. ||+|.
T Consensus 240 ~~lAv-A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWk 316 (361)
T KOG2445|consen 240 HLLAV-ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWK 316 (361)
T ss_pred eeEEE-eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehh
Confidence 56664 89999 99988762 012357889999999999999999999999999 99997
Q ss_pred CC
Q 022387 288 TL 289 (298)
Q Consensus 288 ~~ 289 (298)
..
T Consensus 317 an 318 (361)
T KOG2445|consen 317 AN 318 (361)
T ss_pred hh
Confidence 54
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=134.75 Aligned_cols=198 Identities=14% Similarity=0.181 Sum_probs=139.2
Q ss_pred CeEEEEEcCCCC----EEEEEc-C-CeEEEEEcCCCce-EEEEeee----cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 87 TLLHISFNQDHG----CFAAGT-D-HGFRIYNCDPFRE-IFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 87 ~V~~v~fs~dg~----~lasgs-~-~gi~vw~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
+|...+|.-... -+++.. + ..++.|++..... .++..-. ....+.++++++.+|..++.. +.
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-------S~ 469 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-------SK 469 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-------cC
Confidence 666666654211 133333 3 4477998876432 2222210 124567777788888766655 45
Q ss_pred CeEEEEeCCCCcEEEEe----ecCCceEEEEEeC-Ce-EEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 156 NKVMIWDDHQSRCIGEL----SFRSEVRSVKLRR-DR-IIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~----~~~~~v~~v~~~~-~~-l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
|+|.+++.++|-....+ .+..+|..++... +. ++.+ .+|-+++||+.+..++.++..... ...+..+...
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-~~~iv~hr~s-- 546 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-ITGIVYHRVS-- 546 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-cceeeeeehh--
Confidence 89999999999877776 4567899999875 33 3333 359999999998888888775433 2233333333
Q ss_pred eEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 229 LVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.++|+ +-.|=.|+++|..+.++ ..|.+|...|++++|||||++|++++.|++ ||+||+.+|++|--
T Consensus 547 ~l~a~-~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~ 613 (910)
T KOG1539|consen 547 DLLAI-ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDG 613 (910)
T ss_pred hhhhh-hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeee
Confidence 45554 66777888877776654 589999999999999999999999999999 99999999998753
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.8e-15 Score=147.71 Aligned_cols=202 Identities=14% Similarity=0.218 Sum_probs=144.3
Q ss_pred CeEEEEEcCCCCE----EEEEcCCe-EEEEEcCCC---c---eEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCC
Q 022387 87 TLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF---R---EIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYP 154 (298)
Q Consensus 87 ~V~~v~fs~dg~~----lasgs~~g-i~vw~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (298)
+-+.++|.+.|.. ||.|.+|| |.+|+.... . .+.++.- |.+.|..+++.. .++.+|.++ +
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa-------~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA-------D 137 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccC-------C
Confidence 5667999987775 88888877 789987652 1 1112221 788888888854 455666554 6
Q ss_pred CCeEEEEeCCCCcEEE---EeecCCceEEEEEeCC--eEEE-EE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387 155 LNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD--RIIV-VL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~---~~~~~~~v~~v~~~~~--~l~v-~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
+|+|.|||+.+-+.-. .....+.|.+++|+.+ ++++ +. ++++.|||++..+++..+..+.....+-.+.++++
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 7999999998743221 2234568999999975 3333 33 37999999998888877776544333445555555
Q ss_pred --CeEEEEecCCCc-eEEEEEcCC--cceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 228 --SLVLVCPGLQKG-QVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 228 --~~~la~sGs~dg-~v~i~~~~~--~~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.++++++++..- .|.+||+.. .+++++.+|...|.+|.|++.+ .+|+|++.|+. |-+|+.++|+.+.++
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGEL 292 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeec
Confidence 456664443322 566699774 4567889999999999999766 99999999999 999999999998775
No 132
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.62 E-value=2.1e-14 Score=139.62 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=131.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEc--C-CeEEEEEcCCCc------------eEEEEeeecCCceEEEEEecCCCEEEEEeCC
Q 022387 84 PPPTLLHISFNQDHGCFAAGT--D-HGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs--~-~gi~vw~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
+...|.+|+.+|||..+|+|+ - .|++||+.++.- .+.... .|.+.+.++.|++++.++|+++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~-~h~~sv~CVR~S~dG~~lAsGS-- 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD-DHDGSVNCVRFSPDGSYLASGS-- 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec-cccCceeEEEECCCCCeEeecc--
Confidence 344699999999999999998 3 458899875431 111111 1788899999999999888877
Q ss_pred CCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 149 ~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
+|+-|.||+.... .. +.+.. .+++ .-+.+..+.+..+.+|... +..+.++|++
T Consensus 89 -----DD~~v~iW~~~~~-~~------~~~fg----------s~g~---~~~vE~wk~~~~l~~H~~D--V~Dv~Wsp~~ 141 (942)
T KOG0973|consen 89 -----DDRLVMIWERAEI-GS------GTVFG----------STGG---AKNVESWKVVSILRGHDSD--VLDVNWSPDD 141 (942)
T ss_pred -----CcceEEEeeeccc-CC------ccccc----------cccc---ccccceeeEEEEEecCCCc--cceeccCCCc
Confidence 6799999997641 00 01100 0000 1123455677788877655 4556666677
Q ss_pred eEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.++| +++.|++|.||+..+ +.++++++|.+.|-.+.|.|-|+||||-|+|++ |+||++.+-.+.
T Consensus 142 ~~lv-S~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-ikvwrt~dw~i~ 206 (942)
T KOG0973|consen 142 SLLV-SVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-LKVWRTSDWGIE 206 (942)
T ss_pred cEEE-EecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce-EEEEEcccceee
Confidence 8998 699999999999765 556799999999999999999999999999999 999997764443
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.8e-14 Score=135.00 Aligned_cols=175 Identities=13% Similarity=0.137 Sum_probs=137.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
++++++|+.+|+++|.|++|. |++-+++....+....- |++.+..+.+.+.++++|+++ .||+|++||+++
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss-------~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSS-------CDGKVQIWDLQD 169 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEe-------cCceEEEEEccc
Confidence 899999999999999999976 78999877665555544 688999999999999999998 689999999999
Q ss_pred CcEEEEeec---------CCceEEEEEeCC---eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 166 SRCIGELSF---------RSEVRSVKLRRD---RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 166 ~~~~~~~~~---------~~~v~~v~~~~~---~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+.+...+.. ...+..++|+|+ .++.+.++.|++|+..+.....++.........+.+.++|.|.+||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 877655432 234566889986 44556789999999999988888776333333566667777899995
Q ss_pred ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEE
Q 022387 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL 273 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~l 273 (298)
++-||.|.|||.++-.. ..-...|.|++|-|++.-+
T Consensus 250 -s~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 250 -STLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred -eccCCcEEEEecccchh---ccccceeEEEecCCCCCee
Confidence 99999999999987221 2224579999999987644
No 134
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.61 E-value=1.6e-13 Score=115.09 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=144.5
Q ss_pred CCCCCCeEEEEEcCC-CCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~d-g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
++|.+.|-.++|+|. ...||+++. +.+++||....++....+. .++--.+.|.+++..+++++ .|..|.
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~--~~eni~i~wsp~g~~~~~~~-------kdD~it 131 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET--KGENINITWSPDGEYIAVGN-------KDDRIT 131 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec--cCcceEEEEcCCCCEEEEec-------CcccEE
Confidence 567778999999974 457777665 7799999999988777764 56666778888888887766 444555
Q ss_pred EEeCCCCc------------------------------EEEEee------------cCCceEEEEEeCC--eEEEEE-CC
Q 022387 160 IWDDHQSR------------------------------CIGELS------------FRSEVRSVKLRRD--RIIVVL-EQ 194 (298)
Q Consensus 160 iWD~~~~~------------------------------~~~~~~------------~~~~v~~v~~~~~--~l~v~~-~~ 194 (298)
..|.++.+ ++..+. |.....|+.|+++ +++++. +-
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 55544322 222222 2234577778875 455544 35
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEE
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLL 273 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~l 273 (298)
.+.+||+...-+++.|..+.-|+..++|+.++ .+|| +||.|-.|-|=+.+++ ++..+ .|.++...|+|+|...+|
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTlSFS~dg--~~lA-SaSEDh~IDIA~vetGd~~~eI-~~~~~t~tVAWHPk~~LL 287 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTLSFSHDG--RMLA-SASEDHFIDIAEVETGDRVWEI-PCEGPTFTVAWHPKRPLL 287 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEEEeccCc--ceee-ccCccceEEeEecccCCeEEEe-eccCCceeEEecCCCcee
Confidence 89999999999999999888888888888765 9999 6999999999666555 44444 488999999999999999
Q ss_pred EEEeCC---------CCEEEEEECCC
Q 022387 274 ATSSTK---------GTLVRIFNTLD 290 (298)
Q Consensus 274 At~S~D---------gt~IrIWd~~t 290 (298)
|=+.+| |+ +|||-+.+
T Consensus 288 AyA~ddk~~d~~reag~-vKiFG~~~ 312 (313)
T KOG1407|consen 288 AYACDDKDGDSNREAGT-VKIFGLSN 312 (313)
T ss_pred eEEecCCCCccccccce-eEEecCCC
Confidence 988765 46 78876543
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.3e-13 Score=118.34 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=136.0
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCC--CEEEEEeCCCCCCCCCCe
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNK 157 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~ 157 (298)
...|..+|++++.+ |.|+|+|+. ++|+|||+.....+...-. |.+.+..+.+...- +.|+.++ .||.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s-------dDG~ 108 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS-------DDGH 108 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec-------CCCc
Confidence 46788899999987 789999986 7799999988766544432 56666666654332 2344444 6899
Q ss_pred EEEEeCCCCcEEEEeecC-CceEEEEEeCC-eEE--EEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 158 VMIWDDHQSRCIGELSFR-SEVRSVKLRRD-RII--VVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~-~~v~~v~~~~~-~l~--v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
|.+|++..-.++..++.+ ..|+.++.||. .++ +..|+.+++||+-+++.-..++-. +....+.++ +.+..+++
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~--~~Gd~F~v 185 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWS--PQGDHFVV 185 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEc--CCCCEEEE
Confidence 999999998888888755 47999999985 333 345789999999776654333322 122234444 55566665
Q ss_pred ecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.....|-||...+..+.....-...+.|+.|- ++.+|++|++|+. |++||..++.++.+|
T Consensus 186 --~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 186 --SGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEF 245 (362)
T ss_pred --EeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceee
Confidence 23346777777665433211122446666664 4678999999999 999999988887665
No 136
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.5e-14 Score=126.72 Aligned_cols=189 Identities=16% Similarity=0.207 Sum_probs=134.3
Q ss_pred EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387 89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~ 167 (298)
.+++|++||..||+|+.|| +|||++.....+....- |.+++..+.+++++..++..+ .| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~lasig-------~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLASIG-------AD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEEec-------CC-ceEEEEeccCc
Confidence 7899999999999999877 88999766554332221 678899999999999999988 45 69999999997
Q ss_pred EEEEee-cCC--ceEEEEEeCC----eEEE-EE---CCeEEEEEcCCC---eEE--EEEeccCCCcceEEEEeCCCCeEE
Q 022387 168 CIGELS-FRS--EVRSVKLRRD----RIIV-VL---EQKIFVYNFADL---KLL--HQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 168 ~~~~~~-~~~--~v~~v~~~~~----~l~v-~~---~~~I~iwd~~~~---~~i--~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
.+.... +.. ....+.|..+ .+.+ +. .+.|+.||+... ..+ ++.....+.+.+++++. ++.++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~--dGkf~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD--DGKFL 296 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC--CCcEE
Confidence 766655 221 2334555433 2222 22 156777666321 111 11111223455566655 45999
Q ss_pred EEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 232 VCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
|+ |+.+|.|.|++...-+.. .-++|...|+.|.|+||.+++++-|.|.+ ++|..+.-
T Consensus 297 Al-GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v 355 (398)
T KOG0771|consen 297 AL-GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV 355 (398)
T ss_pred EE-eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence 97 999999999887655433 55789999999999999999999999999 99987653
No 137
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.59 E-value=6.7e-14 Score=130.51 Aligned_cols=193 Identities=13% Similarity=0.129 Sum_probs=125.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee-cCCceEE-EEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE-RGGGIGV-VEMLF-RCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~d~~ 157 (298)
..|...|+.+++.+.. ++++|++ ++++||+-...+.+-...+. +.+-+.. +++.. +...+.+.+ .|.+
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-------~D~~ 82 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-------MDTT 82 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-------ccce
Confidence 5788899999988755 6778876 55899987544433322221 1111111 11111 111122222 3444
Q ss_pred EEEEeCCCCcEEEE---------------------------------------eecC-CceEEEEEeCCeEE-EE-ECCe
Q 022387 158 VMIWDDHQSRCIGE---------------------------------------LSFR-SEVRSVKLRRDRII-VV-LEQK 195 (298)
Q Consensus 158 v~iWD~~~~~~~~~---------------------------------------~~~~-~~v~~v~~~~~~l~-v~-~~~~ 195 (298)
+.+|.......+.. +..| ..|.++..-+...+ .+ .|.+
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKt 162 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSADKT 162 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCcce
Confidence 44444433333322 2322 35555544333222 22 3578
Q ss_pred EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEE
Q 022387 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT 275 (298)
Q Consensus 196 I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt 275 (298)
|++|.- ++.+++|.+|...+..+++-++. .++ |++.||.|+.|++....+..+.+|+..|.+|+...++..++|
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~fl--ScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFL--SCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCC--CeE--eecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 888864 67788999998888777776653 455 479999999999988888999999999999998888999999
Q ss_pred EeCCCCEEEEEECC
Q 022387 276 SSTKGTLVRIFNTL 289 (298)
Q Consensus 276 ~S~Dgt~IrIWd~~ 289 (298)
+|+|++ +|||+..
T Consensus 237 ~gEDrt-lriW~~~ 249 (745)
T KOG0301|consen 237 TGEDRT-LRIWKKD 249 (745)
T ss_pred ecCCce-EEEeecC
Confidence 999999 9999977
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.58 E-value=7.1e-13 Score=119.93 Aligned_cols=187 Identities=19% Similarity=0.316 Sum_probs=130.8
Q ss_pred CCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
.-|.|++|.++|+.+ +|.. +.|.||+..+.+...... +|++++..+++..++.++- |+ .|+.|..||-.
T Consensus 247 k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS---Gg-----KDRki~~Wd~~ 316 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS---GG-----KDRKIILWDDN 316 (626)
T ss_pred eEEEEEEEcCCCCEE-eecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee---cC-----ccceEEecccc
Confidence 579999999999954 5554 447799998776544444 5899999999987776543 44 57999999932
Q ss_pred CCcEEEEeec------------------------------------------CCceEEEEEeC--CeEEEEE-CCeEEEE
Q 022387 165 QSRCIGELSF------------------------------------------RSEVRSVKLRR--DRIIVVL-EQKIFVY 199 (298)
Q Consensus 165 ~~~~~~~~~~------------------------------------------~~~v~~v~~~~--~~l~v~~-~~~I~iw 199 (298)
- +.+++++. ......++.++ +.++.+. ++.+++|
T Consensus 317 y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 317 Y-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred c-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 1 11111110 01222233333 2344443 5799999
Q ss_pred EcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC
Q 022387 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (298)
Q Consensus 200 d~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D 279 (298)
+ +.+++.+... ..+..+.+|++ .+ .+|+ |+..|...+.|.++..+.+++.-++++++|+|+|+|.+||.||.|
T Consensus 396 ~--~~k~~wt~~~-~d~~~~~~fhp--sg-~va~-Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 396 N--DHKLEWTKII-EDPAECADFHP--SG-VVAV-GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred c--CCceeEEEEe-cCceeEeeccC--cc-eEEE-eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence 9 6666666554 34455555555 44 6664 999999999998887776666558999999999999999999999
Q ss_pred CCEEEEEECCCC
Q 022387 280 GTLVRIFNTLDG 291 (298)
Q Consensus 280 gt~IrIWd~~tg 291 (298)
+. |.||.+...
T Consensus 469 ~~-iyiy~Vs~~ 479 (626)
T KOG2106|consen 469 NH-IYIYRVSAN 479 (626)
T ss_pred Ce-EEEEEECCC
Confidence 99 999998854
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.57 E-value=6.5e-14 Score=126.34 Aligned_cols=193 Identities=10% Similarity=0.139 Sum_probs=143.6
Q ss_pred EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387 89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~ 167 (298)
.|++......|+++|+..+ ++|||++...+..... .|...+.++.+....+++|.++.| |.|.|..+.+++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~YN~~DeyiAsvs~g-------Gdiiih~~~t~~ 154 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVDYNNTDEYIASVSDG-------GDIIIHGTKTKQ 154 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEEecCCcceeEEeccC-------CcEEEEecccCc
Confidence 3444444458999998865 6799998543322222 156677777777778888888744 779999999988
Q ss_pred EEEEeecC--CceEEEEEeC--C-eEEEEEC-CeEEEEEcCCCeEEEEEe-ccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387 168 CIGELSFR--SEVRSVKLRR--D-RIIVVLE-QKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (298)
Q Consensus 168 ~~~~~~~~--~~v~~v~~~~--~-~l~v~~~-~~I~iwd~~~~~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sGs~dg~ 240 (298)
...+|.+. +.|.-+.+++ . .+.++.+ |.|.+||+..+.++..+. .|..|..-++|++.. ..|.++-+.|+.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn--e~l~vsVG~Dkk 232 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN--EALLVSVGYDKK 232 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc--cceEEEecccce
Confidence 87788775 3565677765 2 3334444 899999998887766654 588888888888764 555556789999
Q ss_pred EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 241 VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 241 v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
|.+||...+..........+.++|+|+++|.+|+.|...|. |..||++..+
T Consensus 233 i~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~-~i~YD~R~~k 283 (673)
T KOG4378|consen 233 INIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGE-LIAYDMRSTK 283 (673)
T ss_pred EEEeecccccccceeeecCCcceeeecCCceEEEeecCCce-EEEEecccCC
Confidence 99999987665544445679999999999999999999999 9899999754
No 140
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=5.3e-14 Score=118.06 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCCeEEEEecCCCceEEEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 226 VGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+|+.++| +++.||.|+|+..++. ++..++.|...|++++|+||..++|.+|.|++ |-+|++
T Consensus 261 pD~KIlA-TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 261 PDGKILA-TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred cCCcEEe-ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 4668888 5889999999988764 56699999999999999999999999999999 999986
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.57 E-value=5.9e-13 Score=117.23 Aligned_cols=205 Identities=13% Similarity=0.142 Sum_probs=142.9
Q ss_pred CCCcccCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCC-CEEEEE
Q 022387 76 PAESTSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRC-NILALV 145 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 145 (298)
..+.+..+|+++|..++|+|- ...||+|++|. +.||.+-... .+..+.. |...++.+.|.+.- +.|+.+
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhc
Confidence 346677899999999999994 55799999976 7799874432 2223333 67788999998754 455555
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcce-EE
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGL-CA 221 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~-~~ 221 (298)
+ .|++|.+||+.+++.+.++.+...|.++.|+.++-..++ |.+|||||.++++.+..-..|...... ..
T Consensus 151 g-------~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 151 G-------SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred c-------CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 5 579999999999999999998889999999876544433 589999999999999887666543222 22
Q ss_pred EEeCCCCeEEEEecC---CCceEEEEEcCCcc----eEeecccccceeEEEECCCCCEEEEEeC-CCCEEEEEECCCCcE
Q 022387 222 VSQGVGSLVLVCPGL---QKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL 293 (298)
Q Consensus 222 ~s~~~d~~~la~sGs---~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~tg~~ 293 (298)
|-.++ . ++++|. .+-.+.+||-+.-. +.++...+ .|--==|.+|-+.+--+|. |+. ||-|.+.....
T Consensus 224 fl~~g--~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P 298 (472)
T KOG0303|consen 224 FLASG--K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPP 298 (472)
T ss_pred EeccC--c-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCc
Confidence 22233 4 444554 35677888865422 12343333 3433346788776666654 777 99999887653
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-13 Score=115.74 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=130.1
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
+...|...|..+..--.+++|++++.++ |.+|++. ++.+....- .........++++++.++.++ -.-.|
T Consensus 182 f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GRFia~~g-------FTpDV 252 (420)
T KOG2096|consen 182 FERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSG-------FTPDV 252 (420)
T ss_pred cchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCcEEEEec-------CCCCc
Confidence 3455666777788888899999999866 8899998 444433332 122344566788999888877 33459
Q ss_pred EEEeCCC---C---cE--EEEeecC-CceEEEEEeCC--eEEEE-ECCeEEEEEcC-------CCeEEEEEec--cCCCc
Q 022387 159 MIWDDHQ---S---RC--IGELSFR-SEVRSVKLRRD--RIIVV-LEQKIFVYNFA-------DLKLLHQIET--IANPK 217 (298)
Q Consensus 159 ~iWD~~~---~---~~--~~~~~~~-~~v~~v~~~~~--~l~v~-~~~~I~iwd~~-------~~~~i~~~~~--~~~~~ 217 (298)
++|.+-- | +. +.++..+ +.|..++|+++ +++.+ -+|+++|||+. +.+.+++... +....
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~ 332 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS 332 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC
Confidence 9998531 2 11 2233433 47999999864 34433 47999999983 2333333321 11222
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
.-+.++-.|.+..||+ +....+.++..+... ..++ +.|...|++|+|+++|+++||++ |+. +||+.-..|
T Consensus 333 ~p~RL~lsP~g~~lA~--s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~-vrv~~ntpg 404 (420)
T KOG2096|consen 333 EPVRLELSPSGDSLAV--SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRY-VRVIRNTPG 404 (420)
T ss_pred CceEEEeCCCCcEEEe--ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-cee-eeeecCCCc
Confidence 2344555555688885 555678887665543 3333 57999999999999999999999 777 999874433
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.5e-14 Score=141.21 Aligned_cols=201 Identities=17% Similarity=0.190 Sum_probs=147.1
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEcCCe-EEEEEcCCCceEEEE-eeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRR-DFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~-~lasgs~~g-i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 157 (298)
..|.+.|+.+.||+.+. +||+|+++| |.|||+...+.-+.. ...--..|.++.|... ...++.++ .++.
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-------~sg~ 185 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-------PSGR 185 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-------CCCC
Confidence 67888999999999765 999999977 889999764432222 1001345666666422 33344433 5689
Q ss_pred EEEEeCCCCcEEEEeecCCc---eEEEEEeCC---eEEEEEC----CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCC
Q 022387 158 VMIWDDHQSRCIGELSFRSE---VRSVKLRRD---RIIVVLE----QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~~---v~~v~~~~~---~l~v~~~----~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
+.|||++..+.+..+..... +..+.||++ .++++++ -.|.+||+|. ..++++++.|..- ++++++.+
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--ilslsWc~ 263 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--ILSLSWCP 263 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc--eeeeccCC
Confidence 99999999988888877653 778999985 5667664 3899999964 5566777777554 45555544
Q ss_pred CCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCc
Q 022387 227 GSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
....++.++..|+.|.+|+.++.++. .+.....-+..+.|+|.- ..||.+|.||. |-|+.+.++.
T Consensus 264 ~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~ 330 (1049)
T KOG0307|consen 264 QDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTD 330 (1049)
T ss_pred CCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCC
Confidence 44333336899999999999987654 777777789999999875 59999999999 9999988754
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.55 E-value=1.2e-13 Score=123.43 Aligned_cols=198 Identities=10% Similarity=0.111 Sum_probs=133.4
Q ss_pred CCCCCCeEEEEEcCCC--CEEEEEcCCe-EEEEEcCCCce----EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDH--GCFAAGTDHG-FRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg--~~lasgs~~g-i~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
.-+..+|++++|+|-- +++|+|...| |-+||+.+.+. ++...- |.+.|..+.+.+.....++++. .
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS------y 255 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS------Y 255 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec------c
Confidence 3445699999999954 4778887766 67999953321 111111 5667888888765444344331 6
Q ss_pred CCeEEEEeCCCCcE--EEEeecCC-ceEEEEEeCC-eEEEEEC--CeEEEEEcCCCeE-EEEEeccCCCcceEEEEeCCC
Q 022387 155 LNKVMIWDDHQSRC--IGELSFRS-EVRSVKLRRD-RIIVVLE--QKIFVYNFADLKL-LHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 155 d~~v~iWD~~~~~~--~~~~~~~~-~v~~v~~~~~-~l~v~~~--~~I~iwd~~~~~~-i~~~~~~~~~~~~~~~s~~~d 227 (298)
||+|++-|+++... +...+... ....+.|+.. ..++..+ |...+||++..+. ...+..|...+..++++|--.
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 89999999987642 22222122 2344555532 3333332 7889999976654 444555666677777766432
Q ss_pred CeEEEEecCCCceEEEEEcCC---cc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 228 SLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~---~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.+|| +++.|++.+|||+.. +. ......|...|++..|||+|-.|+|.+.|.. |||||..
T Consensus 336 -~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss 399 (498)
T KOG4328|consen 336 -WFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSS 399 (498)
T ss_pred -hhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecc
Confidence 4555 699999999999863 22 3456689999999999999877999999999 9999973
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.8e-13 Score=113.83 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=145.4
Q ss_pred ccCCCCCCeEEEEEcC--CCCEEEEEcCCe-EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~--dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
...+|.++|..++|-. -|.+||+.+-|| +.||.-+.++.....++. |...+..+++.++.-.+.+++++ .|
T Consensus 51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas-----SD 125 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS-----SD 125 (299)
T ss_pred EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEee-----CC
Confidence 3468899999999985 799999999755 789988776532222221 67888999988776555555543 68
Q ss_pred CeEEEEeCCCC-cEE-EEe--ecCCceEEEEEeCC----------------eEEEE-ECCeEEEEEcCCC--eEEEEEec
Q 022387 156 NKVMIWDDHQS-RCI-GEL--SFRSEVRSVKLRRD----------------RIIVV-LEQKIFVYNFADL--KLLHQIET 212 (298)
Q Consensus 156 ~~v~iWD~~~~-~~~-~~~--~~~~~v~~v~~~~~----------------~l~v~-~~~~I~iwd~~~~--~~i~~~~~ 212 (298)
|+|.|.+.+.. ... ..+ .+.--|.++++.|- +++.+ .|+.|+||+..+. +.-+++..
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 99999998764 221 112 23335777777542 24443 4689999999653 44456788
Q ss_pred cCCCcceEEEEeCC--CCeEEEEecCCCceEEEEEcCCc----ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 213 IANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 213 ~~~~~~~~~~s~~~--d~~~la~sGs~dg~v~i~~~~~~----~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
|...+.-++.+|.- ....|| +++.||.|.||....+ +.+.++....++..+.||..|..||.++-|.. |++|
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iA-S~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk-vtlw 283 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIA-SCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK-VTLW 283 (299)
T ss_pred cchhhhhhhhccccCCCceeeE-EecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE-EEEE
Confidence 88877777776643 124666 6999999999987643 12345556788999999999999999999998 9999
Q ss_pred ECC
Q 022387 287 NTL 289 (298)
Q Consensus 287 d~~ 289 (298)
.-.
T Consensus 284 ke~ 286 (299)
T KOG1332|consen 284 KEN 286 (299)
T ss_pred EeC
Confidence 854
No 146
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.53 E-value=5.2e-13 Score=125.11 Aligned_cols=207 Identities=14% Similarity=0.106 Sum_probs=129.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcC---CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC------
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTD---HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------ 151 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~---~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 151 (298)
...++.+++|++||++|+|+|+|-. ..++||++.....+....- |+-.+.++.+++...+++.++..-|.
T Consensus 74 vnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvd-HKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~d 152 (1080)
T KOG1408|consen 74 VNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVD-HKYNVTCVAFSPGNKYVVSVGSQHDMIVNVND 152 (1080)
T ss_pred ecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhh-ccccceeeeecCCCcEEEeeccccceEEEhhh
Confidence 3456669999999999999999953 3488999988775433321 56677788887777776654432110
Q ss_pred --------------------CC---------CCCeEEEEeCCCCcEEE-------------Eee----------------
Q 022387 152 --------------------QY---------PLNKVMIWDDHQSRCIG-------------ELS---------------- 173 (298)
Q Consensus 152 --------------------~~---------~d~~v~iWD~~~~~~~~-------------~~~---------------- 173 (298)
+. ....|++|.++-+.... ++.
T Consensus 153 Wr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAe 232 (1080)
T KOG1408|consen 153 WRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAE 232 (1080)
T ss_pred hhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCccccc
Confidence 00 12346777654332100 000
Q ss_pred -------------cC-------------CceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEec-cC-----------
Q 022387 174 -------------FR-------------SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIET-IA----------- 214 (298)
Q Consensus 174 -------------~~-------------~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~-~~----------- 214 (298)
|. ....|++.+.+++++++ ++.|++|+-.+.....+++. |.
T Consensus 233 stfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~ 312 (1080)
T KOG1408|consen 233 STFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQP 312 (1080)
T ss_pred ceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccc
Confidence 00 01123444555666544 58888888776555544431 10
Q ss_pred C----------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC----cceEeecccccceeEEEECC------------
Q 022387 215 N----------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ------------ 268 (298)
Q Consensus 215 ~----------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~----~~~~~~~~H~~~V~~l~fsp------------ 268 (298)
+ .-.++++-+++....|.+ -..|-.++|||+.. .+...+..|...|+.|.--|
T Consensus 313 ~~~~s~~~~a~fPD~IA~~Fdet~~klsc-VYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp 391 (1080)
T KOG1408|consen 313 EPKNSESSPAIFPDAIACQFDETTDKLSC-VYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP 391 (1080)
T ss_pred cccccccCcccCCceeEEEecCCCceEEE-EEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC
Confidence 0 012566667766666665 57789999999874 23446778998888886544
Q ss_pred CCCEEEEEeCCCCEEEEEECCCC
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
.+ -|.|+|.|++ |||||+..+
T Consensus 392 ~~-cF~TCSsD~T-IRlW~l~~c 412 (1080)
T KOG1408|consen 392 RG-CFTTCSSDGT-IRLWDLAFC 412 (1080)
T ss_pred cc-ceeEecCCCc-EEEeecccc
Confidence 22 4999999999 999999874
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.53 E-value=5.6e-13 Score=116.79 Aligned_cols=194 Identities=10% Similarity=0.160 Sum_probs=141.7
Q ss_pred CCCCCCeEEEEEcC--CCCEEEEEcC-CeEEEEEcCCCceEEE-Eeee-cCCceEEEEEecCC-CEEEEEeCCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQ--DHGCFAAGTD-HGFRIYNCDPFREIFR-RDFE-RGGGIGVVEMLFRC-NILALVGGGPDPQYPL 155 (298)
Q Consensus 82 ~~~~~~V~~v~fs~--dg~~lasgs~-~gi~vw~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 155 (298)
..|...=++++||| .| .|++|.. ++|.+|...++.+.+- +.|. |...+.-++|++.. ..++.++ .|
T Consensus 208 ~ghk~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS-------~D 279 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS-------CD 279 (440)
T ss_pred cccCccceeeeccccccc-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee-------cC
Confidence 45667789999999 33 3777766 7799998877665432 2232 56677777787654 4455555 78
Q ss_pred CeEEEEeCCCC---cEEEEeecCCceEEEEEeCCeEEE--EE-CCeEEEEEcCC---CeEEEEEeccCCCcceEEEEeCC
Q 022387 156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIV--VL-EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 156 ~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~l~v--~~-~~~I~iwd~~~---~~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
++|+|||++.+ .++..-.+.+.|..+.|+.+.-++ +. +|+++|||+++ ++++.+|+-|..++.++.+++..
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc
Confidence 99999999987 466666677899999999764433 33 38999999975 46778999999999999999887
Q ss_pred CCeEEEEecCCCceEEEEEcCCcc-----------------eEeecccc--cceeEEEECCC-CCEEEEEeCCCCEEEEE
Q 022387 227 GSLVLVCPGLQKGQVRVEHYASKR-----------------TKFIMAHD--SRIACFALTQD-GQLLATSSTKGTLVRIF 286 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~~~-----------------~~~~~~H~--~~V~~l~fspd-g~~lAt~S~Dgt~IrIW 286 (298)
+..+.| ++.|..|.+||+.... ...+--|. ..|..|.|++. .-+|++.+.||- .||
T Consensus 360 ~s~iaa--sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf--nVf 435 (440)
T KOG0302|consen 360 DSVIAA--SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF--NVF 435 (440)
T ss_pred CceEEe--ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce--eEE
Confidence 655544 7888999999976321 11344564 46999999986 467888888984 666
Q ss_pred E
Q 022387 287 N 287 (298)
Q Consensus 287 d 287 (298)
.
T Consensus 436 k 436 (440)
T KOG0302|consen 436 K 436 (440)
T ss_pred E
Confidence 4
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=4.8e-12 Score=118.03 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=144.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
......|-+++|++.|+++.+|..+.|.-||+.+.+..+.... -.+.+-.++..+....+++.+ .||.+.++
T Consensus 66 g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~Igc-------ddGvl~~~ 137 (691)
T KOG2048|consen 66 GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIGC-------DDGVLYDF 137 (691)
T ss_pred cCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEeec-------CCceEEEE
Confidence 3445689999999888888788778888999999988777764 255666667777777777766 57877788
Q ss_pred eCCCCcEEEEeec---CCceEEEEEeCCeE--EEEE-CCeEEEEEcCCCeEEEEEe--c---cC-CCc--ceEEEEeCCC
Q 022387 162 DDHQSRCIGELSF---RSEVRSVKLRRDRI--IVVL-EQKIFVYNFADLKLLHQIE--T---IA-NPK--GLCAVSQGVG 227 (298)
Q Consensus 162 D~~~~~~~~~~~~---~~~v~~v~~~~~~l--~v~~-~~~I~iwd~~~~~~i~~~~--~---~~-~~~--~~~~~s~~~d 227 (298)
+...+.......+ .++|+++.|+++.. +.++ |+.|++||...+..++.+. . .. .+. ..+.+-.+
T Consensus 138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-- 215 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-- 215 (691)
T ss_pred ecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--
Confidence 8877776655544 35899999999765 4433 5789999998777666221 1 11 222 22333322
Q ss_pred CeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 228 SLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
..|| +|...|+|.+||.....+. .++.|.+.|.||+-++++.++.+++.|+. |--+...++
T Consensus 216 -~tI~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~-ii~~~~~~~ 277 (691)
T KOG2048|consen 216 -STIA-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK-IIQYSLTTN 277 (691)
T ss_pred -CcEE-EecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc-eEEEEecCC
Confidence 4555 4999999999999887654 78999999999999999999999999999 444444443
No 149
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=2e-12 Score=110.70 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=132.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
...+...|..|.|+|.+..|++++-|| +++|+........... |++++ +++.|.....++.++ .|+.|+
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~pl--L~c~F~d~~~~~~G~------~dg~vr 78 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPL--LDCAFADESTIVTGG------LDGQVR 78 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCce--eeeeccCCceEEEec------cCceEE
Confidence 344556899999999887777766655 8999998875433333 35544 444554444444443 579999
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeC--CeEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
.+|+.++.....-.+...|.++...+ +.++.+ .+++|++||.++....-++.... .+.++.+ .+ ..|++ |.
T Consensus 79 ~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g--~~LvV-g~ 152 (323)
T KOG1036|consen 79 RYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SG--NRLVV-GT 152 (323)
T ss_pred EEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cC--CEEEE-ee
Confidence 99999998877778888999999874 333333 37899999998755544444332 2333333 32 44443 88
Q ss_pred CCceEEEEEcCCcceEe---ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 237 QKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~---~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
.+-.|.+||+.+..... -..-+-.++||++-|++.-+|.+|-||. |-+=.+..
T Consensus 153 ~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~ 208 (323)
T KOG1036|consen 153 SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDD 208 (323)
T ss_pred cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCC
Confidence 89999999987644321 1223346999999999999999999998 76654443
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=4.2e-13 Score=113.98 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=141.6
Q ss_pred ccCCCCCCeEEEEEcC-CCCEEEEEcC--------CeEEEEEcCCC---------ceEEEEeeecCCceEEEEEecCCCE
Q 022387 80 TSSSPPPTLLHISFNQ-DHGCFAAGTD--------HGFRIYNCDPF---------REIFRRDFERGGGIGVVEMLFRCNI 141 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~-dg~~lasgs~--------~gi~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (298)
....+.+.|..++=+| |.+.|++.-. .++.||.+... +.+....-.+.+.+.++.|.+++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 3355667899999998 5566776433 23669987432 1222222113567889999998888
Q ss_pred EEEEeCCCCCCCCCCeEEEEeCCCCcE-EEEeec------CCceEEEEEeC----CeEEEEECCeEEEEEcCCCeEEEEE
Q 022387 142 LALVGGGPDPQYPLNKVMIWDDHQSRC-IGELSF------RSEVRSVKLRR----DRIIVVLEQKIFVYNFADLKLLHQI 210 (298)
Q Consensus 142 ~~~~~~~~~~~~~d~~v~iWD~~~~~~-~~~~~~------~~~v~~v~~~~----~~l~v~~~~~I~iwd~~~~~~i~~~ 210 (298)
++... |+.|.+|++..+.. +.++.. ....++-.|++ +.+++..++++..||+++++....+
T Consensus 138 lasm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 138 LASMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred eEEec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence 87765 68899999988765 333322 22445555655 3566666789999999999887777
Q ss_pred ec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEE
Q 022387 211 ET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIF 286 (298)
Q Consensus 211 ~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIW 286 (298)
.. |.+-+..+.|++ +.+.+.++|+.||.|+|||.... ++.++.+|.--|++|.|+|. .+++.|||.|.. |.+|
T Consensus 210 ~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls 286 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS 286 (370)
T ss_pred hhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence 54 544444445544 44555557999999999998753 56789999999999999987 489999999999 9999
Q ss_pred ECCC
Q 022387 287 NTLD 290 (298)
Q Consensus 287 d~~t 290 (298)
-..+
T Consensus 287 ca~s 290 (370)
T KOG1007|consen 287 CASS 290 (370)
T ss_pred eccc
Confidence 7653
No 151
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.51 E-value=3.1e-12 Score=115.82 Aligned_cols=196 Identities=16% Similarity=0.243 Sum_probs=147.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe---------EEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCC
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG---------FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGP 149 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g---------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 149 (298)
...|+..|.|++.+||-..+|+|-..| +|+||..+...+...-+ -+.++.+++++. .+..+..+..+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-f~~GV~~vaFsk~~~G~~l~~vD~s- 177 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-FDRGVTCVAFSKINGGSLLCAVDDS- 177 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecc-ccccceeeeecccCCCceEEEecCC-
Confidence 367888999999999999999875422 78999777666555543 256788888864 34555555544
Q ss_pred CCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEeC---CeEEEEECCeEEEEEcCCCeEEEEEe---ccCCCcceEEE
Q 022387 150 DPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLRR---DRIIVVLEQKIFVYNFADLKLLHQIE---TIANPKGLCAV 222 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~~---~~l~v~~~~~I~iwd~~~~~~i~~~~---~~~~~~~~~~~ 222 (298)
.+.-+.+||++.+....+++... -|....|+| +.+..++.+.+.+|+.+.+.+.++.. .++. ..+.++
T Consensus 178 ----~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v 252 (626)
T KOG2106|consen 178 ----NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCV 252 (626)
T ss_pred ----CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEE
Confidence 45778999999988777776554 567788987 45566667999999998877666543 2333 445556
Q ss_pred EeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
.+.+++..+ +|..+|.|.||+.....+. ...+|.+.|.+++.-.+|.+|- |+.|+. |-.||
T Consensus 253 ~F~engdvi--TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk-i~~Wd 314 (626)
T KOG2106|consen 253 TFLENGDVI--TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK-IILWD 314 (626)
T ss_pred EEcCCCCEE--eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce-EEecc
Confidence 666666766 4999999999999776543 4459999999999999998776 999999 99999
No 152
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.50 E-value=1.3e-12 Score=111.16 Aligned_cols=201 Identities=10% Similarity=0.108 Sum_probs=133.7
Q ss_pred CCCCCCeEEEEEcCCCC-----EEEEEcCCeEEEEEcCCCc--eEEEEeee------cCCceEEEEEe-cCCCEEEEEeC
Q 022387 82 SSPPPTLLHISFNQDHG-----CFAAGTDHGFRIYNCDPFR--EIFRRDFE------RGGGIGVVEML-FRCNILALVGG 147 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~-----~lasgs~~gi~vw~~~~~~--~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~ 147 (298)
..|+-+++.+.|.||.+ +||+ +.|-+|+|.+.... ......+. +...+....|. -+++++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS- 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS- 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec-
Confidence 46777999999999873 4555 46778999886321 11111110 12233333442 2466666666
Q ss_pred CCCCCCCCCeEEEEeCCCCc----EEEEeecCCceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEEEEeccCC-Ccc
Q 022387 148 GPDPQYPLNKVMIWDDHQSR----CIGELSFRSEVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLHQIETIAN-PKG 218 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~----~~~~~~~~~~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~-~~~ 218 (298)
-|-+..|||++++. ..+-+.|..+|..++|.. +.++.+ .+|.||+||++..+--..+..... ...
T Consensus 171 ------iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 171 ------IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred ------ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 78999999999973 234467788999999976 334433 479999999986543222222222 223
Q ss_pred eEEEEeCC-CCeEEEEecCCCceEEEEEcCC--cceEeecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCCC
Q 022387 219 LCAVSQGV-GSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 219 ~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg 291 (298)
...+++.. |-.++|+-+.....|.|-|+.. .++..+++|.+.|+.|+|.|. ...|+|+++|.. +-|||+...
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~ 320 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQM 320 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccc
Confidence 44455432 3366665456666788877764 356689999999999999986 689999998887 999998753
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.50 E-value=1.6e-13 Score=124.10 Aligned_cols=162 Identities=21% Similarity=0.271 Sum_probs=110.9
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC---cEEEEeec---CCceEEEEEeCC--eEEEEEC-CeE
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSF---RSEVRSVKLRRD--RIIVVLE-QKI 196 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~---~~~~~~~~---~~~v~~v~~~~~--~l~v~~~-~~I 196 (298)
|+.-+..+..+.....+.+++ .+.|||||+... ..+..+.. ..-+.++.+.++ .|++++. .++
T Consensus 418 HGEvVcAvtIS~~trhVyTgG--------kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG--------KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred cCcEEEEEEecCCcceeEecC--------CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 555556666665555555544 478999998653 22333332 223556666554 4444443 699
Q ss_pred EEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEE
Q 022387 197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLAT 275 (298)
Q Consensus 197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt 275 (298)
.|||+....+-.+.+.......+.++..++|..+.+ ++-.||.|.|||+.+..+ ..|++|...+.||.+++||..|=|
T Consensus 490 siWDLAapTprikaeltssapaCyALa~spDakvcF-sccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCF-SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred eeeeccCCCcchhhhcCCcchhhhhhhcCCccceee-eeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec
Confidence 999997655422222222222333444444435444 689999999999988764 589999999999999999999999
Q ss_pred EeCCCCEEEEEECCCCcEEEec
Q 022387 276 SSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 276 ~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|+-|.+ ||-||+++|+++.++
T Consensus 569 GGlDnt-vRcWDlregrqlqqh 589 (705)
T KOG0639|consen 569 GGLDNT-VRCWDLREGRQLQQH 589 (705)
T ss_pred CCCccc-eeehhhhhhhhhhhh
Confidence 999999 999999999987664
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.49 E-value=3e-12 Score=115.78 Aligned_cols=178 Identities=17% Similarity=0.226 Sum_probs=131.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~ 159 (298)
..|...|++|.++-...|||+++.+| |.|-.+.+...........+..+..+.++..... |.+++ ++|.|.
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as-------d~G~Vt 190 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS-------DKGAVT 190 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec-------cCCeEE
Confidence 56778999999999999999999977 7788887766543333211345567777665554 44444 679999
Q ss_pred EEeCCCCcEEEEee--cCCceEEEEEeCC--eEEE--EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 160 IWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIV--VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 160 iWD~~~~~~~~~~~--~~~~v~~v~~~~~--~l~v--~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+||+.....+..+. |..+...++|++. .+++ +.|.+|.+||++..+...++.- ..|...++|..++ .+|++
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G--~~L~a 267 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECG--TYLCA 267 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCc--eEEEe
Confidence 99998877765543 3457777888763 2332 3478999999987776665543 4566677776654 88885
Q ss_pred ecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCC
Q 022387 234 PGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDG 270 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg 270 (298)
|+..|.|..||+... ++.++.+|+..|++|+|-|.-
T Consensus 268 -G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 -GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred -ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999998765 467899999999999998764
No 155
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.48 E-value=2.5e-12 Score=109.60 Aligned_cols=161 Identities=16% Similarity=0.227 Sum_probs=111.8
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc------------EEEEeecC----CceEEEEEeC--Ce
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR------------CIGELSFR----SEVRSVKLRR--DR 187 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~------------~~~~~~~~----~~v~~v~~~~--~~ 187 (298)
|.+++..+.+......+.+.+| .|+.|.+||+++-. ++...++. -.|..+.|-| ..
T Consensus 42 HgGsvNsL~id~tegrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred CCCccceeeeccccceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 4566666666543333333332 57999999987632 11111221 2456666644 45
Q ss_pred EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC-CeEEEEecCCCceEEEEEcCCcce-EeecccccceeE
Q 022387 188 IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC 263 (298)
Q Consensus 188 l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d-~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~ 263 (298)
++... +.++++||..+.+....|+-. ..+...++++-.. +.++|+ |..+-.|++-|+..+.. .++.+|...|-+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~-gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAA-GTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEE-ecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 55543 689999999999888877643 3345555555332 477774 99999999999988765 599999999999
Q ss_pred EEECCCC-CEEEEEeCCCCEEEEEECCCC-cEEE
Q 022387 264 FALTQDG-QLLATSSTKGTLVRIFNTLDG-TLLQ 295 (298)
Q Consensus 264 l~fspdg-~~lAt~S~Dgt~IrIWd~~tg-~~l~ 295 (298)
|.|||.. -.|||||.||. ||+||++.. .|+.
T Consensus 194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~ 226 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFR 226 (397)
T ss_pred EEeccCceeEEEecCCCce-EEEEEeecccceeE
Confidence 9999975 57899999999 999999865 4443
No 156
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.48 E-value=1.6e-12 Score=115.06 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=86.3
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE---EEEee-cCCceEEEEEeCC--eEEEEE-CCeEEE
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-FRSEVRSVKLRRD--RIIVVL-EQKIFV 198 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~---~~~~~-~~~~v~~v~~~~~--~l~v~~-~~~I~i 198 (298)
|...+-.+.+++++.++|.++ .|.+..+|++..... ..++. +..+|..+.|+|+ .+++|. +..+++
T Consensus 223 htdEVWfl~FS~nGkyLAsaS-------kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASAS-------KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred CCCcEEEEEEcCCCeeEeecc-------CCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 567788888899999999988 789999999765432 34444 4568999999985 444443 578999
Q ss_pred EEcCCCeEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc
Q 022387 199 YNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (298)
Q Consensus 199 wd~~~~~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~ 250 (298)
||..++.+.+.+... ...+.+|+..||+ ..+++ |+.|+.|..|+.+...
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~-Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVT-GSPDRTIIMWDLDGNI 345 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCC--ceeEe-cCCCCcEEEecCCcch
Confidence 999999998887653 4455566666654 77774 9999999999976543
No 157
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.47 E-value=1.4e-12 Score=118.25 Aligned_cols=195 Identities=12% Similarity=0.174 Sum_probs=127.5
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCce---EEEEeeecCC--ceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFRE---IFRRDFERGG--GIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
.+|...++|.+|+|+.+ .+.+.+. .++|||++...+. ++........ .+..+.|..++..+|.+. .
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc-------~ 337 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC-------L 337 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc-------c
Confidence 56778999999999764 4555555 5599999976542 2222211122 234555666677666555 6
Q ss_pred CCeEEEEeCCCCcE--EEE--eecC--CceEEEEEeCCeEEEE---ECCeEEEEEcCCCe-EEEEEeccC--CCcceEEE
Q 022387 155 LNKVMIWDDHQSRC--IGE--LSFR--SEVRSVKLRRDRIIVV---LEQKIFVYNFADLK-LLHQIETIA--NPKGLCAV 222 (298)
Q Consensus 155 d~~v~iWD~~~~~~--~~~--~~~~--~~v~~v~~~~~~l~v~---~~~~I~iwd~~~~~-~i~~~~~~~--~~~~~~~~ 222 (298)
||.|.+||...... ... -.|. +.|.+|.|+.+.-.++ .++++++||+++.+ ++.+..+-. .+..-|+|
T Consensus 338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence 79999999754321 111 1222 3799999998654444 36899999998754 444444333 23445667
Q ss_pred EeCCCCeEEEEecCC------CceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 223 SQGVGSLVLVCPGLQ------KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 223 s~~~d~~~la~sGs~------dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+++. .+|+ +|.. .|.+.+++..+ ..+..+...+..|..+.|+|.-+.|..|+.||+ ++|+=
T Consensus 418 SPd~--kli~-TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~-~~vyY 485 (641)
T KOG0772|consen 418 SPDD--KLIL-TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT-AHVYY 485 (641)
T ss_pred CCCc--eEEE-ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc-eEEEE
Confidence 6654 6666 4543 67788877654 445566666788999999999877777888999 88863
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=6.7e-13 Score=121.45 Aligned_cols=208 Identities=13% Similarity=0.189 Sum_probs=136.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce--------EEEEee-ecCCceEEEEEecCCCEEEEEeCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--------IFRRDF-ERGGGIGVVEMLFRCNILALVGGGP 149 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
..+.|+.+|.|+++.+++..+.+|+.|| |+.|++.+..- ...-.+ .|...+..+.++.....++.++
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs--- 415 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS--- 415 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec---
Confidence 3478999999999999999999999866 88996632110 011111 1455566666776666777776
Q ss_pred CCCCCCCeEEEEeCCCCcEEEEeec---CCceEEEEEeCCeE-EEEECCeEEEEEcCCCeEEEEEeccC---CC-----c
Q 022387 150 DPQYPLNKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRI-IVVLEQKIFVYNFADLKLLHQIETIA---NP-----K 217 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~~l-~v~~~~~I~iwd~~~~~~i~~~~~~~---~~-----~ 217 (298)
.|++|++|+...... ..+.. +.--..+++-.-.+ ....+...+.+.+.+++....+.... .+ .
T Consensus 416 ----~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 416 ----SDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred ----CCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 789999999877655 22221 22334455543332 22234455555554444333332211 11 1
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
....+-.++.+.+.. ++..|+.|+++|..... +....+|...|+++++.|+|.+|++++.|+. |++|.+....|+.+
T Consensus 491 ~in~vVs~~~~~~~~-~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~e 568 (577)
T KOG0642|consen 491 QINKVVSHPTADITF-TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLE 568 (577)
T ss_pred ccceEEecCCCCeeE-ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeec
Confidence 122222333334444 58999999998877654 5588899999999999999999999999999 99999988887765
Q ss_pred c
Q 022387 297 G 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 569 s 569 (577)
T KOG0642|consen 569 S 569 (577)
T ss_pred c
Confidence 4
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.9e-12 Score=115.95 Aligned_cols=191 Identities=14% Similarity=0.244 Sum_probs=136.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
..+.....++|+++||..+..| |.|....+.+.+...++ ++.+..++++.++..+.+++ .+|.|.+||++
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk~l~~~~-------~~GeV~v~nl~ 374 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSKELLASG-------GTGEVYVWNLR 374 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCcEEEEEc-------CCceEEEEecC
Confidence 3677788899999999999977 56888888888877776 78888888888887776666 46899999999
Q ss_pred CCcEEEEeecCCce----EEEEEeCCeEEEEEC-CeEEEEEcC------CCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 165 QSRCIGELSFRSEV----RSVKLRRDRIIVVLE-QKIFVYNFA------DLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 165 ~~~~~~~~~~~~~v----~~v~~~~~~l~v~~~-~~I~iwd~~------~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
...+++.+.-.+.| .|++.++..++++++ |-|.|||.. +.+++.++.--...+..+.|++ |.++||+
T Consensus 375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~--d~qiLAi 452 (514)
T KOG2055|consen 375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH--DAQILAI 452 (514)
T ss_pred CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc--chhhhhh
Confidence 99999888755433 344456677777765 899999964 2444444432222344455554 5588886
Q ss_pred ecCC--CceEEEEEcCCcceE-eec---ccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 234 PGLQ--KGQVRVEHYASKRTK-FIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 234 sGs~--dg~v~i~~~~~~~~~-~~~---~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+|. +..+++-.+-.-.+. .+. .--+.|+||+|||.|-+||.|-++|. ++||.+.
T Consensus 453 -aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~ 512 (514)
T KOG2055|consen 453 -ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH 512 (514)
T ss_pred -hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence 443 345666443322211 222 22356999999999999999999999 9999853
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.46 E-value=2.7e-12 Score=110.61 Aligned_cols=184 Identities=18% Similarity=0.182 Sum_probs=133.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEc-CCCceEEEE------eeecCCceEEEEEecCCC-EEEEEeCCCCCCCCCCeE
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNC-DPFREIFRR------DFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~v 158 (298)
.-.+++|+|||++|.+|-...|+|||+ .+++..-.. ++...+-+.+.++++... .++..+ --+.+
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-------Y~q~~ 232 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-------YGQRV 232 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec-------cccee
Confidence 456899999999999999999999998 444322111 110123344444554433 445544 23567
Q ss_pred EEEeCCCCcEEEEee-cCCceEEEEEeC--CeEEEEE--CCeEEEEEcCC-CeEEEEEeccCC-CcceEEEEeCCCCeEE
Q 022387 159 MIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL--EQKIFVYNFAD-LKLLHQIETIAN-PKGLCAVSQGVGSLVL 231 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~-~~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~-~~~i~~~~~~~~-~~~~~~~s~~~d~~~l 231 (298)
-|+....+..+..+- +.+-|+.+.|++ +.+++.. +.+|.+||++. ..++..+..|.. ...-+-|.-++++++|
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCcee
Confidence 777766666655554 445899999986 4566654 47999999975 456667776654 5667888888899999
Q ss_pred EEecCCCceEEEEEcCC-c-ceEeecccccceeEEEECCCCCEEEEEeC
Q 022387 232 VCPGLQKGQVRVEHYAS-K-RTKFIMAHDSRIACFALTQDGQLLATSST 278 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~-~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~ 278 (298)
| +|+.+|.|++||++. . .+..+..|+..|+.++++|--.++||+|-
T Consensus 313 a-sG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 313 A-SGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred e-ccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 9 699999999999986 3 36678889999999999999999999973
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.7e-13 Score=122.22 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=143.6
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCce--EEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
+.-.|...|+.+.|+.+|+|||+-.. .++.|..+..... -|.+. .+.+..+.+.+....+++++
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks---kG~vq~v~FHPs~p~lfVaT------- 585 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS---KGLVQRVKFHPSKPYLFVAT------- 585 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc---CCceeEEEecCCCceEEEEe-------
Confidence 33456779999999999999998765 4466776654332 22222 56677777777777777776
Q ss_pred CCCeEEEEeCCCCcEEEEeecC-CceEEEEEeC--CeEEEEE-CCeEEEEEc-CCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVL-EQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~-~~~I~iwd~-~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
.+.|+|||+..+..+.++-.. ..|..++.|+ +.+++++ ++.+..||+ ...++.+++.-|...+..++++...
T Consensus 586 -q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-- 662 (733)
T KOG0650|consen 586 -QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-- 662 (733)
T ss_pred -ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc--
Confidence 477999999987766655433 4577788887 6666665 689999999 4567778888888877777777654
Q ss_pred eEEEEecCCCceEEEEE-c-----CCc----ceEeecccccc----eeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 229 LVLVCPGLQKGQVRVEH-Y-----ASK----RTKFIMAHDSR----IACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~-~-----~~~----~~~~~~~H~~~----V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
.++| +|+.||.+.|+- + ... +++.+++|... |-.+.|+|...+|.|++.||+ ||+|
T Consensus 663 PLfa-s~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t-irlf 732 (733)
T KOG0650|consen 663 PLFA-SGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT-IRLF 732 (733)
T ss_pred ceee-eecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCce-EEee
Confidence 7777 699999999932 1 122 24578999876 999999999999999999999 9998
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.44 E-value=1.2e-12 Score=112.96 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=136.9
Q ss_pred CCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 82 SSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
++|...|+.|.|.|+. +++++++.|. +|+||+++..++...--. |...+..+.++.+++.++.+| .|..
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG-------mDhs 204 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG-------MDHS 204 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC-------Ccce
Confidence 6788899999999976 6888998755 899999999876654322 667788888888888776666 7899
Q ss_pred EEEEeCCCCcEEEEe----e---------cC----------------CceEEEEEeCCeEEE-EECCeEEEEEcCC-Ce-
Q 022387 158 VMIWDDHQSRCIGEL----S---------FR----------------SEVRSVKLRRDRIIV-VLEQKIFVYNFAD-LK- 205 (298)
Q Consensus 158 v~iWD~~~~~~~~~~----~---------~~----------------~~v~~v~~~~~~l~v-~~~~~I~iwd~~~-~~- 205 (298)
+++|++...+....+ . +. ..|-|+.|-.++++. ..++.|.+|.... .+
T Consensus 205 lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhh
Confidence 999998743221111 0 10 011222222333433 3468999998732 11
Q ss_pred ------------EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce---Eeeccc--ccceeEEEECC
Q 022387 206 ------------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAH--DSRIACFALTQ 268 (298)
Q Consensus 206 ------------~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~---~~~~~H--~~~V~~l~fsp 268 (298)
.+.+++-....+.-+.|++++-+..||+ |...|.|.+||++.... .++..+ .+.|+..+||.
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~-gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~ 363 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL-GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR 363 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh-ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc
Confidence 1223333333345678888888888986 99999999999986543 234333 45799999999
Q ss_pred CCCEEEEEeCCCCEEEEEEC
Q 022387 269 DGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~ 288 (298)
||.+|+...+|++ |--||.
T Consensus 364 dgs~lv~vcdd~~-Vwrwdr 382 (385)
T KOG1034|consen 364 DGSILVLVCDDGT-VWRWDR 382 (385)
T ss_pred cCcEEEEEeCCCc-EEEEEe
Confidence 9999999999999 766764
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=2.1e-10 Score=103.43 Aligned_cols=205 Identities=18% Similarity=0.263 Sum_probs=146.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCc-eEEEEeeecCCceEEEEE-ecCCCEEEEEeCCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFR-EIFRRDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 156 (298)
....+...+.++.|.+++..++.++. ..+.+|+..... ........+...+..+.. ..+....+...+. .|+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS-----LDG 134 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCC-----CCc
Confidence 34567789999999999999998885 558899988775 333332201113444444 3334423333222 478
Q ss_pred eEEEEeCCC-CcEEEEeecC-CceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 157 KVMIWDDHQ-SRCIGELSFR-SEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 157 ~v~iWD~~~-~~~~~~~~~~-~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.+++||... ......+..+ ..|..+.|+++. ++++. ++.+++|++...+.+..+..|...+..+++++ ++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 212 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP--DGGL 212 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC--Ccce
Confidence 999999998 5555555544 578889998765 33333 68999999998888888888878787888774 4444
Q ss_pred EEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 231 LVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
++.+++.|+.|.+|+....... .+.+|...+ ...|+|++.++++++.|+. +++|++.....
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~ 275 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSS 275 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCc
Confidence 4444699999999987755443 488888886 4489999999999999999 99999987654
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.6e-11 Score=113.76 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=124.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
.+...|.+.+|||||++||..+. + .+.+|++.+++......+ .+......|+++++.++++.. .++.+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~--~g~~~~~~wSPDG~~La~~~~------~~g~~ 272 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF--RGHNGAPAFSPDGSRLAFASS------KDGVL 272 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC--CCccCceeECCCCCEEEEEEe------cCCcE
Confidence 34567999999999999997764 2 378999987654333333 333446788889988887653 23444
Q ss_pred --EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 159 --MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 159 --~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
.+||+.+++..........+....|+++ .++...+ +...||++.. ......+ .+.. .... +++|+..+
T Consensus 273 ~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~--~SpDG~~i 347 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQ--ISADGKTL 347 (429)
T ss_pred EEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCcc--CCCCCCEE
Confidence 4557766665433333445677888876 3444443 6777777632 2222222 3222 2233 45566777
Q ss_pred EEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC--CCcEEEec
Q 022387 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEG 297 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~--tg~~l~~~ 297 (298)
++. +.++ +.+||..+.....+..+ .....++|+|||++|+.++.++. +++|++. +|++++++
T Consensus 348 a~~-~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 348 VMI-NGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARL 411 (429)
T ss_pred EEE-cCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEc
Confidence 763 3354 44478776654444322 23467889999999999999999 8888863 57666543
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=1.9e-11 Score=105.52 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=130.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCC------------ceEEEEeeecCCceEEEEEe-------cCCCEEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF------------REIFRRDFERGGGIGVVEML-------FRCNILAL 144 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~------------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 144 (298)
.+-...+.|+|||..|.+-++ +++.+|++... .............+...+|- ++.++++.
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 345667999999999888887 66889987321 11112221112222222321 34556666
Q ss_pred EeCCCCCCCCCCeEEEEeCCCCcEEEEee---cC---CceEEEEEeCC--eEEEEECCeEEEEEc-CCCeEEEEEe--cc
Q 022387 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELS---FR---SEVRSVKLRRD--RIIVVLEQKIFVYNF-ADLKLLHQIE--TI 213 (298)
Q Consensus 145 ~~~~~~~~~~d~~v~iWD~~~~~~~~~~~---~~---~~v~~v~~~~~--~l~v~~~~~I~iwd~-~~~~~i~~~~--~~ 213 (298)
.+ .+.-|++||.-+|+....+. +- ....++.|+++ .+++.-...|+++|+ +.+.-...+. .+
T Consensus 129 ss-------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 129 SS-------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred cc-------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc
Confidence 55 78899999999987655443 22 24577899886 455555689999999 5443322222 12
Q ss_pred -----CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 214 -----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 214 -----~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
...+.+++|+|.. ...+|+ |+....+-|+.... +++..+-+|.+.|+.++|.+||..|.+|+...-.|..||
T Consensus 202 ~k~gq~giisc~a~sP~~-~~~~a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMD-SKTLAV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred ccccccceeeeeeccCCC-Ccceee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 1223344666543 247775 99988998966654 456688899999999999999999999976333499999
Q ss_pred CCCC
Q 022387 288 TLDG 291 (298)
Q Consensus 288 ~~tg 291 (298)
++.-
T Consensus 280 iR~~ 283 (406)
T KOG2919|consen 280 IRYS 283 (406)
T ss_pred ehhc
Confidence 9864
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.42 E-value=2.1e-10 Score=103.72 Aligned_cols=200 Identities=10% Similarity=0.057 Sum_probs=125.2
Q ss_pred CeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceE--EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
....++|+|+|++|++++. +.+.+|++++.+.. ....+.+......+.+.+++..++++.. .++.|.+||
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d 154 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFT 154 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEE
Confidence 4568999999999888764 55889998753321 1111111223344556777777766653 358899999
Q ss_pred CCCCcEEE-------EeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCC--C--eEEEEEeccC----CCcceEEEE
Q 022387 163 DHQSRCIG-------ELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFAD--L--KLLHQIETIA----NPKGLCAVS 223 (298)
Q Consensus 163 ~~~~~~~~-------~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~--~--~~i~~~~~~~----~~~~~~~~s 223 (298)
+.+...+. .+........+.|+++ .++++. +++|.+|++.. + +.+.++.... .+.....+.
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 97643221 1222334567888876 565665 48999999963 2 3444443321 111222344
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccc---cceeEEEECCCCCEEEEEeC-CCCEEEEEECC--CCcE
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD---SRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTL 293 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~---~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~--tg~~ 293 (298)
.++++.++.++...++.|.+|++.... ...+.+|. ...+.++|+|||++|+++.. +++ |.||++. +|.+
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~-v~v~~~~~~~g~l 310 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHH-ISVYEIDGETGLL 310 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCc-EEEEEEcCCCCcE
Confidence 455667777656678899999885432 22333332 25678999999999998876 888 9999874 4543
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=2.7e-10 Score=102.81 Aligned_cols=198 Identities=20% Similarity=0.323 Sum_probs=144.3
Q ss_pred CeEEEEE-cCCCC-EEEEEcC-Ce-EEEEEcCC-CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 87 TLLHISF-NQDHG-CFAAGTD-HG-FRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 87 ~V~~v~f-s~dg~-~lasgs~-~g-i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
.+..+.+ ++++. +++..+. ++ +.+|+... ......... |...+..+.+.+....++..+ . .++.+++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-~-----~~~~~~~~ 183 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGS-S-----LDGTIKLW 183 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecC-C-----CCCceEEE
Confidence 6777777 88888 5554343 54 77999987 444333333 566777777777777554443 1 27999999
Q ss_pred eCCCCcEEEEeec-CCceEEEEEeCCe--EEEE--ECCeEEEEEcCCCeEEE-EEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 162 DDHQSRCIGELSF-RSEVRSVKLRRDR--IIVV--LEQKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 162 D~~~~~~~~~~~~-~~~v~~v~~~~~~--l~v~--~~~~I~iwd~~~~~~i~-~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
+...+..+..+.. ...|.++.++++. +++. .++.|++||...++.+. .+..|.... ...++++. .+++ ++
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~ 259 (466)
T COG2319 184 DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG--SLLA-SG 259 (466)
T ss_pred EcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC--CEEE-Ee
Confidence 9998777777765 5689999998764 3333 35799999998777777 577666654 44555554 5565 58
Q ss_pred CCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 236 LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 236 s~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+.|+.+++|+..... ...+..|...|.++.|+|++..+++++.|+. +++||+.++.....
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~ 321 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSS 321 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEE
Confidence 999999999987544 3444688999999999999999999999987 99999998876543
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1e-11 Score=107.69 Aligned_cols=186 Identities=15% Similarity=0.145 Sum_probs=129.2
Q ss_pred CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387 98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (298)
Q Consensus 98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~ 174 (298)
+.+|+|-. +.+++||..+++.+..... +...+..+.+.. .++.+..++ .||+||+||++.......+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~s-------sDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCS-------SDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEec-------cCCeEEEEEeecchhhhheec
Confidence 45777755 6699999999765544443 244444555543 455566655 689999999998765544443
Q ss_pred C--C--ceEEEEEe-CCeEEEEE-C-----CeEEEEEcCCCeE-EEEE-eccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387 175 R--S--EVRSVKLR-RDRIIVVL-E-----QKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (298)
Q Consensus 175 ~--~--~v~~v~~~-~~~l~v~~-~-----~~I~iwd~~~~~~-i~~~-~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v 241 (298)
. + +..+++.+ ...++.++ . =.|.+||++..+. ++.+ ..|...+..+.|+|... .+|+ +||.||.|
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-nlLl-SGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-NLLL-SGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-CeEE-eecccceE
Confidence 2 2 55666665 34444443 2 2799999987655 5555 45777788888877542 4555 69999999
Q ss_pred EEEEcCCcc----eEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE
Q 022387 242 RVEHYASKR----TKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 242 ~i~~~~~~~----~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.++|.+... +...-.|.+.|.++.|..++ +.|-+-+...+ ..+|+++.|.+.
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~ 247 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEE 247 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChh
Confidence 999987643 33444577889999999776 56888889999 999999998753
No 169
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.4e-11 Score=106.12 Aligned_cols=202 Identities=15% Similarity=0.205 Sum_probs=136.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
...+|..++.. ||.++++-+.+-+++|+.+..- .+..+.. ...+..+.-......++..||.+ .-+.++
T Consensus 104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke----~~n~lk 176 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKE----NINELK 176 (412)
T ss_pred ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchh----ccccee
Confidence 33456555533 5666665555568899887321 2222222 34455555444444444434332 226799
Q ss_pred EEeCCCCcEEEEee--------cCCc--eEEEEEeC----CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEE
Q 022387 160 IWDDHQSRCIGELS--------FRSE--VRSVKLRR----DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 160 iWD~~~~~~~~~~~--------~~~~--v~~v~~~~----~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s 223 (298)
|||++..+.+.+-+ ..-+ +..+.|-+ ..++.++. +.+++||.+. -+++.+|.-..+++.++..-
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeec
Confidence 99999876554422 1112 34456643 35555554 8999999964 45777777777777777776
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+++ .++. .|...|.+..+|...+.+. .+++-++.|++|-.+|.+++||++|-|+. +||+|+++.++++.
T Consensus 257 p~g--n~Iy-~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~k 327 (412)
T KOG3881|consen 257 PSG--NFIY-TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHK 327 (412)
T ss_pred CCC--cEEE-EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhh
Confidence 654 5555 4899999999999887654 48899999999999999999999999999 99999999887654
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.38 E-value=1.9e-11 Score=113.40 Aligned_cols=204 Identities=11% Similarity=0.141 Sum_probs=132.6
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEE-eeecCCceEEEEEec-CCCEEEEEeCCCCCCCCC
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRR-DFERGGGIGVVEMLF-RCNILALVGGGPDPQYPL 155 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d 155 (298)
.....|.+.|..+.|-|-...|++++. .++++||+...++.... .+.|.+.+..+++.. +...+++ || .|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t--Gg-----RD 166 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT--GG-----RD 166 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee--cc-----CC
Confidence 344678889999999994456777765 56999999988765443 222667777777654 3444444 33 78
Q ss_pred CeEEEEeCCCCcE--E-----------EE---------------e----ecCCceEEEEEeC-CeEEEEE--CCeEEEEE
Q 022387 156 NKVMIWDDHQSRC--I-----------GE---------------L----SFRSEVRSVKLRR-DRIIVVL--EQKIFVYN 200 (298)
Q Consensus 156 ~~v~iWD~~~~~~--~-----------~~---------------~----~~~~~v~~v~~~~-~~l~v~~--~~~I~iwd 200 (298)
+.|.|||.+-... . .+ . .+.+.|+.+.|.. ..++.++ |+.|+|||
T Consensus 167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD 246 (720)
T KOG0321|consen 167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD 246 (720)
T ss_pred CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence 9999999753210 0 00 0 0112355556654 3444443 58999999
Q ss_pred cCCCeEEEEEe------ccC---CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc---eEeeccccc---ceeEEE
Q 022387 201 FADLKLLHQIE------TIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDS---RIACFA 265 (298)
Q Consensus 201 ~~~~~~i~~~~------~~~---~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~---~~~~~~H~~---~V~~l~ 265 (298)
|+......... .+. ...+.+.+..|..|.+|.+++. |+.|..|++.... ...+.+|-. .|.+ .
T Consensus 247 LRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~ 324 (720)
T KOG0321|consen 247 LRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-E 324 (720)
T ss_pred ecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeee-e
Confidence 98654433221 111 1355677777777788877666 9999999987543 234444432 2333 4
Q ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 266 LTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 266 fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
.+||+.+|++|+.|.. +.||.+.+-+
T Consensus 325 lSpd~~~l~SgSsd~~-ayiw~vs~~e 350 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQ-AYIWVVSSPE 350 (720)
T ss_pred cCCCCceEeccCCCcc-eeeeeecCcc
Confidence 6899999999999999 9999988654
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=5e-11 Score=111.62 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=137.1
Q ss_pred CCcccCCCCCCeEEEEEcCCCC---EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387 77 AESTSSSPPPTLLHISFNQDHG---CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (298)
Q Consensus 77 ~~~~~~~~~~~V~~v~fs~dg~---~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
.+....+|.++|+|+.|=|+.+ +|++|+.|+ +++|.+..........+. .+.+.++++.-.........
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~-g~~~~~~cv~a~~~~~~~~~------ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQ-GHCKECVCVVARSSVMTCKA------ 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeec-CcceeEEEEEeeeeEEEeec------
Confidence 3445578999999999999888 888988766 779998844443344442 23444444432222222212
Q ss_pred CCCCeEEEEeCCCCc--EEEEeecCC-ce--EEEEE--eCCeEEEEECC---eEEEEEcC--CCeEEEEEeccCCCcceE
Q 022387 153 YPLNKVMIWDDHQSR--CIGELSFRS-EV--RSVKL--RRDRIIVVLEQ---KIFVYNFA--DLKLLHQIETIANPKGLC 220 (298)
Q Consensus 153 ~~d~~v~iWD~~~~~--~~~~~~~~~-~v--~~v~~--~~~~l~v~~~~---~I~iwd~~--~~~~i~~~~~~~~~~~~~ 220 (298)
.|+++.+||.+..+ +...+.+.- .+ +|+++ +++.++.+..+ .|.+|.-. ..+.+..+.+|...+..+
T Consensus 119 -ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl 197 (764)
T KOG1063|consen 119 -ADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL 197 (764)
T ss_pred -cCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence 57999999996555 333333321 22 22222 34455555444 44444332 346778889999999999
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEEcCCcc-------------------------e-------EeecccccceeEEEECC
Q 022387 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------------------T-------KFIMAHDSRIACFALTQ 268 (298)
Q Consensus 221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-------------------------~-------~~~~~H~~~V~~l~fsp 268 (298)
+|+.-+.+.++++||+.|..|+||.+.... + ..+.+|..-|.++.|+|
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p 277 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP 277 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence 988766545555589999999999753110 0 12359999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEECCCC
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
++..|.++|.|.+ +-||.-.+.
T Consensus 278 ~~~~LLSASaDks-miiW~pd~~ 299 (764)
T KOG1063|consen 278 EGLDLLSASADKS-MIIWKPDEN 299 (764)
T ss_pred chhhheecccCcc-eEEEecCCc
Confidence 9999999999999 889987654
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=2.4e-10 Score=100.20 Aligned_cols=187 Identities=17% Similarity=0.191 Sum_probs=132.1
Q ss_pred CeEEEEEcCCCCEEEEEc-CCe--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 87 TLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs-~~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
.|.-.-||. .++|..+ +++ +++.+......+....+ ...+..+.+ +-..++++= ...|.|+|+
T Consensus 48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f--pt~IL~Vrm--Nr~RLvV~L--------ee~IyIydI 113 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFF--PTSILAVRM--NRKRLVVCL--------EESIYIYDI 113 (391)
T ss_pred EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEec--CCceEEEEE--ccceEEEEE--------cccEEEEec
Confidence 344444553 4555444 344 77888877666655555 344444443 434444433 134999999
Q ss_pred CCCcEEEEeecC----CceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 164 HQSRCIGELSFR----SEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 164 ~~~~~~~~~~~~----~~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
++.+.+.++... ..+.++.++.. .++.-. .|.|.+||+.+.+.+.++..|..++.+++|++++ .+||+
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G--~llAT- 190 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG--TLLAT- 190 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC--CEEEE-
Confidence 999988887654 23566666665 344322 3899999999999999999999998888888765 89995
Q ss_pred cCCCce-EEEEEcCCcc-eEeecccc--cceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 235 GLQKGQ-VRVEHYASKR-TKFIMAHD--SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 235 Gs~dg~-v~i~~~~~~~-~~~~~~H~--~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+|+.|+ |+|+....++ +..|+.-. ..|.+|+|+||+++|+..|.-++ |+||.+..-
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~~ 250 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEKV 250 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEeccc
Confidence 888885 5668887654 45665432 35899999999999999999999 999998754
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=2.5e-11 Score=113.59 Aligned_cols=201 Identities=14% Similarity=0.100 Sum_probs=139.2
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcC------CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~------~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
.+.++|.-.|++++.||+|++||++.. ..|++|+...-.....+.+ |.-.+..+.+++++.+++.++
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvs------ 591 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVS------ 591 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEee------
Confidence 344789999999999999999999864 2377998877555545554 445566777788889999988
Q ss_pred CCCCeEEEEeCCCCcE-EEE---ee-cCCceEEEEEeCCe--EEEEE-CCeEEEEEcCCC--eEEEEEec--cCCCcceE
Q 022387 153 YPLNKVMIWDDHQSRC-IGE---LS-FRSEVRSVKLRRDR--IIVVL-EQKIFVYNFADL--KLLHQIET--IANPKGLC 220 (298)
Q Consensus 153 ~~d~~v~iWD~~~~~~-~~~---~~-~~~~v~~v~~~~~~--l~v~~-~~~I~iwd~~~~--~~i~~~~~--~~~~~~~~ 220 (298)
.|+++.+|....... ... .+ |...|.++.|+++. ++.+. |++|++|...+. +.+..+.. +...+..+
T Consensus 592 -RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv 670 (764)
T KOG1063|consen 592 -RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAV 670 (764)
T ss_pred -cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeE
Confidence 899999999854321 111 22 23367888898864 44444 589999999776 55555432 33344444
Q ss_pred EEEeCC---CCeEEEEecCCCceEEEEEcC------Ccc-------eEeecccccceeEEEECCC----------CCEEE
Q 022387 221 AVSQGV---GSLVLVCPGLQKGQVRVEHYA------SKR-------TKFIMAHDSRIACFALTQD----------GQLLA 274 (298)
Q Consensus 221 ~~s~~~---d~~~la~sGs~dg~v~i~~~~------~~~-------~~~~~~H~~~V~~l~fspd----------g~~lA 274 (298)
++.+-- ....++ .|-..|.|.+|... +.- .....+|.+.|+.++|+|. ...||
T Consensus 671 ~~~~~~~~e~~~~va-vGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la 749 (764)
T KOG1063|consen 671 AYLPVDHNEKGDVVA-VGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA 749 (764)
T ss_pred EeeccccccccceEE-EEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence 444321 122455 49999999998865 110 1133568889999999965 34679
Q ss_pred EEeCCCCEEEEEECC
Q 022387 275 TSSTKGTLVRIFNTL 289 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~ 289 (298)
.|++|-+ +||+++.
T Consensus 750 ~~g~D~~-vri~nv~ 763 (764)
T KOG1063|consen 750 VGGDDES-VRIFNVD 763 (764)
T ss_pred eecccce-eEEeecc
Confidence 9999999 9999864
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=6.7e-11 Score=104.44 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
+.|.+-|.++.|+.+|++||+|+++- ++||+++.. +.+-.....|...+.++++.. .+..+..++ .
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~------~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGE------R 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCC------C
Confidence 57788999999999999999999855 789998632 222222221334455555443 333444333 5
Q ss_pred CCeEEEEeCCCCcEEEEeecCC---ceEEEEEeC--CeEEEEE-CCeEEEEEcC
Q 022387 155 LNKVMIWDDHQSRCIGELSFRS---EVRSVKLRR--DRIIVVL-EQKIFVYNFA 202 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~--~~l~v~~-~~~I~iwd~~ 202 (298)
+++|.+-|+++.+.+.-+.+.. .|+.+..++ +.+++.+ ++.|.+||++
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence 6899999999988776665543 677766665 2333333 3666677664
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=3.2e-11 Score=100.49 Aligned_cols=139 Identities=10% Similarity=0.142 Sum_probs=98.3
Q ss_pred CCCeEEEEeCCC---------C-cEE-EEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeE------EEEEeccCC-
Q 022387 154 PLNKVMIWDDHQ---------S-RCI-GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKL------LHQIETIAN- 215 (298)
Q Consensus 154 ~d~~v~iWD~~~---------~-~~~-~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~------i~~~~~~~~- 215 (298)
.+|+|.+..+.+ + ..+ .+..+..+++.+.|+.++++++.+|.|+-|..+.... +.+.+....
T Consensus 30 ~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 30 LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 568888887542 1 122 2334567999999999999999999999998754322 111111111
Q ss_pred ------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 216 ------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 216 ------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
.+..+.+.|..+ .++. +| .|+.+.-||++.++++ ++++|+..|.+++--.....+.||++||+ +||||.
T Consensus 110 ~~~evPeINam~ldP~en-Si~~-Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~ 185 (325)
T KOG0649|consen 110 DAVEVPEINAMWLDPSEN-SILF-AG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDT 185 (325)
T ss_pred CcccCCccceeEeccCCC-cEEE-ec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEec
Confidence 123344444333 3333 24 7899999999998876 89999999999998555556889999999 999999
Q ss_pred CCCcEEEe
Q 022387 289 LDGTLLQE 296 (298)
Q Consensus 289 ~tg~~l~~ 296 (298)
+++|+++.
T Consensus 186 kt~k~v~~ 193 (325)
T KOG0649|consen 186 KTQKHVSM 193 (325)
T ss_pred cccceeEE
Confidence 99998764
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=9.4e-11 Score=112.34 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=129.3
Q ss_pred EEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCC---CEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 91 v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~v~iWD~~~~~ 167 (298)
-.||+|++++..-..+.|+||...++.++...+. |...+..+.+.+.. .++.+++ .+|+|++||...+.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~-~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLED-HTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGE 93 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhccc-ccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcE
Confidence 3599999999999999999999999887665554 45555555554443 3444555 68999999999988
Q ss_pred EEEEeecCCceEEEEEe------------------------C-------------------------------------C
Q 022387 168 CIGELSFRSEVRSVKLR------------------------R-------------------------------------D 186 (298)
Q Consensus 168 ~~~~~~~~~~v~~v~~~------------------------~-------------------------------------~ 186 (298)
.+.++..+-++..+.+. . .
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 87766543333222110 0 0
Q ss_pred eEEEEECCeEEEEEcCCCeE-EEEEe---ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-----cceEeeccc
Q 022387 187 RIIVVLEQKIFVYNFADLKL-LHQIE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAH 257 (298)
Q Consensus 187 ~l~v~~~~~I~iwd~~~~~~-i~~~~---~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-----~~~~~~~~H 257 (298)
+..++....+.+|+...... ..... .|.....+.+++ +.+.++| +|..||.|.+|.--. .....+.-|
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s--pn~~~~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS--PNERYLA-AGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEec--cccceEE-EeccCCcEEEEeccccccccccceEEEec
Confidence 22233345677777755331 00011 122233344554 4558888 599999999976322 234578889
Q ss_pred ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
...|++++||+||.+|.|||..|. +-+|.+.+++
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~ 284 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK 284 (792)
T ss_pred ccccceeEEecCCceEeecccceE-EEEEeecCCC
Confidence 999999999999999999999998 8899999987
No 177
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=3.5e-10 Score=94.61 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=90.2
Q ss_pred eEEEEeCCC-CcEEEEe--ecCCceEEEEEeCC--eEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 157 KVMIWDDHQ-SRCIGEL--SFRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 157 ~v~iWD~~~-~~~~~~~--~~~~~v~~v~~~~~--~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
...||-++. +..+..+ ...++|.+++|+|+ .++++. ...|.+||++ .+.+.++.. .+...+. ++|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~i~--wsP~G 112 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNTIS--WSPDG 112 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceEEE--ECCCC
Confidence 355555532 2233333 34457999999874 555553 2589999996 666666653 3344444 55556
Q ss_pred eEEEEec--CCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEec
Q 022387 229 LVLVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 229 ~~la~sG--s~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~------Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+++++| ...|.|.+||...........| ..++.++|||||++|||+.. |.. ++||++ .|+++.+.
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSF-QGRLLYKK 186 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEeccceecccc-EEEEEe-cCeEeEec
Confidence 8888755 3468899999986554433334 34789999999999999964 788 999998 48787664
No 178
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.33 E-value=8.4e-10 Score=95.21 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=119.2
Q ss_pred eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC-CCcEEEEeecCC---ceEEEE
Q 022387 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSFRS---EVRSVK 182 (298)
Q Consensus 107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~-~~~~~~~~~~~~---~v~~v~ 182 (298)
.+.|||=...+++.+..+ ..++..+.+. .+.++++- .++|.||... +-+.++.+.... ...+++
T Consensus 76 kviIWDD~k~~~i~el~f--~~~I~~V~l~--r~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSF--NSEIKAVKLR--RDRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred eEEEEecccCcEEEEEEe--ccceeeEEEc--CCeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 477999555566667776 6777776664 45555554 5889999987 445555554322 233343
Q ss_pred EeCCe-EEEEE---CCeEEEEEcCCCeE--EEEEeccCCCcceEEEEeCCCCeEEEEecCCCce-EEEEEcCCcc-eEee
Q 022387 183 LRRDR-IIVVL---EQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ-VRVEHYASKR-TKFI 254 (298)
Q Consensus 183 ~~~~~-l~v~~---~~~I~iwd~~~~~~--i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~-v~i~~~~~~~-~~~~ 254 (298)
-+... +++.- -|.|.|-|+...+. ...+.+|...+.+++++.++ .++| ++|..|+ |+|||..++. +..+
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G--t~vA-TaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG--TLVA-TASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc--cEEE-EeccCcEEEEEEEcCCCcEeeee
Confidence 33333 33322 28999999965544 46788999999999998865 8888 5888885 5779988765 4455
Q ss_pred c-c-cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 255 M-A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 255 ~-~-H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+ + ....|.||+||||+.+||.+|+.|| ++||.++.-
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~ 258 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDT 258 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecC
Confidence 4 3 3356999999999999999999999 999998863
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.32 E-value=6.4e-11 Score=110.08 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=104.9
Q ss_pred CCeEEEEeCCCCc-----EEEEeecCCceEEEEEeC---CeEEEEEC-CeEEEEEcCC-------CeEEEEEeccCCCcc
Q 022387 155 LNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR---DRIIVVLE-QKIFVYNFAD-------LKLLHQIETIANPKG 218 (298)
Q Consensus 155 d~~v~iWD~~~~~-----~~~~~~~~~~v~~v~~~~---~~l~v~~~-~~I~iwd~~~-------~~~i~~~~~~~~~~~ 218 (298)
-|.|.|++++... .+-.+.....|+.+.|++ .+++++++ +.|++|.+.. +++-..+..|...+.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 3789999998732 233344455788888875 58888875 8999999953 344556677777666
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
.+.|++-.- .+|| +.++|-+|++||+.+.... .|.+|+..|..+||||||+++||.+.||+ |||++-+++.
T Consensus 682 slRfHPLAa-dvLa-~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e 753 (1012)
T KOG1445|consen 682 SLRFHPLAA-DVLA-VASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSRE 753 (1012)
T ss_pred EEEecchhh-hHhh-hhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCC
Confidence 666665332 3455 4799999999999887655 79999999999999999999999999999 9999988764
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.32 E-value=2.6e-10 Score=112.79 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=139.8
Q ss_pred CCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCc-------eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC
Q 022387 82 SSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (298)
Q Consensus 82 ~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
+.|...|..++.+++ +.+|++|++|| |++|++.... ...+... .+..+..+.+++.++.+|+++
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t------ 1117 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST------ 1117 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc------
Confidence 566778888888765 59999999977 7899985422 1122221 366788889999999999986
Q ss_pred CCCCeEEEEeCCC--C-----cEEEEe--ecCCceEEEE-Ee---CC-eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc
Q 022387 153 YPLNKVMIWDDHQ--S-----RCIGEL--SFRSEVRSVK-LR---RD-RIIVVLE-QKIFVYNFADLKLLHQIETIANPK 217 (298)
Q Consensus 153 ~~d~~v~iWD~~~--~-----~~~~~~--~~~~~v~~v~-~~---~~-~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~ 217 (298)
.||.|++.++.- . .+.+.. ...+.+..+. +. .. .++.+++ +.|..||++...-..+++......
T Consensus 1118 -~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1118 -KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred -CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 789999998765 1 112222 2223333321 21 12 4445555 799999998877777776554445
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-ee-cccccceeEEEECCCC---CEEEEEeC--CCCEEEEEECCC
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-MAHDSRIACFALTQDG---QLLATSST--KGTLVRIFNTLD 290 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~-~~H~~~V~~l~fspdg---~~lAt~S~--Dgt~IrIWd~~t 290 (298)
.+.++.-++.++++++ |+..|.+.+||+..+... .. ..|..+|+.|+.+|-. ...++++. .+. |-+|++.+
T Consensus 1197 ~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn~~~ 1274 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWNMET 1274 (1431)
T ss_pred ceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeeeccc
Confidence 5666777777788885 999999999999987644 22 2344778888877543 45555544 566 99999999
Q ss_pred CcEEEec
Q 022387 291 GTLLQEG 297 (298)
Q Consensus 291 g~~l~~~ 297 (298)
|.+-..+
T Consensus 1275 g~~~~vl 1281 (1431)
T KOG1240|consen 1275 GLRQTVL 1281 (1431)
T ss_pred CcceEEE
Confidence 9775543
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.32 E-value=9.7e-11 Score=103.70 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC--------C------CceEEEEeee-cCCceEEEEEecCCCEEEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFE-RGGGIGVVEMLFRCNILALV 145 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~--------~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (298)
..|...|++|.|+|+|++||+|+++| +.+|-.. + ..++..+.++ |..++.-++|..+++.++++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 35667999999999999999999977 5589544 2 1133333332 55677777888888877777
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcEEEEeecCC-ceEEEEEe
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRS-EVRSVKLR 184 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~ 184 (298)
+ .|+.+++||+..|+.+..+.-+. -|..++|.
T Consensus 142 s-------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 142 S-------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred e-------ccceEEEEEeccceeEeeccccccccceeecc
Confidence 6 68999999999999887765443 34445544
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.32 E-value=2.5e-11 Score=107.13 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=97.0
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCe
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLK 205 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~ 205 (298)
|.+.+.-+.|++..+. .+++|+ .|.+|+||++-.+.....+. +
T Consensus 80 Ht~~vLDi~w~PfnD~-vIASgS-----eD~~v~vW~IPe~~l~~~lt-------------------------------e 122 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDC-VIASGS-----EDTKVMVWQIPENGLTRDLT-------------------------------E 122 (472)
T ss_pred ccccccccccCccCCc-eeecCC-----CCceEEEEECCCcccccCcc-------------------------------c
Confidence 4566666667654332 344444 46888888875544332221 4
Q ss_pred EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (298)
Q Consensus 206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir 284 (298)
++..+.+|...++.++.++...+.++ +.+.|..|.+|+..++... ++. |..-|.++.|+.||.+|+|.+.|+. ||
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLl--sag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vR 198 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLL--SAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VR 198 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHh--hccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eE
Confidence 45667777777888888887655444 4688899999999987644 566 9999999999999999999999999 99
Q ss_pred EEECCCCcEEEe
Q 022387 285 IFNTLDGTLLQE 296 (298)
Q Consensus 285 IWd~~tg~~l~~ 296 (298)
|||.++|+++.|
T Consensus 199 v~dpr~~~~v~e 210 (472)
T KOG0303|consen 199 VIDPRRGTVVSE 210 (472)
T ss_pred EEcCCCCcEeee
Confidence 999999999876
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.32 E-value=1.2e-10 Score=110.63 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=131.3
Q ss_pred ccCCCCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCCce--EEEEee---ecCCceEEEEEecCC--CEEEEEeCCCC
Q 022387 80 TSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE--IFRRDF---ERGGGIGVVEMLFRC--NILALVGGGPD 150 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 150 (298)
.....+..|+|+.|+|. ..+||.|..+| |.+||+...+. ...... .|...+..+.|..+. ..++.++
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s---- 312 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS---- 312 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe----
Confidence 33455679999999995 56777777766 88999976554 222111 145556666665432 2355555
Q ss_pred CCCCCCeEEEEeCCCCcE---EEEe----------ecCCceEEEEEe---CCeEEEEEC-CeEEEEEcCCC--------e
Q 022387 151 PQYPLNKVMIWDDHQSRC---IGEL----------SFRSEVRSVKLR---RDRIIVVLE-QKIFVYNFADL--------K 205 (298)
Q Consensus 151 ~~~~d~~v~iWD~~~~~~---~~~~----------~~~~~v~~v~~~---~~~l~v~~~-~~I~iwd~~~~--------~ 205 (298)
.||.|..|+++.-.. .... .-...++++.|. +..++++++ |.|.-=+-... +
T Consensus 313 ---sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 313 ---SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred ---cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 689999998765321 1110 111246777775 568888886 66665333221 1
Q ss_pred EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceEeecccccceeEEEECCCC-CEEEEEeCCCCE
Q 022387 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTL 282 (298)
Q Consensus 206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~ 282 (298)
....+..|..++.++.+++-....+++ +. |..|+||... ..++..+..+...|++++|||-- ..||++..||.
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls--~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~- 465 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLS--VG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN- 465 (555)
T ss_pred ccccccccCcceEeeecCCCccceeee--ec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-
Confidence 223445566666677666655434444 33 9999999876 34566788888889999999974 79999999999
Q ss_pred EEEEECCCC
Q 022387 283 VRIFNTLDG 291 (298)
Q Consensus 283 IrIWd~~tg 291 (298)
|.|||+...
T Consensus 466 l~iWDLl~~ 474 (555)
T KOG1587|consen 466 LDIWDLLQD 474 (555)
T ss_pred eehhhhhcc
Confidence 999998753
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.32 E-value=1.4e-10 Score=100.26 Aligned_cols=94 Identities=9% Similarity=0.097 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-e---ecccccceeEEEECCC
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-F---IMAHDSRIACFALTQD 269 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~---~~~H~~~V~~l~fspd 269 (298)
|.|+|.|+.++++...+.+|...+..+.+.++.. ++++ ++|.|-.|++|++++.... . +.+|...|-++.|+++
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvl-s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVL-SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEE-EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 7899999988888888888888777777776542 3444 6999999999999987643 3 4689999999999999
Q ss_pred CCEEEEEeCCCCEEEEEECCC
Q 022387 270 GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 270 g~~lAt~S~Dgt~IrIWd~~t 290 (298)
|.+||++|+|.+ |++|++..
T Consensus 193 gd~i~ScGmDhs-lk~W~l~~ 212 (385)
T KOG1034|consen 193 GDRIASCGMDHS-LKLWRLNV 212 (385)
T ss_pred CCeeeccCCcce-EEEEecCh
Confidence 999999999999 99999984
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.31 E-value=3.4e-12 Score=121.44 Aligned_cols=205 Identities=11% Similarity=0.127 Sum_probs=138.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
++|.+.|+|+.|...|.++++|+++- ++||.+++..++..... |.+.+.-+++..+.-.++.++ .|+-|++
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS-------~D~vIrv 258 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS-------NDKVIRV 258 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc-------cCceEEE
Confidence 78889999999999999999999966 67999999887666553 566666666655444444444 6889999
Q ss_pred EeCCCCcEEEEeec-CCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEE---------------EEe---------ccC-
Q 022387 161 WDDHQSRCIGELSF-RSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH---------------QIE---------TIA- 214 (298)
Q Consensus 161 WD~~~~~~~~~~~~-~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~---------------~~~---------~~~- 214 (298)
|-+..+..+.-+.. .+.|++++|+|.. ....+|++++||.+ ..++. .+. +..
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc-cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999987766554 4689999999877 33345899999987 11111 110 000
Q ss_pred ---CC-----------cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCC-CCEEEEEeC
Q 022387 215 ---NP-----------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-GQLLATSST 278 (298)
Q Consensus 215 ---~~-----------~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspd-g~~lAt~S~ 278 (298)
.. +..+.....++..-+.++.-.+-.+++|+.-... ...+.+|...+..|.++|= .+...+++.
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 00 0000011111111111112233445557766554 4578899999999999984 566678899
Q ss_pred CCCEEEEEECCCCcEEEec
Q 022387 279 KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 279 Dgt~IrIWd~~tg~~l~~~ 297 (298)
||. +-|||+..|..++.|
T Consensus 417 dgs-t~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 417 DGS-TIIWDIWEGIPIKHY 434 (1113)
T ss_pred CCc-eEeeecccCCcceee
Confidence 999 889999999888766
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=2.3e-09 Score=97.00 Aligned_cols=194 Identities=14% Similarity=0.087 Sum_probs=120.9
Q ss_pred CeEEEEEcCCCCEEEEEcC--CeEEEEEcCC-CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
....++++|||++|++++. +++.+|+++. +...........+....+.+.++++.++++.. .++.|.+||+
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~~ 109 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSPL 109 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEEE
Confidence 4567899999999887754 5688899873 33222222212345567777888887777763 3588999999
Q ss_pred CCC----cEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEE-------EEeccCCCcceEEEEeCCCC
Q 022387 164 HQS----RCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-------QIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 164 ~~~----~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~-------~~~~~~~~~~~~~~s~~~d~ 228 (298)
.+. +.+..+........+.++++ .++++. ++.|.+||+.+...+. .+.....+ ..++|+ +++
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p-~~~~~~--pdg 186 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP-RHMVFH--PNQ 186 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC-ceEEEC--CCC
Confidence 743 22333333345666778765 455544 4899999997633221 11122222 234554 555
Q ss_pred eEEEEecCCCceEEEEEcCC--cce---Eeeccc------ccceeEEEECCCCCEEEEEeC-CCCEEEEEECCC
Q 022387 229 LVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLD 290 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~--~~~---~~~~~H------~~~V~~l~fspdg~~lAt~S~-Dgt~IrIWd~~t 290 (298)
.++.++...++.|.+|+++. +.+ ..+..+ ......|.|+|||++|+++.. +++ |.+|++..
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~ 259 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSE 259 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeC
Confidence 77765456689999999863 222 122221 123446999999999998855 566 99999864
No 187
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=5e-10 Score=96.52 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=137.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|-.+|++++||+||++|.+++.|- +++||+..+..+.+..| ...+..+.+.+.....+++.- .+..-.+
T Consensus 62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf--~spv~~~q~hp~k~n~~va~~------~~~sp~v 133 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF--DSPVWGAQWHPRKRNKCVATI------MEESPVV 133 (405)
T ss_pred hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc--cCccceeeeccccCCeEEEEE------ecCCcEE
Confidence 56777999999999999999999854 78999998888888887 678888888776555555441 1222333
Q ss_pred EeCCCC--cEEEEe---ecCCceEEEEEe--CCeEEEEEC-CeEEEEEcCCCeEEEEEeccC-CCcceEEEEeCCCCeEE
Q 022387 161 WDDHQS--RCIGEL---SFRSEVRSVKLR--RDRIIVVLE-QKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 161 WD~~~~--~~~~~~---~~~~~v~~v~~~--~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~-~~~~~~~~s~~~d~~~l 231 (298)
-++... .++..= ..+....+..|+ ++.+.+++. |.+.+||..+.+++..++... ..+..+.++..+ ..|
T Consensus 134 i~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g--~~l 211 (405)
T KOG1273|consen 134 IDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG--RFL 211 (405)
T ss_pred EEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC--cEE
Confidence 344321 111110 011111222344 456666664 899999999999999887654 445556666655 666
Q ss_pred EEecCCCceEEEEEcCCc----c--eE----eec--ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 232 VCPGLQKGQVRVEHYASK----R--TK----FIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~----~--~~----~~~--~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
++ -..|..|+.|+.+.- + .. .+. -.+..=.+++||.||.|++.++.--..+.||....|.+++-
T Consensus 212 ii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 212 II-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred EE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 65 788999999987521 0 00 111 11234578999999999998887666699999999988763
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.8e-10 Score=112.36 Aligned_cols=195 Identities=16% Similarity=0.211 Sum_probs=130.7
Q ss_pred CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeee--cCCceEEEEEecC--CCEEEEEeCCCCCCCCCCeEEEE
Q 022387 87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
+-..+.|+|=...|+++.+ ..|+|||.+..+.+...... ....+..+++... ..++.+++ .||.||||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVIRIW 1138 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceEEEe
Confidence 3456788988888998886 77899999887764333210 1234455555432 33444544 68999999
Q ss_pred eCC-----CCcEEEEeec----------CCceEEEEEeCCeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387 162 DDH-----QSRCIGELSF----------RSEVRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (298)
Q Consensus 162 D~~-----~~~~~~~~~~----------~~~v~~v~~~~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~ 225 (298)
+-. +.+.+..+.. .+-+..+......+++.++ ..|+|||....+.++.+....+ ..+.+++.+
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccc
Confidence 742 2233332221 0122222223456666664 7999999998888887765422 334466655
Q ss_pred CCC-eEEEEecCCCceEEEEEcCCcc----eEeecccccc--eeEEEECCCCC-EEEEEeCCCCEEEEEECCCC
Q 022387 226 VGS-LVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSR--IACFALTQDGQ-LLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 226 ~d~-~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~--V~~l~fspdg~-~lAt~S~Dgt~IrIWd~~tg 291 (298)
..+ .++| +|-.||.|++||..... +...+.|+.. |..+.+.+.|- .|++||.||. |++||++..
T Consensus 1218 ~~~gn~i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1218 LVHGNIIA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMS 1289 (1387)
T ss_pred ccCCceEE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccC
Confidence 443 6666 49999999999987643 4477889887 99999999874 4999999999 999999973
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=6.7e-11 Score=102.73 Aligned_cols=135 Identities=13% Similarity=0.245 Sum_probs=98.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecCC-ceEEEEEe----CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC-cceEEEEeCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRS-EVRSVKLR----RDRIIVVL-EQKIFVYNFADLKLLHQIETIANP-KGLCAVSQGV 226 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~-~v~~v~~~----~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~~~ 226 (298)
+.++|+++|..+++.+.+++.+. .+..+.|. +..+.+++ +|+|++||++....+..+.-..++ ...++|...-
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC 127 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence 45889999999999999998764 45555553 45666654 689999999877666555543333 2223333332
Q ss_pred CCeEEEEecCC----CceEEEEEcCCcce--E-eecccccceeEEEECCC-CCEEEEEeCCCCEEEEEECCC
Q 022387 227 GSLVLVCPGLQ----KGQVRVEHYASKRT--K-FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 227 d~~~la~sGs~----dg~v~i~~~~~~~~--~-~~~~H~~~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~t 290 (298)
...++++ |.. +-.|.+||+...+. . -...|...|++|+|+|. -.+|+|||.||- |.|||+..
T Consensus 128 k~~ii~~-GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~ 197 (376)
T KOG1188|consen 128 KKNIIAC-GTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKK 197 (376)
T ss_pred cCCeEEe-ccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCC
Confidence 4477775 643 66888899887643 2 35689999999999986 689999999998 99999874
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.1e-10 Score=110.76 Aligned_cols=198 Identities=16% Similarity=0.264 Sum_probs=130.9
Q ss_pred CCCCCCeEEEEEc--CCCCEEEEEcCCe-EEEEEc-CC----CceEEEEe-ee-----cCCceEEEEEecCCCEEEEEeC
Q 022387 82 SSPPPTLLHISFN--QDHGCFAAGTDHG-FRIYNC-DP----FREIFRRD-FE-----RGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 82 ~~~~~~V~~v~fs--~dg~~lasgs~~g-i~vw~~-~~----~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
......|+.+.+- .|..++.+|+.|| ||||.- .+ .+.+..+. +. ..+.-.+++|......+.+.|
T Consensus 1106 ~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG- 1184 (1387)
T KOG1517|consen 1106 AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG- 1184 (1387)
T ss_pred CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-
Confidence 3445688888864 3556888998877 779953 22 22221111 10 122225556665566665555
Q ss_pred CCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEE---eCCeEEEE-ECCeEEEEEcCCC---eEEEEEeccCCCcc
Q 022387 148 GPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKL---RRDRIIVV-LEQKIFVYNFADL---KLLHQIETIANPKG 218 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~---~~~~l~v~-~~~~I~iwd~~~~---~~i~~~~~~~~~~~ 218 (298)
.-+.|+|||..+.++...+.+.+ -|+++.- +.+.++++ .||.|++||.+-. ..+...+.|.....
T Consensus 1185 ------d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1185 ------DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred ------CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 23789999999998888877654 4555543 23445544 3799999998632 35667777877644
Q ss_pred eEEE--EeCCCCeEEEEecCCCceEEEEEcCCcc-e--Eeecccc--c-ceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 219 LCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKR-T--KFIMAHD--S-RIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 219 ~~~~--s~~~d~~~la~sGs~dg~v~i~~~~~~~-~--~~~~~H~--~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
++.+ ...+.+. |+ +|+.||.|++||+.... . .++..|- + .+++|..+++...+||||. +. |+||++..
T Consensus 1259 Iv~~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~~G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSLSG 1334 (1387)
T ss_pred ceeEEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEecCh
Confidence 5544 4444443 44 69999999999998732 2 2445554 3 5999999999999999998 76 99999764
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=5.1e-10 Score=107.38 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=119.7
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
+.+=|-..|.+++|++||.+|.+|+.-+ +.+|.+++.+..+--.+ ++.+..+.++++++..+++. .|+.|
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL--gs~I~~i~vS~ds~~~sl~~-------~DNqI 316 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL--GSPILHIVVSPDSDLYSLVL-------EDNQI 316 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc--CCeeEEEEEcCCCCeEEEEe-------cCceE
Confidence 3355667999999999999999999866 56999999887776666 77888888888888877776 45555
Q ss_pred EEEeC-----------------------------------------------------CCCcEEEEeec------CC---
Q 022387 159 MIWDD-----------------------------------------------------HQSRCIGELSF------RS--- 176 (298)
Q Consensus 159 ~iWD~-----------------------------------------------------~~~~~~~~~~~------~~--- 176 (298)
.+-.. .+...+.++.. .+
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 55543 33222222210 00
Q ss_pred ---ceEEEEEeCCeEEEEE-----------C--CeEEEEEcCCC----eEEEEEe-ccCCCcceEEEEeCCCCeEEEEec
Q 022387 177 ---EVRSVKLRRDRIIVVL-----------E--QKIFVYNFADL----KLLHQIE-TIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 177 ---~v~~v~~~~~~l~v~~-----------~--~~I~iwd~~~~----~~i~~~~-~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
.+.++....+....++ + -.+++|-.... .+..++. .|....-..++.........+ +.
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v-ta 475 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV-TA 475 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE-Ee
Confidence 0111111111111111 0 14555644221 1221221 233333333444333333444 47
Q ss_pred CCCceEEEEEcCCcc-------e---E-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 236 LQKGQVRVEHYASKR-------T---K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 236 s~dg~v~i~~~~~~~-------~---~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+.||.++||.++... . + .-..|..++++++||.||.+||.+ .|++ |.|||..+
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~-Itiwd~~~ 539 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDT-ITIWDYDT 539 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCE-EEEecCCC
Confidence 899999999984211 1 1 122478999999999999766655 6887 99999988
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=6.7e-10 Score=92.73 Aligned_cols=194 Identities=12% Similarity=0.143 Sum_probs=125.8
Q ss_pred CeEEEEEcCCCCEEEEEcCCe-EEEEEcCC---------CceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDP---------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
.|..-+++|.+++|+.|...| |.|+.+.. ++.....+-.|++++..+.+ ..+.+..++ ||
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f--~d~~Lls~g--------dG 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAF--HDDFLLSGG--------DG 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeee--ehhheeecc--------Cc
Confidence 455668899999999999866 77876532 22222222225666665554 344444443 58
Q ss_pred eEEEEeCCCCcE------EEEeec--------CCceEEEEEeC--C-eEEEEECCeEEEEEcCCCeEEEEEeccCCCcce
Q 022387 157 KVMIWDDHQSRC------IGELSF--------RSEVRSVKLRR--D-RIIVVLEQKIFVYNFADLKLLHQIETIANPKGL 219 (298)
Q Consensus 157 ~v~iWD~~~~~~------~~~~~~--------~~~v~~v~~~~--~-~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~ 219 (298)
.|+-|.++.... +.++.. -..|.++...| + .+++++|+.++.||+++++..+++++|...+.+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 899998754221 111111 12566666654 3 455556789999999999999999999988877
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-e---------ecccccc-eeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-F---------IMAHDSR-IACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~---------~~~H~~~-V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+... ...+++| +|+.||++++||.++.+.. . ++.|.+. |-+++- +..+|++|+-. .+.||++
T Consensus 162 vv~R-~~~~qil--sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp--~lslwhL 234 (325)
T KOG0649|consen 162 VVGR-NANGQIL--SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KLSLWHL 234 (325)
T ss_pred eeec-ccCccee--ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC--ceeEEec
Confidence 7652 2233666 5999999999999875422 2 2333332 556655 55699998744 3789999
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
++.++...|
T Consensus 235 rsse~t~vf 243 (325)
T KOG0649|consen 235 RSSESTCVF 243 (325)
T ss_pred cCCCceEEE
Confidence 988776544
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1e-10 Score=107.12 Aligned_cols=206 Identities=14% Similarity=0.147 Sum_probs=131.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCCCCCeEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~v~ 159 (298)
.+|.+-|+|+.|+.||.+||+|++|. +.|||.-..+.+....-.|...|.++.+.+.. +.+++.+. .|+.|+
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk~i~ 120 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDKLIK 120 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------CcceEE
Confidence 57888999999999999999999988 77999887776666554466778888887654 44444443 469999
Q ss_pred EEeCCCCc----------EEEEeec-CCceEEEEEe---CCeEEEEE-CCeEEEEEcCCCeEEE-EEecc-------C--
Q 022387 160 IWDDHQSR----------CIGELSF-RSEVRSVKLR---RDRIIVVL-EQKIFVYNFADLKLLH-QIETI-------A-- 214 (298)
Q Consensus 160 iWD~~~~~----------~~~~~~~-~~~v~~v~~~---~~~l~v~~-~~~I~iwd~~~~~~i~-~~~~~-------~-- 214 (298)
|+|+...+ .+.-+.. ...|..++.- |..+.++. +|+|+-||++...... ....+ .
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 99987521 1111222 2356666553 34455554 6999999997522111 00000 0
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c-----------c------eE-eecccc-----------cceeE
Q 022387 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K-----------R------TK-FIMAHD-----------SRIAC 263 (298)
Q Consensus 215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~-----------~------~~-~~~~H~-----------~~V~~ 263 (298)
-...++.+++.- ..+||+ |..|-..++||... + + +. -..+|. ..++-
T Consensus 201 ielk~ltisp~r-p~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPSR-PYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCCC-CceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 012356777653 367775 99999999988320 0 0 11 112232 12567
Q ss_pred EEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 264 FALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 264 l~fspdg~-~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
++|+|+|. +|++-+-+ .|.+||+..++-...|
T Consensus 279 vtfnpNGtElLvs~~gE--hVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGE--HVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEECCCCcEEEEeeCCe--EEEEEeecCCCCceee
Confidence 78999995 55554433 5999999998876554
No 194
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.5e-09 Score=99.31 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=125.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
+...+.+.+|||||+.||..+. ..+.+|++++++......+ .+......|++++..++++.... ....|.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~La~~~~~~----g~~~I~ 270 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSKLAFALSKT----GSLNLY 270 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCEEEEEEcCC----CCcEEE
Confidence 3457899999999999886432 2367889887654333332 34445678899999888765322 124699
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+||+.+++..+.......+....|+++ .++...+ + .|.++|+.+++. +.+...........++ +|+..+++
T Consensus 271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~S--pDG~~Ia~ 347 (429)
T PRK03629 271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVS--SDGKFMVM 347 (429)
T ss_pred EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEEC--CCCCEEEE
Confidence 999998876554444456677888875 3444443 3 455556665543 3443322223334454 45577776
Q ss_pred ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCCCcE
Q 022387 234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTL 293 (298)
Q Consensus 234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~tg~~ 293 (298)
.+..++ .|.+++..+.....+... .......|+|||++|+.++.|+. .+.++++. |+.
T Consensus 348 ~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~ 409 (429)
T PRK03629 348 VSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRF 409 (429)
T ss_pred EEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCC
Confidence 555544 466688877766555432 23457789999999999998874 25666763 443
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.25 E-value=2.9e-10 Score=106.30 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=134.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
.|..++|-|||+.|+.+.++.+.|||...+..+-..+. |...+.+++++.++..+|..+ .|+.|.+|.-+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~-------aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCC-------CceeEEEeccccc
Confidence 78999999999999999899989999988887666665 678899999999998887765 7899999986432
Q ss_pred cEEEEeecCCceEEEEEeC--CeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387 167 RCIGELSFRSEVRSVKLRR--DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (298)
Q Consensus 167 ~~~~~~~~~~~v~~v~~~~--~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~ 244 (298)
. +....+...|-|+.|+| ..++.|.=+..-+|...+... ..+.....++..++..||+++|. |..||+|.|.
T Consensus 86 G-~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V----~K~kss~R~~~CsWtnDGqylal-G~~nGTIsiR 159 (1081)
T KOG1538|consen 86 G-ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV----SKHKSSSRIICCSWTNDGQYLAL-GMFNGTISIR 159 (1081)
T ss_pred c-eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhH----HhhhhheeEEEeeecCCCcEEEE-eccCceEEee
Confidence 2 33556667899999998 455556557788887653322 22333456778888888999997 9999999997
Q ss_pred EcCCcceEee---cccccceeEEEECCCC-----CEEEEEeCCCCEEEEEE
Q 022387 245 HYASKRTKFI---MAHDSRIACFALTQDG-----QLLATSSTKGTLVRIFN 287 (298)
Q Consensus 245 ~~~~~~~~~~---~~H~~~V~~l~fspdg-----~~lAt~S~Dgt~IrIWd 287 (298)
+...++-..+ -+.+++|++|+|+|.. ..+|...+..| +-.+.
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~ 209 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQ 209 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEE
Confidence 6554432222 2466778888887752 24444444444 43333
No 196
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=8.3e-10 Score=94.88 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=108.5
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc----EEEEee-cCCceEEEEEe-C---CeEEEEE-CCe
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLR-R---DRIIVVL-EQK 195 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~----~~~~~~-~~~~v~~v~~~-~---~~l~v~~-~~~ 195 (298)
|..-+..+.+.|.++.+|+++ .|++|+|||.+... +....+ +.+.|..+.|- + +.+++|. |++
T Consensus 12 h~DlihdVs~D~~GRRmAtCS-------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCS-------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred CcceeeeeeecccCceeeecc-------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 344467788889999999998 78999999975432 333444 44688888884 3 3344443 689
Q ss_pred EEEEEcC---------CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-------------------
Q 022387 196 IFVYNFA---------DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA------------------- 247 (298)
Q Consensus 196 I~iwd~~---------~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~------------------- 247 (298)
+.||.=. ......++......+.-+.|++..-|..+|+ .+.||+++||+.-
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-ASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-eccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9999741 1223334444445566677777777788884 8888888887610
Q ss_pred ----------------------------------------------Cc---ceEeecccccceeEEEECCC----CCEEE
Q 022387 248 ----------------------------------------------SK---RTKFIMAHDSRIACFALTQD----GQLLA 274 (298)
Q Consensus 248 ----------------------------------------------~~---~~~~~~~H~~~V~~l~fspd----g~~lA 274 (298)
.+ .+.++..|..+|+.|+|.|+ ..+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 00 11245678899999999997 36899
Q ss_pred EEeCCCCEEEEEECCC
Q 022387 275 TSSTKGTLVRIFNTLD 290 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~t 290 (298)
+++.|| ||||.+..
T Consensus 244 vA~kDg--v~I~~v~~ 257 (361)
T KOG2445|consen 244 VATKDG--VRIFKVKV 257 (361)
T ss_pred EeecCc--EEEEEEee
Confidence 999998 89999884
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.23 E-value=1.6e-09 Score=93.61 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=138.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC-eEEEEEcCCCc-eEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~-gi~vw~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
..+|+|.+|++|++.+|++-+. -+-||.+...+ ......+. |+..+..++|.+..+.+++++ .|+...||
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs-------~drnayVw 82 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS-------HDRNAYVW 82 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc-------CCCCcccc
Confidence 3589999999999999999884 57899886655 32222222 788899999999999999888 78999999
Q ss_pred eCCC-Cc---EEEEeecCCceEEEEEeCC--eEEEEEC-CeEEEEEcCCCeEEEEEeccCCCc--ceEEEEeCCCCeEEE
Q 022387 162 DDHQ-SR---CIGELSFRSEVRSVKLRRD--RIIVVLE-QKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLV 232 (298)
Q Consensus 162 D~~~-~~---~~~~~~~~~~v~~v~~~~~--~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~--~~~~~s~~~d~~~la 232 (298)
.... +. .+..+.++..++++.|+++ .+++... ..|.||=++..+--..-+.-..|+ .+.++++++++.+||
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 9843 32 3445677888999999874 5555543 577777664332211111111121 245666777778888
Q ss_pred EecCCCceEEEEEc-----CCcc--------------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 233 CPGLQKGQVRVEHY-----ASKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 233 ~sGs~dg~v~i~~~-----~~~~--------------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+ |+.|+.++|... +.++ +.++....+-|..+.|+|+|..||=.+.|.+ |.+=|....
T Consensus 163 a-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p 238 (361)
T KOG1523|consen 163 A-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP 238 (361)
T ss_pred c-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence 5 999999999542 2211 1133344567999999999999999999999 888886654
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.1e-09 Score=100.99 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=133.1
Q ss_pred CCCCeEEEEEcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 84 PPPTLLHISFNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
++...+.|..+|||+|+. +|.- -.|++||+......+.+.+. ...+...-++-+-...++.. .|++|.+-
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD-ae~V~feiLsDD~SK~v~L~-------~DR~IefH 121 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD-AEVVDFEILSDDYSKSVFLQ-------NDRTIEFH 121 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc-ccceeEEEeccchhhheEee-------cCceeeeh
Confidence 444677899999999855 5544 45899999988887777761 22223222222222233333 34555432
Q ss_pred eCCCCcEEEEeecCCceEEEEE---eCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 162 DDHQSRCIGELSFRSEVRSVKL---RRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 162 D~~~~~~~~~~~~~~~v~~v~~---~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
.- ......+..+.....+.+ +-+.++++....|+-+++..+.-+..|......+.+|.++.- +.+||+ |..+
T Consensus 122 ak--~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~--hgLla~-Gt~~ 196 (703)
T KOG2321|consen 122 AK--YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE--HGLLAC-GTED 196 (703)
T ss_pred hh--cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc--cceEEe-cccC
Confidence 21 111222222223333443 446777778889999999999999888887777777777664 478886 9999
Q ss_pred ceEEEEEcCCcceE-------eeccccc-----ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 239 GQVRVEHYASKRTK-------FIMAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 239 g~v~i~~~~~~~~~-------~~~~H~~-----~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
|.|..||-..+... .+..|.+ .|++|.|+.||-.+|.|..+|. |.|+|+++.+.+
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl 263 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPL 263 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCce
Confidence 99999998765421 2233433 4999999999999999999999 999999987654
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.22 E-value=1.3e-09 Score=102.14 Aligned_cols=202 Identities=14% Similarity=0.111 Sum_probs=125.4
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC-------
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------- 152 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 152 (298)
..+|+..|+||+|+.||+.+|+|+.|. +.||+-+--+. .... |+..+.++.+.+-...++.++-++-..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkYS--H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKYS--HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccccce-eeec--cCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 457889999999999999999999866 66997543322 1222 444444444433223333322221111
Q ss_pred -------------------------CCCCeEEEEeCCCCcEEEEee---cCCceEEEEEeCC-------eEEEEE-CCeE
Q 022387 153 -------------------------YPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD-------RIIVVL-EQKI 196 (298)
Q Consensus 153 -------------------------~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~-------~l~v~~-~~~I 196 (298)
..+|+|.|=+....+.+..-. -+++|.+++|++. .+.++. +.++
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 134555554432222222111 2358999999763 233332 3677
Q ss_pred EEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387 197 FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS 276 (298)
Q Consensus 197 ~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~ 276 (298)
.+|.+.. +.|.+-+.-. ..-++++.-++|.++.+ |+.||.+.++..+.-.+-++-..+.-|++|+..|++++.+.|
T Consensus 206 SFy~LsG-~~Igk~r~L~--FdP~CisYf~NGEy~Li-GGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 206 SFYQLSG-KQIGKDRALN--FDPCCISYFTNGEYILL-GGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred EEEEecc-eeecccccCC--CCchhheeccCCcEEEE-ccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 7777643 3222212111 12234445555688876 899999999988877777777778889999999999999999
Q ss_pred eCCCCEEEEEECCC
Q 022387 277 STKGTLVRIFNTLD 290 (298)
Q Consensus 277 S~Dgt~IrIWd~~t 290 (298)
..||| |--|++..
T Consensus 282 CqDGT-iACyNl~f 294 (1081)
T KOG1538|consen 282 CQDGT-IACYNLIF 294 (1081)
T ss_pred EccCe-eehhhhHH
Confidence 99999 88887653
No 200
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=6.2e-09 Score=97.81 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=123.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
++..+.+.+|+|||+.||..+. + .+.+|++.+++......+ .+......+++++..+++....+ ....|.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~----g~~~Iy 275 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRD----GNPEIY 275 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCC----CCceEE
Confidence 4557899999999999997763 2 277889887665333332 33444567888888877654321 234699
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+||+.+++...............|+++ .++...+ + .|.++|+.+++. +.+..+.......++++ |+..+++
T Consensus 276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~ 352 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSP--DGKKIAM 352 (433)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECC--CCCEEEE
Confidence 999998875443333334456778775 4555543 2 477777766553 33332222233345554 5577776
Q ss_pred ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCC
Q 022387 234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDG 291 (298)
Q Consensus 234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg 291 (298)
....++ .|.+|+..++....+. +.......+|+|||++|+..+.++ ..|.++++..+
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 433443 5777998777666554 333456789999999988877642 23777777543
No 201
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=2.6e-08 Score=93.70 Aligned_cols=201 Identities=7% Similarity=-0.015 Sum_probs=124.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC----CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTD----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
.+...+.+.+|+|||+.||..+. ..+.+|++.+++......+ .+.+....+++++..+++....+ ....|
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~~~----g~~~I 272 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF--PGMTFAPRFSPDGRKVVMSLSQG----GNTDI 272 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC--CCcccCcEECCCCCEEEEEEecC----CCceE
Confidence 44568999999999999887653 2377999987765322222 44555667888888877665321 13458
Q ss_pred EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387 159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la 232 (298)
.+||+.+++...............|+++ .++...+ ..|.++|+.+++. +.+..+........++ +|+..|+
T Consensus 273 y~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia 349 (435)
T PRK05137 273 YTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWS--PRGDLIA 349 (435)
T ss_pred EEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEEC--CCCCEEE
Confidence 8889988766443333334555778765 4555543 3688889866544 3443322223334444 5557777
Q ss_pred EecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC-----CEEEEEECCCCcE
Q 022387 233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTL 293 (298)
Q Consensus 233 ~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg-----t~IrIWd~~tg~~ 293 (298)
+.....+ .|.+++...+....+. +...+..+.|+|||++|+..+.++ ..+.+.|+..++.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 6444344 5666777665544443 233578899999999988766542 2377888766543
No 202
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.16 E-value=1.3e-09 Score=99.75 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=94.6
Q ss_pred CCCeEEEEeCCCCcEEEEeec-----CCceEEEEEeC--C-eEEEE-ECCeEEEEEcCC--------------CeEEE--
Q 022387 154 PLNKVMIWDDHQSRCIGELSF-----RSEVRSVKLRR--D-RIIVV-LEQKIFVYNFAD--------------LKLLH-- 208 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~-----~~~v~~v~~~~--~-~l~v~-~~~~I~iwd~~~--------------~~~i~-- 208 (298)
..+.|.+.|....+..+.+.. ...|+++.|-+ + .++++ .++.+.+||..- +..+.
T Consensus 193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 346688777665332222221 25788888853 2 33333 468888887631 11111
Q ss_pred EEec--cCCCcc--------eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEe
Q 022387 209 QIET--IANPKG--------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSS 277 (298)
Q Consensus 209 ~~~~--~~~~~~--------~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S 277 (298)
+-+. ..+|+. +..|++.+|+.+||+ -+.||.++|+++....+. .++..-+...||+|||||+|+|||+
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEE-EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 1111 112322 234455567899996 799999999999876654 6677778999999999999999999
Q ss_pred CCCCEEEEEECCCCcEEEe
Q 022387 278 TKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 278 ~Dgt~IrIWd~~tg~~l~~ 296 (298)
+|.- |.||.+..++++..
T Consensus 352 EDDL-VtVwSf~erRVVAR 369 (636)
T KOG2394|consen 352 EDDL-VTVWSFEERRVVAR 369 (636)
T ss_pred Ccce-EEEEEeccceEEEe
Confidence 9997 99999999988753
No 203
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.2e-08 Score=93.93 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=112.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
.+...+.+.+|+|||+.||..+. ++ +.+||+.+++......+ .+......|++++..+++... .++..
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~--~g~~~~~~~SPDG~~la~~~~------~~g~~ 264 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF--KGSNSAPAWSPDGRTLAVALS------RDGNS 264 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEc------cCCCc
Confidence 34567899999999999987764 32 77889987765433332 345566788899988877543 23445
Q ss_pred EEE--eCCCCcEEEEeec-CCceEEEEEeCC--eEEEEEC--CeEEEE--EcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387 159 MIW--DDHQSRCIGELSF-RSEVRSVKLRRD--RIIVVLE--QKIFVY--NFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 159 ~iW--D~~~~~~~~~~~~-~~~v~~v~~~~~--~l~v~~~--~~I~iw--d~~~~~~i~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
.|| |...+.. ..+.. ........|+++ .++...+ +...+| ++.+++. ..+..........+++ +|+.
T Consensus 265 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~S--pDG~ 340 (427)
T PRK02889 265 QIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRIS--PDGK 340 (427)
T ss_pred eEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEEC--CCCC
Confidence 555 5555543 33332 233455678775 4444443 445555 4444432 2222222222233444 4557
Q ss_pred EEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC
Q 022387 230 VLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (298)
Q Consensus 230 ~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg 280 (298)
++++....+| .|.+|++..+....+..+ .......|+|||++|+.++.++
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCCCCEEEEEEecC
Confidence 7776444444 577799887766655433 3457889999999999888666
No 204
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.14 E-value=1.5e-09 Score=97.66 Aligned_cols=209 Identities=11% Similarity=0.080 Sum_probs=133.5
Q ss_pred CcccCCCCCCeEEEEEcCCC--CEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 78 ESTSSSPPPTLLHISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 78 ~~~~~~~~~~V~~v~fs~dg--~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
..+...|..+|.++.|+|.. ..+++..++++|.-|++........... .......+.+..+...++++. .
T Consensus 227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~-------~ 299 (498)
T KOG4328|consen 227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD-------N 299 (498)
T ss_pred eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee-------c
Confidence 34456788899999999954 3455555666999888765422222210 012223333344444444444 3
Q ss_pred CCeEEEEeCCCCcE-EEEeecC-CceEEEEEeC---CeEEEE-ECCeEEEEEcCCCeEEE----EEeccCCCcceEEEEe
Q 022387 155 LNKVMIWDDHQSRC-IGELSFR-SEVRSVKLRR---DRIIVV-LEQKIFVYNFADLKLLH----QIETIANPKGLCAVSQ 224 (298)
Q Consensus 155 d~~v~iWD~~~~~~-~~~~~~~-~~v~~v~~~~---~~l~v~-~~~~I~iwd~~~~~~i~----~~~~~~~~~~~~~~s~ 224 (298)
-|...+||.+++.. ...+..+ ..|..++++| ..++.+ .+++.+|||++....-. ..-.|...+.+..|||
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP 379 (498)
T ss_pred ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence 36789999998654 4344443 4899999986 345554 36899999997644322 2233666777778877
Q ss_pred CCCCeEEEEecCCCceEEEEEcC----CcceEeeccccc------ceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYA----SKRTKFIMAHDS------RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~----~~~~~~~~~H~~------~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
++ ..|++ -..|..|+|||.. ..+....-.|.. ..---+|.|+..+++.|-.-.. |-|+|-..|+.+
T Consensus 380 s~--gtl~T-T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~-IDv~~~~~~q~v 455 (498)
T KOG4328|consen 380 SG--GTLLT-TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRP-IDVFDGNGGQMV 455 (498)
T ss_pred CC--CceEe-eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcc-eeEEcCCCCEEe
Confidence 65 44664 6888999999984 222221112221 1334479999999999999998 999998888877
Q ss_pred Eec
Q 022387 295 QEG 297 (298)
Q Consensus 295 ~~~ 297 (298)
.++
T Consensus 456 ~el 458 (498)
T KOG4328|consen 456 CEL 458 (498)
T ss_pred eec
Confidence 663
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.13 E-value=1.7e-08 Score=84.36 Aligned_cols=153 Identities=10% Similarity=0.135 Sum_probs=104.9
Q ss_pred EEEEEcCCCCEEEEEcC-C----------eEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC
Q 022387 89 LHISFNQDHGCFAAGTD-H----------GFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs~-~----------gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (298)
..+.|+++|++|++-.. + ...||.++... ......+...+.+..+.|.++++.++++.|. .++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~-----~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS-----MPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc-----CCc
Confidence 35789999998774332 1 13466663322 2222333124568999999999999888753 467
Q ss_pred eEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.|.+||++ ++.+.++. ...+..+.|+|+ .+++++ .|.|.+||+++.+.+.++... .+..+.++|||.+
T Consensus 84 ~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRY 157 (194)
T ss_pred ccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCE
Confidence 99999996 55555554 346778999885 444443 368999999999988776532 3466777788899
Q ss_pred EEEecCC-----CceEEEEEcCCcceE
Q 022387 231 LVCPGLQ-----KGQVRVEHYASKRTK 252 (298)
Q Consensus 231 la~sGs~-----dg~v~i~~~~~~~~~ 252 (298)
++++.+. |..++||++..+.+.
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred EEEEEeccceeccccEEEEEecCeEeE
Confidence 9876553 888999999876554
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=99.59 Aligned_cols=178 Identities=12% Similarity=0.026 Sum_probs=121.6
Q ss_pred EEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCce
Q 022387 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV 178 (298)
Q Consensus 99 ~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v 178 (298)
++++.+++.+.|.+.. ++....... |.+.+.+-.|.+++..+.++| .||.|++|...-.---.-.++..+|
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~sv~A-H~~A~~~gRW~~dGtgLlt~G-------EDG~iKiWSrsGMLRStl~Q~~~~v 148 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVERSISA-HAAAISSGRWSPDGAGLLTAG-------EDGVIKIWSRSGMLRSTVVQNEESI 148 (737)
T ss_pred EEEEcCCceEEEeccc-chhhhhhhh-hhhhhhhcccCCCCceeeeec-------CCceEEEEeccchHHHHHhhcCcee
Confidence 4444444445554422 222112222 677777778888888888887 7899999985432111123455689
Q ss_pred EEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc
Q 022387 179 RSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA 256 (298)
Q Consensus 179 ~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~ 256 (298)
.|+.|.++ .++.|..+.+.|=-+.-...+.+.+.|...+.+++ +++...+++ +|+.|=..+|||-....+.+-..
T Consensus 149 ~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~--W~~~s~lI~-sgGED~kfKvWD~~G~~Lf~S~~ 225 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLS--WSTQSNIIA-SGGEDFRFKIWDAQGANLFTSAA 225 (737)
T ss_pred EEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEee--cCcccccee-ecCCceeEEeecccCcccccCCh
Confidence 99999764 56666678888887766666667788876655555 444557777 69999999999988887777788
Q ss_pred cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 257 H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
|.-+|++|+|+|| +.+|.+|.. ..|+=..+.|
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~n--t~R~~~p~~G 257 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSYN--TARFSSPRVG 257 (737)
T ss_pred hccceeeeeeccc-cceeeeeee--eeeecCCCcc
Confidence 9999999999998 888888755 2664444434
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.2e-09 Score=95.65 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=111.6
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc-EEEEeecCCceEEEEEeCCeEE--EEECCeEEEEEcCCCeEE
Q 022387 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSFRSEVRSVKLRRDRII--VVLEQKIFVYNFADLKLL 207 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-~~~~~~~~~~v~~v~~~~~~l~--v~~~~~I~iwd~~~~~~i 207 (298)
.++++.+++..+++.+ .||++|||++-+.. ...+..++.+|.++.|+++..+ ..+.+..+||+.+++..+
T Consensus 148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence 6677777878888877 78999999965544 4445667889999999987633 334569999999998776
Q ss_pred EEEeccC--CCcceEEEEeCC--CCeEEEEecCCCceEEEEEcCCc------ceEeecccccceeEEEECCCCCEEEEEe
Q 022387 208 HQIETIA--NPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYASK------RTKFIMAHDSRIACFALTQDGQLLATSS 277 (298)
Q Consensus 208 ~~~~~~~--~~~~~~~~s~~~--d~~~la~sGs~dg~v~i~~~~~~------~~~~~~~H~~~V~~l~fspdg~~lAt~S 277 (298)
.+..... .....|.|+.++ +..++|+.-..-|.|+.++.... +..+...-...|++++.|+||+++|-|+
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 6654322 223467777665 23456654455566666554421 1122223345799999999999999999
Q ss_pred CCCCEEEEEECCCCcEEE
Q 022387 278 TKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 278 ~Dgt~IrIWd~~tg~~l~ 295 (298)
.||. |-|++..+.++++
T Consensus 301 ~dGs-Vai~~~~~lq~~~ 317 (398)
T KOG0771|consen 301 MDGS-VAIYDAKSLQRLQ 317 (398)
T ss_pred cCCc-EEEEEeceeeeeE
Confidence 9999 9999999887764
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.08 E-value=1.4e-07 Score=86.62 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=115.7
Q ss_pred EEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387 89 LHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~ 167 (298)
..+.|+|||+++.+.+.+| +.++|+.+.+.+.+... ......+.++.++.+++++.. .++++.++|.++.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLE 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEec------CCCceeEecccccc
Confidence 4477999999988887755 77999999988766664 566777888899998887762 46889999998887
Q ss_pred EEEEeecC--------CceEEEEE--------------------------------------------eCC--eEEEEE-
Q 022387 168 CIGELSFR--------SEVRSVKL--------------------------------------------RRD--RIIVVL- 192 (298)
Q Consensus 168 ~~~~~~~~--------~~v~~v~~--------------------------------------------~~~--~l~v~~- 192 (298)
.+.++... +++.++.. +++ +++++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 76654321 12222211 111 233332
Q ss_pred -CCeEEEEEcCCCeEEEEEeccCCCc----------------------------------------------------ce
Q 022387 193 -EQKIFVYNFADLKLLHQIETIANPK----------------------------------------------------GL 219 (298)
Q Consensus 193 -~~~I~iwd~~~~~~i~~~~~~~~~~----------------------------------------------------~~ 219 (298)
++.|-++|..+++.+..+.....+. .-
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 3577777777666555443211100 01
Q ss_pred EEEEeCCCCeEEEEe---cCCCceEEEEEcCCcce-Eeecccc-cceeEEEECCCCCEEEEEeCCCC-EEEEEECCCCcE
Q 022387 220 CAVSQGVGSLVLVCP---GLQKGQVRVEHYASKRT-KFIMAHD-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTL 293 (298)
Q Consensus 220 ~~~s~~~d~~~la~s---Gs~dg~v~i~~~~~~~~-~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt-~IrIWd~~tg~~ 293 (298)
+.+..+|++.++.+. +...+.|.+.|.++.+. .++.... ..+..+.|++||+++-.+..|+. .|.|+|..|.++
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 122334455566554 45567888888776543 3444322 35999999999985555544333 499999999999
Q ss_pred EEec
Q 022387 294 LQEG 297 (298)
Q Consensus 294 l~~~ 297 (298)
++++
T Consensus 352 ~~~i 355 (369)
T PF02239_consen 352 KKRI 355 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1e-09 Score=99.44 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred EeccCCCcceEEEEeCC-CCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 210 IETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 210 ~~~~~~~~~~~~~s~~~-d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+++|.+...+-.+++-+ ...+++ ||+.-|.|.||+.++.++. .+.+-...|+||.=+|--..|||+|-|.. ||||-
T Consensus 387 YKGHrN~~TVKgVNFfGPrsEyVv-SGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~D-VKIWT 464 (559)
T KOG1334|consen 387 YKGHRNSRTVKGVNFFGPRSEYVV-SGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHD-VKIWT 464 (559)
T ss_pred hcccccccccceeeeccCccceEE-ecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccc-eeeec
Confidence 66776655554555433 345555 7999999999999987755 45665569999999999999999999999 99998
Q ss_pred CCCCc
Q 022387 288 TLDGT 292 (298)
Q Consensus 288 ~~tg~ 292 (298)
-.+.+
T Consensus 465 P~~~e 469 (559)
T KOG1334|consen 465 PLTAE 469 (559)
T ss_pred CCccc
Confidence 75443
No 210
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=2.2e-09 Score=93.20 Aligned_cols=195 Identities=15% Similarity=0.068 Sum_probs=127.1
Q ss_pred EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (298)
Q Consensus 90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~ 169 (298)
-++|||+|+|+|+.++-.+.|-|..+.+....... -..+..+.|..+...+..+. +.++.|.+|++...+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~------yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA------YKDPKVQVWSLVQPEWY 84 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeee------eccceEEEEEeecceeE
Confidence 37899999999999987777777777653211111 23455667766665544333 25688999999998888
Q ss_pred EEeecCC-ceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC--------
Q 022387 170 GELSFRS-EVRSVKLRRDR--IIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-------- 236 (298)
Q Consensus 170 ~~~~~~~-~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs-------- 236 (298)
..++..+ .+.++.|+++. ++..+ +-+|.+|.+.+.+... ++-.......++|++ |+++.|+...
T Consensus 85 ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~--dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 85 CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHP--DGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECC--CCceeeeeecccHHHHHH
Confidence 8887654 67788999875 33332 3689999998776533 222222233445544 4466554211
Q ss_pred --------------------------CCc-eEEEEEcCCcceEeecccc-cceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 237 --------------------------QKG-QVRVEHYASKRTKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 237 --------------------------~dg-~v~i~~~~~~~~~~~~~H~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
-|| .+.+||.-.+ .+.+..|. -.|..++|+|.+++||.||.|+. +||-+-
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le-ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh 239 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE-YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNH 239 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh-heeeeeeeccceeEEEeccccceEEeeccchh-hhhhce
Confidence 134 4444775433 22333444 46999999999999999999999 999886
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
-+-+.+.||
T Consensus 240 ~tWk~f~ef 248 (447)
T KOG4497|consen 240 FTWKPFGEF 248 (447)
T ss_pred eeeeehhhh
Confidence 666555544
No 211
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-09 Score=97.78 Aligned_cols=209 Identities=18% Similarity=0.093 Sum_probs=143.9
Q ss_pred CcccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCC-CceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP-FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 78 ~~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
|..+++|+..|+.|.-+ -.+++.+++-+| +++|.... ....+...++ |.+.+..++.+.++.++.+++. .
T Consensus 2 yeksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d------~ 74 (558)
T KOG0882|consen 2 YEKSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED------P 74 (558)
T ss_pred cchhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC------c
Confidence 66789999999887655 357899999877 67997665 4455555553 4555566666677766666551 3
Q ss_pred CCeEEEEeCCCCcEEEEe--ecCCceEEEEEeCC----eEEEEE--CCeEEEEEcC-CC-eEEEEEeccCCCcceEEEEe
Q 022387 155 LNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRD----RIIVVL--EQKIFVYNFA-DL-KLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~--~~~~~v~~v~~~~~----~l~v~~--~~~I~iwd~~-~~-~~i~~~~~~~~~~~~~~~s~ 224 (298)
|+.+|++|+++-..+.-+ .+-....++..++. .+++.. ++.|.++|-. +. +.....+-|..++..+.+.+
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec
Confidence 799999999875544333 33233333333333 333332 4799999984 33 33333344888888888888
Q ss_pred CCCCeEEEEecCCCceEEEEEcCC------cc----------eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYAS------KR----------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~~------~~----------~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
.+|. .+ |+...|.|..|..+. .. +..+...+....++.|+|+|..+++-+.|.+ ||++++
T Consensus 155 a~Ds--~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~ 230 (558)
T KOG0882|consen 155 AGDS--AV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVF 230 (558)
T ss_pred cccc--ee-eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEe
Confidence 7643 22 478889999998762 11 1133455678999999999999999999998 999999
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
++|++++++
T Consensus 231 KtGklvqei 239 (558)
T KOG0882|consen 231 KTGKLVQEI 239 (558)
T ss_pred ccchhhhhh
Confidence 999998765
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.03 E-value=5e-09 Score=96.06 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=119.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|.+.|.+-.|+|||.=|.++++|| |++|.-.-.-...... .+..+.++.|.++++.++.+.| +.+.|
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q--~~~~v~c~~W~p~S~~vl~c~g--------~h~~I 170 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ--NEESIRCARWAPNSNSIVFCQG--------GHISI 170 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhh--cCceeEEEEECCCCCceEEecC--------CeEEE
Confidence 45677899999999999999999988 6799754321111111 2568899999999888877764 34555
Q ss_pred EeCCCCcEEEEee-cCCceEEEEEeCCeEE--EEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRII--VVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~~~~~~~~~~~-~~~~v~~v~~~~~~l~--v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
=-+..+..+...+ +.+-|.++.|++..-+ .+++ -+.++||-.. +.+.+-..|..++.+++++++ ..+++ |+
T Consensus 171 KpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd---~~~~v-~S 245 (737)
T KOG1524|consen 171 KPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE---KDYLL-WS 245 (737)
T ss_pred eecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc---cceee-ee
Confidence 5555544444444 5578999999875433 3333 4899999764 444455667778777777665 34443 55
Q ss_pred CCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
.+ +++ .-+...+.|..++||+||..+|.|...|.+|
T Consensus 246 ~n-t~R----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 246 YN-TAR----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLI 281 (737)
T ss_pred ee-eee----------ecCCCccceEEEEEcCCCceeeccccCceEE
Confidence 43 222 1123457899999999999999999888733
No 213
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.03 E-value=1.5e-07 Score=87.67 Aligned_cols=201 Identities=10% Similarity=0.068 Sum_probs=122.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
+...+...+|+|||++||.... + .+.+|++.+++......+ .+......+++++..+++..... ....|.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~~~spDg~~l~~~~~~~----~~~~i~ 261 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAPAFSPDGSKLAVSLSKD----GNPDIY 261 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEECCC----CCccEE
Confidence 3446888999999999987653 2 377899988754333332 34455577888888777655322 235699
Q ss_pred EEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 160 IWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 160 iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
+||+.+++......+........|+++ .++...+ ..|.++|+.+++. ..+..+........+++ ++.++++
T Consensus 262 ~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~sp--dg~~i~~ 338 (417)
T TIGR02800 262 VMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSP--DGDLIAF 338 (417)
T ss_pred EEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECC--CCCEEEE
Confidence 999988765433333333445567654 4555443 2688888876654 33433333333445544 5567776
Q ss_pred ecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCCCcEEE
Q 022387 234 PGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQ 295 (298)
Q Consensus 234 sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~tg~~l~ 295 (298)
+....+ .|.+++...+....+..+ ......+|+|||++|+..+.++. .+.+.+. +|+..+
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred EEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence 444333 566688776655544433 23456789999999988877653 2555553 344433
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=3.9e-08 Score=84.15 Aligned_cols=190 Identities=9% Similarity=0.058 Sum_probs=133.1
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEcCCe-EEEEEcCCCc--eEEEEeeecCCceEEEEEecCC-CEEEEEeCCCCCCCCC
Q 022387 81 SSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL 155 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~-dg~~lasgs~~g-i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d 155 (298)
.....+++++..|+. |-++|.+.+-|+ ..||+++++. .+.+.-++|++.+.-+++...+ +.+|.+| .|
T Consensus 146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg-------aD 218 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG-------AD 218 (364)
T ss_pred ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec-------CC
Confidence 345567999999997 667888888776 5699999862 2333334478888888887643 4566666 68
Q ss_pred CeEEEEeCCCCcEEE-Eeec---CCceEEEEEeCC---eEEEE--ECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeC
Q 022387 156 NKVMIWDDHQSRCIG-ELSF---RSEVRSVKLRRD---RIIVV--LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQG 225 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~-~~~~---~~~v~~v~~~~~---~l~v~--~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~ 225 (298)
|.||+||++..+.-. .++- +.+...++++++ .++.. .+..|.|.|++. ..++.+++.|...+..++..++
T Consensus 219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh 298 (364)
T KOG0290|consen 219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH 298 (364)
T ss_pred CcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC
Confidence 999999998754221 1221 335677777753 44432 247999999975 4677889999999988998887
Q ss_pred CCCeEEEEecCCCceEEEEEcCCcceE------eecccccceeEEEECCC-CCEEEEEeCC
Q 022387 226 VGSLVLVCPGLQKGQVRVEHYASKRTK------FIMAHDSRIACFALTQD-GQLLATSSTK 279 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i~~~~~~~~~------~~~~H~~~V~~l~fspd-g~~lAt~S~D 279 (298)
... .|+ +++.|-.+.|||+...... ......+.|+.|.|++. +.+||.+...
T Consensus 299 S~~-hic-taGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 299 SSS-HIC-TAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCc-eee-ecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 643 444 5899999999998754321 11224578999999964 7899988633
No 215
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.02 E-value=4e-09 Score=93.64 Aligned_cols=178 Identities=14% Similarity=0.189 Sum_probs=121.8
Q ss_pred CCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCC---c----eEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 85 PPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPF---R----EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 85 ~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
..+|.++.|.+++. .||+|+. ..|+||-+... + ..+.-.+. |...+.++.+.++++.+|.++ +
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D 85 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------D 85 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------C
Confidence 35899999999877 9999886 55999976332 2 22222221 677788888888888887776 5
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
+++|.+|-...-... ...- .... +. +.....+.+.+|...+ ..+++.+++.+++ +
T Consensus 86 ~g~v~lWk~~~~~~~-----~~d~-e~~~---------~k-------e~w~v~k~lr~h~~di--ydL~Ws~d~~~l~-s 140 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIF-----DADT-EADL---------NK-------EKWVVKKVLRGHRDDI--YDLAWSPDSNFLV-S 140 (434)
T ss_pred CceEEEEEecCcCCc-----cccc-hhhh---------Cc-------cceEEEEEecccccch--hhhhccCCCceee-e
Confidence 699999986541100 0000 0000 00 0011122334444433 4455566668888 5
Q ss_pred cCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 235 GLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
|+.|..+++||.....+. .+..|...|.-++|.|-.+++++-|.|.. .+++.+...++++
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~-~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH-PEGFSAKLKQVIK 201 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc-cceeeeeeeeeee
Confidence 999999999999887654 78899999999999999999999999997 8888887766553
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=3.3e-08 Score=92.83 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=108.6
Q ss_pred eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC
Q 022387 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (298)
Q Consensus 107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~ 186 (298)
.+.+||.+......... +...+....|++++..+++++.++ .+.+|.+||+.+++......+......+.|+++
T Consensus 185 ~i~i~d~dg~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~~----~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFEN----KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCceEecc--CCCccccceEcCCCCEEEEEEecC----CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 36677776544322111 345577788999999998877432 235799999988764333333344556788876
Q ss_pred --eEEEEE--CCe--EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeecccc
Q 022387 187 --RIIVVL--EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD 258 (298)
Q Consensus 187 --~l~v~~--~~~--I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~ 258 (298)
.++++. ++. |.+||+.+++. ..+..+........++ +|+..|++++..+|...||++.. .....+ .|.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS--PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC
Confidence 455543 354 44556655543 4555444434444554 45576666566778888877643 323333 444
Q ss_pred cceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 259 ~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
. .+++|||||++||..+.++ |.+||+.+|+..
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~ 366 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTE 366 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeE
Confidence 4 5678999999999988765 445999988653
No 217
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.01 E-value=2.4e-07 Score=86.92 Aligned_cols=198 Identities=13% Similarity=0.085 Sum_probs=119.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC-C---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTD-H---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~-~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
.+...+...+|+|||++||..+. + .+.+|++++++......+ .+......|++++..+++....+ .+..|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~--~g~~~~~~~SpDG~~la~~~~~~----g~~~I 269 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF--EGLNGAPAWSPDGSKLAFVLSKD----GNPEI 269 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC--CCCcCCeEECCCCCEEEEEEccC----CCceE
Confidence 34457889999999999887653 2 266788887754332222 33344567888888887655322 23468
Q ss_pred EEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387 159 MIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la 232 (298)
.+||+.+++...............|+++ .++...+ ..|.++|+.+++. ..+...........+++ |+..++
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Sp--dg~~i~ 346 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSA--DGKTLV 346 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECC--CCCEEE
Confidence 8999988765433333334455677764 4555443 3688888876664 33322222222334554 556777
Q ss_pred EecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCC
Q 022387 233 CPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLD 290 (298)
Q Consensus 233 ~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~t 290 (298)
+....+| .|.++++.++....+.. ........|+|||++|+-.+.++ ..|.++++..
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 6555555 45668887766554432 22333568999999998877543 2266667643
No 218
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.99 E-value=2.1e-08 Score=95.42 Aligned_cols=203 Identities=11% Similarity=0.057 Sum_probs=128.6
Q ss_pred CcccCCCCCCeEEEEEcCCC--CEEEEEcC-CeEEEEEcCCCce-----EEEEe------eecCCceEEEEEec-CCCEE
Q 022387 78 ESTSSSPPPTLLHISFNQDH--GCFAAGTD-HGFRIYNCDPFRE-----IFRRD------FERGGGIGVVEMLF-RCNIL 142 (298)
Q Consensus 78 ~~~~~~~~~~V~~v~fs~dg--~~lasgs~-~gi~vw~~~~~~~-----~~~~~------~~~~~~~~~~~~~~-~~~~~ 142 (298)
......|..+|+.+.|-++- .-|++++- ++|..|+++-... +.... +.....+..+.+.. +++.+
T Consensus 284 s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 284 SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence 34457888999999998643 23555554 5588998754321 00000 00012233444433 34455
Q ss_pred EEEeCCCCCCCCCCeEEEE---eCCCCc------EEEEeecCCceEEEEEeC---CeEEEEECCeEEEEEcC-CCeEEEE
Q 022387 143 ALVGGGPDPQYPLNKVMIW---DDHQSR------CIGELSFRSEVRSVKLRR---DRIIVVLEQKIFVYNFA-DLKLLHQ 209 (298)
Q Consensus 143 ~~~~~~~~~~~~d~~v~iW---D~~~~~------~~~~~~~~~~v~~v~~~~---~~l~v~~~~~I~iwd~~-~~~~i~~ 209 (298)
++++ ..|.|..= +.+... ......+.+.|.++.+++ ..++++++-+|+||.-. ...++..
T Consensus 364 iVGT-------e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~ 436 (555)
T KOG1587|consen 364 IVGT-------EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS 436 (555)
T ss_pred EEEc-------CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence 5544 44666552 222222 111233456888888665 56777778999999976 6666666
Q ss_pred EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc---ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
+..+...+..++.|+ -...+.+++..||.+.+||+... ++.+.+.+..+.+.+.|+++|+.||.|...|+ |+++
T Consensus 437 ~~~~~~~v~~vaWSp--trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~-~~~~ 513 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSP--TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGT-THIL 513 (555)
T ss_pred hhhccceeeeeEEcC--cCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCc-EEEE
Confidence 665544444445444 33444445899999999998754 45566667788899999999999999999999 9999
Q ss_pred ECCC
Q 022387 287 NTLD 290 (298)
Q Consensus 287 d~~t 290 (298)
++..
T Consensus 514 ~l~~ 517 (555)
T KOG1587|consen 514 KLSE 517 (555)
T ss_pred EcCc
Confidence 9864
No 219
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=3.1e-08 Score=91.78 Aligned_cols=148 Identities=13% Similarity=0.156 Sum_probs=110.4
Q ss_pred CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC----CceEEEEEe------C--------------C--eEEEEE
Q 022387 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR----SEVRSVKLR------R--------------D--RIIVVL 192 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~----~~v~~v~~~------~--------------~--~l~v~~ 192 (298)
..++|++. .||.+|+||..+++..+++... +...+..|. + + .++.++
T Consensus 5 ~~~~A~~~-------~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 5 LDYFALST-------GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred hheEeecC-------CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 34566666 5699999999999888776532 233333331 1 1 222233
Q ss_pred -CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC
Q 022387 193 -EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG 270 (298)
Q Consensus 193 -~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg 270 (298)
.|.|.+|++..+++-.++.+..++..+.++....+ ...+.|++.|+.+.+|+.+.+... .+++-...+.+++++|||
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 48999999999999889887666666666654433 333346899999999999988765 678888899999999999
Q ss_pred CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 271 QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+.|+++|. . |++||+++++++.+|
T Consensus 157 ~~l~~as~--~-ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 157 KILLTASR--Q-IKVLDIETKEVVITF 180 (541)
T ss_pred CEEEeccc--e-EEEEEccCceEEEEe
Confidence 99999974 3 999999999999887
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.1e-07 Score=89.35 Aligned_cols=176 Identities=12% Similarity=0.091 Sum_probs=109.1
Q ss_pred EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (298)
Q Consensus 108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~ 187 (298)
+.+||.+......... +...+....|+++++.+++++... ....|.+||+.+++......+.....+..|+++.
T Consensus 186 l~i~D~~g~~~~~lt~--~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 186 LQVADSDGYNPQTILR--SAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEECCCCCCceEeec--CCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 5567765443322222 244566677888898888876332 2357999999887764443444455567888753
Q ss_pred --EEEEE--C--CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeeccccc
Q 022387 188 --IIVVL--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDS 259 (298)
Q Consensus 188 --l~v~~--~--~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~ 259 (298)
+++.. + ..|++||+.+++. ..+..+.......++ ++|+..++++...+|. |.+++...+....+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 44332 2 3799999987764 344433332333444 4556777765555665 4445655555544443444
Q ss_pred ceeEEEECCCCCEEEEEeCCC---CEEEEEECCCCcE
Q 022387 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTL 293 (298)
Q Consensus 260 ~V~~l~fspdg~~lAt~S~Dg---t~IrIWd~~tg~~ 293 (298)
....++|||||++||..+.++ . |.+||+.+++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~ 372 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSV 372 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCe
Confidence 566789999999998875443 5 89999988764
No 221
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=2.4e-07 Score=87.45 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=116.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-Ce---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~-~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
+..+.+..|+|||++|+..+. ++ +.+|++.+++......+ .+......|++++..++++...+ ....|.+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~--~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~ 290 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF--PGINGAPRFSPDGKKLALVLSKD----GQPEIYV 290 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC--CCCcCCeeECCCCCEEEEEEeCC----CCeEEEE
Confidence 446778999999999887653 32 56778877654322222 23334567888998888765322 1235888
Q ss_pred EeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEe
Q 022387 161 WDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~s 234 (298)
+|+.+++...............|+++ .++...+ ..|.++|+.+++. ..+..........++++ |+..++++
T Consensus 291 ~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~Sp--DG~~l~~~ 367 (448)
T PRK04792 291 VDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITP--DGRSMIMV 367 (448)
T ss_pred EECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECC--CCCEEEEE
Confidence 89988765433333334556677765 4444443 3677778876654 23322222222334554 55677665
Q ss_pred cCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCC-C-EEEEEECCCCcEEE
Q 022387 235 GLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-T-LVRIFNTLDGTLLQ 295 (298)
Q Consensus 235 Gs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg-t-~IrIWd~~tg~~l~ 295 (298)
+..++...| ++..++....+.... ......|+|||++|+-.+.++ . .+.+++. +|+..+
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~ 430 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKA 430 (448)
T ss_pred EecCCceEEEEEECCCCCeEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceE
Confidence 665665555 566666555444321 223458999999888766543 2 2666676 454443
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.97 E-value=9.6e-07 Score=81.11 Aligned_cols=189 Identities=14% Similarity=0.164 Sum_probs=119.0
Q ss_pred CEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCce-EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387 98 GCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (298)
Q Consensus 98 ~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~ 174 (298)
++++ +-.+ +.+.|.|.++.+.+.+... .+.. ..+.+..+++++.+++ .|+.|.++|+.+++.+.++..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT--GGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC--CCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEec
Confidence 3443 3444 5688999999887766663 3444 3345567788888877 579999999999999999998
Q ss_pred CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEEEeccCCCc-----ceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387 175 RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (298)
Q Consensus 175 ~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~v~i~~ 245 (298)
......++++++ .++++. .+.+.++|.++.++++++.....+. ...++-..+....++++--..+.|.+-|
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 888888888764 555554 5899999999999999987653222 2233322222333333345567887777
Q ss_pred cCCc-ceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 246 YASK-RTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 246 ~~~~-~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
+... .+. .............|+|+|+||..+......|-++|.++++++.
T Consensus 157 y~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred eccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 6543 222 2333445678899999999887764433349999999998764
No 223
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=1.5e-09 Score=65.94 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=34.8
Q ss_pred ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 250 ~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
.+.++.+|.+.|++|+|+|++.+|||+|.|++ |+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence 35689999999999999999999999999999 99997
No 224
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=7.1e-09 Score=95.44 Aligned_cols=208 Identities=12% Similarity=0.151 Sum_probs=133.2
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCC--------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
..+.|...|+.++|.+....|++++.++ +++|+++.. +.++++.. |.+.|.++++...+..+..++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeec----
Confidence 4467788999999999999999999977 679998321 22333332 889999999988888777776
Q ss_pred CCCCCCeEEEEeCCC------Cc---EE-EEe-ecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC
Q 022387 151 PQYPLNKVMIWDDHQ------SR---CI-GEL-SFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 151 ~~~~d~~v~iWD~~~------~~---~~-~~~-~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
.||+|+.|++-. .. .+ ..+ .+...|+.+.++. ++++.|. +++++.|+.....+ .+|......
T Consensus 364 ---~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~ 439 (577)
T KOG0642|consen 364 ---IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH 439 (577)
T ss_pred ---cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc
Confidence 789999995421 11 11 122 3345787888874 5666664 79999999876665 455443322
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecc-------cccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~-------H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
..-..+..-.....++++....|.-.++++.... +..+.. -...++-|.++|.+.+..++.+|+. ||++|.
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn 518 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDN 518 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eecccc
Confidence 2222222211111111112222232334443322 222211 1234788899999999999999999 999999
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
.+|+.+++.
T Consensus 519 ~~~~~l~s~ 527 (577)
T KOG0642|consen 519 KTGKILHSM 527 (577)
T ss_pred cccccchhe
Confidence 999988753
No 225
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=1.7e-06 Score=78.33 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=119.5
Q ss_pred EcCCCCEEEEEcC-----------CeEEEEEcCCCceEEEEeeec------CCceEEEEEecCCCEEEEEeCCCCCCCCC
Q 022387 93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (298)
Q Consensus 93 fs~dg~~lasgs~-----------~gi~vw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 155 (298)
+||||+.|+++.- +.+.|||..+.+.+....+.. ........++.++..+++..-. .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~ 127 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS 127 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence 9999997665533 668899999998876666410 1112256677788777766522 36
Q ss_pred CeEEEEeCCCCcEEEEeecCCc--------------------------------eEEEE-Ee----------------CC
Q 022387 156 NKVMIWDDHQSRCIGELSFRSE--------------------------------VRSVK-LR----------------RD 186 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~~~~--------------------------------v~~v~-~~----------------~~ 186 (298)
+.|.+.|+.+++.+.++..... +.... |+ ..
T Consensus 128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 8899999998887776542210 00000 11 11
Q ss_pred eEEEEECCeEEEEEcCC-----CeEEEEEecc-----CCCcc--eEEEEeCCCCeEEEEecC-------CCceEEEEEcC
Q 022387 187 RIIVVLEQKIFVYNFAD-----LKLLHQIETI-----ANPKG--LCAVSQGVGSLVLVCPGL-------QKGQVRVEHYA 247 (298)
Q Consensus 187 ~l~v~~~~~I~iwd~~~-----~~~i~~~~~~-----~~~~~--~~~~s~~~d~~~la~sGs-------~dg~v~i~~~~ 247 (298)
.+++...|+|.+.|+.. .+.+..+... -.|.+ .+++++++...+++.-+. ..+.|.+.|..
T Consensus 208 ~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 208 LVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred EEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 33444457788888532 2222222111 12222 356655543333321111 12478888887
Q ss_pred CcceE-eecccccceeEEEECCCCC-EEEEEe-CCCCEEEEEECCCCcEEEec
Q 022387 248 SKRTK-FIMAHDSRIACFALTQDGQ-LLATSS-TKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 248 ~~~~~-~~~~H~~~V~~l~fspdg~-~lAt~S-~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+.+.. .+. -...+..|+|+|||+ +|.+.. .++. |.|.|..+++.+++.
T Consensus 288 t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~-VsViD~~t~k~i~~i 338 (352)
T TIGR02658 288 TGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT-LYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc-EEEEECcCCeEEeee
Confidence 76654 332 234899999999999 777665 5777 999999999998864
No 226
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=104.12 Aligned_cols=199 Identities=15% Similarity=0.213 Sum_probs=136.9
Q ss_pred cccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 79 ~~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
..-++|.+.|+.++.+.+..++|+++.|. |++|.+.....+..+.. |.+.+..+++++.. +.+ .||+
T Consensus 226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~------sss-----~dgt 293 (1113)
T KOG0644|consen 226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA------SSS-----DDGT 293 (1113)
T ss_pred ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhc-cccceeeeccCccc------cCC-----CCCc
Confidence 33478889999999999999999999876 67999988765544433 67777777776544 222 6899
Q ss_pred EEEEeCCCCc--------------EEEEeec-----------------CCceEEEEEeCCeEEEE--------------E
Q 022387 158 VMIWDDHQSR--------------CIGELSF-----------------RSEVRSVKLRRDRIIVV--------------L 192 (298)
Q Consensus 158 v~iWD~~~~~--------------~~~~~~~-----------------~~~v~~v~~~~~~l~v~--------------~ 192 (298)
+++||.+-.. .+..+.+ ....-++.++...+..+ .
T Consensus 294 ~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~ 373 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN 373 (1113)
T ss_pred eEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence 9999987110 0000000 00111112222222211 1
Q ss_pred CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc-ceEe-ecccccceeEEEECCCC
Q 022387 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKF-IMAHDSRIACFALTQDG 270 (298)
Q Consensus 193 ~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~-~~~~-~~~H~~~V~~l~fspdg 270 (298)
+-.+++|++.++.+.+.+.+|.....++.+++- +..++.+...||...|||...+ +++. +.+| ..+...+||+||
T Consensus 374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG 450 (1113)
T ss_pred eeEeeeeecccchhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC
Confidence 247889999999999999999888888887764 4777778899999999998654 3443 3454 566677999999
Q ss_pred CEEEEEeCCCCEEEEEECCCCcE
Q 022387 271 QLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
+.++..-.-|. +.|.....++-
T Consensus 451 ts~~lsd~hgq-l~i~g~gqs~s 472 (1113)
T KOG0644|consen 451 TSIALSDDHGQ-LYILGTGQSKS 472 (1113)
T ss_pred ceEecCCCCCc-eEEeccCCCcc
Confidence 99998877777 99988766543
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.93 E-value=4.5e-06 Score=76.11 Aligned_cols=203 Identities=15% Similarity=0.168 Sum_probs=126.9
Q ss_pred CCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEE--eee-----------cCCceEEEEEecCCCEEEEEeCCCC
Q 022387 86 PTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRR--DFE-----------RGGGIGVVEMLFRCNILALVGGGPD 150 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
..-..++++||+++|+++.- +.+.+++++..+.+... ... .......+.+.++++.++++.-|.
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~- 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA- 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-
Confidence 35568999999999998864 44779999875432222 110 123455677788888887776542
Q ss_pred CCCCCCeEEEEeCCCCc--EEE--Eee--cCCceEEEEEeCC--eEEEEEC--CeEEEEEcC--CC--eEEEEEeccC-C
Q 022387 151 PQYPLNKVMIWDDHQSR--CIG--ELS--FRSEVRSVKLRRD--RIIVVLE--QKIFVYNFA--DL--KLLHQIETIA-N 215 (298)
Q Consensus 151 ~~~~d~~v~iWD~~~~~--~~~--~~~--~~~~v~~v~~~~~--~l~v~~~--~~I~iwd~~--~~--~~i~~~~~~~-~ 215 (298)
..|.+|++.... ... .+. .......+.|+++ .+.+..+ ++|.+|++. ++ +.+.++.... .
T Consensus 166 -----D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 -----DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp -----TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred -----CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 569999987654 322 222 2345677888876 5666653 799999987 33 3344443321 1
Q ss_pred C---cceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceE---eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 216 P---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 216 ~---~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
. .....+..++|+.+|.++......|.+++++ ++.+. .+.......+.++|+|+|++|+.+..+...|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1 1233444455557776667778899998883 23333 33333345899999999999999886665599997
Q ss_pred C--CCCcEE
Q 022387 288 T--LDGTLL 294 (298)
Q Consensus 288 ~--~tg~~l 294 (298)
+ ++|++.
T Consensus 321 ~d~~tG~l~ 329 (345)
T PF10282_consen 321 IDPDTGKLT 329 (345)
T ss_dssp EETTTTEEE
T ss_pred EeCCCCcEE
Confidence 6 577654
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=3.4e-07 Score=85.93 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=111.3
Q ss_pred EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (298)
Q Consensus 108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~ 187 (298)
+.+||.+......... +...+....|++++..+++++... .+..|.+||+.+++......+...+....|+++.
T Consensus 181 l~~~d~dg~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 181 LRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred EEEEcCCCCCCEEeec--CCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 5566665443322222 244677788899999888876322 2357999999888654444444555667888763
Q ss_pred --EEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE--EcCCcceEeeccccc
Q 022387 188 --IIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYASKRTKFIMAHDS 259 (298)
Q Consensus 188 --l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~--~~~~~~~~~~~~H~~ 259 (298)
++...+ ..|.+||+.+++.. .+..+..... ...+++|+..|+++...+|...|| +...+....+..+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~--~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~ 331 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNT--EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS 331 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcC--ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence 444322 26999999877653 3333322233 344555667777655555655564 555555555555555
Q ss_pred ceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCcE
Q 022387 260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTL 293 (298)
Q Consensus 260 ~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~~ 293 (298)
.+.+.+|||||++||..+.++ ..|.+||+.+++.
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 677899999999998876543 2288899988864
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.91 E-value=2.5e-08 Score=87.09 Aligned_cols=201 Identities=14% Similarity=0.222 Sum_probs=117.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCce-E--EEEeee-c------------CCceEEEEEecCCC--EEEEEe
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-I--FRRDFE-R------------GGGIGVVEMLFRCN--ILALVG 146 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~-~--~~~~~~-~------------~~~~~~~~~~~~~~--~~~~~~ 146 (298)
.-|.+|.|...|.+||+|..+| +.+|.-+.... . +...+. | +..+.-+.|...++ .+.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 4789999999999999999877 55774332211 1 111111 2 22344555655443 344545
Q ss_pred CCCCCCCCCCeEEEEeCCCCcEEE---------------E--------------------ee--cCCceEEEEEeCCeE-
Q 022387 147 GGPDPQYPLNKVMIWDDHQSRCIG---------------E--------------------LS--FRSEVRSVKLRRDRI- 188 (298)
Q Consensus 147 ~~~~~~~~d~~v~iWD~~~~~~~~---------------~--------------------~~--~~~~v~~v~~~~~~l- 188 (298)
.|++|++|.++...... . +. |.-.|.++.++.+.-
T Consensus 106 -------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 106 -------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred -------CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 68999999875421110 0 00 112466677766533
Q ss_pred -EEEECCeEEEEEcCC-CeEE--EEEeccC-----CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-----E--
Q 022387 189 -IVVLEQKIFVYNFAD-LKLL--HQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----K-- 252 (298)
Q Consensus 189 -~v~~~~~I~iwd~~~-~~~i--~~~~~~~-----~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-----~-- 252 (298)
+.+-+=.|.+|++.- .+.. ..++.+. ..+.+.-|++.. +.++++ .+..|.|++-|+....+ +
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVY-SSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEE-ecCCCcEEEeechhhhhhcchhhhh
Confidence 333345899999842 2222 2222221 123344555543 456666 68899999988763211 1
Q ss_pred ----------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC-CCCcEEEec
Q 022387 253 ----------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQEG 297 (298)
Q Consensus 253 ----------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~-~tg~~l~~~ 297 (298)
-|..--+.|..+.|+++|+|++|-+. -+ |+|||+ ...+.+.+|
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt-vk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT-VKLWDLNMEAKPVETY 310 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce-eEEEeccccCCcceEE
Confidence 12222357899999999999999853 34 999999 455555554
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=5.3e-08 Score=90.06 Aligned_cols=191 Identities=15% Similarity=0.184 Sum_probs=130.3
Q ss_pred CeEEEEEc-CCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 87 TLLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 87 ~V~~v~fs-~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
.-+.++++ +.-.++..|+..-+.-+|++.++.+.-... ..+.+.++.+.....+++..+ .+|.|..||.+.
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt-------~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGT-------EDGVVEFWDPRD 206 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecc-------cCceEEEecchh
Confidence 44556666 455677777776666778888876554443 246677777765555554444 579999999998
Q ss_pred CcEEEEeecCC------------ceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCC
Q 022387 166 SRCIGELSFRS------------EVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGS 228 (298)
Q Consensus 166 ~~~~~~~~~~~------------~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~ 228 (298)
...+..+.... .|+++.|..+.+-++. .|.|.|||++..+++.. +.|.. ++..+.+....++
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCC
Confidence 77666655433 3899999887666553 48999999998887654 33443 3334444334334
Q ss_pred eEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
..++ ......++||+-.++.....-..+..++.+|+-|++-+|.++-++.. |..+=+.
T Consensus 286 ~~v~--S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~-m~~yyiP 343 (703)
T KOG2321|consen 286 NKVV--SMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK-MHTYYIP 343 (703)
T ss_pred ceEE--ecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc-ceeEEcc
Confidence 5555 35666889999887765544445667999999999999999988776 6555433
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=4.8e-07 Score=84.90 Aligned_cols=159 Identities=16% Similarity=0.084 Sum_probs=99.6
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEE--CCe--EEEEE
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQK--IFVYN 200 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~--I~iwd 200 (298)
...+....|+++++.+++++... ....|.+||+.+++......+...+....|+++. +++.. ++. |.++|
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 45666778899999888877432 2356999999988765443455566678888763 44433 344 44555
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~ 278 (298)
+..++ ++.+..+........++ +|+..|++.+..+|...||.+. .+....+..+.......+|||||++||..+.
T Consensus 271 ~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 54443 34444333333334444 5557776655556677776553 3333333223334556899999999998776
Q ss_pred CC---CEEEEEECCCCcE
Q 022387 279 KG---TLVRIFNTLDGTL 293 (298)
Q Consensus 279 Dg---t~IrIWd~~tg~~ 293 (298)
++ . |.+||+.+++.
T Consensus 348 ~~g~~~-I~v~d~~~g~~ 364 (427)
T PRK02889 348 VGGAFK-LYVQDLATGQV 364 (427)
T ss_pred cCCcEE-EEEEECCCCCe
Confidence 54 5 99999988764
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=6.2e-07 Score=84.36 Aligned_cols=176 Identities=11% Similarity=0.077 Sum_probs=111.9
Q ss_pred EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe
Q 022387 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (298)
Q Consensus 108 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~ 187 (298)
+.++|.+......... +...+....|++++..+++++... .+..|.+||+.+++......+...+....|+++.
T Consensus 184 l~~~d~dg~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 184 LAIMDQDGANVRYLTD--GSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEECCCCCCcEEEec--CCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 4455554433221111 356777888999999888876432 2478999999988764433445566777888754
Q ss_pred --EEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcceEeeccccc
Q 022387 188 --IIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (298)
Q Consensus 188 --l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~ 259 (298)
+++..+ ..|.+||+.+++. ..+..+........+++ |+..+++....+| .|.+++...+....+..+..
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 443332 3688889877654 44544433333445554 5566666444455 56667777766665555566
Q ss_pred ceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCc
Q 022387 260 RIACFALTQDGQLLATSSTKG--TLVRIFNTLDGT 292 (298)
Q Consensus 260 ~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~ 292 (298)
.+...+|||||++||..+.++ ..|.+||+.++.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 678899999999999876543 237888876543
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.85 E-value=1.1e-06 Score=81.97 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=105.5
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEE
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYN 200 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd 200 (298)
...+....+++++..++++.... ....|++||+.+++......+...+.+..|+++ .+++..+ ..|++||
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 33466667888898888876332 236799999998866544445556667788875 3544432 3699999
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~ 278 (298)
+.+++. ..+..+........++ +|+..|++.....| .|.+++........+..+...+..++|+|||++|+.++.
T Consensus 265 ~~~~~~-~~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 265 LDGKQL-TRLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CCCCCE-EECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEc
Confidence 977654 3343333323334454 45566665444445 455577766665556556677888999999999999988
Q ss_pred CC---CEEEEEECCCCcE
Q 022387 279 KG---TLVRIFNTLDGTL 293 (298)
Q Consensus 279 Dg---t~IrIWd~~tg~~ 293 (298)
++ . |.+||+.++..
T Consensus 342 ~~~~~~-i~~~d~~~~~~ 358 (417)
T TIGR02800 342 EGGGFN-IAVMDLDGGGE 358 (417)
T ss_pred cCCceE-EEEEeCCCCCe
Confidence 76 6 88999887643
No 234
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.82 E-value=4.2e-08 Score=91.73 Aligned_cols=189 Identities=14% Similarity=0.186 Sum_probs=122.4
Q ss_pred EEcCCCCEEEE---EcCCeEEEEEcCCCceEEE---EeeecCCceEEEEE-ecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 92 SFNQDHGCFAA---GTDHGFRIYNCDPFREIFR---RDFERGGGIGVVEM-LFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 92 ~fs~dg~~las---gs~~gi~vw~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
.|+.+.+++|+ |+.+.|.||++...+.+-- -.+.-+..+.-+.| .|+...+|+++ +|+.|+||-+.
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~-------ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT-------DDGQINLWRLT 658 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc-------cCceEEEEEec
Confidence 35556677775 3334467999854332110 01101222333344 36778889988 78999999876
Q ss_pred CCc-------EEEEeecC-CceEEEEEeC---CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEE
Q 022387 165 QSR-------CIGELSFR-SEVRSVKLRR---DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 165 ~~~-------~~~~~~~~-~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la 232 (298)
.+. ....+..+ ..|+.+.||+ +.++++. +-+|++||+.+++...++.+|...+. .|+++++|..+|
T Consensus 659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf--~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 659 ANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF--GIAWSPDGRRIA 736 (1012)
T ss_pred cCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee--EEEECCCCccee
Confidence 532 22334444 5899999997 5566654 67999999999999889998877654 455555668888
Q ss_pred EecCCCceEEEEEcCCcceEeec--cc-ccceeEEEECCCCCEEEEEeCCCC---EEEEEECCC
Q 022387 233 CPGLQKGQVRVEHYASKRTKFIM--AH-DSRIACFALTQDGQLLATSSTKGT---LVRIFNTLD 290 (298)
Q Consensus 233 ~sGs~dg~v~i~~~~~~~~~~~~--~H-~~~V~~l~fspdg~~lAt~S~Dgt---~IrIWd~~t 290 (298)
. -..||+|++|.-...+..... +- ...-..|.|--||++++..+.|.. +|.+||.++
T Consensus 737 t-VcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 737 T-VCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred e-eecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 4 788999999987655433222 11 123345677789999998888762 256666543
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=3.9e-07 Score=80.29 Aligned_cols=192 Identities=17% Similarity=0.172 Sum_probs=119.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCCCCCCCCeEEEE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~iW 161 (298)
.+-.++.++|+|.-..+|++.. |.||+|+..... ....+......+.+++|.+.+.. ++++. .+-|.||
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lks~sQrnvtclawRPlsaselavgC--------r~gIciW 167 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLKSVSQRNVTCLAWRPLSASELAVGC--------RAGICIW 167 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCCCC-CceecchhhcceeEEEeccCCcceeeeee--------cceeEEE
Confidence 3447899999998777888876 778999876522 22222112567889999876544 44444 3559999
Q ss_pred eCCCC----cEE--------EEee--cCCceEEEEEeCCeEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387 162 DDHQS----RCI--------GELS--FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 162 D~~~~----~~~--------~~~~--~~~~v~~v~~~~~~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s 223 (298)
..... ..+ .-++ .+..|.++.|+++....++ +..|+|||..++..+.-.. ....+..-+-
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLk 245 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLK 245 (445)
T ss_pred EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEE
Confidence 86431 111 1122 3457999999988655543 4699999998776544332 2223333334
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
++||+.+|.+ .+-|+..++|.....-.+ ...--.+.|..-+|+|+|++|.-++... =+|+.+.
T Consensus 246 wSPdgd~lfa-At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lysl~ 309 (445)
T KOG2139|consen 246 WSPDGDVLFA-ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYSLT 309 (445)
T ss_pred EcCCCCEEEE-ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEEEe
Confidence 4445555553 699999999965433221 1222334899999999998776665433 3466543
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.6e-06 Score=80.28 Aligned_cols=204 Identities=16% Similarity=0.221 Sum_probs=129.2
Q ss_pred CCCCCeEEEEEcCCCC--EEEE-----EcC-CeEEEEEcCC---CceEEEEeeecCCceEEEEEecCCCE-EEEEeCCCC
Q 022387 83 SPPPTLLHISFNQDHG--CFAA-----GTD-HGFRIYNCDP---FREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD 150 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~--~las-----gs~-~gi~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 150 (298)
.|...|+...+||-+. ++|+ ++. ..+|||-+.- ...+..+.| -..+...+.|...+.. |++++..-|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-Fkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-FKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-cccceeEEEeccCCceEEEEEEEeec
Confidence 3456889999998643 5664 222 4488997641 122222222 1233344445444443 444432211
Q ss_pred ----CCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEE
Q 022387 151 ----PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCA 221 (298)
Q Consensus 151 ----~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~ 221 (298)
+=+...++.+.+.+...+...+.-.++|.++.|++.. ++++-. -++-|||++ ++++..+ ...+...+.
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~ 318 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF 318 (566)
T ss_pred CCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence 1122356888888855666666667899999998754 777655 589999986 4554444 456777888
Q ss_pred EEeCCCCeEEEEecCC--CceEEEEEcCCcce-EeecccccceeEEEECCCCCEEEEEeC------CCCEEEEEECCCCc
Q 022387 222 VSQGVGSLVLVCPGLQ--KGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSST------KGTLVRIFNTLDGT 292 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~--dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspdg~~lAt~S~------Dgt~IrIWd~~tg~ 292 (298)
|++++ .+++++|-. .|.+.|||..+.+. ..+.+- .-+-++|+|||.+|.|+.. |.. ||||++ +|.
T Consensus 319 fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg-~Kiwhy-tG~ 392 (566)
T KOG2315|consen 319 FNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNG-IKIWHY-TGS 392 (566)
T ss_pred ECCCC--CEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCC-eEEEEe-cCc
Confidence 88877 555555544 68999999987543 345543 3455689999999999853 678 999995 466
Q ss_pred EEEe
Q 022387 293 LLQE 296 (298)
Q Consensus 293 ~l~~ 296 (298)
.+++
T Consensus 393 ~l~~ 396 (566)
T KOG2315|consen 393 LLHE 396 (566)
T ss_pred eeeh
Confidence 6655
No 237
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=4.5e-06 Score=78.32 Aligned_cols=201 Identities=10% Similarity=0.034 Sum_probs=116.1
Q ss_pred CCeEEEEEcCCCCE--E-EEEcCCe---EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 86 PTLLHISFNQDHGC--F-AAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 86 ~~V~~v~fs~dg~~--l-asgs~~g---i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..+..=+|||||+. + ++...++ |.+.+++.++......+ .+......|++++..++++..... ..+-.+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~ 260 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQ 260 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCC--CcceeEE
Confidence 34566799999975 2 2444333 44557766554333333 344455678899998888763221 0233455
Q ss_pred EEeCCCC---cEEEEeecC-CceEEEEEeCC--eEEEEEC--C--eEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCC
Q 022387 160 IWDDHQS---RCIGELSFR-SEVRSVKLRRD--RIIVVLE--Q--KIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 160 iWD~~~~---~~~~~~~~~-~~v~~v~~~~~--~l~v~~~--~--~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
+||+..+ ......... .......|+++ .++...+ + .|.++++.. +...+.+..+........+ ++|+
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w--SPDG 338 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW--SPDG 338 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE--CCCC
Confidence 6787653 222222222 23355678876 3454443 4 344555532 2233344333333334444 5555
Q ss_pred eEEEEecCCCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC---CCCEEEEEECCCCcE
Q 022387 229 LVLVCPGLQKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTL 293 (298)
Q Consensus 229 ~~la~sGs~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~---Dgt~IrIWd~~tg~~ 293 (298)
..|++.+..+| .|.+|+..++....+......+....|+|||++|+-.+. ... |.+||+.+++.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~-L~~vdl~~g~~ 407 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE-LYLISLITKKT 407 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce-EEEEECCCCCE
Confidence 77776555444 677799888777666555556788999999998875433 234 88899988765
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=5.2e-08 Score=100.00 Aligned_cols=189 Identities=12% Similarity=0.198 Sum_probs=126.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
-..|+++.=+|..-+.++|+.+| +++|....++.+..........+.-+.++..++.+.++. .||.+-+|..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d-------~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVD-------GDGDLSLWQA 2280 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeec-------cCCceeeccc
Confidence 35788888889888888998877 779999877766655531123333444566778777776 4688999998
Q ss_pred CCCcEEEEeec-CCceEEEEEeCCeEEEEE----CCeEEEEEcC---CCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 164 HQSRCIGELSF-RSEVRSVKLRRDRIIVVL----EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 164 ~~~~~~~~~~~-~~~v~~v~~~~~~l~v~~----~~~I~iwd~~---~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
.... ....+. +.....+.|-...++.++ ++.+.+||.. ..-+++ ..|.....++++.| ..++|+ +|
T Consensus 2281 ~pk~-~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P--~~qlli-sg 2354 (2439)
T KOG1064|consen 2281 SPKP-YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP--KHQLLI-SG 2354 (2439)
T ss_pred CCcc-eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC--cceEEE-ec
Confidence 7332 222222 223333444444444433 2589999973 233444 44555455555554 557777 69
Q ss_pred CCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 236 LQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+.+|.|++||....++. ++++ +. ...+|++|+..|. ||||++..-.++++|
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcC
Confidence 99999999999877643 4443 44 5689999999999 999999987777664
No 239
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.72 E-value=2.6e-07 Score=82.16 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=62.2
Q ss_pred EeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC-CcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 210 ~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~-~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+-+|-....-+++++|+ +++. ++..|+.|+|-.+. .-.+. -+.||+.-|..|+.-++ +.|++||-|++ +|+||
T Consensus 147 ~lGhvSml~dVavS~D~--~~Ii-taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd 221 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDD--QFII-TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWD 221 (390)
T ss_pred hhhhhhhhheeeecCCC--CEEE-EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEe
Confidence 34455555556666665 7776 48999999994433 22333 45689999999999775 45899999999 99999
Q ss_pred CCCCcEEEec
Q 022387 288 TLDGTLLQEG 297 (298)
Q Consensus 288 ~~tg~~l~~~ 297 (298)
+++|++++++
T Consensus 222 ~~sgk~L~t~ 231 (390)
T KOG3914|consen 222 ITSGKLLDTC 231 (390)
T ss_pred cccCCccccc
Confidence 9999999875
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.9e-06 Score=80.05 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=123.8
Q ss_pred CCCCEEEEEcCCe-EEEEEcCCCceEEEE--eeecCCceEEEEEe--------------------cCCCEEEEEeCCCCC
Q 022387 95 QDHGCFAAGTDHG-FRIYNCDPFREIFRR--DFERGGGIGVVEML--------------------FRCNILALVGGGPDP 151 (298)
Q Consensus 95 ~dg~~lasgs~~g-i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~ 151 (298)
+-+.|+|....+| +|||+....+..... ..+-.+......|. .+...+++..
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt----- 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT----- 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec-----
Confidence 4467889888777 789998776542211 11012222222221 0112223333
Q ss_pred CCCCCeEEEEeCCCCcEEEEee---cCCceEEEEEeCC--eEEEE-ECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeC
Q 022387 152 QYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRD--RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (298)
Q Consensus 152 ~~~d~~v~iWD~~~~~~~~~~~---~~~~v~~v~~~~~--~l~v~-~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~ 225 (298)
..|.|-++++..++....+. +.+.|.++.++.+ -+..+ .+..+..|+....+.++..+.....+..+++++|
T Consensus 78 --~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 78 --PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred --CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 34789999999999888776 3457888777654 23333 3579999999999999998876666677777776
Q ss_pred CCCeEEEEecCCCceEEEEEcCCcce-EeecccccceeEEEECCC-----CCEEEEE-eCCCCEEEEEECCC
Q 022387 226 VGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQD-----GQLLATS-STKGTLVRIFNTLD 290 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i~~~~~~~~-~~~~~H~~~V~~l~fspd-----g~~lAt~-S~Dgt~IrIWd~~t 290 (298)
+.++++ ..+.|.+|+.+++++ .+|.+|.++|++++|-.+ |.+|.++ ..+.. |-+|-+..
T Consensus 156 --~~~l~~---as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~~ 221 (541)
T KOG4547|consen 156 --GKILLT---ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVEK 221 (541)
T ss_pred --CCEEEe---ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEEc
Confidence 467763 337999999998875 489999999999999877 6666655 44555 88887665
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=3.9e-07 Score=80.25 Aligned_cols=153 Identities=12% Similarity=0.154 Sum_probs=108.1
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEEeC---CeEEEEECCeEEEEEc
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRR---DRIIVVLEQKIFVYNF 201 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~---~~l~v~~~~~I~iwd~ 201 (298)
+-.+..+.|..+...+++++ .|-.|+++|... .+...++.. ..|.+++|.| ..++++....|.||..
T Consensus 98 ~~dlr~~aWhqH~~~fava~-------nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVAT-------NDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSD 169 (445)
T ss_pred hcceeeEeechhhhhhhhhc-------cCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEc
Confidence 44566777766555566655 678899999877 333444443 3799999865 5788888899999987
Q ss_pred C-CC---eEEEEEe-------ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec-ccccceeEEEECCC
Q 022387 202 A-DL---KLLHQIE-------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQD 269 (298)
Q Consensus 202 ~-~~---~~i~~~~-------~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~-~H~~~V~~l~fspd 269 (298)
. +. ..++-.. .+.+...+..+.+.+|+..++.+.-.+..|.|||..++...-+. .--+.++-+.||||
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred CcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 3 11 1111111 11222445666677777888876777889999999887655444 44567999999999
Q ss_pred CCEEEEEeCCCCEEEEEEC
Q 022387 270 GQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 270 g~~lAt~S~Dgt~IrIWd~ 288 (298)
|.+|..+.-|+. .+||+.
T Consensus 250 gd~lfaAt~dav-frlw~e 267 (445)
T KOG2139|consen 250 GDVLFAATCDAV-FRLWQE 267 (445)
T ss_pred CCEEEEecccce-eeeehh
Confidence 999999999999 999953
No 242
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.67 E-value=2.7e-05 Score=66.97 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=119.8
Q ss_pred EEEcCCCCEEEEEcCCeEEEEEcCC-CceE-EEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 91 ISFNQDHGCFAAGTDHGFRIYNCDP-FREI-FRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 91 v~fs~dg~~lasgs~~gi~vw~~~~-~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
++.+.||++||.--+..+.|=.... ..-+ ...... ....-+-++|++++..+|.+. ..|+|+++|+...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-------S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-------STGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-------CCCeEEEEecccc
Confidence 5678899999988777665553321 1111 111111 233446788899999999988 4599999998653
Q ss_pred cEEEEee--------cCCceEEEEEeC---------CeEEEEECCeEEEEEc-----CCCeEEEEEeccC-CCcceEEEE
Q 022387 167 RCIGELS--------FRSEVRSVKLRR---------DRIIVVLEQKIFVYNF-----ADLKLLHQIETIA-NPKGLCAVS 223 (298)
Q Consensus 167 ~~~~~~~--------~~~~v~~v~~~~---------~~l~v~~~~~I~iwd~-----~~~~~i~~~~~~~-~~~~~~~~s 223 (298)
... .+. ....|..+.|-. ..+++.-.|.++-|-+ ...+..++|.-.. .+.++.++.
T Consensus 76 ~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 76 ELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred eeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 322 221 122344454422 2333334677776665 2344455554322 356777777
Q ss_pred eCCCCeEEEEecCCCce----------EEEEEcCC-----------------c-------ceEe---e---cccccceeE
Q 022387 224 QGVGSLVLVCPGLQKGQ----------VRVEHYAS-----------------K-------RTKF---I---MAHDSRIAC 263 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~----------v~i~~~~~-----------------~-------~~~~---~---~~H~~~V~~ 263 (298)
.++..++|.++|..... +.-|.+-. . ++.. + ..-...|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 77777777776655332 22233210 0 0011 1 112456999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 264 l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|..||||++||+.+.+|. |-||++.+-++.+++
T Consensus 235 mSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSW 267 (282)
T ss_pred EEECCCCCEEEEEEcCCe-EEEEecCcchhhccc
Confidence 999999999999999999 999999998776653
No 243
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2.2e-06 Score=79.40 Aligned_cols=84 Identities=12% Similarity=0.151 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC----CCCeEEEEeC
Q 022387 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY----PLNKVMIWDD 163 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~v~iWD~ 163 (298)
=+.+.|||-|+||++=...||.+|--.....+.+.. ...+..+.+++.-.+|++-+...+..- ....+.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc---CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 367999999999999999999999766655543333 346788888888888877654322110 2367999999
Q ss_pred CCCcEEEEeec
Q 022387 164 HQSRCIGELSF 174 (298)
Q Consensus 164 ~~~~~~~~~~~ 174 (298)
.+|...+.+..
T Consensus 290 ~tG~lkrsF~~ 300 (698)
T KOG2314|consen 290 ATGLLKRSFPV 300 (698)
T ss_pred cccchhcceec
Confidence 99987666543
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.66 E-value=7.2e-07 Score=82.14 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=86.6
Q ss_pred ceEEEEEeCC--eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-
Q 022387 177 EVRSVKLRRD--RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK- 252 (298)
Q Consensus 177 ~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~- 252 (298)
.|...+|+++ .|+++. |+.+||+|..+++++..++. .-.+.+++++++|+.+|++ |..|--|.||.+..+++.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvt-GGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVT-GGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEe-cCCcceEEEEEeccceEEE
Confidence 5667777765 444444 68999999988887665543 2245677788888899995 999999999999988765
Q ss_pred eecccccceeEEEECC------------------------------------------------CCCEEEEEeCCCCEEE
Q 022387 253 FIMAHDSRIACFALTQ------------------------------------------------DGQLLATSSTKGTLVR 284 (298)
Q Consensus 253 ~~~~H~~~V~~l~fsp------------------------------------------------dg~~lAt~S~Dgt~Ir 284 (298)
.-.+|++-|+.|+|.| .-..|.+.+.|-. +-
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq-lc 447 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ-LC 447 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce-EE
Confidence 5679999999999982 1137888999988 99
Q ss_pred EEECCCCc
Q 022387 285 IFNTLDGT 292 (298)
Q Consensus 285 IWd~~tg~ 292 (298)
+||+..-.
T Consensus 448 LWDlteD~ 455 (636)
T KOG2394|consen 448 LWDLTEDV 455 (636)
T ss_pred EEecchhh
Confidence 99987543
No 245
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=4.4e-06 Score=71.13 Aligned_cols=196 Identities=12% Similarity=0.085 Sum_probs=115.3
Q ss_pred EEEEEcC-----CCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEE
Q 022387 89 LHISFNQ-----DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 89 ~~v~fs~-----dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
..+.|-| .-.+||.|+..| +.+|.+.+.+......-.+..++.++....+ .-.+.+++ .|.++++.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~ 143 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTM 143 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEE
Confidence 3456665 334789888755 7899998765433332113444444432222 12234444 67888888
Q ss_pred eCCCCcEEEEeecC-CceEEEEEeC--CeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 162 DDHQSRCIGELSFR-SEVRSVKLRR--DRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 162 D~~~~~~~~~~~~~-~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
++.-+..-..+-.. -.+..+..++ ..++++++ ..|..|.+.+ .+.+..+............+++.....+|+ ++
T Consensus 144 ~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~ 222 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VF 222 (344)
T ss_pred EEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-Ee
Confidence 87654322222221 1255566654 34444554 6899999843 333333222222233444455555678885 99
Q ss_pred CCceEEEEEcCCcce------EeecccccceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEE
Q 022387 237 QKGQVRVEHYASKRT------KFIMAHDSRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~------~~~~~H~~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.||++.|||+..... .+-..|+++|+.+.|++-|. +|.|-. =+. ++|-|+++++..
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~-~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSR-VHVVDTRNYVNH 287 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cce-EEEEEcccCcee
Confidence 999999999875421 23456999999999997653 444443 344 899999998653
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.63 E-value=3.2e-08 Score=89.43 Aligned_cols=185 Identities=13% Similarity=0.122 Sum_probs=133.2
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
..|+.+.|=.+-.+||++-.+-+.|||-.-.+....++ ...+.-+++.+..-+|+.++ ..|-++.-|+.+
T Consensus 171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~---~~~v~rLeFLPyHfLL~~~~-------~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKR---HIRVARLEFLPYHFLLVAAS-------EAGFLKYQDVST 240 (545)
T ss_pred hhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhh---cCchhhhcccchhheeeecc-------cCCceEEEeech
Confidence 37888889888899999988878899865544333333 34556666655444455444 458899999999
Q ss_pred CcEEEEeecC-CceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387 166 SRCIGELSFR-SEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (298)
Q Consensus 166 ~~~~~~~~~~-~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v 241 (298)
|+.+..+... +.+..+..+|-.-++.. .|+|.+|.-...+++..+..|..++..+++.+.+ .++|+ .+.|..|
T Consensus 241 GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G--~YMaT-tG~Dr~~ 317 (545)
T KOG1272|consen 241 GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG--RYMAT-TGLDRKV 317 (545)
T ss_pred hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC--cEEee-cccccce
Confidence 9998887654 46666667775555543 4899999999899999999999999888886654 99996 6778899
Q ss_pred EEEEcCCc-ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 242 RVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 242 ~i~~~~~~-~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+|||+..- .+.++.. .-+...++||..|-+-++-| .. |.||.
T Consensus 318 kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G--~~-v~iw~ 360 (545)
T KOG1272|consen 318 KIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYG--DH-VQIWK 360 (545)
T ss_pred eEeeeccccccceeec-CCCccccccccccceeeecC--Ce-eeeeh
Confidence 99998753 3333332 35688899998775443333 34 89996
No 247
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.63 E-value=1.4e-06 Score=75.69 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=108.9
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc---EEEEee-cCCceEEEEEeC--CeEEEEE-CCeEEEE
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---CIGELS-FRSEVRSVKLRR--DRIIVVL-EQKIFVY 199 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~---~~~~~~-~~~~v~~v~~~~--~~l~v~~-~~~I~iw 199 (298)
...+.+.++..+...+|++. ..+.|.|+.....+ ..++++ +...|..++|++ +++..+. +..-++|
T Consensus 10 ~~pitchAwn~drt~iAv~~-------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSP-------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred cCceeeeeecCCCceEEecc-------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 46778888887777788877 55789999887765 344554 345888999986 4566665 5688899
Q ss_pred Ec-CCC--eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-----eecccccceeEEEECCCCC
Q 022387 200 NF-ADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----FIMAHDSRIACFALTQDGQ 271 (298)
Q Consensus 200 d~-~~~--~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-----~~~~H~~~V~~l~fspdg~ 271 (298)
.. .++ ++.-.+..+... ...+.+.|....+|+ |+.-..|.||-++.+.-. +-+.+.+.|++++|+|+.-
T Consensus 83 ~~~~~~~WkptlvLlRiNrA--At~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRA--ATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ccCCCCeeccceeEEEeccc--eeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 88 332 333333333333 345555566688886 999999999777765432 4456788899999999999
Q ss_pred EEEEEeCCCCEEEEEEC
Q 022387 272 LLATSSTKGTLVRIFNT 288 (298)
Q Consensus 272 ~lAt~S~Dgt~IrIWd~ 288 (298)
+||.||.|+. .|||..
T Consensus 160 LlaaGs~D~k-~rVfSa 175 (361)
T KOG1523|consen 160 LLAAGSTDGK-CRVFSA 175 (361)
T ss_pred eecccccCcc-eeEEEE
Confidence 9999999999 999974
No 248
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=4.4e-05 Score=79.07 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=116.3
Q ss_pred CeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeee------cC---------CceEEEEEecCCCEEEEEeCCC
Q 022387 87 TLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFE------RG---------GGIGVVEMLFRCNILALVGGGP 149 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
.-..|++++++..|+++.. +.|++++..+.......... .. .....+.+..+...+.++..
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-- 702 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-- 702 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--
Confidence 3467889988876655543 55778887654321110000 00 01123444543444444432
Q ss_pred CCCCCCCeEEEEeCCCCcEEEEeec----------------CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEEE
Q 022387 150 DPQYPLNKVMIWDDHQSRCIGELSF----------------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLHQ 209 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~~~~~~~~----------------~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~~ 209 (298)
.++.|++||..++.... +.. ......++++++ .+.++. ++.|++||+.++.....
T Consensus 703 ----~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 703 ----GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL 777 (1057)
T ss_pred ----CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence 35789999987765421 110 012345777765 366654 37999999976543211
Q ss_pred Eec----------------------cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc-----------
Q 022387 210 IET----------------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----------- 256 (298)
Q Consensus 210 ~~~----------------------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~----------- 256 (298)
..+ ..+| ..+++ ++++.+++ +...++.|++|+..+..+.++.+
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvav--d~dG~LYV-ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLC--AKDGQIYV-ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCC-ceeeE--eCCCcEEE-EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 100 0011 13344 44455555 47889999999988766554332
Q ss_pred ---cccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 257 ---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 257 ---H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
+-.....|+++++|+++++-+.+++ ||+||+.+++.
T Consensus 854 ~~a~l~~P~GIavd~dG~lyVaDt~Nn~-Irvid~~~~~~ 892 (1057)
T PLN02919 854 LKAQLSEPAGLALGENGRLFVADTNNSL-IRYLDLNKGEA 892 (1057)
T ss_pred cccccCCceEEEEeCCCCEEEEECCCCE-EEEEECCCCcc
Confidence 2235789999999999999988998 99999999875
No 249
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.60 E-value=5.8e-05 Score=64.52 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=116.1
Q ss_pred CCCEEEEE-cCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe-e
Q 022387 96 DHGCFAAG-TDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S 173 (298)
Q Consensus 96 dg~~lasg-s~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~-~ 173 (298)
++.++.++ .++.+..||..+++.+++..+ .+.+.... ....+.+++.. .++.+..+|..+++.+.+. .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~-~~~~~~v~v~~-------~~~~l~~~d~~tG~~~W~~~~ 104 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAP-VVDGGRVYVGT-------SDGSLYALDAKTGKVLWSIYL 104 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGE-EEETTEEEEEE-------TTSEEEEEETTTSCEEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--ccccccee-eeccccccccc-------ceeeeEecccCCcceeeeecc
Confidence 44555555 456788999999998888775 23222212 22344555555 3578999999999988774 3
Q ss_pred cCC------ceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcc---------eEEEEeCCCCeEEEEecCC
Q 022387 174 FRS------EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQ 237 (298)
Q Consensus 174 ~~~------~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~---------~~~~s~~~d~~~la~sGs~ 237 (298)
... ......+..+.++++. ++.|..+|+.+++.+.++........ ....... ++.+++ ++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~--~~~ 181 (238)
T PF13360_consen 105 TSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYV--SSG 181 (238)
T ss_dssp -SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TTEEEE--ECC
T ss_pred ccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CCEEEE--EcC
Confidence 221 2234555677788877 68999999999999998877432211 1222222 235554 455
Q ss_pred Cce-EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 238 KGQ-VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 238 dg~-v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|. +.+ |..+.... .......+..+ ...++..|+.++.|+. |..||+++|+.+.++
T Consensus 182 ~g~~~~~-d~~tg~~~-w~~~~~~~~~~-~~~~~~~l~~~~~~~~-l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 182 DGRVVAV-DLATGEKL-WSKPISGIYSL-PSVDGGTLYVTSSDGR-LYALDLKTGKVVWQQ 238 (238)
T ss_dssp TSSEEEE-ETTTTEEE-EEECSS-ECEC-EECCCTEEEEEETTTE-EEEEETTTTEEEEEE
T ss_pred CCeEEEE-ECCCCCEE-EEecCCCccCC-ceeeCCEEEEEeCCCE-EEEEECCCCCEEeEC
Confidence 664 556 87776533 22112223332 3466777777778999 999999999998764
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=2.6e-06 Score=83.80 Aligned_cols=189 Identities=11% Similarity=0.088 Sum_probs=125.8
Q ss_pred EEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCce---EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 90 HISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
...+..+.+.++.+.. +.+.+|+........... +.... .++-+....+.+.+++|. .-+.|.+|+...
T Consensus 92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gs-----v~~~iivW~~~~ 164 (967)
T KOG0974|consen 92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGS-----VFGEIIVWKPHE 164 (967)
T ss_pred ccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEecc-----ccccEEEEeccc
Confidence 3555556667776655 666788776544332222 11211 112223344555555543 348899999873
Q ss_pred C-cEEEEeecCCceEEEEEe--CCeEEEEEC-CeEEEEEcCCCeEEE-EEeccCCCcceEEEEeCCCCeEEEEecCCCce
Q 022387 166 S-RCIGELSFRSEVRSVKLR--RDRIIVVLE-QKIFVYNFADLKLLH-QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (298)
Q Consensus 166 ~-~~~~~~~~~~~v~~v~~~--~~~l~v~~~-~~I~iwd~~~~~~i~-~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~ 240 (298)
. ..+...-+.+.++++.++ ...++.+.+ .++|+|++.+.+... +.-+|..-+.-+.| .+ ..++ +++.|-+
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~--~~--n~i~-t~gedct 239 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF--LP--NRII-TVGEDCT 239 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe--cc--ceeE-EeccceE
Confidence 2 333344456789999985 456666664 699999998877655 33344444444444 44 2555 5899999
Q ss_pred EEEEEcCCcceEeeccccc-ceeEEEECCCCCEEEEEeCCCCEEEEEECCCC
Q 022387 241 VRVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 241 v~i~~~~~~~~~~~~~H~~-~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
+++|+.+...+.++.+|.. .|+.++..++....+|++.|++ +|+||+...
T Consensus 240 crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~-lk~~~l~~r 290 (967)
T KOG0974|consen 240 CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST-LKLWDLNGR 290 (967)
T ss_pred EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc-hhhhhhhcc
Confidence 9999988887778889976 5999999999999999999999 999997653
No 251
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=2.7e-06 Score=75.80 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=107.1
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC------CcEEEEeecC--CceEEEEEeCC-eEEEEE--CC
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELSFR--SEVRSVKLRRD-RIIVVL--EQ 194 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~------~~~~~~~~~~--~~v~~v~~~~~-~l~v~~--~~ 194 (298)
|.+-+..+.++.++..|+ +|| +|..++||++.. .+.|.-..++ +.|+++.|+.. .++..+ .+
T Consensus 55 H~GCiNAlqFS~N~~~L~--SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLA--SGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hccccceeeeccCCeEEe--ecC-----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 456666667766655444 444 578899999753 3445444433 57999999753 333333 37
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeecccccceeEEEECCC-
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD- 269 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~~V~~l~fspd- 269 (298)
+|..-|+.+.+.+..+....+...+..++.+|-..++++ .+.+|.|.+||....+ +..+........++.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-VTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEE-EecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 999999999988877765443333444444443455653 6899999999987665 1223334567899999987
Q ss_pred CCEEEEEeCCCCEEEEEECCCC
Q 022387 270 GQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 270 g~~lAt~S~Dgt~IrIWd~~tg 291 (298)
..+||+.+..+. +.|||.+..
T Consensus 207 P~Li~~~~~~~G-~~~~D~R~~ 227 (609)
T KOG4227|consen 207 PALILVNSETGG-PNVFDRRMQ 227 (609)
T ss_pred ceeEEeccccCC-CCceeeccc
Confidence 589999999999 999998753
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.57 E-value=0.00029 Score=64.24 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=118.0
Q ss_pred CeEEEEEcCCCCEEEEEcCC-----eEEEEEcCCC--ceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 87 TLLHISFNQDHGCFAAGTDH-----GFRIYNCDPF--REIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~-----gi~vw~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
....++++|++++|.+..+. ++..|.++.. +........ .......+.+..++..++++.- ..++|
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v 111 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSV 111 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeE
Confidence 45568899999998887652 5778887764 332222221 2455577788888988888873 35899
Q ss_pred EEEeCCCCcEEEE----eec-----------CCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCe--E--EEEEeccCC
Q 022387 159 MIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLK--L--LHQIETIAN 215 (298)
Q Consensus 159 ~iWD~~~~~~~~~----~~~-----------~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~--~--i~~~~~~~~ 215 (298)
.++++.....+.. +.+ .....++.++++ .++++. .+.|.+|++.... + ...+.....
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 9999987432222 211 235778889875 455543 3799999996543 3 233332211
Q ss_pred -CcceEEEEeCCCCeEEEEecCCCceEEEEEcC--CcceE------eec-cc--ccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 216 -PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK------FIM-AH--DSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 216 -~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~~~------~~~-~H--~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
--.-+.|++++ .++.+....++.|.++++. ...+. ++. .. ......|+++|||++|..+......|
T Consensus 192 ~GPRh~~f~pdg--~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 SGPRHLAFSPDG--KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SSEEEEEE-TTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCCcEEEEcCCc--CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 11235566554 5444457888999997776 33221 111 11 12588999999999877765433349
Q ss_pred EEEECC
Q 022387 284 RIFNTL 289 (298)
Q Consensus 284 rIWd~~ 289 (298)
-+|++.
T Consensus 270 ~vf~~d 275 (345)
T PF10282_consen 270 SVFDLD 275 (345)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999993
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.55 E-value=1.9e-06 Score=84.76 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=107.0
Q ss_pred EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-----EEEeCCeEEEEEC---CeEEEEEcCCCe
Q 022387 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-----VKLRRDRIIVVLE---QKIFVYNFADLK 205 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-----v~~~~~~l~v~~~---~~I~iwd~~~~~ 205 (298)
.+.+....+++.. .++.+-+||...+....++.....+.- +.++.+.+.++.. +.|.+|+....+
T Consensus 94 ~l~~e~k~i~l~~-------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 94 KLFEENKKIALVT-------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred chhhhcceEEEEE-------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3344455566666 568899999988887777766553322 2345666665543 899999986333
Q ss_pred EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
.-..+.+|...+..+.++ .|+.+++ +.|.|-++++|.+++.+.. +.-+|+..|+.++|.|+ +++|+|+|-+ .
T Consensus 167 ~p~~l~GHeG~iF~i~~s--~dg~~i~-s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-c 240 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTS--LDGRYIA-SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-C 240 (967)
T ss_pred CcceecccCCceEEEEEc--cCCcEEE-EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-E
Confidence 333567776655444444 4558888 5999999999999987643 67799999999999998 9999999999 9
Q ss_pred EEEECCCCcEEEec
Q 022387 284 RIFNTLDGTLLQEG 297 (298)
Q Consensus 284 rIWd~~tg~~l~~~ 297 (298)
|+|+.. ++.+.+|
T Consensus 241 rvW~~~-~~~l~~y 253 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVY 253 (967)
T ss_pred EEEecc-cceehhh
Confidence 999643 4444333
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=2e-05 Score=74.42 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=96.2
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CC--eEEEEE
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQ--KIFVYN 200 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~--~I~iwd 200 (298)
...+....|++++..++.++... ....|.+||+.+++......+........|+++ .+++.. ++ .|.++|
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 44556678899999888876322 124689999988775433333334456778775 454433 23 588889
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~ 278 (298)
+.+++. ..+..+.......++++ |+..++++...+|...+ ++...+....+..+.......+|+|||++|+..+.
T Consensus 293 l~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 293 IATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred CCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 877654 34443333333445554 55767665555565555 56655555443322233456799999999988766
Q ss_pred CC-C-EEEEEECCCCcE
Q 022387 279 KG-T-LVRIFNTLDGTL 293 (298)
Q Consensus 279 Dg-t-~IrIWd~~tg~~ 293 (298)
++ . .|.++|+.+++.
T Consensus 370 ~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 370 TNGKFNIARQDLETGAM 386 (448)
T ss_pred cCCceEEEEEECCCCCe
Confidence 43 2 144567777754
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=4.2e-05 Score=71.78 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=98.6
Q ss_pred CCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEE--CC--eEEEEE
Q 022387 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVL--EQ--KIFVYN 200 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~--~I~iwd 200 (298)
...+....|++++..+++++... ....|.+||+.+++......+...+....|+++ .++... ++ .|.+||
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~----~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQ----KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCC----CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 44556678889999888876332 124699999998866443334444556788875 454433 22 788999
Q ss_pred cCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC
Q 022387 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (298)
Q Consensus 201 ~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~ 278 (298)
+.+++. +.+..+........++ +|+..++++...+|. |.+++...+....+..........+|+|||++|+..+.
T Consensus 274 ~~~~~~-~~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 274 LASRQL-SRVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred CCCCCe-EEcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence 987654 3344333333334444 455666655555554 55566665554433322233456789999999988875
Q ss_pred CC--CEEEEEECCCCcE
Q 022387 279 KG--TLVRIFNTLDGTL 293 (298)
Q Consensus 279 Dg--t~IrIWd~~tg~~ 293 (298)
++ ..|.+||+.+++.
T Consensus 351 ~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSV 367 (430)
T ss_pred cCCceEEEEEECCCCCE
Confidence 43 1278899988754
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=9.5e-06 Score=71.30 Aligned_cols=207 Identities=18% Similarity=0.238 Sum_probs=125.6
Q ss_pred cCccchhhhhccccccc------cCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCcccCCCCCCeEEEEEcCCCCEEEEE
Q 022387 32 VSSEDQTDQLQSLESFS------SMPQDEPDSFSPS--IPESNPNYQMPLPSPAESTSSSPPPTLLHISFNQDHGCFAAG 103 (298)
Q Consensus 32 ~~~~~~~~~~~~~~~~~------~~p~~~p~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~fs~dg~~lasg 103 (298)
+|..|||.-++...... .+|...|....+. .|...+........+.......|.-.|.+|+++.|+..+.++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88999998776644211 2333333332222 233233333334444556667888899999999999999998
Q ss_pred cCCeEEEEEcCCCceEEEEe-ee-c-----CCceEEEEEecC-CCEEEEEeCCCCCCCCCCeEEEEeCCCCc-E-----E
Q 022387 104 TDHGFRIYNCDPFREIFRRD-FE-R-----GGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQSR-C-----I 169 (298)
Q Consensus 104 s~~gi~vw~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~iWD~~~~~-~-----~ 169 (298)
.+=.|-+|+++-....+... .. + ..-+...++++. ++.++.++ +.|+|||-|++..- | +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-------SKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-------SKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-------CCCcEEEeechhhhhhcchhhh
Confidence 77778899987544333221 00 0 011233444443 45666666 56999999988421 1 1
Q ss_pred EEe-------ec----CCceEEEEEeCCeEEEE-EC-CeEEEEEc-CCCeEEEEEeccCCCc-------------ceEEE
Q 022387 170 GEL-------SF----RSEVRSVKLRRDRIIVV-LE-QKIFVYNF-ADLKLLHQIETIANPK-------------GLCAV 222 (298)
Q Consensus 170 ~~~-------~~----~~~v~~v~~~~~~l~v~-~~-~~I~iwd~-~~~~~i~~~~~~~~~~-------------~~~~~ 222 (298)
.+. .| -..|..+.|+..+-.+. -+ -+|++||+ ...+++.+++.|..-. .-..+
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 111 11 12466677877644444 34 69999999 6788888888775311 12344
Q ss_pred EeCCCCeEEEEecCCCceEEEEEc
Q 022387 223 SQGVGSLVLVCPGLQKGQVRVEHY 246 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg~v~i~~~ 246 (298)
+++++...+. +|+.+..+++++.
T Consensus 336 ~~sg~~~~v~-TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 336 SWSGNDSYVM-TGSYNNVFRVFNL 358 (433)
T ss_pred EEcCCcceEe-cccccceEEEecC
Confidence 5666667777 5999999999873
No 257
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=9e-05 Score=69.34 Aligned_cols=192 Identities=11% Similarity=0.043 Sum_probs=114.4
Q ss_pred CeEEEEEcCCCCE-EEEEcC-C-e--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 87 TLLHISFNQDHGC-FAAGTD-H-G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 87 ~V~~v~fs~dg~~-lasgs~-~-g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
....-.|+|||+. ++..+. + . +.++|+.+++......+ .+......+++++..+++..... .+..|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~--~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS--QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC--CCcEEeeEECCCCCEEEEEEccC----CCcEEEEE
Confidence 6678999999984 664333 2 2 55778877665333332 44455667889998887765422 24678888
Q ss_pred eCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 162 DDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 162 D~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
|+..+................|+++ .++...+ ..|.++|+.+++..+.... ... .. .+++|+..+++..
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~--~~SPDG~~Ia~~~ 337 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NS--SVSTYKNYIVYSS 337 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--Cc--eECCCCCEEEEEE
Confidence 9887764432233322334467764 4555554 2788889877665322211 111 12 4455567777655
Q ss_pred CCC------c--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC--EEEEEECCC
Q 022387 236 LQK------G--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLD 290 (298)
Q Consensus 236 s~d------g--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt--~IrIWd~~t 290 (298)
... + .|.+.+...+....+... .......|+|||+.|+-.+.++. .+-+.++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 443 3 566677777766655543 23346889999998877665432 245556544
No 258
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.50 E-value=3.7e-06 Score=84.15 Aligned_cols=150 Identities=11% Similarity=0.070 Sum_probs=93.7
Q ss_pred cCCCEEEEEeCCCCCCCCCCeEEEEeCCCC--c-----EEEEee-cCCceEEEEE--eCCeEEEEE-CCeEEEEEcCCC-
Q 022387 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS--R-----CIGELS-FRSEVRSVKL--RRDRIIVVL-EQKIFVYNFADL- 204 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~--~-----~~~~~~-~~~~v~~v~~--~~~~l~v~~-~~~I~iwd~~~~- 204 (298)
.++.++++++ .||+||+||.++- . ...++. ..+++.++.+ +.+.+++++ ||.|++.++...
T Consensus 1059 ~~~s~FvsgS-------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1059 EHTSLFVSGS-------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred CCCceEEEec-------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 3345666655 7899999998651 1 222233 2346666654 567777776 589999988541
Q ss_pred -e-----EEEEEeccCCCcceE---EEEeCCCCeEEEEecCCCceEEEEEcCCcce-Ee--ecccccceeEEEECCCCCE
Q 022387 205 -K-----LLHQIETIANPKGLC---AVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KF--IMAHDSRIACFALTQDGQL 272 (298)
Q Consensus 205 -~-----~i~~~~~~~~~~~~~---~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~--~~~H~~~V~~l~fspdg~~ 272 (298)
+ ..+....+.. ..++ ++..+.....+++ +...+.|..||...... .+ ..--.+.|++++.+|.+.+
T Consensus 1132 ~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1132 VSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred cccceeeeeecccccCC-CceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence 1 1111111111 1122 2222222224554 78888888899876532 22 2233578999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCcEEEe
Q 022387 273 LATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 273 lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
|++|..-|. +-+||++=+..+.+
T Consensus 1210 lviGts~G~-l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1210 LVIGTSRGQ-LVLWDLRFRVPILS 1232 (1431)
T ss_pred EEEecCCce-EEEEEeecCceeec
Confidence 999999998 99999997776644
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=7.1e-05 Score=68.51 Aligned_cols=123 Identities=14% Similarity=0.047 Sum_probs=88.0
Q ss_pred CCCcccCCCCCCeEEEEEcCCCCEEEEEcCCe--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 76 ~~~~~~~~~~~~V~~v~fs~dg~~lasgs~~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
..+++...++..|+-..+.-+++-++.|..+| +.||+.++.+...... .-+.+..+.++.++..++++.
T Consensus 350 ~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaN------- 420 (668)
T COG4946 350 DGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVAN------- 420 (668)
T ss_pred CCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEc-------
Confidence 34566677888899999999999899998766 6799999887433222 246778888888888777766
Q ss_pred CCCeEEEEeCCCCcEEEE-eecCCceEEEEEeCCeEEEEE-------CCeEEEEEcCCCeEE
Q 022387 154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKLL 207 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~-~~~~~~v~~v~~~~~~l~v~~-------~~~I~iwd~~~~~~i 207 (298)
....+-+.|+.++..... -.-..-|+.+.||++.-.++- .+.|++||+.+++..
T Consensus 421 dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 421 DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 446677778988865322 222346788889887544442 268999999876654
No 260
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=8.2e-07 Score=82.03 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=95.4
Q ss_pred EeecC-CceEEEEEeCCeEEEE--EC-CeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387 171 ELSFR-SEVRSVKLRRDRIIVV--LE-QKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (298)
Q Consensus 171 ~~~~~-~~v~~v~~~~~~l~v~--~~-~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~ 245 (298)
++..+ +-|.++.|+.++.+++ .+ -.+.|||.-..|+++.+.+ |...+.++.|-|...+.+++ +|..|..|+++|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~-sgAgDk~i~lfd 123 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL-SGAGDKLIKLFD 123 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE-eccCcceEEEEe
Confidence 34444 5789999987654443 33 4899999998999999876 76777888888887777776 699999999999
Q ss_pred cCCc-----------ceEeecccccceeEEEECCCC-CEEEEEeCCCCEEEEEECCC
Q 022387 246 YASK-----------RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 246 ~~~~-----------~~~~~~~H~~~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~t 290 (298)
++.. +...+.+|...|..|+-.|++ ..|-++|+||+ ||-+|++.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiRE 179 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIRE 179 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccC
Confidence 8731 223567899999999999998 89999999999 99999986
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.45 E-value=1e-05 Score=71.05 Aligned_cols=196 Identities=11% Similarity=0.230 Sum_probs=120.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcC-CCc-eEEEE-eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCD-PFR-EIFRR-DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
+.+++++.++++...|.+|-+.| +-=+.+. ... ..+.+ ..+|...+..+-+.-....+++.+ .|+. ..
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-------~dk~-~~ 139 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-------KDKQ-FA 139 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-------cccc-eE
Confidence 45899999999999999999866 3344332 111 11111 111444555544444444444444 3343 34
Q ss_pred EeC-CCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEc--CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 161 WDD-HQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 161 WD~-~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~--~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
|-. +.++-+....+.....++.+.-....+.. .+.|.+-.+ ....++.++.+|... ..+.++++...+|. +|.
T Consensus 140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~Wd~~~~~Lf-Sg~ 216 (404)
T KOG1409|consen 140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKWDPGQRLLF-SGA 216 (404)
T ss_pred EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEEcCCCcEEE-ecc
Confidence 543 33433333333222222222211112221 244444433 556778888877554 44556776666666 699
Q ss_pred CCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 237 QKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 237 ~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
.|-.+.+||+..++ ...+.+|...|..++.-+--+.|.+++.||. |-+||+....
T Consensus 217 ~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~r 273 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVKR 273 (404)
T ss_pred ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecccee
Confidence 99999999998765 3478899999999999998999999999999 9999987643
No 262
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.44 E-value=6.3e-06 Score=70.95 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=89.6
Q ss_pred CCCeEEEEeCCCCcEEEEeecC------C-ceEEEEEe--CCeEEEEE-CCeEEEEEcCCCe--EEEEEeccCCCcceEE
Q 022387 154 PLNKVMIWDDHQSRCIGELSFR------S-EVRSVKLR--RDRIIVVL-EQKIFVYNFADLK--LLHQIETIANPKGLCA 221 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~------~-~v~~v~~~--~~~l~v~~-~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~ 221 (298)
..|.|.++-.........++.- . ...++.|+ ...+++.. .+.+.+-+...+. .+++.+.|......+.
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence 3466777754433322222211 1 13444554 34555543 3677755554443 3447788877777777
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEcCCcc--eE-eecccccceeEEEEC-CCCCEEEEEeCCCCEEEEEECCC-CcEE
Q 022387 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR--TK-FIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLD-GTLL 294 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~--~~-~~~~H~~~V~~l~fs-pdg~~lAt~S~Dgt~IrIWd~~t-g~~l 294 (298)
|+... .-++++|+.||.+.-||..-.. +. ..+.|...|.+|.=| |.+.++||||.|.. ||+||.++ |+.+
T Consensus 173 f~~~~--pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 173 FSDKE--PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPL 247 (339)
T ss_pred cccCC--CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCcc
Confidence 76543 3455579999999999998222 22 356799999999988 56899999999999 99999995 4443
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=3.8e-06 Score=72.87 Aligned_cols=201 Identities=14% Similarity=0.248 Sum_probs=113.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCc-eEE--EEeee-c------------CCceEEEEEecCC--CEEEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIF--RRDFE-R------------GGGIGVVEMLFRC--NILALV 145 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~-~~~--~~~~~-~------------~~~~~~~~~~~~~--~~~~~~ 145 (298)
...|++|.|...|.|||+|..+| +.+|.-.... +.+ ..+|+ | +..+..+.|.-++ +.+.++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 34899999999999999998877 6677543221 111 11111 1 2234455554433 234454
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcE-------------------E--------EEeec-----------------CCceEEE
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRC-------------------I--------GELSF-----------------RSEVRSV 181 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~-------------------~--------~~~~~-----------------~~~v~~v 181 (298)
+ .|++|++|.+..... + ..+.. .-.+.++
T Consensus 106 t-------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 106 T-------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred c-------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 5 689999998654310 0 00111 1134556
Q ss_pred EEeCCe--EEEEECCeEEEEEcCCCe---EEEEEeccC-----CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-
Q 022387 182 KLRRDR--IIVVLEQKIFVYNFADLK---LLHQIETIA-----NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR- 250 (298)
Q Consensus 182 ~~~~~~--l~v~~~~~I~iwd~~~~~---~i~~~~~~~-----~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~- 250 (298)
.++.+. ++.+.+=.|.+|++.-.. .+..++.|. ..+.+..|++.. +..+.+ .+..|.|.+-|+....
T Consensus 179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmY-SsSkG~Ikl~DlRq~al 256 (460)
T COG5170 179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMY-SSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEE-ecCCCcEEehhhhhhhh
Confidence 666543 223333488999884211 122333332 123344555543 234443 6889999997776321
Q ss_pred ----eE------------eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEe
Q 022387 251 ----TK------------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQE 296 (298)
Q Consensus 251 ----~~------------~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg-~~l~~ 296 (298)
.+ -+..-.+.|..+.|+++|+|+++-+.- .|+|||++.. .++++
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm~k~pikT 317 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNMAKNPIKT 317 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEecccccCCcee
Confidence 11 122334578999999999999988644 4999999864 34544
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00026 Score=62.76 Aligned_cols=201 Identities=11% Similarity=0.165 Sum_probs=128.6
Q ss_pred CeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEE--EeeecCCc----------eEEEEEecCCCEEEEEeCCCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFR--RDFERGGG----------IGVVEMLFRCNILALVGGGPDPQ 152 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
+-+.|+++++|++|+++.- .| |.++-++..+.+.. ....|.+. +-...+.+++++++++.-|.
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~--- 166 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT--- 166 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC---
Confidence 3388999999999999975 33 77998765332111 11113333 55666778888888877554
Q ss_pred CCCCeEEEEeCCCCcEEEE----eecCCceEEEEEeCCeEE--EEE--CCeEEEEEcCCC-eEEEEEecc-------CCC
Q 022387 153 YPLNKVMIWDDHQSRCIGE----LSFRSEVRSVKLRRDRII--VVL--EQKIFVYNFADL-KLLHQIETI-------ANP 216 (298)
Q Consensus 153 ~~d~~v~iWD~~~~~~~~~----~~~~~~v~~v~~~~~~l~--v~~--~~~I~iwd~~~~-~~i~~~~~~-------~~~ 216 (298)
-.|.+|++..+..... +.-..--.-+.||++.-+ +.. +++|.+|..... ..+..++.+ ...
T Consensus 167 ---Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 167 ---DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred ---ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 3589999987654322 222234566889986433 333 589999998652 333344322 233
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceE---eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC--
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-- 289 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~-- 289 (298)
.+.-+++-++|+.+|-++-.....|.++.+.. ..+. ...-+....+...|+++|++|+.+.+|+..|.||...
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 45566777777788886544445666655543 2232 2223444589999999999999999988779999876
Q ss_pred CCcE
Q 022387 290 DGTL 293 (298)
Q Consensus 290 tg~~ 293 (298)
+|++
T Consensus 324 TG~L 327 (346)
T COG2706 324 TGRL 327 (346)
T ss_pred CceE
Confidence 4543
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.40 E-value=1.7e-06 Score=89.40 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCCeEEEEeCCCCcEEEEeecC--CceEEEEEeC--CeEEE-EECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFR--SEVRSVKLRR--DRIIV-VLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~~~--~~l~v-~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
.|+.|++|....++.+..+... ..|..+.|+. +.+.+ ..+|.+.+|-+. .++....+.|.. ..-+|.+-+
T Consensus 2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk--~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK--ALSDFRFIG-- 2302 (2439)
T ss_pred CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCc--cccceeeee--
Confidence 6799999999998887766643 4677777764 33333 357899999887 445555555543 333443333
Q ss_pred eEEEEec--CCCceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEecC
Q 022387 229 LVLVCPG--LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEGC 298 (298)
Q Consensus 229 ~~la~sG--s~dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~~ 298 (298)
..++.+| +.++.+.+||....... .-++|.+.++++++-|..++|.|||.+|. |.|||++-.+++|+|+
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHHHHHHHhh
Confidence 3444334 56889999997654322 34899999999999999999999999999 9999999998888763
No 266
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.37 E-value=8.2e-05 Score=65.21 Aligned_cols=202 Identities=12% Similarity=0.090 Sum_probs=119.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC--CC------
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP--DP------ 151 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 151 (298)
....+.+.+++|||||+.|..-++ +- |.||.+.+.+..+...- +..+..+.+..++...++++--+ +.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 345568999999999988777776 44 66999998877655542 56667778888888777765321 10
Q ss_pred --------------------CC-CCCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEE-CCeEEEEEcCCCeE-
Q 022387 152 --------------------QY-PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVL-EQKIFVYNFADLKL- 206 (298)
Q Consensus 152 --------------------~~-~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~-~~~I~iwd~~~~~~- 206 (298)
.. +++-+.+||---.-.+....-.-.+..+.+++ ++++++. |+.+|+.+--+.+.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 00 13446778742221211222223456666665 3333332 34554433221111
Q ss_pred -----------------------------------------------------------EEEEec---cCC---CcceEE
Q 022387 207 -----------------------------------------------------------LHQIET---IAN---PKGLCA 221 (298)
Q Consensus 207 -----------------------------------------------------------i~~~~~---~~~---~~~~~~ 221 (298)
+++++. ..+ .++.++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 111110 011 123456
Q ss_pred EEeCCCCeEEEEecCCCc---eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 222 VSQGVGSLVLVCPGLQKG---QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg---~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
|++|. .++|+ ..|+ .+.+||+.+.++........+|+...|.|....|+.+--... +.+|...-
T Consensus 326 fs~Ds--~y~aT--rnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~sr-LY~W~psg 392 (447)
T KOG4497|consen 326 FSCDS--TYAAT--RNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSR-LYFWAPSG 392 (447)
T ss_pred ecCCc--eEEee--ecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCce-EEEEcCCC
Confidence 66554 77774 3333 566799998887766667789999999999877777754555 77887554
No 267
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.33 E-value=6.7e-06 Score=69.83 Aligned_cols=153 Identities=14% Similarity=0.192 Sum_probs=93.2
Q ss_pred CCCCeEEEEEcC-CCC--EEEEEcCCe-EEEEEcCCCceEEEEee---------ecCCceEEEEEecCCCEEEEEeCCCC
Q 022387 84 PPPTLLHISFNQ-DHG--CFAAGTDHG-FRIYNCDPFREIFRRDF---------ERGGGIGVVEMLFRCNILALVGGGPD 150 (298)
Q Consensus 84 ~~~~V~~v~fs~-dg~--~lasgs~~g-i~vw~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
..+.|.|..+.- +++ +|+.|-+.| +.+||+.+......... .|...+..+++....+.-+..+
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg---- 224 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG---- 224 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC----
Confidence 345677777543 444 345666677 77999987632221110 0455555555543222222222
Q ss_pred CCCCCCeEEEEeCCC--CcEE--EEeec-CCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEeccCCCcceEEE
Q 022387 151 PQYPLNKVMIWDDHQ--SRCI--GELSF-RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (298)
Q Consensus 151 ~~~~d~~v~iWD~~~--~~~~--~~~~~-~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~ 222 (298)
.+.++..|.+.. +.+. .++.. +.-|..+..-++..+.++ |+.||||..++++++..++-|...+..++|
T Consensus 225 ---a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 225 ---ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF 301 (323)
T ss_pred ---ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence 456788887654 3321 12222 224555666665544443 689999999999999999888765555555
Q ss_pred EeCCCCeEEEEecCCCceEEEEEc
Q 022387 223 SQGVGSLVLVCPGLQKGQVRVEHY 246 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg~v~i~~~ 246 (298)
+ ++..++| +++.|+.|.+|++
T Consensus 302 s--pd~~lmA-aaskD~rISLWkL 322 (323)
T KOG0322|consen 302 S--PDCELMA-AASKDARISLWKL 322 (323)
T ss_pred C--CCCchhh-hccCCceEEeeec
Confidence 5 4558888 4999999999975
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.33 E-value=4.6e-05 Score=70.11 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC--------CCCCCCe
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--------PQYPLNK 157 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~ 157 (298)
-++..++|||.|++|++....+|.+|.-.....+.+.. ...+.-+.+++...+|.+=..... ....++.
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred cchhheeecCcchheehhhccceEEccccchhheeeee---cCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 37889999999999999999999999887776554444 355666666666666654321110 1224567
Q ss_pred EEEEeCCCCcEEEEeecCC-c-----eEEEEEeCCeEEEEECCeEEEEEc
Q 022387 158 VMIWDDHQSRCIGELSFRS-E-----VRSVKLRRDRIIVVLEQKIFVYNF 201 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~~-~-----v~~v~~~~~~l~v~~~~~I~iwd~ 201 (298)
+.+||..++..+..+.... + +.....+..+.+-...+.++|+++
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~ 159 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI 159 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec
Confidence 9999999999988876542 2 333333444444445678888886
No 269
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.00092 Score=59.06 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=118.9
Q ss_pred CeEEEEEcC-CCCEEEEEcCCe--EEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 87 TLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 87 ~V~~v~fs~-dg~~lasgs~~g--i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
+...++.+| ++..+|.+-.-| ..+||+.+.+........ ..+=.+...++.++..|++.-...+ ...|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--TGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--CCcEEEEEEE
Confidence 455788899 567788888744 559999888765544321 1112345667788888776543221 1458899999
Q ss_pred CC-CCcEEEEeecCC-ceEEEEEeCCe--EEEEEC-------------------CeEEEEEcCCCeEEEEEec--cCCCc
Q 022387 163 DH-QSRCIGELSFRS-EVRSVKLRRDR--IIVVLE-------------------QKIFVYNFADLKLLHQIET--IANPK 217 (298)
Q Consensus 163 ~~-~~~~~~~~~~~~-~v~~v~~~~~~--l~v~~~-------------------~~I~iwd~~~~~~i~~~~~--~~~~~ 217 (298)
+. .-+.+.++..++ .-..+.+.++. |+++.. ..+.+.|..+++++.+..- ..+..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 99 456667776543 23334455544 555432 1455556666766655332 11111
Q ss_pred ceEEEEeCCCCeEEEEecCCCc-------eEEEEEcCCcceEe-------ecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYASKRTKF-------IMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg-------~v~i~~~~~~~~~~-------~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
.+=.+..++++..++ ..-..| .|-++..... +.. ...-...|-+|+++++|.++|..|--|..+
T Consensus 164 SiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 222222233323222 122111 1111222211 111 123357899999999999998888777779
Q ss_pred EEEECCCCcEEEe
Q 022387 284 RIFNTLDGTLLQE 296 (298)
Q Consensus 284 rIWd~~tg~~l~~ 296 (298)
.+||..+|+++..
T Consensus 242 ~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 242 AVWDAATGRLLGS 254 (305)
T ss_pred EEEECCCCCEeec
Confidence 9999999998764
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.29 E-value=0.00023 Score=65.22 Aligned_cols=172 Identities=12% Similarity=0.037 Sum_probs=113.0
Q ss_pred EcC-CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCC-eEEEEeCCCCcEEE
Q 022387 93 FNQ-DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN-KVMIWDDHQSRCIG 170 (298)
Q Consensus 93 fs~-dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~v~iWD~~~~~~~~ 170 (298)
|++ +|+++|.-+.+.+-|.+.-..-. ....+.+.+.-....-+++.++++. .|+ .+-|+|.++++..+
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt-------~dgD~l~iyd~~~~e~kr 396 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGT-------NDGDKLGIYDKDGGEVKR 396 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCee---EEcCCCCceEEEEEccCCcceEEec-------cCCceEEEEecCCceEEE
Confidence 453 78999998887755544322211 1111355677777776777777766 455 79999999988766
Q ss_pred EeecCCceEEEEEeCCe--EEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC----ceEEE
Q 022387 171 ELSFRSEVRSVKLRRDR--IIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----GQVRV 243 (298)
Q Consensus 171 ~~~~~~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d----g~v~i 243 (298)
....-+.|.++..+++. ++++.+ ..|.++|+.+++.. .+ .......+..|.++++..++|+ +--+ ..|++
T Consensus 397 ~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~i-dkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Ikl 473 (668)
T COG4946 397 IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LI-DKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKL 473 (668)
T ss_pred eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-Ee-cccccceeEEEEEcCCceeEEE-ecCcceeeeeEEE
Confidence 55555788898888763 334433 47788888887752 22 2234456778888888899997 4444 47888
Q ss_pred EEcCCcceEeecccccceeEEEECCCCCEEEEEe
Q 022387 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSS 277 (298)
Q Consensus 244 ~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S 277 (298)
+|+.+.++.-...-++.=.+=||.|||++|-=-|
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9998876554333334445568999998765443
No 271
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=3.3e-05 Score=68.87 Aligned_cols=201 Identities=14% Similarity=0.141 Sum_probs=123.5
Q ss_pred CCeEEEEEcCCCCE-EEEE--cCCeEEEEEcCCCceEEEE----eeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 86 PTLLHISFNQDHGC-FAAG--TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 86 ~~V~~v~fs~dg~~-lasg--s~~gi~vw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
.+|..++|.-|++. +..+ .++-+..+..+...+.... .. +.+...+..+......++++. .+|.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc~-------~sG~l 127 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITCV-------SSGNL 127 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEEe-------cCCcE
Confidence 47888888877652 2233 2344455555444332221 00 122222333333344555555 45889
Q ss_pred EEEeCCCCc----EEEEeecCCceEEEEEeC---CeEEEEE-C--CeEEEEEcCCCeEEEEEeccC-------CCcceEE
Q 022387 159 MIWDDHQSR----CIGELSFRSEVRSVKLRR---DRIIVVL-E--QKIFVYNFADLKLLHQIETIA-------NPKGLCA 221 (298)
Q Consensus 159 ~iWD~~~~~----~~~~~~~~~~v~~v~~~~---~~l~v~~-~--~~I~iwd~~~~~~i~~~~~~~-------~~~~~~~ 221 (298)
.+|....+- ....+.....+..+.-++ ..++.++ . +.+++||+.+.+.+.+-+-.. -|+...+
T Consensus 128 ~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 128 QVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 999987432 233445555555555443 2222232 2 579999998776655433221 1333344
Q ss_pred EEeCCC--CeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 222 VSQGVG--SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 222 ~s~~~d--~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+.+-+. +..|| +++.-+.|++||.... ++..+.--..+|+++..-|+|+++.+|-.-|. +..||++.++++.-
T Consensus 208 i~Fl~g~~~~~fa-t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 208 IRFLEGSPNYKFA-TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGC 284 (412)
T ss_pred ceecCCCCCceEE-EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeecc
Confidence 433332 56676 4899999999998753 45677777889999999999999999999998 99999999987643
No 272
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.00044 Score=62.35 Aligned_cols=179 Identities=12% Similarity=0.216 Sum_probs=110.4
Q ss_pred eEEEEEcCCCceEEEEeeecCCceEEEE-EecC------CCEEEEEeC---CCCCCCCCCeEEEEeCCCC-------cEE
Q 022387 107 GFRIYNCDPFREIFRRDFERGGGIGVVE-MLFR------CNILALVGG---GPDPQYPLNKVMIWDDHQS-------RCI 169 (298)
Q Consensus 107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~---~~~~~~~d~~v~iWD~~~~-------~~~ 169 (298)
.++|.|-.+.+.+....+..+..+.+++ +.+. ..+++++++ +++.....|.|.++++.+. +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 3677787777766666664333333333 3333 344444443 2211111288999999884 234
Q ss_pred EEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcC
Q 022387 170 GELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYA 247 (298)
Q Consensus 170 ~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~ 247 (298)
.+....+.|.++..-.+.++++.++.|.+|++...+.+........+..++++.... .++++ |+....+.+ |+..
T Consensus 83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~v-gD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILV-GDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEE-EESSSSEEEEEEETT
T ss_pred EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEE-EEcccCEEEEEEEcc
Confidence 455677899999877888999999999999997666223333333444666666654 35554 676666666 5654
Q ss_pred CcceEeecc--cccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 248 SKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 248 ~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
...+..+.. ....+++++|-+|+..++.+..+|. +.++...
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYN 202 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEEC
Confidence 444443332 3445899999877789999999999 9999876
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=0.0014 Score=58.16 Aligned_cols=197 Identities=17% Similarity=0.189 Sum_probs=125.1
Q ss_pred CCeEEEEEcCCCCEEEEEcC----CeEEEEEcCC--CceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 86 PTLLHISFNQDHGCFAAGTD----HGFRIYNCDP--FREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~----~gi~vw~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
...+-++|+|++++|.++-. .++.-|.++. ++..+..... .+.+.+.+++..++..++.+.- .-+.|
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g~v 113 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSGSV 113 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCceE
Confidence 46778999999998888754 3477888876 3433322221 2444578888888888888773 34889
Q ss_pred EEEeCCC-Cc---EEEEeecCC----------ceEEEEEeCCe-EEEEEC---CeEEEEEcCCCeEEEEEeccCCC---c
Q 022387 159 MIWDDHQ-SR---CIGELSFRS----------EVRSVKLRRDR-IIVVLE---QKIFVYNFADLKLLHQIETIANP---K 217 (298)
Q Consensus 159 ~iWD~~~-~~---~~~~~~~~~----------~v~~v~~~~~~-l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~---~ 217 (298)
.++-++. |. .+..+.+.. .+....+.++. .+++.+ ++|.+|++.++++...-...-.+ -
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9998866 32 223333322 37777788765 444433 79999999877653322211111 1
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCC--cceEeeccc---------ccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH---------DSRIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H---------~~~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
.-+.|+++++--+++ .--+++|.+|.++. .++..+.-+ ......|.+++||++|-.+-.--..|-+|
T Consensus 194 RHi~FHpn~k~aY~v--~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 194 RHIVFHPNGKYAYLV--NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred ceEEEcCCCcEEEEE--eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 246777776555555 68899999988775 333333222 23477888999999998883322248888
Q ss_pred ECCC
Q 022387 287 NTLD 290 (298)
Q Consensus 287 d~~t 290 (298)
.+..
T Consensus 272 ~V~~ 275 (346)
T COG2706 272 SVDP 275 (346)
T ss_pred EEcC
Confidence 7763
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0002 Score=67.21 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=92.3
Q ss_pred EEEEEecCCCEEE--EEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC--C----eEEEEE
Q 022387 131 GVVEMLFRCNILA--LVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE--Q----KIFVYN 200 (298)
Q Consensus 131 ~~~~~~~~~~~~~--~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~--~----~I~iwd 200 (298)
..=.|++++..++ .++... ....|.+.++..++..+...+........|+++ .++...+ + .+.+|+
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred ccceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 3346778876533 344321 124588889888765544445555566778876 4554442 2 344467
Q ss_pred cCCC--eEEEEEecc-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEc--C--CcceEeecccccceeEEEECCCCCEE
Q 022387 201 FADL--KLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--A--SKRTKFIMAHDSRIACFALTQDGQLL 273 (298)
Q Consensus 201 ~~~~--~~i~~~~~~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~--~--~~~~~~~~~H~~~V~~l~fspdg~~l 273 (298)
+..+ .....+... ...... .++++|+..|++....+|...+|.+ . .+....+..+...+...+|||||++|
T Consensus 264 ~~~g~~g~~~~lt~~~~~~~~~--p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 264 LETGAIGKPRRLLNEAFGTQGN--PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred cccCCCCcceEeecCCCCCcCC--eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 6542 122233221 122223 3445566777765566776666543 2 22344555566678899999999999
Q ss_pred EEEeCCC--CEEEEEECCCCcEE
Q 022387 274 ATSSTKG--TLVRIFNTLDGTLL 294 (298)
Q Consensus 274 At~S~Dg--t~IrIWd~~tg~~l 294 (298)
|..+.++ ..|.+||+.+|+..
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeE
Confidence 8776542 23899999988653
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=7.8e-06 Score=71.86 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=113.0
Q ss_pred EEEEcC--CCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC-
Q 022387 90 HISFNQ--DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS- 166 (298)
Q Consensus 90 ~v~fs~--dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~- 166 (298)
.++|+- -|-.+++|...++.+-|++++....-.. .+++....+....+++.-.. ..|.|...|++.+
T Consensus 216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~s---ksDVfAlQf~~s~nLv~~Gc-------RngeI~~iDLR~rn 285 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQS---KSDVFALQFAGSDNLVFNGC-------RNGEIFVIDLRCRN 285 (425)
T ss_pred hhhhhhccceeeecccccceeEEEEeeccccccccc---chhHHHHHhcccCCeeEecc-------cCCcEEEEEeeecc
Confidence 346663 3456778888888898998875433222 45555555555555554443 5688999999864
Q ss_pred ----cEEEEeecCCceEEEE---EeCCeEEEE-ECCeEEEEEcCCCeE---EEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 167 ----RCIGELSFRSEVRSVK---LRRDRIIVV-LEQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 167 ----~~~~~~~~~~~v~~v~---~~~~~l~v~-~~~~I~iwd~~~~~~---i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
.+.+.+-+.+.|+++. |+.+.+++. .+++|++||++-.++ +.++.+|.+-..-+-+..++....++ ++
T Consensus 286 qG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~-s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF-SV 364 (425)
T ss_pred cCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE-Ec
Confidence 4566677778888865 455555544 469999999987777 88999987766556666666656666 48
Q ss_pred CCCceEEEEEcCCcceE-eec----ccccceeEEEEC
Q 022387 236 LQKGQVRVEHYASKRTK-FIM----AHDSRIACFALT 267 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~~-~~~----~H~~~V~~l~fs 267 (298)
+.|-..+||.++...+. +++ +-...+.+++|.
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999876544 332 222346666664
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=0.00085 Score=62.61 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC---CCEEEEEECCCC
Q 022387 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDG 291 (298)
Q Consensus 215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIWd~~tg 291 (298)
.|+..+.+++++...-+ +-|----.+.|++.+.+.+..+. .++=+++-|+|.|++|+-+|.+ |. |-|||+.+.
T Consensus 271 GPVhdv~W~~s~~EF~V-vyGfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~ 346 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAV-VYGFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNR 346 (566)
T ss_pred CCceEEEECCCCCEEEE-EEecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc-eEEEeccch
Confidence 44445555554432223 33666667777777766655443 4677899999999999999875 57 999999998
Q ss_pred cEEEec
Q 022387 292 TLLQEG 297 (298)
Q Consensus 292 ~~l~~~ 297 (298)
|+|-.+
T Consensus 347 K~i~~~ 352 (566)
T KOG2315|consen 347 KLIAKF 352 (566)
T ss_pred hhcccc
Confidence 887543
No 277
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.19 E-value=5.3e-05 Score=74.13 Aligned_cols=179 Identities=15% Similarity=0.222 Sum_probs=121.3
Q ss_pred CCEEEEEc-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (298)
Q Consensus 97 g~~lasgs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~ 175 (298)
+..+.-|+ .+.+..+|+.+.++...... +.-.+.-+..++..+.++. ..|+|.+=|.++.+.++++..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---~a~~v~imR~Nnr~lf~G~-------t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV---SASGVTIMRYNNRNLFCGD-------TRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec---cCCceEEEEecCcEEEeec-------ccceEEeecCCcCceeeeeecc
Confidence 33444444 46677888877766544443 2222334444555544433 5699999999999999999866
Q ss_pred -CceEEEEEeCCeEEEEE----------CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387 176 -SEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (298)
Q Consensus 176 -~~v~~v~~~~~~l~v~~----------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~ 244 (298)
..+..+..+.+.++.|+ |.=|+|||++.++.+.-+.-+..| ..+.|.|.-...+.+ .+..|...+-
T Consensus 217 s~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V--~S~sGq~q~v 293 (1118)
T KOG1275|consen 217 SGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV--TSQSGQFQFV 293 (1118)
T ss_pred ccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE--Eecccceeec
Confidence 47888889999888875 246899999988877666655444 344555554334444 5777888886
Q ss_pred E---cCCcceEe--ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 245 H---YASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 245 ~---~~~~~~~~--~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
| +.+-.... +.-..+.+..+++|++|..||-|-.+|. |.+|.-.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~~ 342 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWADR 342 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-EeeecCC
Confidence 6 22222222 2223445999999999999999999999 9999833
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=1.7e-05 Score=75.94 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=124.4
Q ss_pred cCCCCCCeEEEEEcCCC-CEEEEEcCCe-EEEEEcCCCce-EEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCC
Q 022387 81 SSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFRE-IFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLN 156 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg-~~lasgs~~g-i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~ 156 (298)
.++|...|+.+.|++.. ..||+.+.+. +-.|++..... .+.... .......+.|.. +++.+|..- .+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlassh--------g~ 180 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSH--------GN 180 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhcc--------CC
Confidence 37888899999999865 5889999887 55999977553 333222 233445566653 455555443 36
Q ss_pred eEEEEeCCCCc-EEEEeecC-CceEEEEEeCC----eEEEEECCeEEEEEcCCCeEE-EEEeccCCCcceEEEEeCCCCe
Q 022387 157 KVMIWDDHQSR-CIGELSFR-SEVRSVKLRRD----RIIVVLEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 157 ~v~iWD~~~~~-~~~~~~~~-~~v~~v~~~~~----~l~v~~~~~I~iwd~~~~~~i-~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
.|++||.+.+. .+..++.+ ..|..+.|++. .+....+++|++||..+.... ....+...++..-.+-+-+++.
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 69999999865 34445443 45666777652 333345799999998543221 1222334455555566666655
Q ss_pred EEEEecCCCceEEEEEcC-----------CcceEeecccccceeEEEECCCC----------CEEEEEeCCCCEEEEEEC
Q 022387 230 VLVCPGLQKGQVRVEHYA-----------SKRTKFIMAHDSRIACFALTQDG----------QLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~-----------~~~~~~~~~H~~~V~~l~fspdg----------~~lAt~S~Dgt~IrIWd~ 288 (298)
.+-. --.+..|-+++-+ ..++.+|.+|+..|-..-|-..+ -.|+|=|.|.+ +|+|-+
T Consensus 261 ~~mp-~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~-lrlWpI 338 (1081)
T KOG0309|consen 261 CIMP-MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT-LRLWPI 338 (1081)
T ss_pred Eecc-ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc-eEeeec
Confidence 5542 2222244443321 23467999999988666554322 37999999999 999987
Q ss_pred CC
Q 022387 289 LD 290 (298)
Q Consensus 289 ~t 290 (298)
.+
T Consensus 339 ~~ 340 (1081)
T KOG0309|consen 339 DS 340 (1081)
T ss_pred cH
Confidence 64
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.15 E-value=0.0018 Score=67.41 Aligned_cols=195 Identities=9% Similarity=0.068 Sum_probs=111.8
Q ss_pred EEEEEcCC-CCEEEEEcC-CeEEEEEcCCCceEEEEeeecC------------CceEEEEEecCCCEEEEEeCCCCCCCC
Q 022387 89 LHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIFRRDFERG------------GGIGVVEMLFRCNILALVGGGPDPQYP 154 (298)
Q Consensus 89 ~~v~fs~d-g~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
..++++++ |.++++-+. +.|++|+.+............. .....+.+..+++.++++..+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~------ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE------ 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC------
Confidence 46788875 555556555 5578888764322111110000 012334444455555555422
Q ss_pred CCeEEEEeCCCCcEEEEeec------------------CCceEEEEEeC--CeEEEEE--CCeEEEEEcCCCeEEEEEec
Q 022387 155 LNKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQIET 212 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~------------------~~~v~~v~~~~--~~l~v~~--~~~I~iwd~~~~~~i~~~~~ 212 (298)
.+.|+++|..++.. .++.. -.....+++++ ..+.++. ++.|++||..++.. ..+.+
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v-~~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT-RVFSG 722 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE-EEEec
Confidence 36789999877543 22211 01234677776 3455553 47999999876653 23321
Q ss_pred cC---------------CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeec----------------------
Q 022387 213 IA---------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---------------------- 255 (298)
Q Consensus 213 ~~---------------~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~---------------------- 255 (298)
.. .....+++++++ ..|.++.+.++.|++|+..+.....+.
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG--~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDL--KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCC--CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 10 011124555544 433334788899999998754322111
Q ss_pred ccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 256 ~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
..-.....|+|+++|.++++-+.+++ |++||..++.+.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~ 838 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVT 838 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEE
Confidence 01123578999999999999999998 999999887654
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.14 E-value=0.001 Score=61.27 Aligned_cols=181 Identities=11% Similarity=0.028 Sum_probs=104.5
Q ss_pred CEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEE----EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe
Q 022387 98 GCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVV----EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (298)
Q Consensus 98 ~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~ 172 (298)
..++.+.. +.+..||.++++.++.... ....... ......+.+++.. .++.+..+|.++++.+.+.
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~--~~~~~~~~~~~sp~~~~~~v~~~~-------~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTYSR--VTPALTLRGSASPVIADGGVLVGF-------AGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEEcc--CCCceeecCCCCCEEECCEEEEEC-------CCCEEEEEEccCCCEeeee
Confidence 34455544 4477888888877666553 1111100 0001123333333 4578999999998876544
Q ss_pred ecCCc-----------e-EEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCc
Q 022387 173 SFRSE-----------V-RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (298)
Q Consensus 173 ~~~~~-----------v-~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg 239 (298)
..... + .......+.+++.. ++.+..||..+++.+.+.... . .....+ . ++.+++ ++.+|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~~--~-~~~vyv--~~~~G 289 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPAV--D-DNRLYV--TDADG 289 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCceE--e-CCEEEE--ECCCC
Confidence 32110 0 11223455555554 689999999999887766531 1 111122 2 224444 57889
Q ss_pred eEEEEEcCCcceE-eeccc-ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 240 QVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 240 ~v~i~~~~~~~~~-~~~~H-~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+..+|..+.... ..... ...+.+... .+.+|.+++.||. |.+||..+|+.+.++
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSREDGSFVARL 346 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCCCCEEEEE
Confidence 9999888766433 33211 112222222 3678888999999 999999999998664
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.13 E-value=1.9e-05 Score=67.10 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=63.3
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce--EeecccccceeEEEECCC-C
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQD-G 270 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~--~~~~~H~~~V~~l~fspd-g 270 (298)
+..++|+++..+.+..- +..-..+.+++.+|..+.+++.|+.||.+-+||...... ..+++|+.+|+.|-|+|. +
T Consensus 159 d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred cceeeeccccccccccc--ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 55666666433322111 111112334444444344444599999999999987643 378999999999999974 7
Q ss_pred CEEEEEeCCCCEEEEEECCC
Q 022387 271 QLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~t 290 (298)
..|.|+|+||. +--||..+
T Consensus 237 ~~Lft~sedGs-lw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGS-LWHWDAST 255 (319)
T ss_pred hheeEecCCCc-EEEEcCCC
Confidence 89999999999 77888653
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.11 E-value=0.00011 Score=63.54 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec---CCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
..++.|++-|+-++++..+| +-+-+......+..... ..+...+....| +++.+.+.+ +|+.+.-||.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~pnlvytGg-------DD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEPNLVYTGG-------DDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCCceEEecC-------CCceEEEEEe
Confidence 46788999999899888766 44222222222221111 134444444443 344444433 5799999999
Q ss_pred CC-CcEEEE--eecCCceEEEEEeCC---eEEEEE-CCeEEEEEcCCCe-EEEEEeccCCCcceEEEEeCCC--CeEEEE
Q 022387 164 HQ-SRCIGE--LSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNFADLK-LLHQIETIANPKGLCAVSQGVG--SLVLVC 233 (298)
Q Consensus 164 ~~-~~~~~~--~~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~~~~~-~i~~~~~~~~~~~~~~~s~~~d--~~~la~ 233 (298)
+- +..+.. ..+..-|.++.-++. .++++. +..|++||.+++. ++.. .....++..|..+|. +.+|+
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---~~v~GGVWRi~~~p~~~~~lL~- 271 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---AKVGGGVWRIKHHPEIFHRLLA- 271 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc---CccccceEEEEecchhhhHHHH-
Confidence 83 333322 234456888877654 444443 5899999998643 3322 222245666655553 23444
Q ss_pred ecCCCceEEE--EEcCCc---ceEeecccccceeEEEECCCCCEEEEEeC-CCCEEE-EEECCCCc
Q 022387 234 PGLQKGQVRV--EHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVR-IFNTLDGT 292 (298)
Q Consensus 234 sGs~dg~v~i--~~~~~~---~~~~~~~H~~~V~~l~fspdg~~lAt~S~-Dgt~Ir-IWd~~tg~ 292 (298)
++..+|.-.+ -+-..+ .....+.|.+-+..-.|.....+|||+|. |+. |+ +|-..++.
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~-~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK-IRQLWLHITGE 336 (339)
T ss_pred HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc-eeeeeeeccCC
Confidence 3666664333 221122 23356778877777778655678999875 666 66 88766653
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=8.5e-06 Score=75.61 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=103.7
Q ss_pred CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC-------cEEEEee-cCCceEEEEEeCCe-EEEEECCeEEE
Q 022387 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVLEQKIFV 198 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~-------~~~~~~~-~~~~v~~v~~~~~~-l~v~~~~~I~i 198 (298)
..+..+...-+.+.++.++ .|++||+|.++.. .|..+++ +..+|..+.|-.+. -++.+++.|++
T Consensus 736 ~~iRai~AidNENSFiSAS-------kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHl 808 (1034)
T KOG4190|consen 736 EKIRAIAAIDNENSFISAS-------KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHL 808 (1034)
T ss_pred HHhHHHHhcccccceeecc-------CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCccee
Confidence 3344444344455666655 7899999997641 1222222 33578888887654 55667899999
Q ss_pred EEcCCCeEEEEEec-c-CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-Eee-----cccccceeEEEECCCC
Q 022387 199 YNFADLKLLHQIET-I-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI-----MAHDSRIACFALTQDG 270 (298)
Q Consensus 199 wd~~~~~~i~~~~~-~-~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-~~~-----~~H~~~V~~l~fspdg 270 (298)
||---++++..+.. . ...++.+..-.+-+..++.+.++...+|++.|...... ..+ .+-++-+++++..+.|
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~G 888 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKG 888 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCc
Confidence 99866665543321 1 12222232222222234443358889999987664331 122 3445679999999999
Q ss_pred CEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 271 QLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
++||.+=..|+ |-+-|.++|+++..+
T Consensus 889 N~lAa~LSnGc-i~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 889 NKLAAALSNGC-IAILDARNGKVINSW 914 (1034)
T ss_pred chhhHHhcCCc-EEEEecCCCceeccC
Confidence 99999988999 999999999988643
No 284
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.02 E-value=1.3e-05 Score=46.40 Aligned_cols=36 Identities=28% Similarity=0.600 Sum_probs=32.7
Q ss_pred eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 251 ~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
...+..|...|++++|++++.++++++.|+. |++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 4467789999999999999999999999999 99996
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.99 E-value=0.0071 Score=51.49 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=103.5
Q ss_pred eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-EEEeC
Q 022387 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRR 185 (298)
Q Consensus 107 gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~ 185 (298)
.+..||..+++.++...+.....-...........+++.+ .++.|..||..+|+.+.++.....+.. .....
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 3567777777776666541001111111222444555554 468999999999999888877554322 35566
Q ss_pred CeEEEEE-CCeEEEEEcCCCeEEEEE-eccCCCc---ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eeccccc
Q 022387 186 DRIIVVL-EQKIFVYNFADLKLLHQI-ETIANPK---GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDS 259 (298)
Q Consensus 186 ~~l~v~~-~~~I~iwd~~~~~~i~~~-~~~~~~~---~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~ 259 (298)
+.+++.. ++.|..+|..+++.+.++ ....... ........+ +.+++ +..+|.|...|.+++.+. ....+..
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYV--GTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEE--EETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEE--EeccCcEEEEecCCCcEEEEeecCCC
Confidence 7777766 579999999999999885 4332111 122333332 23443 466888988887766543 3333321
Q ss_pred c----------eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 260 R----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 260 ~----------V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
. +..-....++ .+..++.++.++.+ |+.+|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE
Confidence 1 1222233355 55556667754666 999998664
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.0024 Score=58.81 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=104.0
Q ss_pred CCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387 97 HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (298)
Q Consensus 97 g~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~ 175 (298)
+..+.+++.+ .+.-+|..+++.++...+ ...+... .....+.+++.+ .++.+..+|..+++.+.+....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~--~~~~~~~-p~v~~~~v~v~~-------~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDL--DERLSGG-VGADGGLVFVGT-------EKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecC--CCCcccc-eEEcCCEEEEEc-------CCCEEEEEECCCCcEeeeeccC
Confidence 5567777665 466888888888777765 2222111 112344455544 4688999999999988776665
Q ss_pred CceEE-EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCc-----ceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387 176 SEVRS-VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (298)
Q Consensus 176 ~~v~~-v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~-----~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~ 248 (298)
..+.+ .....+.+++.. ++.|..||..+++.+.+++...... ....+. + +.+++ +..+|.+...|..+
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~--~~v~~--~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D--GGVLV--GFAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C--CEEEE--ECCCCEEEEEEccC
Confidence 54433 223445555544 5899999999999888776532211 111121 2 23333 67778887777655
Q ss_pred cceE-eeccc-c---c---ceeEEEECC--CCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 249 KRTK-FIMAH-D---S---RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 249 ~~~~-~~~~H-~---~---~V~~l~fsp--dg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.... ..... . . .+..+.-+| .+..+..++.+|. ++.||.++|+.+.+
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWK 266 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEe
Confidence 4332 21100 0 0 000000011 2345555666777 77788777776654
No 287
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.99 E-value=0.0049 Score=54.02 Aligned_cols=194 Identities=13% Similarity=0.194 Sum_probs=116.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEE-------------eeecCCceEEEE--EecCCCEEEEEeCCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVE--MLFRCNILALVGGGPDP 151 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (298)
.|..+..-++-+.|++=+++.+.+++++........ .....+++...+ -...+....++.
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va----- 111 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA----- 111 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-----
Confidence 499999999888877777788889988654332210 110122333333 112232333333
Q ss_pred CCCCCeEEEEeCCCC-----cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC------------
Q 022387 152 QYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA------------ 214 (298)
Q Consensus 152 ~~~d~~v~iWD~~~~-----~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~------------ 214 (298)
..++|.+|.+... +...++.....+..+.|.++.+.++..+...+.|+.++....-+....
T Consensus 112 --~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 112 --VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred --ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 3478999887652 567788889999999999999999999999999998665533322111
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
.+.....+ +++.+|++ ..+-.+. -+...+... ..-.-...+.++++. ..||...+. +. |-||++.+|++
T Consensus 190 ~~~~~~~~---~~~e~Ll~--~~~~g~f-v~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 190 KPLGIFQL---SDNEFLLC--YDNIGVF-VNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NS-IEVRSLETGEL 259 (275)
T ss_pred CceEEEEe---CCceEEEE--ecceEEE-EcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CE-EEEEECcCCcE
Confidence 12222222 22356653 3332222 333333222 111223467777774 357776664 55 99999999999
Q ss_pred EEec
Q 022387 294 LQEG 297 (298)
Q Consensus 294 l~~~ 297 (298)
++++
T Consensus 260 vQ~i 263 (275)
T PF00780_consen 260 VQTI 263 (275)
T ss_pred EEEE
Confidence 8764
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.98 E-value=1.6e-05 Score=47.83 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=28.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE
Q 022387 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYN 112 (298)
Q Consensus 81 ~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~ 112 (298)
...|...|++|+|+|++.+||+|+.|+ ++|||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357888999999999999999999855 88997
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.97 E-value=0.0092 Score=51.47 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=111.3
Q ss_pred EEEEcC-CCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCc
Q 022387 90 HISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 90 ~v~fs~-dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~ 167 (298)
++.|.+ +|.++.+... +.|..|+.++..... ... .. ...+.+......++++.. +.+.++|..+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~-~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PG-PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--SS-EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CC-CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence 578887 7777777765 446677877765433 332 23 444444423355555552 446777998886
Q ss_pred EEEEeec------CCceEEEEEeCCeEEEEEC-----------CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 168 CIGELSF------RSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 168 ~~~~~~~------~~~v~~v~~~~~~l~v~~~-----------~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
....+.. ......+.+.++..+..++ +.|..++.. ++. ..+........-+++++++ ..
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg--~~ 147 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDG--KT 147 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTS--SE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcc--hh
Confidence 5444433 1245668888765444432 246666655 443 3333222223456666654 44
Q ss_pred EEEecCCCceEEEEEcCC--cce---Eee---cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 231 LVCPGLQKGQVRVEHYAS--KRT---KFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~--~~~---~~~---~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|.++-+..+.|..+++.. ..+ ..+ ..-.+..-.|++..+|++.++.-..+. |.++|.+ |+++.++
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREI 220 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEE
Confidence 443467788888877642 212 122 222234889999999999998877787 9999977 9888764
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.96 E-value=0.0006 Score=60.20 Aligned_cols=152 Identities=11% Similarity=0.142 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCc-eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..|...|..+-|+-.-+++++.+.|.-..|.+-... .+-...+ .... ....++-. .+.++.- .+.|.+
T Consensus 111 ~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~--t~~~~d~~-~~fvGd~------~gqvt~ 179 (404)
T KOG1409|consen 111 LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPA--SALQFDAL-YAFVGDH------SGQITM 179 (404)
T ss_pred hhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--eccC--CCCceeeE-EEEeccc------ccceEE
Confidence 456779999999988888888777665678764322 2211111 0000 00011111 3333321 233333
Q ss_pred E--eCCCCcEEEEeecC-CceEEEEEeCC--eEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 161 W--DDHQSRCIGELSFR-SEVRSVKLRRD--RIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 161 W--D~~~~~~~~~~~~~-~~v~~v~~~~~--~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
- +...-+.+.++..+ ..+.++.|.+. .++.+. +..|.+||+... ...+.+..|.+.+........- ..+.
T Consensus 180 lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t--~~l~- 256 (404)
T KOG1409|consen 180 LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT--RQLI- 256 (404)
T ss_pred EEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh--eeee-
Confidence 3 23334455555544 57888888763 344433 579999999432 3345666666555444333322 3343
Q ss_pred ecCCCceEEEEEcC
Q 022387 234 PGLQKGQVRVEHYA 247 (298)
Q Consensus 234 sGs~dg~v~i~~~~ 247 (298)
|++.||.|.+|+++
T Consensus 257 S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMN 270 (404)
T ss_pred eccCCCeEEEEecc
Confidence 47889999888843
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=4.8e-05 Score=72.91 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=129.8
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEE--EeeecCCceEEEEEecCC--CEEEEEeCCCCCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL 155 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d 155 (298)
++.+-.+.+..+.++|-|+=+|.++.-|+.+-|++....-.+ ..+ .--.++.+.|+.++ .+-++.. ..
T Consensus 19 lsl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~-tpw~vad~qws~h~a~~~wiVst-------s~ 90 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHI-TPWQVADVQWSPHPAKPYWIVST-------SN 90 (1081)
T ss_pred eEEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeecc-CcchhcceecccCCCCceeEEec-------Cc
Confidence 344455678899999999999999999988888864322111 111 12234555665443 3344444 34
Q ss_pred CeEEEEeCCC--CcEEEEe--ecCCceEEEEEeC---CeEEEEE-CCeEEEEEcCCC-eEEEEEeccCCCcceEEEEeCC
Q 022387 156 NKVMIWDDHQ--SRCIGEL--SFRSEVRSVKLRR---DRIIVVL-EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 156 ~~v~iWD~~~--~~~~~~~--~~~~~v~~v~~~~---~~l~v~~-~~~I~iwd~~~~-~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
.+..+|++.. .+.|--+ .+...|+.+.|++ +.++.+. +-.+..||++.. .++..+.........+..+..
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk- 169 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK- 169 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-
Confidence 6677899764 2333222 2234678888875 4455544 579999999764 345554443333334444432
Q ss_pred CCeEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Q 022387 227 GSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+...+| .+....|.+||...+ ++..+++|...|+.++|.. -...+.+++.||+ |+.||.....
T Consensus 170 ~p~vla--sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt 235 (1081)
T KOG0309|consen 170 DPNVLA--SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKST 235 (1081)
T ss_pred Ccchhh--hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccc
Confidence 236666 466668888998754 4668999999999999985 4578889999999 9999988654
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=5e-05 Score=66.87 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=89.9
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeC-CeEEEEE--CCeEEEEEcCCC-----eEEEEEeccCCCcceEEEEeCC
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~-~~l~v~~--~~~I~iwd~~~~-----~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
+..|-+-|++++.. +.|...+.|+++.|+. +.++.++ ++.|..+|++.. .+.+.+- |...+.++.+-.-.
T Consensus 233 sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s 310 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFS 310 (425)
T ss_pred cceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccc
Confidence 45677778877643 2344566899988876 4454443 589999999643 3333333 33333333333222
Q ss_pred CCeEEEEecCCCceEEEEEcCCc-c---eEeecccccceeEEEEC--CCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 227 GSLVLVCPGLQKGQVRVEHYASK-R---TKFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~~-~---~~~~~~H~~~V~~l~fs--pdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+ +.|.+ .+-+|+|.+||.... . +.+..+|...-.-+-+. +....++++++|-. .|||.+++|+++.+.
T Consensus 311 ~-q~Lma-S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy-tRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 311 Q-QKLMA-SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY-TRIWSLDSGHLLCTI 384 (425)
T ss_pred c-ceEee-ccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE-EEEEecccCceeecc
Confidence 2 44443 688999999998643 2 56778885544444443 55667888999998 999999999998763
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.91 E-value=0.0028 Score=64.99 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=113.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcC---C----eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 85 PPTLLHISFNQDHGCFAAGTD---H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~---~----gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
...-..|+|-.||.|+|+.+- . .+|||+-+ +....+-+- -.+--..++|.+.++.+|.+.--. ....
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~----~~~~ 282 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLP----DRHD 282 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcC----CCcE
Confidence 345668999999999998763 2 37799876 333333221 133345678889999888876321 2344
Q ss_pred EEEEeCCCCcEEEEeecC-----CceEEEEEeCC--eEEEEECCeEEEEEcCCCe--EEEEEeccCCCcceEEEEeCCC-
Q 022387 158 VMIWDDHQSRCIGELSFR-----SEVRSVKLRRD--RIIVVLEQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVG- 227 (298)
Q Consensus 158 v~iWD~~~~~~~~~~~~~-----~~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~--~i~~~~~~~~~~~~~~~s~~~d- 227 (298)
|.+|.- +|....+|... ..|..+.|+.+ .|++...+.|.+|-..+.. +.+.+.-... .....+.+++.
T Consensus 283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEK 360 (928)
T ss_pred EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCC
Confidence 555653 44445555442 37889999865 5666667789999987754 1122221111 11111334432
Q ss_pred -CeEEEEecCCCceEEE----EEcCC-----------------cc--eEee-------------cccccceeEEEECCCC
Q 022387 228 -SLVLVCPGLQKGQVRV----EHYAS-----------------KR--TKFI-------------MAHDSRIACFALTQDG 270 (298)
Q Consensus 228 -~~~la~sGs~dg~v~i----~~~~~-----------------~~--~~~~-------------~~H~~~V~~l~fspdg 270 (298)
..+.+ ...+|.+.. |+... .. ++-| -.-..+|.+++|++++
T Consensus 361 p~~L~v--~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 361 PLRLHV--LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN 438 (928)
T ss_pred CCEEEE--EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence 22222 233333333 22110 00 0000 1124689999999999
Q ss_pred CEEEEEeCCCCEEEEEECCC
Q 022387 271 QLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 271 ~~lAt~S~Dgt~IrIWd~~t 290 (298)
..+|.-..||+ |.+|....
T Consensus 439 ~~~avl~~d~~-l~~~~~~~ 457 (928)
T PF04762_consen 439 SRFAVLTSDGS-LSIYEWDL 457 (928)
T ss_pred CeEEEEECCCC-EEEEEecC
Confidence 88999999999 99998554
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=7.5e-06 Score=79.69 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=124.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
+.+...-+|++|+-+.++|++|+..| +++|++.++........ |+..+..++-+.++..+.+.+.. +.--..+
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~-----S~PlsaL 1171 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSS-----SSPLSAL 1171 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccc-----cCchHHH
Confidence 55667889999999999999999866 88999999876655554 67788888877777777766632 2224689
Q ss_pred EeCCC-CcEEEEeecCCceEEEEEeC--C-eEEEEECCeEEEEEcCCCeEEEEEecc----CCCcceEEEEeCCCCeEEE
Q 022387 161 WDDHQ-SRCIGELSFRSEVRSVKLRR--D-RIIVVLEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 161 WD~~~-~~~~~~~~~~~~v~~v~~~~--~-~l~v~~~~~I~iwd~~~~~~i~~~~~~----~~~~~~~~~s~~~d~~~la 232 (298)
|+... ++..+.+.. -.++.|+. . ..+.+..+...+||+.+..++.++-.. ........|++. ..++.
T Consensus 1172 W~~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL 1246 (1516)
T ss_pred hccccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC--cceEe
Confidence 99865 444444433 34555654 2 222333478999999988777764321 111234455554 34443
Q ss_pred EecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 233 ~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.|| .+||..... +..|...+..+.. .|+|.|.-++.-| -|||++|-+++|+
T Consensus 1247 ----ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS------EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 ----NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS------EIWDMRTFKLLHS 1298 (1516)
T ss_pred ----eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec------hhhhhHHHHHHhc
Confidence 445 358876543 3344444433332 5999999888765 3899999887765
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.89 E-value=0.0021 Score=65.86 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=115.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe-EEEE----EcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g-i~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
....|.++.|-+|..-|..+..+| |.+. +.+.......-.+ +.++.++.|+++...++++++ +++|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d~GI~a~~WSPD~Ella~vT~-------~~~l 144 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV--DSGILAASWSPDEELLALVTG-------EGNL 144 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE--cCcEEEEEECCCcCEEEEEeC-------CCEE
Confidence 345899999999998888888877 5566 5555555555555 788999999999999999994 4667
Q ss_pred EEEeCCCCcEEEEeecCC------ceEEEEEeCCeEEE-EECCeEEEEEcCCCeEEEEEecc--CCCcceEEEEeCCCCe
Q 022387 159 MIWDDHQSRCIGELSFRS------EVRSVKLRRDRIIV-VLEQKIFVYNFADLKLLHQIETI--ANPKGLCAVSQGVGSL 229 (298)
Q Consensus 159 ~iWD~~~~~~~~~~~~~~------~v~~v~~~~~~l~v-~~~~~I~iwd~~~~~~i~~~~~~--~~~~~~~~~s~~~d~~ 229 (298)
.+-+ ++-..+.+..... .-.+|-|..+..-. +..++---=.+++.+.. ..... ......+.+++-+||.
T Consensus 145 ~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~-~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 145 LLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP-KVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC-ccccCccccCCCceEEEECCCCc
Confidence 6654 3444555544321 22233332211000 00000000000000000 00000 0123568899999999
Q ss_pred EEEEecC--CC---ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeC--CCCEEEEEECCCCcEE
Q 022387 230 VLVCPGL--QK---GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLL 294 (298)
Q Consensus 230 ~la~sGs--~d---g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~--Dgt~IrIWd~~tg~~l 294 (298)
++|++.- .. -.++||+.+.....+-..-.+--.+++|.|.|.++|+.-. +...|-+|. ++|-.-
T Consensus 223 yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh 293 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH 293 (928)
T ss_pred EEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence 9998543 23 4788899875422222223333567899999999999965 333366666 455443
No 296
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.84 E-value=0.00071 Score=63.71 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=63.8
Q ss_pred eEEEEEcCCCeE--EEEEec-cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCC
Q 022387 195 KIFVYNFADLKL--LHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ 271 (298)
Q Consensus 195 ~I~iwd~~~~~~--i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~ 271 (298)
.-.+|++...+. +..... ....+.+|+.+++. ..++. |..||.|.+||...+. ..+..+.-.++.++|+|+|.
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E--~kLvl-GC~DgSiiLyD~~~~~-t~~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE--DKLVL-GCEDGSIILYDTTRGV-TLLAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCccc--ceEEE-EecCCeEEEEEcCCCe-eeeeeecccceEEEEcCCCc
Confidence 345677644332 211111 23345556665554 66664 8999999999987663 33445566799999999999
Q ss_pred EEEEEeCCCCEEEEEECCCC
Q 022387 272 LLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 272 ~lAt~S~Dgt~IrIWd~~tg 291 (298)
.|+.|+.-|. +.+||+.-.
T Consensus 313 i~~V~s~qGe-lQ~FD~ALs 331 (545)
T PF11768_consen 313 IFVVGSEQGE-LQCFDMALS 331 (545)
T ss_pred EEEEEcCCce-EEEEEeecC
Confidence 9999999998 999998754
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0015 Score=63.29 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=123.5
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCC----------CEEEEEeCCCCCCCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC----------NILALVGGGPDPQYPLN 156 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~d~ 156 (298)
.-.++.|+|.| +||-|+..-|.|-|..+.+.+...+. |...+..+.|.+.+ ..+.++++. ..|
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----ISG 89 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEecc-----ccC
Confidence 45678899987 68999998888988888777767766 67788888886421 123344432 468
Q ss_pred eEEEEeCCCCcEEEEeecCC-ceEEEEEe------CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC-C
Q 022387 157 KVMIWDDHQSRCIGELSFRS-EVRSVKLR------RDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-G 227 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~~~~-~v~~v~~~------~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~-d 227 (298)
.|.+||+..+..+..++++. ++..++|- ++.+++.. ...|.+|+..+++.+.++.-...+.. +|..|| |
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs--~f~~DPfd 167 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS--CFRVDPFD 167 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee--eeeeCCCC
Confidence 99999999988888888764 66666652 24455444 47999999999999887765433333 344443 2
Q ss_pred CeEEEEecCCCceEEE-EEcCCcc-------eEeeccccc-------------------------ceeEEEECCCCCEEE
Q 022387 228 SLVLVCPGLQKGQVRV-EHYASKR-------TKFIMAHDS-------------------------RIACFALTQDGQLLA 274 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i-~~~~~~~-------~~~~~~H~~-------------------------~V~~l~fspdg~~lA 274 (298)
-..+.+. +..|.+.+ .+...++ ...-..|.. .....+|+|.-+.+.
T Consensus 168 ~rh~~~l-~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 168 SRHFCVL-GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred cceEEEE-ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 2233332 44556665 4433211 111112221 112356788754433
Q ss_pred EEeCCCCEEEEEECCCCcEEE
Q 022387 275 TSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~tg~~l~ 295 (298)
-.-.... +.|+|++-..++.
T Consensus 247 fi~~pre-llv~dle~~~~l~ 266 (1062)
T KOG1912|consen 247 FITFPRE-LLVFDLEYECCLA 266 (1062)
T ss_pred EEEeccc-eEEEcchhhceeE
Confidence 3345777 8899988666553
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0027 Score=61.74 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=99.6
Q ss_pred CCCCCCeEEEEEcCC-------------CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecC----CCEEE
Q 022387 82 SSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR----CNILA 143 (298)
Q Consensus 82 ~~~~~~V~~v~fs~d-------------g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 143 (298)
..|++.|.-..+.-. |+++|++++|| +.|-.+.+.+......| ...+..+.+.++ .....
T Consensus 55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df--~rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF--KRPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec--CCcceeEEeccchhhhhhhhe
Confidence 455556665555544 99999999988 77888888777666776 567777877665 22233
Q ss_pred EEeCCCCCCCCCCeEEEEeCCC---CcEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCC----
Q 022387 144 LVGGGPDPQYPLNKVMIWDDHQ---SRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP---- 216 (298)
Q Consensus 144 ~~~~~~~~~~~d~~v~iWD~~~---~~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~---- 216 (298)
++| | ..| +.+..-+- ...+.--...++|.++.|..+.++.+.+-.|++||+...+.+..++.....
T Consensus 133 v~G-G-----~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 133 VSG-G-----MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPE 205 (846)
T ss_pred eec-C-----cce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcc
Confidence 333 3 234 66665432 122212234468999999999999999989999999888877776543211
Q ss_pred cceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~ 247 (298)
..-+.+.+.++..+++ |-.| +|+|..++
T Consensus 206 ~fpphl~W~~~~~LVI--GW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVI--GWGD-SVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEE--ecCC-eEEEEEEe
Confidence 2234556665555554 5544 56664444
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.77 E-value=0.027 Score=50.63 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=63.1
Q ss_pred EEEEcCCCCEEEEEc------C-----CeEEEEEcCCCceEEEEeeecCC-ceEE------EEEecCCCEEEEEeCCCCC
Q 022387 90 HISFNQDHGCFAAGT------D-----HGFRIYNCDPFREIFRRDFERGG-GIGV------VEMLFRCNILALVGGGPDP 151 (298)
Q Consensus 90 ~v~fs~dg~~lasgs------~-----~gi~vw~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~ 151 (298)
.+..+|||+.++++. . |-+.+||.++........+. .+ ...+ ..++.++..+.+..-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP-~k~R~~~~~~~~~~~ls~dgk~~~V~N~T--- 115 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP-PKPRAQVVPYKNMFALSADGKFLYVQNFT--- 115 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET-TS-B--BS--GGGEEE-TTSSEEEEEEES---
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC-CcchheecccccceEEccCCcEEEEEccC---
Confidence 467899999888643 1 22569999998776666652 22 2211 1233344444333211
Q ss_pred CCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC-eEEEEECCeEEEEEcC-CCeE
Q 022387 152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVVLEQKIFVYNFA-DLKL 206 (298)
Q Consensus 152 ~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~-~l~v~~~~~I~iwd~~-~~~~ 206 (298)
-...|.|-|+..++.+.++...+-..-.-..++ +..+|.||++.-..+. +++.
T Consensus 116 --Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 116 --PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred --CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 234578888888888888887664433333333 3444556777777774 4444
No 300
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.00015 Score=69.45 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=49.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEE-------------EEeee-cCCceEEEEEecCCCEEEEEeCCC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF-------------RRDFE-RGGGIGVVEMLFRCNILALVGGGP 149 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
.....|++|+....|||+|+.+| ++|..+++...-. ...+. |++.+..+.|.-....+.++.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD--- 90 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD--- 90 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC---
Confidence 34788999999999999999988 5688665432110 01111 566666777654444443333
Q ss_pred CCCCCCCeEEEEeCCCCc
Q 022387 150 DPQYPLNKVMIWDDHQSR 167 (298)
Q Consensus 150 ~~~~~d~~v~iWD~~~~~ 167 (298)
.+|-|.+|=+-+++
T Consensus 91 ----t~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 91 ----TSGLIIVWMLYKGS 104 (1189)
T ss_pred ----CCceEEEEeeeccc
Confidence 46889999876654
No 301
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.77 E-value=0.032 Score=52.34 Aligned_cols=156 Identities=10% Similarity=0.047 Sum_probs=92.7
Q ss_pred ceEEEEEecCCCE-EEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEEC----CeEEEEEc
Q 022387 129 GIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLE----QKIFVYNF 201 (298)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~----~~I~iwd~ 201 (298)
....-.|+++++. +++.+-.. ....|.++|+.+++...-..+...+....|+++ .++...+ ..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 3445567888874 55544321 135799999988876554455555666678775 4544432 47888998
Q ss_pred CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCC
Q 022387 202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (298)
Q Consensus 202 ~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~D 279 (298)
.+++. +.+..+........++ +|+..|++.....|. |.+.+..++....+...... ...|||||++||-.+..
T Consensus 265 ~~g~~-~~LT~~~~~d~~p~~S--PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 265 NTKTL-TQITNYPGIDVNGNFV--EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCCcE-EEcccCCCccCccEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcC
Confidence 76653 3444332222223444 455666654445554 55566666655433322111 24899999999888764
Q ss_pred C--------CEEEEEECCCCcE
Q 022387 280 G--------TLVRIFNTLDGTL 293 (298)
Q Consensus 280 g--------t~IrIWd~~tg~~ 293 (298)
. ..|.+.|+.+|..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe
Confidence 2 2378888887753
No 302
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.0093 Score=55.74 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=32.8
Q ss_pred ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+++..|++||+|+++|--..+|. +.|....-.+++.||
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEe
Confidence 368999999999999999999999 888887666666554
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.72 E-value=0.0083 Score=55.68 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=121.4
Q ss_pred CCeEEEEEcCCC--CEEEEEc------CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeC----CCCCCC
Q 022387 86 PTLLHISFNQDH--GCFAAGT------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGG----GPDPQY 153 (298)
Q Consensus 86 ~~V~~v~fs~dg--~~lasgs------~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (298)
..|+..+|+|.| .-||.=. ...++||.+.....+....+- +-.-..+.|...++.+.+..- +.-.-|
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEEEecCCceEEEEEEEeeeccccee
Confidence 468888888864 3455422 234788988766555555441 222334445555554433221 111122
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEEEe--CCeEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLR--RDRIIVVLE---QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~--~~~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
...++.|.+++...+-.+....++|..++|. .++++++.. -.+.++|++.. +. +.........+.|+++.
T Consensus 253 gesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~-- 327 (561)
T COG5354 253 GESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHE-- 327 (561)
T ss_pred ccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcc--
Confidence 3466888888765554455556789999995 467777653 68999999865 33 33344556677888876
Q ss_pred eEEEEecCC--CceEEEEEcCCcceE--eecccccceeEEEECCCCCEEEEE------eCCCCEEEEEECCCCcE
Q 022387 229 LVLVCPGLQ--KGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATS------STKGTLVRIFNTLDGTL 293 (298)
Q Consensus 229 ~~la~sGs~--dg~v~i~~~~~~~~~--~~~~H~~~V~~l~fspdg~~lAt~------S~Dgt~IrIWd~~tg~~ 293 (298)
.+++++|-. .|.+.+|+...+-.. .+.+ ...+-+.|+|||.++-+. -.|.. |+|||+...+.
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~-i~l~~v~g~~~ 399 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNS-IKLWDVYGAKV 399 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcc-eEEEEecCchh
Confidence 444444544 578888887665332 3332 345667899999988776 23677 99999876543
No 304
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.71 E-value=0.001 Score=59.71 Aligned_cols=153 Identities=12% Similarity=0.093 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCc----eEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
+..+..+++|++||++.. +...+++..... ..-...+ ......+.....+...++.-..| +...+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkag-----D~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAG-----DVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecC-----Cceeeeeec
Confidence 445667888888888876 554466553322 1112222 12222333333344444444444 346678888
Q ss_pred CCCCcEEEEeecCCceEEEEEeCCeEEEEE---CCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
...+.+...+.+-+.++.|.++++.-.+++ +++|++-....--.+.+|-- |..-+..+++-.+ ..|+ ||+.|
T Consensus 139 ~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~---~~Ll-S~sGD 214 (390)
T KOG3914|consen 139 ADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN---YLLL-SGSGD 214 (390)
T ss_pred ccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC---ceee-ecCCC
Confidence 877777777788888999999986544443 36999987766555666543 6666666666543 4455 69999
Q ss_pred ceEEEEEcCCcc
Q 022387 239 GQVRVEHYASKR 250 (298)
Q Consensus 239 g~v~i~~~~~~~ 250 (298)
++|++||+.+.+
T Consensus 215 ~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 215 KTLRLWDITSGK 226 (390)
T ss_pred CcEEEEecccCC
Confidence 999999988643
No 305
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00019 Score=67.88 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=66.3
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeeccccccee-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~-~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
....+-+.|.-.++|. +..+|.|.+..++-.++.++.-|...|+ ++||.|||++||.|=.||+ |+|-|+.+|..++.
T Consensus 22 ~i~~~ewnP~~dLiA~-~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIAT-RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhhe-eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence 3445556666678885 8999999999888778889988888888 9999999999999999999 99999999988876
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.58 E-value=0.033 Score=49.42 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=108.7
Q ss_pred EEEcCCCCEEEEEc-----CCe-EEEEEcC-CCceEEEEeeecCCceE--EEEEecCCCEEEEEeCCCCCCC--------
Q 022387 91 ISFNQDHGCFAAGT-----DHG-FRIYNCD-PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPDPQY-------- 153 (298)
Q Consensus 91 v~fs~dg~~lasgs-----~~g-i~vw~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------- 153 (298)
..||+||++|.+.= ..| |-|||.. ..+++-... .+++. -+.+.+++..|+++.||-...-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~---s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP---SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec---CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 67999999988753 245 4599998 444443333 34443 3445677778888877643210
Q ss_pred ---CCCeEEEEeCCCCcEEEEeecC-----CceEEEEEeCCeEEEEEC----------CeEEEEEcCCCeEEEEEec---
Q 022387 154 ---PLNKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVVLE----------QKIFVYNFADLKLLHQIET--- 212 (298)
Q Consensus 154 ---~d~~v~iWD~~~~~~~~~~~~~-----~~v~~v~~~~~~l~v~~~----------~~I~iwd~~~~~~i~~~~~--- 212 (298)
.+-.+.+-|..+++.+...... -.+.-+++..+..++... --|-+++. ++.+.-+..
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~ 210 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEE 210 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChH
Confidence 1233666778888877765542 257777887776555431 13444443 222333332
Q ss_pred ----cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC
Q 022387 213 ----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 213 ----~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
-.+++++++++.+ +.++++++=..|.+.+||..+..+.... .-..+..|+-.+++ +++|.+ -|.
T Consensus 211 ~~~~l~~Y~gSIa~~~~--g~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRD--GRLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred HHHhhCCceEEEEEeCC--CCEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEeCC-Ccc
Confidence 2245666666654 4778776777788888998887654221 22356777777777 666665 454
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.58 E-value=0.0073 Score=56.80 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
..+.+++||+|+++++.+++...|+.....+.. .+ +......|.. .+.+|+.. ..++|+|+.--+.
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k---~~---G~g~~~vw~~-~n~yAv~~-------~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK---AF---GSGLSFVWSS-RNRYAVLE-------SSSTIKIYKNFKN 99 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEE---EE---EE-SEEEE-T-SSEEEEE--------TTS-EEEEETTEE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCccc---cc---CceeEEEEec-CccEEEEE-------CCCeEEEEEcCcc
Confidence 466899999999999988888888885443331 11 1122234444 45566666 3477998632222
Q ss_pred cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEc
Q 022387 167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246 (298)
Q Consensus 167 ~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~ 246 (298)
.....+.....+..+.. +..+.+..++.|.+||+.+++.++++... .+-.+-+++++.++|.. + +..+.|.+.
T Consensus 100 ~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~-t-~~~i~il~~ 172 (443)
T PF04053_consen 100 EVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALV-T-KDSIYILKY 172 (443)
T ss_dssp -TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE---S-SEEEEEE
T ss_pred ccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEE-e-CCeEEEEEe
Confidence 22223333333333333 66677777788999999999999998843 13455666677888863 3 345666554
Q ss_pred CCc------------ceEeecccccceeEEEECCC
Q 022387 247 ASK------------RTKFIMAHDSRIACFALTQD 269 (298)
Q Consensus 247 ~~~------------~~~~~~~H~~~V~~l~fspd 269 (298)
+.. ....+..-...|.+.+|..|
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 443 33333333566777777665
No 308
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.56 E-value=0.016 Score=57.79 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=88.0
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCc--eEEEEEe-------CCeEEEEE-CCeEEEEEcCCC--eEEEEEeccC--CCcce
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSE--VRSVKLR-------RDRIIVVL-EQKIFVYNFADL--KLLHQIETIA--NPKGL 219 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~--v~~v~~~-------~~~l~v~~-~~~I~iwd~~~~--~~i~~~~~~~--~~~~~ 219 (298)
.++.|.-.|+++|+.+.++..+.. |..+.-. +...+++. ++.+..||.+-. +++.. +.+. .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccCCCc
Confidence 357899999999999999988753 4554432 23444444 589999998642 23321 1111 11122
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.+++...+| .||+ |+.+|.|++++...+..+ .|.+-..+|..|+.+.||++++..+ +.. +-|.+..
T Consensus 581 s~~aTt~~G-~iav-gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~ty-LlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDG-YIAV-GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTY-LLLIDTL 647 (794)
T ss_pred eEEEecCCc-eEEE-EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cce-EEEEEEe
Confidence 344555554 4554 999999999986555544 5677789999999999999888776 555 6677753
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.0023 Score=62.08 Aligned_cols=157 Identities=8% Similarity=0.125 Sum_probs=92.5
Q ss_pred CCCCCeEEEEEcC------CC-----C-EEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEec---CC-CEEEEE
Q 022387 83 SPPPTLLHISFNQ------DH-----G-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF---RC-NILALV 145 (298)
Q Consensus 83 ~~~~~V~~v~fs~------dg-----~-~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~ 145 (298)
.|...|+.|.|.| ++ . +||++...| |.+||............ +...+.-++|.+ .. +.++..
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe
Confidence 3446788888865 11 1 466666655 88999877654333332 355555555533 33 334444
Q ss_pred eCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE-EEEeC---C-----------------------------------
Q 022387 146 GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS-VKLRR---D----------------------------------- 186 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~---~----------------------------------- 186 (298)
. ...++.+|+..+|+..-...+...+.+ +.+.| .
T Consensus 132 h-------~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 132 H-------GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred c-------CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 4 247899999988877665554433322 33322 1
Q ss_pred ----------------------------------------eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC
Q 022387 187 ----------------------------------------RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 187 ----------------------------------------~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
.+++.....+.++|++-..++..+.........+.+-|++
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 2222333445555655555555555444445566777777
Q ss_pred CCeEEEEecCCCceEEEEEcCC
Q 022387 227 GSLVLVCPGLQKGQVRVEHYAS 248 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~ 248 (298)
....|.+ +..||.+.+|..+.
T Consensus 285 ~rd~Lfc-lH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 285 RRDALFC-LHSNGRLTIRVRKE 305 (1062)
T ss_pred CcceEEE-EecCCeEEEEEeec
Confidence 7666765 89999999998764
No 310
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00024 Score=66.23 Aligned_cols=199 Identities=13% Similarity=0.212 Sum_probs=116.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCeEEEEEcCCC-------ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs-~~gi~vw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
.+|...|+.++--.+.+-+++++ ++++++|.+.+. .+.++... |...+..+.+.-+-++++.
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--------- 801 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--------- 801 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee---------
Confidence 46667787776444444455555 588999988543 24444432 5666666666555554444
Q ss_pred CCCeEEEEeCCCCcEEEEeec------CCceEEEEEeCCeEEEE--E-CCeEEEEEcCCCeEEEEEeccC--CCc-ceEE
Q 022387 154 PLNKVMIWDDHQSRCIGELSF------RSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIA--NPK-GLCA 221 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~------~~~v~~v~~~~~~l~v~--~-~~~I~iwd~~~~~~i~~~~~~~--~~~-~~~~ 221 (298)
.|+.|++||.--++.+..+.- .+.|.++.--...++++ + ..+|+++|-+..+-...++... .|. ..-+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 357799999766655443221 12355544322333333 2 4799999999887777776542 232 2224
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEE-EECCCCcE
Q 022387 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRI-FNTLDGTL 293 (298)
Q Consensus 222 ~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrI-Wd~~tg~~ 293 (298)
+...+.|+.+|+ |-.+|.|.+-|..++.+. ..+.-.-..-.++ .|..+.||..-.|.+ +-| |...+|..
T Consensus 882 iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHs-laVnWhaldgim 952 (1034)
T KOG4190|consen 882 IAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHS-LAVNWHALDGIM 952 (1034)
T ss_pred EEeccCcchhhH-HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccce-eEeeehhcCCee
Confidence 444445588885 888999999777766533 3332222222222 255667777777887 667 77666543
No 311
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.55 E-value=0.004 Score=53.46 Aligned_cols=133 Identities=6% Similarity=-0.049 Sum_probs=77.9
Q ss_pred CCCeEEEEeCCCCcEEE-EeecCC----ceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC--cceEEEEeC
Q 022387 154 PLNKVMIWDDHQSRCIG-ELSFRS----EVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP--KGLCAVSQG 225 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~-~~~~~~----~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~--~~~~~~s~~ 225 (298)
..+...+|...+.+... .+..+. -+...+-+...+.++. +.++++.++..... .+..|... ...++++.+
T Consensus 92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~--~~~~h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN--KFAVHNQNLTQNSLHYSND 169 (344)
T ss_pred ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc--cceeeccccceeeeEEcCC
Confidence 45889999988755332 222211 1222233333444444 56777777743222 12223222 445566555
Q ss_pred CCCeEEEEecCCCceEEEEEcCCcce---E-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 226 VGSLVLVCPGLQKGQVRVEHYASKRT---K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i~~~~~~~~---~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+ .++++.|... .|..|.+..... . ....-+..=.+..||.....||+++.||+ +-|||++...
T Consensus 170 ~--~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~~ 236 (344)
T KOG4532|consen 170 P--SWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVRNMA 236 (344)
T ss_pred C--ceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEecccc
Confidence 4 8888656554 455555543322 2 22333445678899999999999999999 9999998743
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.022 Score=56.14 Aligned_cols=196 Identities=16% Similarity=0.189 Sum_probs=111.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCc-eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
.|.| |++.+..+|.|+.+| |.+.+-. .+....... +.++ +..+......+.++.++-++.. ....|+|||++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa-~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQA-YEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehhee-cchhhhhHhhcccCceEEEEEeecCCC--CceEEEEeccc
Confidence 4544 678888999999877 4444322 222122221 2333 3333333344566666543311 23379999976
Q ss_pred C------CcEEE---Eee--c---CCceEEEEEeCCeEEEE---ECCeEEEEEc---CC-CeEEEEEeccCCCcceEEEE
Q 022387 165 Q------SRCIG---ELS--F---RSEVRSVKLRRDRIIVV---LEQKIFVYNF---AD-LKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 165 ~------~~~~~---~~~--~---~~~v~~v~~~~~~l~v~---~~~~I~iwd~---~~-~~~i~~~~~~~~~~~~~~~s 223 (298)
. .+++. .+. + ..++.+++.+.+...++ ++|.|.++.. ++ +....-......++...++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 4 23442 222 2 23567777776543333 2588888854 21 22112222345677777887
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
.++...++| ..-..|.+|.++.+. ..++..|...++|..|++.-..|+.++.. -+.+|+....+.
T Consensus 181 ~d~~s~lFv---~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e--~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 181 SDGKSVLFV---ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE--FLYFYDSDGRGP 247 (933)
T ss_pred cCCceeEEE---EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc--eEEEEcCCCcce
Confidence 777554454 334578888887665 34577888899999999765545555433 388888775443
No 313
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.50 E-value=0.073 Score=48.52 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCC---CCCCCCCeEEEEeCCCCcEEEEeecCCce----
Q 022387 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQSRCIGELSFRSEV---- 178 (298)
Q Consensus 106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~v~iWD~~~~~~~~~~~~~~~v---- 178 (298)
+.+.|.|.++.+.+-.... ...-..+ +++++..++++..-. ...-.+..|.+||..+.+.+.++......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 4577889888877666654 2222333 788888888877400 00003578999999999999998864431
Q ss_pred ----EEEEEeC--CeEEEEE---CCeEEEEEcCCCeEEEEEecc
Q 022387 179 ----RSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIETI 213 (298)
Q Consensus 179 ----~~v~~~~--~~l~v~~---~~~I~iwd~~~~~~i~~~~~~ 213 (298)
..+.+++ +.+++.. ++.|-++|+.+.+.+.++...
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 2455555 4566654 479999999999999988863
No 314
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0053 Score=57.37 Aligned_cols=130 Identities=17% Similarity=0.292 Sum_probs=87.5
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC---------eEEE-EECCeEEEEEcCC--CeEEEEEeccCC--CcceE
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIV-VLEQKIFVYNFAD--LKLLHQIETIAN--PKGLC 220 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~l~v-~~~~~I~iwd~~~--~~~i~~~~~~~~--~~~~~ 220 (298)
...++--|+++|+.+-++.+...|.-+.+.++ ..++ ..++.|.-||.+- ...+..-+.|.. ....-
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred cCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 36688899999999999999887766666553 2333 3457999999852 212222232221 11122
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 221 ~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
++...++| ++|+ |+.+|.|++|+......+ .|.+-..+|..|..+.||++|+..+ +.. +-|-++
T Consensus 435 c~aTT~sG-~Ivv-gS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty-LlLi~t 499 (644)
T KOG2395|consen 435 CFATTESG-YIVV-GSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY-LLLIDT 499 (644)
T ss_pred eeeecCCc-eEEE-eecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE-EEEEEE
Confidence 33444444 5553 999999999998655555 5788889999999999999887776 555 555554
No 315
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.46 E-value=0.063 Score=46.65 Aligned_cols=120 Identities=10% Similarity=0.110 Sum_probs=77.9
Q ss_pred CCeEEEEEcCCCCEEEEEcC-Ce--EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 86 PTLLHISFNQDHGCFAAGTD-HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~-~g--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
.--..+.|..||.++-+.+. +. ++.++.++++......+. .....=-+....+.+...+ |..+...+||
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd 116 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLT------WKEGTGFVYD 116 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEE------SSSSEEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEE------ecCCeEEEEc
Confidence 34567788777876665554 32 789999998876666652 2221111111244555555 3679999999
Q ss_pred CCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEecc
Q 022387 163 DHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI 213 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~ 213 (298)
..+-+.+.++.+...-..++...+.+.+.. +..++++|-.+.+..++++..
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~ 168 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT 168 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred cccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence 999999999999988889987777666654 479999999998888887754
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.42 E-value=0.035 Score=53.80 Aligned_cols=188 Identities=10% Similarity=0.006 Sum_probs=112.4
Q ss_pred EEEcCCCCEEEEEcC-Ce-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387 91 ISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (298)
Q Consensus 91 v~fs~dg~~lasgs~-~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~ 168 (298)
+=+++||+.+..-++ .+ +-+.|.++.+....... .+....+.+.+++..+.+.+-... ..+++..-+......
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~ 272 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDW 272 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCce
Confidence 445678877765555 44 34778887766555554 455556666776666655541110 123344444433322
Q ss_pred EEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCC-----CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE
Q 022387 169 IGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-----LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (298)
Q Consensus 169 ~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~-----~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i 243 (298)
+..+.... +..+.-..+...+ .+++|.+.|..+ .+.+..+.....|. -+.+++| +.++.++|-.+.+|.|
T Consensus 273 ~vvfni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPH-GV~vSPD--GkylyVanklS~tVSV 347 (635)
T PRK02888 273 VVVFNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPH-GVNTSPD--GKYFIANGKLSPTVTV 347 (635)
T ss_pred EEEEchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCcc-ceEECCC--CCEEEEeCCCCCcEEE
Confidence 22222111 0111112233333 467899999987 56777777766654 3455655 5888878999999999
Q ss_pred EEcCCcce-------------EeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 244 EHYASKRT-------------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 244 ~~~~~~~~-------------~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
.|+..... .+..- .-.....+|.++|..+.|-.-|.. |-.||+.+
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsq-v~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQ-IVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecce-eEEEehHH
Confidence 88865321 11111 223456789999999999999998 88999886
No 317
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.00066 Score=62.41 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=101.1
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC--CceEEEEE---eCCeEEEE--ECCeEEE
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR--SEVRSVKL---RRDRIIVV--LEQKIFV 198 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~--~~v~~v~~---~~~~l~v~--~~~~I~i 198 (298)
|.+.+..+.+...+..++..+ +|..|.+||+.++.....+... ..|....| +.+..++. .++.|++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgS-------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGS-------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred CCCccceeeecccCceeeccC-------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 455555555555565555444 6799999999988776555422 23444333 33333332 3588888
Q ss_pred EEcC-CCeE--EEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc----eEeeccccc---ceeEEEECC
Q 022387 199 YNFA-DLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS---RIACFALTQ 268 (298)
Q Consensus 199 wd~~-~~~~--i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~----~~~~~~H~~---~V~~l~fsp 268 (298)
=.+. ++.. .+.+..|..++..+++-++.-..++ +++.|+.+.-.|+.... +..-..+.. ...+|+..|
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~--S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL--SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCccc--ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 7763 3332 2344567788888888777654555 57899999887776543 223334444 578899998
Q ss_pred CC-CEEEEEeCCCCEEEEEECCCC
Q 022387 269 DG-QLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 269 dg-~~lAt~S~Dgt~IrIWd~~tg 291 (298)
-. .+||+|+.|.- +||+|.+.-
T Consensus 292 ~nt~~faVgG~dqf-~RvYD~R~~ 314 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQF-ARVYDQRRI 314 (559)
T ss_pred CCccccccCChhhh-hhhhcccch
Confidence 65 59999999999 999998753
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.36 E-value=0.062 Score=46.28 Aligned_cols=148 Identities=9% Similarity=0.017 Sum_probs=86.9
Q ss_pred CCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecC
Q 022387 97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (298)
Q Consensus 97 g~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~ 175 (298)
.+++..|+..+ +.--|.++++..++..+ +..+..-.+. -++.+++.. ..+.+.+.++.+|..+..+..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GC-------y~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGC-------YSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEE-------ccCcEEEEEecchhheeeeeeh
Confidence 35677888755 44567777777666655 4444433332 345555555 4577999999999877776665
Q ss_pred CceEE---EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce
Q 022387 176 SEVRS---VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (298)
Q Consensus 176 ~~v~~---v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~ 251 (298)
..|.+ ++++...+...+ ++..+..|.++..++.+.+........-++.+.+ +.+.++ ...|.|.--..+..+.
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a--~t~G~vlavt~~~~~~ 169 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAA--ITAGAVLAVTKNPYSS 169 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCC-ceEEEE--eccceEEEEccCCCCc
Confidence 54433 345555555554 5799999999999998877654433344555533 344432 3444444333333333
Q ss_pred Eeeccc
Q 022387 252 KFIMAH 257 (298)
Q Consensus 252 ~~~~~H 257 (298)
.++-.|
T Consensus 170 ~~~w~~ 175 (354)
T KOG4649|consen 170 TEFWAA 175 (354)
T ss_pred ceehhh
Confidence 344333
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.28 E-value=0.046 Score=50.70 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCEEEEEcCC-eEEEEEcCCCceEEEEeeecCCceEEE----------EEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 97 HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVV----------EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 97 g~~lasgs~~-gi~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
+..+.+++.+ .+.-+|.++++.++...+. ...... ......+.+++.+ .++.+.-+|.++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-------~~g~l~ald~~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLS--EKDGWFSKNKSALLSGGVTVAGGKVYIGS-------EKGQVYALNAED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCC--CcccccccccccccccccEEECCEEEEEc-------CCCEEEEEECCC
Confidence 4455555554 4556788888877766641 110000 0011233444433 468899999999
Q ss_pred CcEEEEeecCCceEE-EEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEec
Q 022387 166 SRCIGELSFRSEVRS-VKLRRDRIIVVL-EQKIFVYNFADLKLLHQIET 212 (298)
Q Consensus 166 ~~~~~~~~~~~~v~~-v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~ 212 (298)
|+.+-+.+....+.+ -....+.+++.. ++.|..+|..+++.+.++..
T Consensus 140 G~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 140 GEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence 988777666544332 223345555554 57899999999999888764
No 320
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.28 E-value=0.00079 Score=42.41 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=31.8
Q ss_pred ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
...|.+++|+|...+||.+..||. |.|+++ +++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCcc
Confidence 356999999999999999999999 999999 777653
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.25 E-value=0.052 Score=55.52 Aligned_cols=193 Identities=14% Similarity=0.119 Sum_probs=117.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe--
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD-- 162 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD-- 162 (298)
..|.++.|-.|+.-|..+...| +.+-|.++......-.. ..+|.+++|+++...++++++.. ++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v--d~GI~aaswS~Dee~l~liT~~~-------tll~mT~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV--DNGISAASWSPDEELLALITGRQ-------TLLFMTKD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec--cCceEEEeecCCCcEEEEEeCCc-------EEEEEecc
Confidence 5899999999998777777755 55557777766555554 67899999999999999998643 332221
Q ss_pred --CC-------------------CCcEEEEee----------------------cCCceEEEEEeCC--eEEEE-----E
Q 022387 163 --DH-------------------QSRCIGELS----------------------FRSEVRSVKLRRD--RIIVV-----L 192 (298)
Q Consensus 163 --~~-------------------~~~~~~~~~----------------------~~~~v~~v~~~~~--~l~v~-----~ 192 (298)
.- -|+....|. .+..-.++.|-.+ ++++. .
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 10 011000111 1111233666554 44442 2
Q ss_pred C-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEec--CCCceEEEEEcCCcce----EeecccccceeEEE
Q 022387 193 E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRT----KFIMAHDSRIACFA 265 (298)
Q Consensus 193 ~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG--s~dg~v~i~~~~~~~~----~~~~~H~~~V~~l~ 265 (298)
+ ..|++||-+ +.+-.+ . .......-++++-|.|.++|+.. ..|+.|.++..+.-.- ..+......|..++
T Consensus 220 ~~RkirV~drE-g~Lns~-s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNST-S-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred CceeEEEeccc-chhhcc-c-CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 3 689999976 332111 1 11112234667777778887543 3355677777654321 12333344599999
Q ss_pred ECCCCCEEEE---EeCCCCEEEEEECCCC
Q 022387 266 LTQDGQLLAT---SSTKGTLVRIFNTLDG 291 (298)
Q Consensus 266 fspdg~~lAt---~S~Dgt~IrIWd~~tg 291 (298)
|+.++..||. ...... |++|-+.+-
T Consensus 297 Wns~sdiLAv~~~~~e~~~-v~lwt~~Ny 324 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSL-VQLWTTGNY 324 (1265)
T ss_pred ecCCCCceeeeecccccce-EEEEEecCe
Confidence 9999999999 555554 999987764
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.033 Score=50.48 Aligned_cols=206 Identities=10% Similarity=0.009 Sum_probs=109.5
Q ss_pred ccCCCCCCeEEEEEcCCCC-EEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCe
Q 022387 80 TSSSPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~-~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 157 (298)
+..++...|+.++|||..+ +|..++- ..|+|.|+++......... ...+-.++|.-+..-.+.+|. ..|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl------~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGL------QNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEec------cCce
Confidence 3456667899999999877 6667765 6689999999876655553 355666677666655566552 5688
Q ss_pred EEEEeCCCCcE-EEEeec---CCceEEEE-------EeCCeEEEEECCeEEEEEcC--CCeEEEEEeccCCCcceEEEEe
Q 022387 158 VMIWDDHQSRC-IGELSF---RSEVRSVK-------LRRDRIIVVLEQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQ 224 (298)
Q Consensus 158 v~iWD~~~~~~-~~~~~~---~~~v~~v~-------~~~~~l~v~~~~~I~iwd~~--~~~~i~~~~~~~~~~~~~~~s~ 224 (298)
|.|+|++..+- +.++.. ..+|..++ |....++++..-....|++. .......+.. ..+..++.+..
T Consensus 260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy 338 (463)
T KOG1645|consen 260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQY 338 (463)
T ss_pred EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeee
Confidence 99999986432 112211 12333332 33356666665556677662 1112222221 12333444444
Q ss_pred CCCCeEEEEecCCCc------eE--EEEEcCCcceE-eeccc---------c-cceeEEEECCCCCEEEEEeCCCCEEEE
Q 022387 225 GVGSLVLVCPGLQKG------QV--RVEHYASKRTK-FIMAH---------D-SRIACFALTQDGQLLATSSTKGTLVRI 285 (298)
Q Consensus 225 ~~d~~~la~sGs~dg------~v--~i~~~~~~~~~-~~~~H---------~-~~V~~l~fspdg~~lAt~S~Dgt~IrI 285 (298)
++....+.++-..+. .| ++.+.+.-.+. .-..| + .++.. .++.++++..+.+...+.+
T Consensus 339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~---~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA---VEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec---cccccEEEEecCCcceeEE
Confidence 432222221211110 00 11111111111 11111 1 11222 3455677766666656999
Q ss_pred EECCCCcEEEec
Q 022387 286 FNTLDGTLLQEG 297 (298)
Q Consensus 286 Wd~~tg~~l~~~ 297 (298)
||..+++++++|
T Consensus 416 ~D~~s~evvQ~l 427 (463)
T KOG1645|consen 416 QDPHSFEVVQTL 427 (463)
T ss_pred eccchhheeeec
Confidence 999999998876
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.08 E-value=0.0066 Score=60.05 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=97.2
Q ss_pred EcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCC--CCCCCCeEEEEeCCCCcEE
Q 022387 93 FNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD--PQYPLNKVMIWDDHQSRCI 169 (298)
Q Consensus 93 fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~v~iWD~~~~~~~ 169 (298)
...++++|.+|...| |.+-|..+.+.+..... +.-.+.++.-.+|.++++|-+.. ....|.-|+|||+++.+.+
T Consensus 183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a---Hs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDA---HSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred EEecCcEEEeecccceEEeecCCcCceeeeeec---cccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 345688999998855 66878777776655553 33345556667899998885441 2335777999999998877
Q ss_pred EEeecCCceEEEEEeCC---eEEEEE-CCeEEEEEc---CCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387 170 GELSFRSEVRSVKLRRD---RIIVVL-EQKIFVYNF---ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (298)
Q Consensus 170 ~~~~~~~~v~~v~~~~~---~l~v~~-~~~I~iwd~---~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~ 242 (298)
.-+.++-.-.-+.|+|. .++|+. .|.+.+-|. .+.. ...+..+....++.+|..++.+..+|+ |..+|.|.
T Consensus 260 ~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alaf-gd~~g~v~ 337 (1118)
T KOG1275|consen 260 SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAF-GDHEGHVN 337 (1118)
T ss_pred CCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEE-ecccCcEe
Confidence 66666543333456653 555554 488888883 3221 222333333334555555666689997 99999999
Q ss_pred EEEc
Q 022387 243 VEHY 246 (298)
Q Consensus 243 i~~~ 246 (298)
+|.-
T Consensus 338 ~wa~ 341 (1118)
T KOG1275|consen 338 LWAD 341 (1118)
T ss_pred eecC
Confidence 9983
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0034 Score=60.34 Aligned_cols=110 Identities=14% Similarity=0.227 Sum_probs=73.1
Q ss_pred eEEEEEeCCeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce----E
Q 022387 178 VRSVKLRRDRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----K 252 (298)
Q Consensus 178 v~~v~~~~~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~----~ 252 (298)
.++++-..+.++++.+ |.+.+|+-..++. +.++........+..+-+.+..++| .|+..|.|.|+-++.... .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvA-agt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVA-AGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhh-hhcCCceEEeehhhccCCCccee
Confidence 3555566778888775 8999999765543 3333211222333333333335555 599999999977765321 1
Q ss_pred --ee-cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 253 --FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 253 --~~-~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
.+ +.|...|+|++|++||..|-+|...|+ |..-.+.+
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gk-v~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGK-VVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCce-EEEEEech
Confidence 11 237788999999999999999999998 87766655
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.96 E-value=0.0045 Score=58.44 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=58.9
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeE
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 158 (298)
++-..++.|.|++++|+.+.|+.|..|| +++||.........+. .-....+.|.+++..+++++ ..|.+
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka---~~~P~~iaWHp~gai~~V~s-------~qGel 323 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA---EFIPTLIAWHPDGAIFVVGS-------EQGEL 323 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee---cccceEEEEcCCCcEEEEEc-------CCceE
Confidence 3445677999999999999999999877 7899987764443322 33456788888888887777 56999
Q ss_pred EEEeCCCC
Q 022387 159 MIWDDHQS 166 (298)
Q Consensus 159 ~iWD~~~~ 166 (298)
.+||..-.
T Consensus 324 Q~FD~ALs 331 (545)
T PF11768_consen 324 QCFDMALS 331 (545)
T ss_pred EEEEeecC
Confidence 99997654
No 326
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.046 Score=53.06 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=108.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
...++.|.+++|+.||+.|+..-+||.+|--.-.+..++.+++ .......+.|+.+...+.+.- ..+.+.++
T Consensus 112 nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL-kg~~l~hv~ws~D~~~~Lf~~-------ange~hly 183 (1189)
T KOG2041|consen 112 NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL-KGQLLAHVLWSEDLEQALFKK-------ANGETHLY 183 (1189)
T ss_pred CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-chheccceeecccHHHHHhhh-------cCCcEEEe
Confidence 3445689999999999987765555533222222223333333 122334556666555444333 45778999
Q ss_pred eCCCC-------cEEEEe-----ecCCceEEEEEeC----------CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcc
Q 022387 162 DDHQS-------RCIGEL-----SFRSEVRSVKLRR----------DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKG 218 (298)
Q Consensus 162 D~~~~-------~~~~~~-----~~~~~v~~v~~~~----------~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~ 218 (298)
|-+.. .+.... ++...+-.+.|.. -.+++|-+ |.+.|..-.+......+.+. ..
T Consensus 184 dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~ 260 (1189)
T KOG2041|consen 184 DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MK 260 (1189)
T ss_pred cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cE
Confidence 86542 121111 1223455555532 25666654 66666544322222233332 34
Q ss_pred eEEEEeCCCCeEEEEecCCC--------ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 219 LCAVSQGVGSLVLVCPGLQK--------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~d--------g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.+..-++++|.+||+.|... ..|.++.--..-+.+++-....|+.++|--.|-.+|-+- |+. |.+=+++
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsf-iyfanIR 337 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSF-IYFANIR 337 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cce-EEEEeec
Confidence 45566777778888755431 244444443444557777788899999988888888874 776 6654444
No 327
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.94 E-value=0.074 Score=46.16 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeec------CCceEEEEEecC------CCEEEEEeCCCCCCC
Q 022387 87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFER------GGGIGVVEMLFR------CNILALVGGGPDPQY 153 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 153 (298)
+=+-++||||+.+||.+.. +.|+|||+.... ++...-.+ ...+..+.+... ...+.+..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~------- 116 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN------- 116 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-------
Confidence 4567999999999999877 558899886432 22222110 122232222111 11233333
Q ss_pred CCCeEEEEeCC-----CCcEEEEeec----CCceEEEEEeCC--eEEEEEC---C---------eEEEEEcCCCeEEEEE
Q 022387 154 PLNKVMIWDDH-----QSRCIGELSF----RSEVRSVKLRRD--RIIVVLE---Q---------KIFVYNFADLKLLHQI 210 (298)
Q Consensus 154 ~d~~v~iWD~~-----~~~~~~~~~~----~~~v~~v~~~~~--~l~v~~~---~---------~I~iwd~~~~~~i~~~ 210 (298)
-.|.++=+-+. ..+....+.+ ...|.++.+++. .+++++. + .+..|.+-++.+-...
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 23555544432 2234445554 336888888875 3334321 1 4667766432221110
Q ss_pred --------------------e-----c--cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCc
Q 022387 211 --------------------E-----T--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (298)
Q Consensus 211 --------------------~-----~--~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~ 249 (298)
. . ......+..++-+||+.+||+ -+.+|.|.+|++-.-
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~-ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC-IHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE-EEcCCeEEEEecCcc
Confidence 0 0 112334555566667799985 899999999998653
No 328
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.017 Score=54.26 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=99.1
Q ss_pred ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE--------------CC
Q 022387 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--------------EQ 194 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~--------------~~ 194 (298)
.-..+.|++.+.++++.- ...|.+|--.+-..++.+.|. .|.-+.|+|....+++ .+
T Consensus 212 Tetyv~wSP~GTYL~t~H--------k~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH--------KQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEe--------ccceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCc
Confidence 446788888888887765 355999987765555555443 4666777764322221 15
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcce-EEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc-cccceeEEEECCCCCE
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGL-CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQL 272 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~-~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~-H~~~V~~l~fspdg~~ 272 (298)
.++|||+.++.+.+.|.....+... -.|.++.|..++|. -.-..|.|++...-.+...+. .-..|....|||.+.+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Ar--m~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~l 360 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFAR--MTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNL 360 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEE--eccceEEEEecCceeeecccccCCccccCcccCCCcce
Confidence 8999999999999998874433322 24566667799985 444678887765422211111 2356889999999998
Q ss_pred EEEEeCC-----CCEEEEEECCCCcEEEe
Q 022387 273 LATSSTK-----GTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 273 lAt~S~D-----gt~IrIWd~~tg~~l~~ 296 (298)
||==... -+ +.|-.+.+++.|++
T Consensus 361 lAYwtpe~~~~par-vtL~evPs~~~iRt 388 (698)
T KOG2314|consen 361 LAYWTPETNNIPAR-VTLMEVPSKREIRT 388 (698)
T ss_pred EEEEcccccCCcce-EEEEecCccceeee
Confidence 8854321 23 55555566555543
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.86 E-value=0.14 Score=47.48 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=74.3
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC-CcceEEEEeCCCCeEE
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVL 231 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~-~~~~~~~s~~~d~~~l 231 (298)
.++.+.-.|..+++.+-+..+... ..+....+.+.+.. ++.+..+|..+++.+.+...... ......+. ++.++
T Consensus 264 ~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~ 339 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKREYGSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLV 339 (394)
T ss_pred cCCeEEEEECCCCCEEEeecCCCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEE
Confidence 457888899999887665554321 22344556666655 58999999998887665432111 11122222 23444
Q ss_pred EEecCCCceEEEEEcCCcceE-eeccccccee-EEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 232 VCPGLQKGQVRVEHYASKRTK-FIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~-~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+ ++.+|.+...|..+.++. ..+-....+. ...+ .+..|..++.||. +..++.
T Consensus 340 v--~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~-l~~~~~ 393 (394)
T PRK11138 340 V--GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT-VYAITR 393 (394)
T ss_pred E--EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce-EEEEeC
Confidence 4 788999998887766543 3332222222 2222 2346777788998 777654
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.02 Score=56.01 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC
Q 022387 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
....+++.+ ..|.|.+.+..-.. ...+.+... ...+..+++|. ||+|.|-.+.+.+..+++.- ..+
T Consensus 48 ~~~~~~~Gt-------H~g~v~~~~~~~~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rp 114 (846)
T KOG2066|consen 48 HDKFFALGT-------HRGAVYLTTCQGNP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRP 114 (846)
T ss_pred hcceeeecc-------ccceEEEEecCCcc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEec-CCc
Confidence 344556655 55777777765432 222222222 33456677766 47788888776666655543 345
Q ss_pred cceEEEEeCC---CCeEEEEecCCCceEEEEEcC---CcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 217 KGLCAVSQGV---GSLVLVCPGLQKGQVRVEHYA---SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 217 ~~~~~~s~~~---d~~~la~sGs~dg~v~i~~~~---~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
..+++++|+. ....++ +|+..| +.++..+ .+....+..-.++|.+|.| .|.++|=++++| |||+|+.+
T Consensus 115 iksial~Pd~~~~~sk~fv-~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G--v~vyd~~~ 188 (846)
T KOG2066|consen 115 IKSIALHPDFSRQQSKQFV-SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG--VKVYDTPT 188 (846)
T ss_pred ceeEEeccchhhhhhhhee-ecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC--cEEEeccc
Confidence 6677777761 123343 488888 6664432 2222256666789999999 578999999776 69999999
Q ss_pred CcEEE
Q 022387 291 GTLLQ 295 (298)
Q Consensus 291 g~~l~ 295 (298)
++.+.
T Consensus 189 ~~~l~ 193 (846)
T KOG2066|consen 189 RQRLT 193 (846)
T ss_pred cceee
Confidence 98764
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.85 E-value=0.37 Score=46.19 Aligned_cols=139 Identities=16% Similarity=0.249 Sum_probs=80.2
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCc------eE-EEEEeCCeEEEEE----------CCeEEEEEcCCCeEEEEEeccCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSE------VR-SVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~------v~-~v~~~~~~l~v~~----------~~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
.++.|.-+|.++++.+-+++.... +. +..+..+.+++.. ++.+..+|..+++.+.+++.....
T Consensus 118 ~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 118 FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 468899999999998877665443 11 1233445555543 367889999999998887753211
Q ss_pred c---------------------ceEEEEeCCCCeEEEEecCCCc------------------eEEEEEcCCcceE-eec-
Q 022387 217 K---------------------GLCAVSQGVGSLVLVCPGLQKG------------------QVRVEHYASKRTK-FIM- 255 (298)
Q Consensus 217 ~---------------------~~~~~s~~~d~~~la~sGs~dg------------------~v~i~~~~~~~~~-~~~- 255 (298)
. ...++... .+.+++ |+.++ .|.-.|.++.+.. .+.
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~-~g~V~v--g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPK-TNLVYV--GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCC-CCEEEE--ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 0 01122211 223443 45444 4555666655433 322
Q ss_pred -ccc--------cc-eeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 256 -AHD--------SR-IACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 256 -~H~--------~~-V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.|. .+ +..+. .-+|. .++.++.+|. +...|.++|+.+.++
T Consensus 275 ~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~ 327 (488)
T cd00216 275 TPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISAR 327 (488)
T ss_pred CCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCce-EEEEECCCCcEeeEe
Confidence 221 11 11111 12343 6777888999 999999999998764
No 332
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.79 E-value=0.29 Score=42.05 Aligned_cols=187 Identities=15% Similarity=0.089 Sum_probs=102.6
Q ss_pred eEEEEEc-CCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cC-Cce--EEEEEecCCCEEEEEeCCCCCC-CCCCeEEEE
Q 022387 88 LLHISFN-QDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RG-GGI--GVVEMLFRCNILALVGGGPDPQ-YPLNKVMIW 161 (298)
Q Consensus 88 V~~v~fs-~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~iW 161 (298)
...+++. ++|.++++ ..+++.++|..+.+........ .. ... .-+.+..+++..+...+..... ...+.|..+
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 6677888 67665555 4566677788887654333321 01 223 3445566676555544322100 011567778
Q ss_pred eCCCCcEEEEeecCCceEEEEEeCCe--EEEEE--CCeEEEEEcCC-Ce-E--EEEEeccCCCc-ceEEEEeCCCCeEEE
Q 022387 162 DDHQSRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFAD-LK-L--LHQIETIANPK-GLCAVSQGVGSLVLV 232 (298)
Q Consensus 162 D~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~-~~-~--i~~~~~~~~~~-~~~~~s~~~d~~~la 232 (298)
+.. ++.......-.....++|+++. +.++. .+.|..|++.. .. . .+.+....... ..--+..+.++.+.+
T Consensus 121 ~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 121 DPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp ETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred CCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 877 5544434333456778888753 55554 37899998842 22 1 22232211111 122344566667666
Q ss_pred EecCCCceEEEEEcCCcceEeecccccceeEEEEC-CCC-CEEEEEe
Q 022387 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDG-QLLATSS 277 (298)
Q Consensus 233 ~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fs-pdg-~~lAt~S 277 (298)
+ ....+.|.+++-+.+.+..+.--...+++++|. ++. .+++|.+
T Consensus 200 a-~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 200 A-DWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp E-EETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred E-EcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 3 567788888888866555555445589999995 664 5666543
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.72 E-value=0.42 Score=42.96 Aligned_cols=174 Identities=14% Similarity=0.229 Sum_probs=95.8
Q ss_pred CCEEEEEcC---------C-e-EEEEEcCCC-----ceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 97 HGCFAAGTD---------H-G-FRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 97 g~~lasgs~---------~-g-i~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
-.+|++|.. . | +.++++... +.....+....+.+..++.. .+. ++++. .++|.+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~--------g~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV--------GNKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE--------TTEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee--------cCEEEE
Confidence 468888763 1 6 668888773 32222221135666665544 444 44443 278999
Q ss_pred EeCCCCc-EEEEeec--CCceEEEEEeCCeEEEEEC-CeEEEEEcC-CCeEEEEEeccCCCcceEEEEe--CCCCeEEEE
Q 022387 161 WDDHQSR-CIGELSF--RSEVRSVKLRRDRIIVVLE-QKIFVYNFA-DLKLLHQIETIANPKGLCAVSQ--GVGSLVLVC 233 (298)
Q Consensus 161 WD~~~~~-~~~~~~~--~~~v~~v~~~~~~l~v~~~-~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s~--~~d~~~la~ 233 (298)
|++...+ ......+ ...+.++....+.++++.- +.|.++... ..+.+..+.....+..+.++.+ +.+ .+++
T Consensus 112 ~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~- 189 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV- 189 (321)
T ss_dssp EEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE-
T ss_pred EEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE-
Confidence 9998877 5544333 3467788888887777753 667766543 2333444444444544444433 443 4444
Q ss_pred ecCCCceEEEEEcCC--------c-ceE-eeccc-ccceeEE---EECC--CCC------EEEEEeCCCCEEE
Q 022387 234 PGLQKGQVRVEHYAS--------K-RTK-FIMAH-DSRIACF---ALTQ--DGQ------LLATSSTKGTLVR 284 (298)
Q Consensus 234 sGs~dg~v~i~~~~~--------~-~~~-~~~~H-~~~V~~l---~fsp--dg~------~lAt~S~Dgt~Ir 284 (298)
++.+|.+.+..... . .+. ...-| ...|+++ ++.| .+. .++-++.+|. |-
T Consensus 190 -~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~-Ig 260 (321)
T PF03178_consen 190 -GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS-IG 260 (321)
T ss_dssp -EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred -EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE-EE
Confidence 79999999955542 1 222 22233 3457777 6556 222 3777778998 65
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.039 Score=50.77 Aligned_cols=206 Identities=12% Similarity=0.103 Sum_probs=121.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC--CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCC---EEEEEeCCCCCCCCCC
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTD--HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLN 156 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~--~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~ 156 (298)
+.|-..|.+++.+.||.++.++.+ +.++++|++.....-...+ ..--+.++|..... .++.++ .+.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs-----~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLPGFAEWVTSKGDKISLIAVS-----LFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCCCceEEecCCCCeeeeEEee-----cccCC
Confidence 556668889999999999999776 4588998876554333332 12223344433322 222333 23568
Q ss_pred eEEEEeCCCCc-EE-EEee-cCCceEEEEEeCCeEEE-E--ECCeEEEEEcCC-CeEEE-----EEecc-------CCCc
Q 022387 157 KVMIWDDHQSR-CI-GELS-FRSEVRSVKLRRDRIIV-V--LEQKIFVYNFAD-LKLLH-----QIETI-------ANPK 217 (298)
Q Consensus 157 ~v~iWD~~~~~-~~-~~~~-~~~~v~~v~~~~~~l~v-~--~~~~I~iwd~~~-~~~i~-----~~~~~-------~~~~ 217 (298)
.+.++|-.... .. ..-. +.++|.++..++-.-.+ . ..|.|..|.... .+..+ .++.. ....
T Consensus 123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt 202 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT 202 (558)
T ss_pred CcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccccc
Confidence 89999976543 22 2222 34688888877643222 2 348999998762 22111 11111 0111
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce---------------------------------Eeeccccc-ceeE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------------------------------KFIMAHDS-RIAC 263 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~---------------------------------~~~~~H~~-~V~~ 263 (298)
...++..++++..++. -..|-+|++.+++++.+ +.+..|.. .-+.
T Consensus 203 ~pts~Efsp~g~qist-l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 203 EPTSFEFSPDGAQIST-LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred CccceEEccccCcccc-cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 1223444444566764 45888899866553211 01223433 3467
Q ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 264 l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
++|...|++|.=|..=| |||.++.++++.+.+
T Consensus 282 ~~fdes~~flly~t~~g--ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG--IKVINLDTNTVVRIL 313 (558)
T ss_pred eEEcCCCCEEEeeccee--EEEEEeecCeEEEEe
Confidence 88999999999887654 899999999998764
No 335
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.66 E-value=0.023 Score=49.91 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=90.4
Q ss_pred ccCCCCCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEe-ee-cC-----CceEEEEEecC-CCEEEEEeCCCCC
Q 022387 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD-FE-RG-----GGIGVVEMLFR-CNILALVGGGPDP 151 (298)
Q Consensus 80 ~~~~~~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~-~~-~~-----~~~~~~~~~~~-~~~~~~~~~~~~~ 151 (298)
....|+-.|.+++|+.|...+.++.+=.|-+|+++-....+... .. |+ .-+....+++. .+.+..++
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs----- 241 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS----- 241 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-----
Confidence 34667778999999999999998877778899887543322221 10 00 01233334433 33444444
Q ss_pred CCCCCeEEEEeCCCCc------EEEEe-------ec----CCceEEEEEeCCeEEEEE-C-CeEEEEEcC-CCeEEEEEe
Q 022387 152 QYPLNKVMIWDDHQSR------CIGEL-------SF----RSEVRSVKLRRDRIIVVL-E-QKIFVYNFA-DLKLLHQIE 211 (298)
Q Consensus 152 ~~~d~~v~iWD~~~~~------~~~~~-------~~----~~~v~~v~~~~~~l~v~~-~-~~I~iwd~~-~~~~i~~~~ 211 (298)
..|+|++-|++... .+.+. .+ -+.|..+.|+++.-.++. + .+|+|||.+ ..+++.++.
T Consensus 242 --SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 242 --SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred --CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec
Confidence 46899999987421 11111 11 124566778877644444 4 699999995 456777775
Q ss_pred ccCCC-------------cceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387 212 TIANP-------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (298)
Q Consensus 212 ~~~~~-------------~~~~~~s~~~d~~~la~sGs~dg~v~i~~ 245 (298)
-|..- ..-..+++++|...+. +|+.....-|+-
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~-sgsy~NNfgiyp 365 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL-SGSYSNNFGIYP 365 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCccccc-ccccccceeeec
Confidence 44321 1122445555544444 466655544443
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.64 E-value=0.079 Score=51.40 Aligned_cols=173 Identities=13% Similarity=0.040 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCEEEEEc---CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 88 LLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs---~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
...+++++||+++.+.+ +.+.-+-.++.........+. -. .+..+..++....+ + +++|.+.|..
T Consensus 237 pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~--~iea~vkdGK~~~V-~--------gn~V~VID~~ 304 (635)
T PRK02888 237 LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA--RIEEAVKAGKFKTI-G--------GSKVPVVDGR 304 (635)
T ss_pred cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH--HHHHhhhCCCEEEE-C--------CCEEEEEECC
Confidence 35678888999887765 444333333222211111110 00 01122234443333 2 3789999999
Q ss_pred C-----CcEEEEeecCCceEEEEEeCCe--EEEEE--CCeEEEEEcCCCeE------------EEEEeccCCCcceEEEE
Q 022387 165 Q-----SRCIGELSFRSEVRSVKLRRDR--IIVVL--EQKIFVYNFADLKL------------LHQIETIANPKGLCAVS 223 (298)
Q Consensus 165 ~-----~~~~~~~~~~~~v~~v~~~~~~--l~v~~--~~~I~iwd~~~~~~------------i~~~~~~~~~~~~~~~s 223 (298)
+ ...+..+........+.++++. ++++. +++|.|+|+.+.+. +.+......| ....
T Consensus 305 t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTa 381 (635)
T PRK02888 305 KAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTA 381 (635)
T ss_pred ccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEE
Confidence 8 4677777777788888998864 44443 47999999977552 3333332222 2334
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCC----------cceE-eecccccc-----eeEEEECCCCCEEEEE
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYAS----------KRTK-FIMAHDSR-----IACFALTQDGQLLATS 276 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~----------~~~~-~~~~H~~~-----V~~l~fspdg~~lAt~ 276 (298)
+++++..+. +-..|..|..|++.. .++. .+.-|-.+ ...=.-.|||++|++.
T Consensus 382 FDg~G~ayt-slf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 382 FDGRGNAYT-TLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSL 449 (635)
T ss_pred ECCCCCEEE-eEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEc
Confidence 466665544 467788888899764 1222 23333332 2222346899999987
No 337
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.46 E-value=0.19 Score=37.63 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=58.5
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEEEe-CCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
.|..||+|+-. +.+.++.....|.++.-. ...++.+. +|+|-+|+- .+.+..++....+.....+..++|+..-
T Consensus 23 ~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~e 98 (111)
T PF14783_consen 23 DDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPE 98 (111)
T ss_pred CCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceE
Confidence 68999999864 677888888888887754 34455444 589999975 4455666665555555566666665433
Q ss_pred EEecCCCceEEE
Q 022387 232 VCPGLQKGQVRV 243 (298)
Q Consensus 232 a~sGs~dg~v~i 243 (298)
.+.|-.+|.|.+
T Consensus 99 LI~GwsnGkve~ 110 (111)
T PF14783_consen 99 LIVGWSNGKVEV 110 (111)
T ss_pred EEEEecCCeEEe
Confidence 334888988754
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.41 E-value=0.57 Score=40.85 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCCeEEEEEc-CCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEE---
Q 022387 95 QDHGCFAAGTDHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--- 170 (298)
Q Consensus 95 ~dg~~lasgs~~gi~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~--- 170 (298)
..++.|+.|.++|+.+++. ...+...... ...+..+.+..+-+.+++.+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEEc--------CCccEEEEchhhccccccc
Confidence 4578999999999888888 3333322222 34577777777777777766 4789999976532222
Q ss_pred ------------EeecCCceEEEE----E-eCCeEEEEECCeEEEEEcCC----C-eEEEEEeccCCCcceEEEEeCCCC
Q 022387 171 ------------ELSFRSEVRSVK----L-RRDRIIVVLEQKIFVYNFAD----L-KLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 171 ------------~~~~~~~v~~v~----~-~~~~l~v~~~~~I~iwd~~~----~-~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
.+.....+...+ . ....++++...+|.+|.... . +..+++..... ...+++. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~-~~~i~~~--~-- 148 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP-PSSIAFL--G-- 148 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC-cEEEEEe--C--
Confidence 111122333333 1 12356667778999988854 2 45566655433 3334444 2
Q ss_pred eEEEEecCCCceEEEEEcCCc
Q 022387 229 LVLVCPGLQKGQVRVEHYASK 249 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~ 249 (298)
..+++ |..++.. +.|+.+.
T Consensus 149 ~~i~v-~~~~~f~-~idl~~~ 167 (275)
T PF00780_consen 149 NKICV-GTSKGFY-LIDLNTG 167 (275)
T ss_pred CEEEE-EeCCceE-EEecCCC
Confidence 34443 5555544 4444433
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.03 Score=53.45 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeecCCceE-EEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIG-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
..|.-+.|+|.-.+||.+..+| +.+.... .++++...+ ++..++ .++|.+++..+|++= .||+|++-|+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~-------kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGF-------KDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEe-------cCCeEEEEEc
Confidence 4788999999999999999988 6666655 555555554 455666 888999988887754 7899999999
Q ss_pred CCCcEEEE--eecCCceEEEEEeCCeEEE
Q 022387 164 HQSRCIGE--LSFRSEVRSVKLRRDRIIV 190 (298)
Q Consensus 164 ~~~~~~~~--~~~~~~v~~v~~~~~~l~v 190 (298)
+++..+.. +.....|.++.|.+..+.+
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~~~v~~ 120 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDRIEVRV 120 (665)
T ss_pred cCCCceeccccccccchheeecccceeec
Confidence 99988877 4445578888887554443
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.32 E-value=0.073 Score=49.92 Aligned_cols=133 Identities=10% Similarity=0.095 Sum_probs=80.1
Q ss_pred eEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 157 ~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.+.++|+.+++....+++......-.|++ ..++.+.. + .|.++|+...+. ..+.........-.++ +||..
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~s--pdG~~ 295 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWS--PDGSK 295 (425)
T ss_pred eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCC--CCCCE
Confidence 48888988877665555555444455666 45555543 2 788888876663 3344333333333444 45577
Q ss_pred EEEecCCCceEEE--EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCE--EEEEECCCCc
Q 022387 231 LVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL--VRIFNTLDGT 292 (298)
Q Consensus 231 la~sGs~dg~v~i--~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~--IrIWd~~tg~ 292 (298)
+++..+..|.-.| .+.+.+....+.-....=..-.|||||++||-.+..+.. |-+.|+.++.
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 7776777786666 445555444444333333377899999999999854322 4555555443
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.0062 Score=61.24 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=50.6
Q ss_pred eEEEEecCCCceEEEEEcCCc--ceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 229 LVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~--~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..+|+ |+..|.+...|++.. +...=..-.++|++++|+.||++++.|=.+|. |.+||+..++.++.+
T Consensus 100 ~~ivi-~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 100 VPIVI-GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVI 168 (1206)
T ss_pred eeEEE-EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeee
Confidence 55665 888888888555443 21111223468999999999999999999998 999999999887654
No 342
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.19 E-value=0.01 Score=33.45 Aligned_cols=30 Identities=17% Similarity=0.488 Sum_probs=25.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEE
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYN 112 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~ 112 (298)
.|...|.++.|++++.++++|+.++ +++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566899999999999999998866 77885
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.17 E-value=1.1 Score=41.67 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=97.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEeeec-------CCceEEEEEe---c--CC--CEEEEEe
Q 022387 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-------GGGIGVVEML---F--RC--NILALVG 146 (298)
Q Consensus 82 ~~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~~~~-------~~~~~~~~~~---~--~~--~~~~~~~ 146 (298)
+...++|++++.|--| ++|.|.++| +.|.|+.-...++...+.+ ...+..+++. . ++ ..+.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4557899999998444 999999866 7799997777777655421 1122333332 1 11 1233333
Q ss_pred CCCCCCCCCCeEEEEeCC--C-CcEEE----Ee-ecCCceEEEE-EeCC-----------------------eEEEEECC
Q 022387 147 GGPDPQYPLNKVMIWDDH--Q-SRCIG----EL-SFRSEVRSVK-LRRD-----------------------RIIVVLEQ 194 (298)
Q Consensus 147 ~~~~~~~~d~~v~iWD~~--~-~~~~~----~~-~~~~~v~~v~-~~~~-----------------------~l~v~~~~ 194 (298)
. ..|.+.+|.+. . +.... .. ...++|..+. ++.+ .++++++.
T Consensus 162 T------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 162 T------NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp E------TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred e------CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 2 45888888654 1 21111 11 2334555543 3211 55666788
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcce--EEEEe---CCCCeEEEEecCCCceEEEEEcCC-cceEeecc----cccceeEE
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGL--CAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMA----HDSRIACF 264 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~--~~~s~---~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~~----H~~~V~~l 264 (298)
.||++...+.+..++.. ..+..+ +.+-. ...+..|++ =..+|.|+++.+-. +.+..++. +...+...
T Consensus 236 ~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~-l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVC-LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp EEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEE-EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred ceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEE-EECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 99999998877766544 222222 22211 112234443 47899999999854 44444333 33457788
Q ss_pred EECCCCCEEEEEeCCCCEEEEEEC
Q 022387 265 ALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 265 ~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+|+++|..|.-.|.. . +.+|.+
T Consensus 313 sis~~Gdi~~~~gps-E-~~l~sv 334 (395)
T PF08596_consen 313 SISRNGDIFYWTGPS-E-IQLFSV 334 (395)
T ss_dssp EE-TTS-EEEE-SSS-E-EEEEEE
T ss_pred EECCCCCEEEEeCcc-c-EEEEEE
Confidence 899999988777643 3 555543
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.14 E-value=0.32 Score=45.89 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=76.2
Q ss_pred CCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC----------
Q 022387 97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---------- 166 (298)
Q Consensus 97 g~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~---------- 166 (298)
|.+|+..+++.+.+||+++.+.+.+... ..+..+.|+.+++.+++++ +.++.|++....
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t--------~~~i~il~~~~~~~~~~~~~g~ 185 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVT--------KDSIYILKYNLEAVAAIPEEGV 185 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE---------S-SEEEEEE-HHHHHHBTTTB-
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEe--------CCeEEEEEecchhcccccccCc
Confidence 8899888888899999999988766653 4478889999999999987 356888875544
Q ss_pred --cEEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEE
Q 022387 167 --RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (298)
Q Consensus 167 --~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~ 244 (298)
.....-+....|.+..|..+-++-.+.++|+.+- +++. .++..-..+...+.+.+.. +.+++ ...++.|..+
T Consensus 186 e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~~lkYl~--~Ge~-~~i~~ld~~~yllgy~~~~-~~ly~--~Dr~~~v~~~ 259 (443)
T PF04053_consen 186 EDAFELIHEISERIKSGCWVEDCFIYTTSNHLKYLV--NGET-GIIAHLDKPLYLLGYLPKE-NRLYL--IDRDGNVISY 259 (443)
T ss_dssp GGGEEEEEEE-S--SEEEEETTEEEEE-TTEEEEEE--TTEE-EEEEE-SS--EEEEEETTT-TEEEE--E-TT--EEEE
T ss_pred hhceEEEEEecceeEEEEEEcCEEEEEcCCeEEEEE--cCCc-ceEEEcCCceEEEEEEccC-CEEEE--EECCCCEEEE
Confidence 2221222256899999999865556667777733 3332 2344445567777776643 24444 3777777776
Q ss_pred EcC
Q 022387 245 HYA 247 (298)
Q Consensus 245 ~~~ 247 (298)
.+.
T Consensus 260 ~ld 262 (443)
T PF04053_consen 260 ELD 262 (443)
T ss_dssp E--
T ss_pred EEC
Confidence 654
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.03 E-value=0.38 Score=36.07 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=54.5
Q ss_pred CeEEEEEC-CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEE
Q 022387 186 DRIIVVLE-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACF 264 (298)
Q Consensus 186 ~~l~v~~~-~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l 264 (298)
+.|+++++ ..||+|+- .+.+.++.........+.+. . ..+++ |..+|+|-+|+...+ +...+.-.. ++++
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~---~-~~F~Y-~l~NGTVGvY~~~~R-lWRiKSK~~-~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLG---G-GRFAY-ALANGTVGVYDRSQR-LWRIKSKNQ-VTSM 86 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcC---C-CEEEE-EecCCEEEEEeCcce-eeeeccCCC-eEEE
Confidence 46666664 69999974 46677777654443333332 2 45665 899999999987443 333332222 5555
Q ss_pred EEC---CCC-CEEEEEeCCCCEE
Q 022387 265 ALT---QDG-QLLATSSTKGTLV 283 (298)
Q Consensus 265 ~fs---pdg-~~lAt~S~Dgt~I 283 (298)
++. -|| +-|++|-.+|. |
T Consensus 87 ~~~D~~gdG~~eLI~GwsnGk-v 108 (111)
T PF14783_consen 87 AFYDINGDGVPELIVGWSNGK-V 108 (111)
T ss_pred EEEcCCCCCceEEEEEecCCe-E
Confidence 443 334 57888888887 6
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.01 E-value=0.38 Score=45.14 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCEEEEEc---CC--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 86 PTLLHISFNQDHGCFAAGT---DH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs---~~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
..+..-+|+|+++.++--. .+ .+.++++++.+......+ .+....-.+++++..++++...+ ..-.|.+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~ 266 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDGSKLAFSSSRD----GSPDIYL 266 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCCCEEEEEECCC----CCccEEE
Confidence 4677778999998655332 23 256778888776555554 45556667888999999988654 2344777
Q ss_pred EeCCCCcEEEEeecCC-ceEEEEEeC--CeEEEEEC--C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEE
Q 022387 161 WDDHQSRCIGELSFRS-EVRSVKLRR--DRIIVVLE--Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (298)
Q Consensus 161 WD~~~~~~~~~~~~~~-~v~~v~~~~--~~l~v~~~--~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~ 233 (298)
.|+..++..+ +.... .-..=.|++ +.++..++ + .|.+++...... ..+.........-. +++|+.++++
T Consensus 267 ~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~--~SpdG~~i~~ 342 (425)
T COG0823 267 MDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPV--WSPDGDKIVF 342 (425)
T ss_pred EcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCcc--CCCCCCEEEE
Confidence 7888777433 33322 112223444 34555554 2 788888766554 33322211111223 3455577776
Q ss_pred ecCCCce--EEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387 234 PGLQKGQ--VRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS 276 (298)
Q Consensus 234 sGs~dg~--v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~ 276 (298)
.+..+|. |.+.+...........+......-.|.++|+.|.-.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 5655666 333554443322222233334444556666554443
No 347
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.00 E-value=0.028 Score=34.44 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.1
Q ss_pred cceeEEEECCC-C--CEEEEEeCCCCEEEEEECCCCcE
Q 022387 259 SRIACFALTQD-G--QLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 259 ~~V~~l~fspd-g--~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
++|++|.|||+ + .+||-+-.-|. |.|+|++++-.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEcccCcc
Confidence 47999999985 4 58888877777 99999996533
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.87 E-value=0.0027 Score=60.48 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=102.5
Q ss_pred CCCeEEEEEcCCCC--EEEEEcCCe-EEEEEcCCC---ceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCe
Q 022387 85 PPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPF---REIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNK 157 (298)
Q Consensus 85 ~~~V~~v~fs~dg~--~lasgs~~g-i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 157 (298)
...+.|++++-+.+ .+|+|..+| |.+-..... ..+++-. +.......+|.. +.+.+|.+- +..-.|-.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~--~ar~Ct~lAwneLDtn~LAagl---dkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG--YARPCTSLAWNELDTNHLAAGL---DKHRNDSS 130 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc--ccccccccccccccHHHHHhhh---hhhcccCC
Confidence 34788888876554 688888877 445433211 1111111 112222233321 233333321 11124677
Q ss_pred EEEEeCCCC--cEEEEeecC----CceEEEEEeCCeEEEE---ECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCC
Q 022387 158 VMIWDDHQS--RCIGELSFR----SEVRSVKLRRDRIIVV---LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 158 v~iWD~~~~--~~~~~~~~~----~~v~~v~~~~~~l~v~---~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
++|||..++ .......+. ....++++..+.-++. ....++++|++. ......+.+ ..+.-+.+.+- .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG~tVdp~-~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQGITVDPF-S 207 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhcccceecCC-C
Confidence 999999876 222222222 2334556655433332 246899999973 222222222 11223344441 2
Q ss_pred CeEEEEecCCCceEEEEEcCC--cceEeeccccc-----ceeEEEECCCC-CEEEEEeCCCCEEEEEECC
Q 022387 228 SLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDS-----RIACFALTQDG-QLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~--~~~~~~~~H~~-----~V~~l~fspdg-~~lAt~S~Dgt~IrIWd~~ 289 (298)
..+++ ...||.|.+||... +.......|.. .+..++|+|.. -+||+.+.|...||++|+.
T Consensus 208 ~nY~c--s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFC--SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcee--ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 36777 47799999999422 22111122322 39999999863 5778887777669999976
No 349
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.85 E-value=0.024 Score=35.64 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEc
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNC 113 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~ 113 (298)
.+.|.+++|+|..++||.|+++| +.||.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 35799999999999999999977 668877
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=1.5 Score=40.49 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCEEEE-Ec-CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCC
Q 022387 88 LLHISFNQDHGCFAA-GT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (298)
Q Consensus 88 V~~v~fs~dg~~las-gs-~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~ 165 (298)
-..+++++++..+.. .. .+.+.+.|..+......... ......+.+.+....+.++..+. .++++.+.|..+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAAT 149 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCC
Confidence 457889999985443 33 36788999777766555543 33445666677777776666431 258899999999
Q ss_pred CcEEEEeecCCceEEEEEeCC--eEEEEE--CCeEEEEEcCCCeEEE-E----EeccCCCcceEEEEeCCCCeEEEEecC
Q 022387 166 SRCIGELSFRSEVRSVKLRRD--RIIVVL--EQKIFVYNFADLKLLH-Q----IETIANPKGLCAVSQGVGSLVLVCPGL 236 (298)
Q Consensus 166 ~~~~~~~~~~~~v~~v~~~~~--~l~v~~--~~~I~iwd~~~~~~i~-~----~~~~~~~~~~~~~s~~~d~~~la~sGs 236 (298)
+..+.+..-...-..+.+.++ .+.++. ++.|.+.|.......+ + +..+.. -..+.+.+++...+++.-++
T Consensus 150 ~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 150 NKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred CeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccC
Confidence 888877444332366777664 455555 5899999987666553 1 222222 23456666665455554344
Q ss_pred CCceEEEEEcCCcceEeec-cccc-ceeEEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEe
Q 022387 237 QKGQVRVEHYASKRTKFIM-AHDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~~~-~H~~-~V~~l~fspdg~~lAt~S~D-gt~IrIWd~~tg~~l~~ 296 (298)
.++.+..-+.....+.... .-.. ....++++|+|+.+-..... ++ +.+-|..+.++...
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~ 290 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKT 290 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeee
Confidence 4467777777766554321 1111 56778999999988888444 66 99999888777654
No 351
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.83 E-value=0.78 Score=47.38 Aligned_cols=149 Identities=11% Similarity=0.125 Sum_probs=86.0
Q ss_pred ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe--EEEEEC-CeEEEEEcCCCe
Q 022387 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVVLE-QKIFVYNFADLK 205 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~--l~v~~~-~~I~iwd~~~~~ 205 (298)
.+..+.+.-+.+.+.++. .+|.|.+-|.++.....-=.....|.+.+|+++. +++++. +++.+ ...+..
T Consensus 70 ~i~s~~fl~d~~~i~v~~-------~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~ 141 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT-------ALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLF-MTKDFE 141 (1265)
T ss_pred ceEEEEEecccceEEEEe-------cCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEE-Eecccc
Confidence 444555555677777766 4577888888876543322334578888888763 444444 33333 222211
Q ss_pred EEE------------------------EEeccCC-------------------CcceEEEEeCCCCeEEEEec----CCC
Q 022387 206 LLH------------------------QIETIAN-------------------PKGLCAVSQGVGSLVLVCPG----LQK 238 (298)
Q Consensus 206 ~i~------------------------~~~~~~~-------------------~~~~~~~s~~~d~~~la~sG----s~d 238 (298)
++. .|.+... ...-+.+++-+||.++|+++ ...
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 111 1111000 01123588999999999753 222
Q ss_pred ceEEEEEcCCcceEe-ecccccceeEEEECCCCCEEEEE---eCCCCEEEEEE
Q 022387 239 GQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATS---STKGTLVRIFN 287 (298)
Q Consensus 239 g~v~i~~~~~~~~~~-~~~H~~~V~~l~fspdg~~lAt~---S~Dgt~IrIWd 287 (298)
..|+||+.+. .+.. -..-.+-=.+++|-|.|.++|+- ..|+. |.+|.
T Consensus 222 RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE 272 (1265)
T KOG1920|consen 222 RKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE 272 (1265)
T ss_pred eeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe
Confidence 7999999872 2221 11122234588999999999997 34566 88886
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.82 E-value=0.025 Score=55.86 Aligned_cols=90 Identities=17% Similarity=0.269 Sum_probs=70.9
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEe-ecccccceeEEEECCCCCE
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL 272 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~-~~~H~~~V~~l~fspdg~~ 272 (298)
|+|-||- .++++.+.. ..|+...+++++|...+|| .|-.-|.+.+|....+...+ ..-|..+|.-+.||++|..
T Consensus 41 GSVtIfa-dtGEPqr~V---t~P~hatSLCWHpe~~vLa-~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~ 115 (1416)
T KOG3617|consen 41 GSVTIFA-DTGEPQRDV---TYPVHATSLCWHPEEFVLA-QGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTV 115 (1416)
T ss_pred ceEEEEe-cCCCCCccc---ccceehhhhccChHHHHHh-hccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCe
Confidence 7888874 445543222 2355566788888767777 59999999999998877764 4569999999999999999
Q ss_pred EEEEeCCCCEEEEEECC
Q 022387 273 LATSSTKGTLVRIFNTL 289 (298)
Q Consensus 273 lAt~S~Dgt~IrIWd~~ 289 (298)
|.|+..-|. |.+|.+.
T Consensus 116 l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 116 LMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred EEEcCCCce-eEEEEee
Confidence 999999998 9999976
No 353
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.82 E-value=1.3 Score=39.76 Aligned_cols=134 Identities=7% Similarity=-0.019 Sum_probs=75.9
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEE-EEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC---CCcceEEEEeCCCCeE
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRS-VKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGVGSLV 230 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~-v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~---~~~~~~~~s~~~d~~~ 230 (298)
.+.|.-||..+++.. .+.....+.+ ...+....+++.+..+.+++..++..+..+.... .....-....++++.+
T Consensus 46 ~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~ 124 (307)
T COG3386 46 GGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI 124 (307)
T ss_pred CCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence 367788887765432 3444444444 3456777888888888888886555433332211 1122223344555566
Q ss_pred EEEecC-----C-----CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 231 LVCPGL-----Q-----KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 231 la~sGs-----~-----dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.+.+-. . -|.|+..+-.......+..|-..-+.||||||++.|-.+-.....|.-|++.
T Consensus 125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 553222 1 1323333322334445666677889999999998777775543337777665
No 354
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.49 E-value=1.5 Score=38.15 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=91.1
Q ss_pred CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEE--EEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEecc
Q 022387 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETI 213 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~--v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~ 213 (298)
+...+.-++|-. ....|+.+|+.+++...........+. ++...+.+...+ ++...+||..+.+.+.++.-.
T Consensus 54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP 129 (264)
T ss_dssp ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S
T ss_pred CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC
Confidence 344555555432 345799999999999888887776554 667788888877 589999999999999888643
Q ss_pred CCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-cceEeec--ccc---cceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM--AHD---SRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 214 ~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-~~~~~~~--~H~---~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
. .-.-++.++ ..|..| .....+.++|-.+ +....+. ... ..++-|.|- +|...|=.=.... |-.-|
T Consensus 130 ~---EGWGLt~dg--~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~-I~~Id 201 (264)
T PF05096_consen 130 G---EGWGLTSDG--KRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR-IVRID 201 (264)
T ss_dssp S---S--EEEECS--SCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE-EEEEE
T ss_pred C---cceEEEcCC--CEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe-EEEEe
Confidence 2 222233444 333322 3334666666432 3332222 222 246667775 7888888876666 77889
Q ss_pred CCCCcEEEec
Q 022387 288 TLDGTLLQEG 297 (298)
Q Consensus 288 ~~tg~~l~~~ 297 (298)
..+|+++..+
T Consensus 202 p~tG~V~~~i 211 (264)
T PF05096_consen 202 PETGKVVGWI 211 (264)
T ss_dssp TTT-BEEEEE
T ss_pred CCCCeEEEEE
Confidence 9999987654
No 355
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.05 Score=49.35 Aligned_cols=92 Identities=11% Similarity=0.031 Sum_probs=67.5
Q ss_pred EEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCC-CEE
Q 022387 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDG-QLL 273 (298)
Q Consensus 196 I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg-~~l 273 (298)
+++.+-.+++...-+..+...+..++|++...|.+. .++-+.+|.|.|+.+.... .+.+| ..+++++|.-|. .++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~--~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLG--LASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceee--eeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 666766666666555555556667788777644333 3799999999998877654 56667 899999999765 666
Q ss_pred EEEeCCCCEEEEEECCCC
Q 022387 274 ATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 274 At~S~Dgt~IrIWd~~tg 291 (298)
-.|-..|. |.|||++.-
T Consensus 252 YaGl~nG~-VlvyD~R~~ 268 (463)
T KOG1645|consen 252 YAGLQNGM-VLVYDMRQP 268 (463)
T ss_pred EEeccCce-EEEEEccCC
Confidence 66667777 999999854
No 356
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.47 E-value=0.26 Score=42.51 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE-e-ecCCceEEEEE
Q 022387 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-L-SFRSEVRSVKL 183 (298)
Q Consensus 106 ~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~-~-~~~~~v~~v~~ 183 (298)
+..+.|+.++.+.+..... ....+..++..+....++.+++ .||.+.+||.++...... + .+..++..+-|
T Consensus 159 d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt------~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGT------DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred cceeeeccccccccccccc-ccccchhhhCCcccccEEEEec------CCCeEEEEEcccccchHHHHHHhhhhhhheec
Confidence 4456788877665433332 1334555555555555555543 468999999988743222 2 23457888889
Q ss_pred eC---CeEEEEE-CCeEEEEEcCC
Q 022387 184 RR---DRIIVVL-EQKIFVYNFAD 203 (298)
Q Consensus 184 ~~---~~l~v~~-~~~I~iwd~~~ 203 (298)
|+ ..++++. +|.+..||-.+
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCCC
Confidence 86 4677665 58999999654
No 357
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.88 Score=38.14 Aligned_cols=173 Identities=10% Similarity=0.088 Sum_probs=93.1
Q ss_pred CCCEEEEEcC-C--eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe
Q 022387 96 DHGCFAAGTD-H--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (298)
Q Consensus 96 dg~~lasgs~-~--gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~ 172 (298)
||.++.+.+. + .|++|++.+++.++...+. ...+..--...-++.+.... |.++...++|..+-+++.++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LT------w~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLT------WKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEE------eccceeEEEChHHhhhhccc
Confidence 4555555554 3 2889999999988877762 01111000111234444444 35688899999999999999
Q ss_pred ecCCceEEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCC--CcceE-EEEeCCCCeEEE---------EecCCCc
Q 022387 173 SFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIAN--PKGLC-AVSQGVGSLVLV---------CPGLQKG 239 (298)
Q Consensus 173 ~~~~~v~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~--~~~~~-~~s~~~d~~~la---------~sGs~dg 239 (298)
.+.+.-..++-..+.+.... ...+.+-|-.+...+.+++...+ |+.-+ -+-+- ||.+.| ---=..|
T Consensus 128 ~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 128 SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence 99988888887766644432 24566666655554444433211 11100 00000 111111 0012233
Q ss_pred eEEE-EEcCCc--ceEeecccccceeEEEECCCC-CEEEEE
Q 022387 240 QVRV-EHYASK--RTKFIMAHDSRIACFALTQDG-QLLATS 276 (298)
Q Consensus 240 ~v~i-~~~~~~--~~~~~~~H~~~V~~l~fspdg-~~lAt~ 276 (298)
.|.- .|+..- ....-..|....+.||+.|++ ++++||
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3333 333321 112334566789999999987 777776
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.10 E-value=1.9 Score=39.38 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=87.9
Q ss_pred cCCCCEEEEEc----------CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 94 NQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 94 s~dg~~lasgs----------~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
|||+++++... ...+-|||+.+.+..-... .........++++++.++.+. ++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~~~~~v~--------~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--PPPKLQDAKWSPDGKYIAFVR--------DNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SSSTEEEEEE--------TTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--CccccccceeecCCCeeEEEe--------cCceEEEEC
Confidence 68899887733 2335578888865422211 135677888999999999987 477999998
Q ss_pred CCCcEEEEeecCC-------------------ceEEEEEeCC--eEEEEE--CCeEEEEEc---CCCeEEEEEeccCCCc
Q 022387 164 HQSRCIGELSFRS-------------------EVRSVKLRRD--RIIVVL--EQKIFVYNF---ADLKLLHQIETIANPK 217 (298)
Q Consensus 164 ~~~~~~~~~~~~~-------------------~v~~v~~~~~--~l~v~~--~~~I~iwd~---~~~~~i~~~~~~~~~~ 217 (298)
.+++.. .+...+ .-.++.|+++ .++... +..|+.+.+ ..... ..-
T Consensus 71 ~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------~yp 141 (353)
T PF00930_consen 71 ATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------QYP 141 (353)
T ss_dssp TTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--------SS-
T ss_pred CCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--------cCC
Confidence 777443 232211 1234556654 333221 223333322 11100 000
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEee------cccccceeEEEECCCCCEEEEE--eCCCC--EEEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKFI------MAHDSRIACFALTQDGQLLATS--STKGT--LVRI 285 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~~------~~H~~~V~~l~fspdg~~lAt~--S~Dgt--~IrI 285 (298)
....+.. ..+|..+-.+.+ +++.+++...+ ..-...+..+.|+++++.|+.. +.+.+ .+.+
T Consensus 142 ~~~~~~Y-------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 142 EVESIRY-------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp EEEEEE---------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred ccccccc-------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence 1111111 113666666666 66665544222 2234579999999999834333 33332 2566
Q ss_pred EECCCCcE
Q 022387 286 FNTLDGTL 293 (298)
Q Consensus 286 Wd~~tg~~ 293 (298)
.|..+|++
T Consensus 215 ~d~~tg~~ 222 (353)
T PF00930_consen 215 CDASTGET 222 (353)
T ss_dssp EEECTTTC
T ss_pred EECCCCce
Confidence 67776654
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=0.029 Score=47.23 Aligned_cols=134 Identities=13% Similarity=0.168 Sum_probs=74.5
Q ss_pred CCCeEEEEeCCCCcEE-EEeecCCceEEEEEeCCeEEEE-ECCeEEEEEcCCCeEE-EEEeccCCCcceEEEEeCCCCeE
Q 022387 154 PLNKVMIWDDHQSRCI-GELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~-~~~~~~~~v~~v~~~~~~l~v~-~~~~I~iwd~~~~~~i-~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.++.|+-++++..+.. +.-.+...-..+.--...++++ .++.|.+|+....... ..+.....++.++ | +..+...
T Consensus 38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-I-p~~~~~~ 115 (238)
T KOG2444|consen 38 ADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-I-PNGRDSS 115 (238)
T ss_pred CCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec-c-ccccccc
Confidence 4677777777654321 1112222222222223344444 4688888887522111 1111222222222 2 2222233
Q ss_pred EEEecCCCceEEEEEcCCcceE-eecccc-cceeEEEECCCCCEEEEE--eCCCCEEEEEECCC
Q 022387 231 LVCPGLQKGQVRVEHYASKRTK-FIMAHD-SRIACFALTQDGQLLATS--STKGTLVRIFNTLD 290 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~~~~~~-~~~~H~-~~V~~l~fspdg~~lAt~--S~Dgt~IrIWd~~t 290 (298)
+++.|..+|.|+-|..+..+.. ..-.|+ .++.....+..+++++.+ |.|.. ++.|++..
T Consensus 116 ~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-~k~W~ve~ 178 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-LKKWNVEK 178 (238)
T ss_pred eeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh-hhhcchhh
Confidence 5556899999999998876544 445566 567777777777888888 88887 88888764
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.01 E-value=3.6 Score=41.92 Aligned_cols=195 Identities=15% Similarity=0.236 Sum_probs=113.0
Q ss_pred EEEcCCC--CEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCC-CCCC------CCCCeEEEE
Q 022387 91 ISFNQDH--GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQ------YPLNKVMIW 161 (298)
Q Consensus 91 v~fs~dg--~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~d~~v~iW 161 (298)
+.|+.+. ..||.+..+++++.-++..+.+..+...-.....-++.......+++.+.- +... ..-..++++
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4455443 578888888889988887766655554212222333333223333333211 1000 001237888
Q ss_pred eCCCCcEEEEeecCC-----ceEEEEEeCC---eEEEEE-----------CCeEEEEEcCCCeEEEEEeccCCCcceEEE
Q 022387 162 DDHQSRCIGELSFRS-----EVRSVKLRRD---RIIVVL-----------EQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (298)
Q Consensus 162 D~~~~~~~~~~~~~~-----~v~~v~~~~~---~l~v~~-----------~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~ 222 (298)
|-++-+.+...++.. .+.++.|..+ .+++++ .|.|.+|.....+.++....+.-...+.++
T Consensus 756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL 835 (1096)
T KOG1897|consen 756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL 835 (1096)
T ss_pred cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence 888877666555432 3444456544 455554 268899888663333333322222223333
Q ss_pred EeCCCCeEEEEecCCCceEEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 223 SQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
.- .++.++| +-+..|++++++.++ +..-..|..++..+...-.|..+|.|..=+. |.+-.++.
T Consensus 836 ~~-fngkllA---~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~ 899 (1096)
T KOG1897|consen 836 VE-FNGKLLA---GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKG 899 (1096)
T ss_pred hh-hCCeEEE---ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEec
Confidence 22 2347776 567799999998874 4455568888999999999999999977666 66655443
No 361
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=0.025 Score=56.14 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=66.5
Q ss_pred CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCC-
Q 022387 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGT- 281 (298)
Q Consensus 204 ~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt- 281 (298)
.+..++|..+.....+++|+.+. ..|++ |+..|.|+|++..++... ...+|.++|+-|.=|.||.++.|.|.-..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~--~hL~v-G~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT--NHLAV-GSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCC--ceEEe-eeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 34445566555556667776654 67775 999999999999887654 78899999999999999987777754332
Q ss_pred EEEEEECCC-CcEEEec
Q 022387 282 LVRIFNTLD-GTLLQEG 297 (298)
Q Consensus 282 ~IrIWd~~t-g~~l~~~ 297 (298)
+.-+|++.+ +...|+|
T Consensus 1168 lsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF 1184 (1516)
T ss_pred hHHHhccccccCccccc
Confidence 467999875 4445554
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.44 E-value=4.3 Score=37.94 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=71.9
Q ss_pred cCCCCEEEEEc-------CCeEEEEEcCCCceEEEEeeecCCceEE--EEEecCCCEEEEEeCCCCC----CC-------
Q 022387 94 NQDHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVGGGPDP----QY------- 153 (298)
Q Consensus 94 s~dg~~lasgs-------~~gi~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~------- 153 (298)
-|+|..++++. ..|+.+.|-++.+....++......... .-+.+..+.++++..+.-. .+
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 46888877653 1347788888877766665311111111 2234556666665543210 00
Q ss_pred --CCCeEEEEeCCCCcEEEEeecCC---ceEEEEEeCC------eEEEEECCeEEEE-EcCCC----eEEEEEeccC---
Q 022387 154 --PLNKVMIWDDHQSRCIGELSFRS---EVRSVKLRRD------RIIVVLEQKIFVY-NFADL----KLLHQIETIA--- 214 (298)
Q Consensus 154 --~d~~v~iWD~~~~~~~~~~~~~~---~v~~v~~~~~------~l~v~~~~~I~iw-d~~~~----~~i~~~~~~~--- 214 (298)
--+++.+||+.+.+.++++.... ..+.|.|..+ +.-++...+|..| .-.++ +.+.++....
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 12679999999999999998863 4566766432 2333344455444 32332 2222332110
Q ss_pred C------------CcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387 215 N------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (298)
Q Consensus 215 ~------------~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~ 248 (298)
. |..+..|.-+.|..+|-++.--.|.|+-||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0 223456555556688877889999999999874
No 363
>PHA02713 hypothetical protein; Provisional
Probab=94.42 E-value=5.4 Score=38.97 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=35.7
Q ss_pred eEEEEecCCC------ceEEEEEcCC-cc---eEeecccccceeEEEECCCCCEEEEEeCCC--CEEEEEECCCCc
Q 022387 229 LVLVCPGLQK------GQVRVEHYAS-KR---TKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGT 292 (298)
Q Consensus 229 ~~la~sGs~d------g~v~i~~~~~-~~---~~~~~~H~~~V~~l~fspdg~~lAt~S~Dg--t~IrIWd~~tg~ 292 (298)
.+.++ |+.+ ..+..||-.+ +. +..+.........+++ +|++.+.||.|| + +-.||..+.+
T Consensus 465 ~IYv~-GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~-~e~yd~~~~~ 536 (557)
T PHA02713 465 DIYVV-CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML-QDTFNVYTYE 536 (557)
T ss_pred EEEEE-eCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee-hhhcCccccc
Confidence 66665 4433 1345577665 33 1233333333444444 789999999998 6 7888877653
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.83 E-value=5.6 Score=36.97 Aligned_cols=202 Identities=12% Similarity=0.096 Sum_probs=101.1
Q ss_pred CeEEEEEcCCCCEEEEEcC-Ce-----EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC----CCCC
Q 022387 87 TLLHISFNQDHGCFAAGTD-HG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----YPLN 156 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~-~g-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~ 156 (298)
.+...++||||++||.+-+ +| ++|+|+++++.+.. .+. ......+.|..++..++...-..... -...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-ccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 3446889999999986632 22 67899999865432 221 11122378888877777665443110 0156
Q ss_pred eEEEEeCCCCcEE--EEeec--CCc-eEEEEEeCC--eEEEEE----C-CeEEEEEcCCC----eEEEEEeccCCCcceE
Q 022387 157 KVMIWDDHQSRCI--GELSF--RSE-VRSVKLRRD--RIIVVL----E-QKIFVYNFADL----KLLHQIETIANPKGLC 220 (298)
Q Consensus 157 ~v~iWD~~~~~~~--~~~~~--~~~-v~~v~~~~~--~l~v~~----~-~~I~iwd~~~~----~~i~~~~~~~~~~~~~ 220 (298)
.|+.|.+.+...- .-+.. ... ...+..+.+ .+++.. + ..+.+.++.+. ...+.+........ .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE-Y 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E-E
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE-E
Confidence 7999998876432 22222 222 445666553 444432 2 46888888764 23333333222221 1
Q ss_pred EEEeCCCCeEEEEec--CCCceEEEEEcCCcc----eEeecccccc--eeEEEECCCCCEEEEEeCCC-CEEEEEECCCC
Q 022387 221 AVSQGVGSLVLVCPG--LQKGQVRVEHYASKR----TKFIMAHDSR--IACFALTQDGQLLATSSTKG-TLVRIFNTLDG 291 (298)
Q Consensus 221 ~~s~~~d~~~la~sG--s~dg~v~i~~~~~~~----~~~~~~H~~~--V~~l~fspdg~~lAt~S~Dg-t~IrIWd~~tg 291 (298)
.+...++ .+++.+. ..++.|.-.++.... ...+..|... +..+.... +.+++..-.++ ..|+|+++..+
T Consensus 282 ~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 282 YVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCC
Confidence 2222232 3444332 334566556665433 2256666664 55554432 23444544444 23788888833
Q ss_pred cE
Q 022387 292 TL 293 (298)
Q Consensus 292 ~~ 293 (298)
..
T Consensus 360 ~~ 361 (414)
T PF02897_consen 360 KE 361 (414)
T ss_dssp EE
T ss_pred cE
Confidence 33
No 365
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.81 E-value=0.14 Score=50.74 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=78.1
Q ss_pred ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCeEEEEEC---CeEEEEEcCCCe
Q 022387 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---QKIFVYNFADLK 205 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~l~v~~~---~~I~iwd~~~~~ 205 (298)
...+..|.+...++++++=+.. .-|.|.|+- .+|+..+.+.++-.+.+++||+..++.+.. +.+.+|...+.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~e---r~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPE---RGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccCCCCceeEEEEecCC---CCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3455567777777777653221 336788874 456666677777788889999987766643 789999987665
Q ss_pred EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcC
Q 022387 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (298)
Q Consensus 206 ~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~ 247 (298)
.-....+|..++..+.+++++ ..+. ++..-|.|.+|...
T Consensus 93 ~htv~~th~a~i~~l~wS~~G--~~l~-t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDG--TVLM-TLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeccCCCCCceeEEecCCC--CeEE-EcCCCceeEEEEee
Confidence 433344577777777777665 6666 58999999998765
No 366
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.70 E-value=6 Score=36.86 Aligned_cols=199 Identities=12% Similarity=0.159 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEE-------------------------EEeee---------------
Q 022387 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF-------------------------RRDFE--------------- 125 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~-------------------------~~~~~--------------- 125 (298)
.|+.++|.++..-||+|...| +.||.+...+..- -...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999988899998866 7777543211100 00000
Q ss_pred --cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC---------ceEEEEEe-----CC---
Q 022387 126 --RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS---------EVRSVKLR-----RD--- 186 (298)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~---------~v~~v~~~-----~~--- 186 (298)
..+.+..++.+ +-..+|++- .+|.+.|.|++....+..-.... .+.++.|. .+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy-------~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGY-------ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEE-------TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEecC-CCcEEEEEe-------cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 12333444432 333444544 67999999998777766533222 46666663 22
Q ss_pred --eEEEEEC-CeEEEEEcC--C-CeE----EEEEeccCCCcc-eEEEEeCC-------------------CCeEEEEecC
Q 022387 187 --RIIVVLE-QKIFVYNFA--D-LKL----LHQIETIANPKG-LCAVSQGV-------------------GSLVLVCPGL 236 (298)
Q Consensus 187 --~l~v~~~-~~I~iwd~~--~-~~~----i~~~~~~~~~~~-~~~~s~~~-------------------d~~~la~sGs 236 (298)
.++++++ |.+.+|.+. . +.- ......+..++. ++.|..+. ...++++ .
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv--v 232 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV--V 232 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE--E
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE--E
Confidence 4555565 888888773 1 111 111112222222 23343221 0123332 2
Q ss_pred CCceEEEEEcCCcc-eE-eecccccceeEEEE-----CCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 237 QKGQVRVEHYASKR-TK-FIMAHDSRIACFAL-----TQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 237 ~dg~v~i~~~~~~~-~~-~~~~H~~~V~~l~f-----spdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+..+++...-..+ .. .+ ...-....+++ ...+..|++--.||. |+++.+..-+.+.++
T Consensus 233 Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSLPSLKEIKSV 298 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEETTT--EEEEE
T ss_pred cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc-EEEEECCCchHhhcc
Confidence 34566775554332 22 33 22223334444 246788999999999 999999998887654
No 367
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.69 E-value=2.3 Score=40.34 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=82.0
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC---------eEEEE-ECCeEEEEEcC-CCeEEEEEeccCCCcceEEEE
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD---------RIIVV-LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~---------~l~v~-~~~~I~iwd~~-~~~~i~~~~~~~~~~~~~~~s 223 (298)
...+.--|++.|+.+-++..+..| -+.+++. ..+++ .+..|.-.|-+ .+..+..... .....-..|+
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~Fs 566 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKFS 566 (776)
T ss_pred cccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhcccccccc
Confidence 466788899999999999888777 5556553 33333 45566666663 2222222111 1111111222
Q ss_pred eC--CCCeEEEEecCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 224 QG--VGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 224 ~~--~d~~~la~sGs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.. -...++|+ |+..|-|+++|.-....+ .+.+-..+|-.|..+.+|+++...+ ... +-+-|++
T Consensus 567 s~~tTesGyIa~-as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~y-llL~d~~ 632 (776)
T COG5167 567 SGMTTESGYIAA-ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNY-LLLTDVP 632 (776)
T ss_pred ccccccCceEEE-ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cce-EEEEecc
Confidence 11 12367775 899999999887665554 5677888999999999998776665 344 6677754
No 368
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.57 E-value=7.6 Score=37.66 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=79.3
Q ss_pred CCCeEEEEeCCCCcEEEEeecCC-----ceEE-EEEeCCeEEEEE-------CCeEEEEEcCCCeEEEEEeccCCCc---
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVVL-------EQKIFVYNFADLKLLHQIETIANPK--- 217 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~-----~v~~-v~~~~~~l~v~~-------~~~I~iwd~~~~~~i~~~~~~~~~~--- 217 (298)
.++.|.-.|.++++.+-+..... .+.+ -....+.+++.. ++.|..+|.++++.+.++.......
T Consensus 128 ~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 128 LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred CCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 46889999999998876654321 1111 112345555543 4689999999999988776532110
Q ss_pred ------------------------c---eEEEEeCCCCeEEEE-ecC---CCc-----------eEEEEEcCCcceE-ee
Q 022387 218 ------------------------G---LCAVSQGVGSLVLVC-PGL---QKG-----------QVRVEHYASKRTK-FI 254 (298)
Q Consensus 218 ------------------------~---~~~~s~~~d~~~la~-sGs---~dg-----------~v~i~~~~~~~~~-~~ 254 (298)
+ =...+.|++..++.+ +|. .++ .|.--|.++.+++ .+
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 012244443333322 222 112 2222455555543 33
Q ss_pred c--ccc-------cceeEEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEE
Q 022387 255 M--AHD-------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 255 ~--~H~-------~~V~~l~fspdg~---~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
+ .|+ ....-+.+-.+|+ .++.+..+|. +.+.|-++|+.+.
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i~ 339 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLLS 339 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCceec
Confidence 2 232 1222233335776 8889999998 9999999999873
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.33 E-value=4.6 Score=39.55 Aligned_cols=130 Identities=16% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCeEEEEeCCCCcEEEE--eecCCceEEEEEeCCeEEEEEC--------CeEEEEEcCCC--eEEEEEeccCCCcceEEE
Q 022387 155 LNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADL--KLLHQIETIANPKGLCAV 222 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~--~~~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~~--~~i~~~~~~~~~~~~~~~ 222 (298)
-++|-.||..+.+.... ......-.+++.....+.+++. +++..||..+. +.+..+.......++..+
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 36688999887654322 1111222334444555555432 47889998543 333333333333333332
Q ss_pred EeCCCCeEEEEecCCCc-----eEEEEEcCCcceEe---ecccccceeEEEECCCCCEEEEEeCCCC----EEEEEECCC
Q 022387 223 SQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLD 290 (298)
Q Consensus 223 s~~~d~~~la~sGs~dg-----~v~i~~~~~~~~~~---~~~H~~~V~~l~fspdg~~lAt~S~Dgt----~IrIWd~~t 290 (298)
++.+.++ |+.|| .|..+|..+++-.. +....+.+..+.. ++++.|.|+.||. .|..||..+
T Consensus 475 ----~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 475 ----NGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ----CCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 2367776 77666 25557776655332 2223333333333 6789999999983 266666555
Q ss_pred C
Q 022387 291 G 291 (298)
Q Consensus 291 g 291 (298)
.
T Consensus 548 d 548 (571)
T KOG4441|consen 548 D 548 (571)
T ss_pred C
Confidence 4
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.20 E-value=8.1 Score=37.00 Aligned_cols=138 Identities=11% Similarity=0.144 Sum_probs=78.2
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCc-------e--EEEEEeC-CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCC------
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSE-------V--RSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIETIANP------ 216 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~-------v--~~v~~~~-~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~------ 216 (298)
.++.|.-.|..+++.+-+++.... + ..+.... +.+++.. ++.|..+|..+++.+.++......
T Consensus 69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i 148 (488)
T cd00216 69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTM 148 (488)
T ss_pred CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEe
Confidence 357788888888877655543221 1 1123333 5666554 589999999999999887754321
Q ss_pred cceEEEEeCCCCeEEEEecC---------CCceEEEEEcCCcceE-eeccc-c-------------------cce-eEEE
Q 022387 217 KGLCAVSQGVGSLVLVCPGL---------QKGQVRVEHYASKRTK-FIMAH-D-------------------SRI-ACFA 265 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs---------~dg~v~i~~~~~~~~~-~~~~H-~-------------------~~V-~~l~ 265 (298)
.....+.. +.+++ |+ .+|.+.-.|..+.+.. .+... . ..| ...+
T Consensus 149 ~ssP~v~~---~~v~v--g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa 223 (488)
T cd00216 149 TGAPTIVK---KLVII--GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPT 223 (488)
T ss_pred cCCCEEEC---CEEEE--eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCee
Confidence 11122221 23333 33 2466666666554432 32211 0 011 2345
Q ss_pred ECCCCCEEEEEeCCC------------------CEEEEEECCCCcEEEec
Q 022387 266 LTQDGQLLATSSTKG------------------TLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 266 fspdg~~lAt~S~Dg------------------t~IrIWd~~tg~~l~~~ 297 (298)
+.+.+.++..++.|+ . |.-+|.++|+++.+|
T Consensus 224 ~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~-l~Ald~~tG~~~W~~ 272 (488)
T cd00216 224 YDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS-IVALDADTGKVKWFY 272 (488)
T ss_pred EeCCCCEEEEECCCCCCCccCCccCCCCCCceee-EEEEcCCCCCEEEEe
Confidence 555555566665454 6 888999999998765
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.46 Score=48.41 Aligned_cols=106 Identities=25% Similarity=0.315 Sum_probs=64.1
Q ss_pred ceEEEEEeCCeEEEEEC-CeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eEe
Q 022387 177 EVRSVKLRRDRIIVVLE-QKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF 253 (298)
Q Consensus 177 ~v~~v~~~~~~l~v~~~-~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~~ 253 (298)
.+.+.+.-...++++++ +.|...|.+. ..+.+.=.....++.+++|+.++ .+++ .|-.+|.|.+||...++ ++.
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg--~~l~-~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG--SLLL-AGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC--ceec-cccCCCcEEEEEccCCcceee
Confidence 34444555556677776 6777777754 22222222233456666666654 7777 49999999999998754 455
Q ss_pred ecccccceeEEEE---CCCCCEEEEEeCCCCEEEEEEC
Q 022387 254 IMAHDSRIACFAL---TQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 254 ~~~H~~~V~~l~f---spdg~~lAt~S~Dgt~IrIWd~ 288 (298)
+..|..+++.+-+ ..++..+.|+..-|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs---f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS---FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCcEEEEccCCCc---eEEE
Confidence 6666555444433 344556667654444 7764
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.76 E-value=8.5 Score=36.00 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEEEEEcC
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCD 114 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~vw~~~ 114 (298)
+.|.++.|+.+.++++.-.++.+++||+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 58999999998887777767778899875
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.72 E-value=6.3 Score=34.34 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=61.1
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEE-EeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEE
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVK-LRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~-~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~l 231 (298)
..+.++--|.++|..+-+.....++-+-+ .-.+++++.. .+.+.+.+..++.++..+..... +.+-+ -.+.++.++
T Consensus 31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-vk~~a-~~d~~~glI 108 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-VKVRA-QCDFDGGLI 108 (354)
T ss_pred CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh-hccce-EEcCCCceE
Confidence 45778888999988877655554443322 2345555543 68999999999988888776433 22222 224455666
Q ss_pred EEecCCCceEEEEEcCCc
Q 022387 232 VCPGLQKGQVRVEHYASK 249 (298)
Q Consensus 232 a~sGs~dg~v~i~~~~~~ 249 (298)
-+ |+.|+....-|.+..
T Consensus 109 yc-gshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 109 YC-GSHDGNFYALDPKTY 125 (354)
T ss_pred EE-ecCCCcEEEeccccc
Confidence 65 999999998776654
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.67 E-value=1.8 Score=43.73 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=78.2
Q ss_pred CCCCEEEEE-cC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCC------CEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 95 QDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------NILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 95 ~dg~~lasg-s~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
.|.++|.-. .+ +.+.-.|++.++.+-.+.+ ...+.+..+.++. +...++| .+++.+..||.+-.
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~--~~~~~v~~~~p~~K~aqlt~e~tflG------ls~n~lfriDpR~~ 562 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKV--HDDIPVVDIAPDSKFAQLTNEQTFLG------LSDNSLFRIDPRLS 562 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeec--CCCcceeEecccccccccCCCceEEE------ECCCceEEeccCCC
Confidence 344554443 23 4455667788888878876 3334355554431 1122223 25688999998863
Q ss_pred c--EEEE----eecCCceEEEEEeCC-eEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCC
Q 022387 167 R--CIGE----LSFRSEVRSVKLRRD-RIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (298)
Q Consensus 167 ~--~~~~----~~~~~~v~~v~~~~~-~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~d 238 (298)
. ++.. +.......|++...+ .++++. .|.||+||-...+.-..|.+-..|+..++++.++ .++++ ..+
T Consensus 563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG--kwila--Tc~ 638 (794)
T PF08553_consen 563 GNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG--KWILA--TCK 638 (794)
T ss_pred CCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC--cEEEE--eec
Confidence 2 3321 112235667777665 455554 4899999954333223344445676666776655 77773 555
Q ss_pred ceEEEEE
Q 022387 239 GQVRVEH 245 (298)
Q Consensus 239 g~v~i~~ 245 (298)
..+.+.+
T Consensus 639 tyLlLi~ 645 (794)
T PF08553_consen 639 TYLLLID 645 (794)
T ss_pred ceEEEEE
Confidence 6666644
No 375
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.22 E-value=0.095 Score=52.28 Aligned_cols=59 Identities=22% Similarity=0.464 Sum_probs=43.8
Q ss_pred eEEEEecCCCceEEEEEcCCcceEeecccccceeEEE-----------ECCCCCEEEEEeCCCCEEEEEECC
Q 022387 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~-----------fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.++.+ |..+|.|++-.++......+++|...+..++ .||||+.||+++.||. ++.|.+.
T Consensus 196 ~~ic~-~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiy 265 (1283)
T KOG1916|consen 196 VYICY-GLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIY 265 (1283)
T ss_pred ceeee-ccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeee
Confidence 55554 8888999984444433355667877666654 6899999999999998 8888765
No 376
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=2.6 Score=44.10 Aligned_cols=135 Identities=11% Similarity=0.151 Sum_probs=82.1
Q ss_pred CCCeEEEEeCCCCcEEEEeec-CCceEEEEE-eC----------CeEEEEECCeEEEEEcCC----Ce---EEEEEeccC
Q 022387 154 PLNKVMIWDDHQSRCIGELSF-RSEVRSVKL-RR----------DRIIVVLEQKIFVYNFAD----LK---LLHQIETIA 214 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~-~~~v~~v~~-~~----------~~l~v~~~~~I~iwd~~~----~~---~i~~~~~~~ 214 (298)
.|+.+.+|+.+++.....+.. .+.|..|.. .+ ..+++++--.|.++-+.- +. ....++...
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 469999999999766666554 345666543 22 145556666777775521 11 111122223
Q ss_pred CCcceEEEEeCCCCeEEEEecCCCceEEE-EEcC----Cc-----------------ceEeec-ccccceeEEEECCCCC
Q 022387 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYA----SK-----------------RTKFIM-AHDSRIACFALTQDGQ 271 (298)
Q Consensus 215 ~~~~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~----~~-----------------~~~~~~-~H~~~V~~l~fspdg~ 271 (298)
..+.+.++....+|.++. +|-+++.-.+ |... .+ .+..+. .|..+|..|++...-.
T Consensus 177 dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 345555555555667666 3444433333 3321 01 011334 6778999999999999
Q ss_pred EEEEEeCCCCEEEEEECCC
Q 022387 272 LLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 272 ~lAt~S~Dgt~IrIWd~~t 290 (298)
.|-+-++.|+ |++||+..
T Consensus 256 IlY~lsek~~-v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGT-VSAYDIGG 273 (1311)
T ss_pred eeeeeccCce-EEEEEccC
Confidence 9999999999 99999986
No 377
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.78 E-value=11 Score=35.24 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=81.4
Q ss_pred CCCeEEEEeCCCCc-----EEEEeecCCceEEEEEeC-------CeEEEEECCeEEEEEcC--CCe-------EEEEEec
Q 022387 154 PLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-------DRIIVVLEQKIFVYNFA--DLK-------LLHQIET 212 (298)
Q Consensus 154 ~d~~v~iWD~~~~~-----~~~~~~~~~~v~~v~~~~-------~~l~v~~~~~I~iwd~~--~~~-------~i~~~~~ 212 (298)
..|.+||++...+. .+.+.+...+|..+.... ..+++..-.++.||.+. ++. .+..+..
T Consensus 45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye 124 (418)
T PF14727_consen 45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE 124 (418)
T ss_pred cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence 56999999986533 566778888999987542 35666667899999882 111 2222223
Q ss_pred cCCCcceEEEE---eCC-C-CeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 213 IANPKGLCAVS---QGV-G-SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 213 ~~~~~~~~~~s---~~~-d-~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
|.-+...+.+. +.+ . ..++. .=+-||.+.+++-+.-....+...---...|+|.+.-..|++++.+.. +.-+.
T Consensus 125 h~l~~~a~nm~~G~Fgg~~~~~~Ic-VQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~-l~~Yk 202 (418)
T PF14727_consen 125 HSLQRTAYNMCCGPFGGVKGRDFIC-VQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT-LECYK 202 (418)
T ss_pred EecccceeEEEEEECCCCCCceEEE-EEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee-EEEec
Confidence 33222222222 211 1 13343 368899999988765443322222334566778888888888888877 77766
Q ss_pred C
Q 022387 288 T 288 (298)
Q Consensus 288 ~ 288 (298)
+
T Consensus 203 y 203 (418)
T PF14727_consen 203 Y 203 (418)
T ss_pred H
Confidence 4
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.74 E-value=11 Score=38.53 Aligned_cols=177 Identities=12% Similarity=0.155 Sum_probs=104.6
Q ss_pred EEEEEcCCCceEEEEeeec-CCceEEEE--EecCCCEEEEEeCCCCC----CCCCCeEEEEeCCCC---cEEEEeecCCc
Q 022387 108 FRIYNCDPFREIFRRDFER-GGGIGVVE--MLFRCNILALVGGGPDP----QYPLNKVMIWDDHQS---RCIGELSFRSE 177 (298)
Q Consensus 108 i~vw~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~d~~v~iWD~~~~---~~~~~~~~~~~ 177 (298)
++++|-.+.+.+...++.. +....++. +.-+++...++|.+... .-..|.|.|+.+... +.+.+....+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 4567766666555554421 11222332 33344455555433210 002366888877663 33445556677
Q ss_pred eEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EEcCCcceEe--
Q 022387 178 VRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EHYASKRTKF-- 253 (298)
Q Consensus 178 v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~~~~~~~~~-- 253 (298)
|.++..-..+++++.+..|++|++.+.+.++.-..+..+...+.+...+ ..+++ |.--+.+.+ +.-..+....
T Consensus 832 v~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g--deI~V-gDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 832 VYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKG--DEIAV-GDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred eeehhhhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecC--cEEEE-eeccceEEEEEEeccCCceEEee
Confidence 8887766778888888999999998886666545566666677776655 55654 788888888 4433333332
Q ss_pred ecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 254 ~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
-..|..-++++.+-.+..+|. +-.+|. +.+-...
T Consensus 909 rD~~p~Wmtaveil~~d~ylg-ae~~gN-lf~v~~d 942 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEILDDDTYLG-AENSGN-LFTVRKD 942 (1096)
T ss_pred hhhCccceeeEEEecCceEEe-eccccc-EEEEEec
Confidence 235667788888866555443 445676 6555433
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.72 E-value=0.057 Score=51.79 Aligned_cols=130 Identities=8% Similarity=0.169 Sum_probs=79.0
Q ss_pred CCCeEEEEeCCCCcEE-EEe--ecCCceEEEEEeCC---eEEEEEC-----CeEEEEEcCCC--eEEE--EEeccCCCcc
Q 022387 154 PLNKVMIWDDHQSRCI-GEL--SFRSEVRSVKLRRD---RIIVVLE-----QKIFVYNFADL--KLLH--QIETIANPKG 218 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~-~~~--~~~~~v~~v~~~~~---~l~v~~~-----~~I~iwd~~~~--~~i~--~~~~~~~~~~ 218 (298)
.+|.|-+-.++...-- .++ .+.....+++|++- .++++.+ ..+.|||+.+. .+.. .|.+ ..-.+
T Consensus 78 atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~-~~l~g 156 (783)
T KOG1008|consen 78 ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS-STLDG 156 (783)
T ss_pred ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccc-ccccC
Confidence 4577877776543211 222 23346778888763 4554433 48999999654 2211 1222 01111
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECC-CCCEEEEEeCCCCEEEEEE
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp-dg~~lAt~S~Dgt~IrIWd 287 (298)
.-.+++.-+..++. +|.....+.+.|+.........-.+..|..+..+| .+.|+++.+ ||. |-|||
T Consensus 157 qns~cwlrd~klvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~-iAiwD 223 (783)
T KOG1008|consen 157 QNSVCWLRDTKLVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGD-IAIWD 223 (783)
T ss_pred ccccccccCcchhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCc-eeecc
Confidence 22455554445555 59988899998876443332233445678888898 889999988 887 99999
No 380
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.71 E-value=5.8 Score=39.86 Aligned_cols=120 Identities=13% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCeEE-EEEcCCCceE---EEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHGFR-IYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~gi~-vw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
+.++.+++.+.|-+.+|+|-.+|.+ .+.-+..+.. .......+.+++.+.+..++..+.++. ....|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-------Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-------TTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-------ecceeEE
Confidence 4589999999999999999998854 5533322111 111111255677777766666533444 2367999
Q ss_pred EeCCCCcE-EEEeecCC-ceEEEEEeCC--eEEEEECCeEEEEEcCCCeEEEEEe
Q 022387 161 WDDHQSRC-IGELSFRS-EVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIE 211 (298)
Q Consensus 161 WD~~~~~~-~~~~~~~~-~v~~v~~~~~--~l~v~~~~~I~iwd~~~~~~i~~~~ 211 (298)
+.+..... ...+..++ ...|..+++. .++++.+.-+.+|+....++.-+|.
T Consensus 198 y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 198 YSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 99885442 33344443 6778888753 3667777899999998777766776
No 381
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.51 E-value=11 Score=34.30 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=40.2
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~ 251 (298)
.|-+||+.+.+.+.++... .++.++.++.+..-.++++ ...+|.+.++|..+.+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~-~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYAL-SAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEE-ETTTTEEEEEETTT--E
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEE-cCCCCeEEEEeCcCCcE
Confidence 7999999999999998853 3466788888765455554 45689999999877654
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=2.1 Score=40.70 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=82.5
Q ss_pred EcCCCCEEE-EEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE-E
Q 022387 93 FNQDHGCFA-AGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC-I 169 (298)
Q Consensus 93 fs~dg~~la-sgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~-~ 169 (298)
...+.++|. +|.. +++.-.|++.++.+-.+.+ +..+..+.+.++...-.+.+.+.-...+++.|.-||.+-... .
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~--~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKF--EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeec--cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 344555544 5554 7777778899999888887 556777777655433322222222223678899999874221 1
Q ss_pred EEe----ecC--CceEEEEEeC-CeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387 170 GEL----SFR--SEVRSVKLRR-DRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (298)
Q Consensus 170 ~~~----~~~--~~v~~v~~~~-~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v 241 (298)
..+ ++. ....|.+... ..++++. +|.||+||-.....-.-+.+-..++.-+.++.++ .+|+ |..+..+
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG--Kwil--~Tc~tyL 494 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG--KWIL--ATCKTYL 494 (644)
T ss_pred eeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccC--cEEE--EecccEE
Confidence 111 121 2344444444 4555554 5899999973222222344455566666666655 6666 3555555
Q ss_pred EEE
Q 022387 242 RVE 244 (298)
Q Consensus 242 ~i~ 244 (298)
.+-
T Consensus 495 lLi 497 (644)
T KOG2395|consen 495 LLI 497 (644)
T ss_pred EEE
Confidence 553
No 383
>PHA03098 kelch-like protein; Provisional
Probab=91.21 E-value=15 Score=35.47 Aligned_cols=130 Identities=13% Similarity=0.172 Sum_probs=62.1
Q ss_pred CeEEEEeCCCCcEEEEee--cCCceEEEEEeCCeEEEEEC--------CeEEEEEcCCCeEEEEEeccCCC-cceEEEEe
Q 022387 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANP-KGLCAVSQ 224 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~--~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~~~~i~~~~~~~~~-~~~~~~s~ 224 (298)
+.+..||..+++....-. ....-.++....+.+.+.+. +.+..||..+.+= ..+.....+ ....++..
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~ 436 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYH 436 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEE
Confidence 568889988765432211 11112223334455555432 4688888865432 111111111 11223333
Q ss_pred CCCCeEEEEecCCC-------ceEEEEEcCCcceEee---cccccceeEEEECCCCCEEEEEeCC-----CCEEEEEECC
Q 022387 225 GVGSLVLVCPGLQK-------GQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTK-----GTLVRIFNTL 289 (298)
Q Consensus 225 ~~d~~~la~sGs~d-------g~v~i~~~~~~~~~~~---~~H~~~V~~l~fspdg~~lAt~S~D-----gt~IrIWd~~ 289 (298)
+ +.++++.|..+ ..+.++|..+..=..+ .........+.+ ++++++.||.+ +. |.++|..
T Consensus 437 ~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~ 511 (534)
T PHA03098 437 D--GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDK 511 (534)
T ss_pred C--CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCC
Confidence 3 35666533221 1366677665432221 111111222233 78888888875 35 8888887
Q ss_pred CC
Q 022387 290 DG 291 (298)
Q Consensus 290 tg 291 (298)
+.
T Consensus 512 ~~ 513 (534)
T PHA03098 512 TN 513 (534)
T ss_pred CC
Confidence 65
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.94 E-value=17 Score=35.75 Aligned_cols=185 Identities=10% Similarity=0.065 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCEEEEEc------CCe-EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCC-----CC
Q 022387 87 TLLHISFNQDHGCFAAGT------DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-----YP 154 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs------~~g-i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 154 (298)
.+...+++|||+.+|.-. ++. -.||-....+....... ......-.|++++..+.++..+.... ..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 678899999999877544 232 34665443332212211 22344445666666666654321000 01
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEEEEeCC--eEEEEECCeEEEEEc---CCCeEEEEEe----ccCCCcc-eEEEEe
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNF---ADLKLLHQIE----TIANPKG-LCAVSQ 224 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~--~l~v~~~~~I~iwd~---~~~~~i~~~~----~~~~~~~-~~~~s~ 224 (298)
.+.+.+.++..+.... .+...|..+.|+++ ++++..+++|.+=-+ ..++ .++. ....... ...+.+
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceE
Confidence 2344444555544332 44557899999875 555556777776332 3343 2221 0111111 245566
Q ss_pred CCCCeEEEEecCCCceEEEEEcC--CcceEeecc--cccceeEEEECCCCCEEEEEeCCCC
Q 022387 225 GVGSLVLVCPGLQKGQVRVEHYA--SKRTKFIMA--HDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 225 ~~d~~~la~sGs~dg~v~i~~~~--~~~~~~~~~--H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
-.++.+++ +..++...+|.+. ......+.. ....|..|+=+++ .++++- .++.
T Consensus 505 ~~~~~L~V--~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~-~~g~ 561 (591)
T PRK13616 505 RTGDSLVV--GRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTD-ARAV 561 (591)
T ss_pred ecCCEEEE--EecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEc-CCce
Confidence 66667655 3444444444433 222222233 3567888888874 455443 3543
No 385
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.89 E-value=18 Score=35.75 Aligned_cols=73 Identities=15% Similarity=0.031 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCCEEEEEcCCeEE-EEEcC---CCceEEEEeee--cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEE
Q 022387 86 PTLLHISFNQDHGCFAAGTDHGFR-IYNCD---PFREIFRRDFE--RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (298)
Q Consensus 86 ~~V~~v~fs~dg~~lasgs~~gi~-vw~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 159 (298)
..+..+..|++..++|.|++.|.+ |+-+. +....+...+. |...+.+++|+.+...+.... ..|+|.
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-------~~Gkv~ 149 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-------SQGKVV 149 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecC-------CCceEE
Confidence 356677789999999999998855 55332 22333444332 344566666666555444432 346666
Q ss_pred EEeCCC
Q 022387 160 IWDDHQ 165 (298)
Q Consensus 160 iWD~~~ 165 (298)
+-.+.+
T Consensus 150 ~~~L~s 155 (726)
T KOG3621|consen 150 LTELDS 155 (726)
T ss_pred EEEech
Confidence 655544
No 386
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.70 E-value=0.5 Score=45.85 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=29.6
Q ss_pred cceeEEEECC----CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 259 SRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 259 ~~V~~l~fsp----dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
..+..++++. +..+|++-+.|++ +||||+.+++++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Confidence 3566677776 6789999999999 999999999998763
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.70 E-value=12 Score=33.55 Aligned_cols=97 Identities=19% Similarity=0.124 Sum_probs=58.3
Q ss_pred EEEcC-CCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c----c--eEeecccccceeEEEECC
Q 022387 198 VYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K----R--TKFIMAHDSRIACFALTQ 268 (298)
Q Consensus 198 iwd~~-~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~----~--~~~~~~H~~~V~~l~fsp 268 (298)
+|-+. .+..++-+..+-.....++||+++...++ +-+..+.|.-+++.. . + ...+..+.+..-.++...
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~--aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV--ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE--EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 44443 44444444433333345677776643333 356666766665541 1 1 123334567788889999
Q ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|.+.+++-.+|..|.+|+.. |+++.++
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i 250 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEI 250 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEE
Confidence 999997666666239999988 9988775
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.30 E-value=12 Score=33.02 Aligned_cols=197 Identities=18% Similarity=0.169 Sum_probs=103.2
Q ss_pred CeEEEEEcCCCC-EEEEEcC-CeE-EEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEe
Q 022387 87 TLLHISFNQDHG-CFAAGTD-HGF-RIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (298)
Q Consensus 87 ~V~~v~fs~dg~-~lasgs~-~gi-~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD 162 (298)
+...|+|+|-.. -++.+-. ++. .++|....+........ ..+=.+.-.+++++.+|...-.+.+. .-|-|-|||
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~--~rGViGvYd 146 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP--NRGVIGVYD 146 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC--CCceEEEEe
Confidence 455688888654 4667766 444 48887766544333321 11223344567777776654433332 347799999
Q ss_pred CCCC-cEEEEeecCC-ceEEEEEeCC-eEEEEECCeEEEE--------------------EcCCCeEEEEEecc--CCCc
Q 022387 163 DHQS-RCIGELSFRS-EVRSVKLRRD-RIIVVLEQKIFVY--------------------NFADLKLLHQIETI--ANPK 217 (298)
Q Consensus 163 ~~~~-~~~~~~~~~~-~v~~v~~~~~-~l~v~~~~~I~iw--------------------d~~~~~~i~~~~~~--~~~~ 217 (298)
.+.+ +.+.++..++ -...+.+..+ ++++..++.|..- |-.+++++.+..-. ....
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 9864 4455665443 2233444433 3333334434333 32233333221111 1111
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEE-EEcC---------------CcceE-------eecccccceeEEEECCCCCEEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRV-EHYA---------------SKRTK-------FIMAHDSRIACFALTQDGQLLA 274 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~---------------~~~~~-------~~~~H~~~V~~l~fspdg~~lA 274 (298)
.+ ..++. ..||+|.. -.+. .+++. +..+-...|-+|+.+.+..+++
T Consensus 227 Si---------RHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 227 SI---------RHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred ce---------eeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 11 22332 34444444 2211 12221 1122345789999997777777
Q ss_pred EEeCCCCEEEEEECCCCcEEEe
Q 022387 275 TSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
..|-.|...-|||..+|.++.+
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEec
Confidence 7777777789999999988754
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.28 E-value=13 Score=33.26 Aligned_cols=187 Identities=11% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeeec-CC--ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-GG--GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 161 (298)
...+..|.|..+..-+|+|.... |+....++......... .. ......+.+......+++ ..+ +.+-
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG-------~~g-~ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVG-------EPG-LLLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEE-------ETT-EEEE
T ss_pred CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEc-------CCc-eEEE
Confidence 34899999997677788887654 44444433222221100 11 223333344444444444 223 3333
Q ss_pred eCCCCcEEEEeec----CCceEEEE-EeCCeEEEEECCeEEEEEcCC-CeEEEEEeccCCCcceEEEEeCCCCeEEEEec
Q 022387 162 DDHQSRCIGELSF----RSEVRSVK-LRRDRIIVVLEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (298)
Q Consensus 162 D~~~~~~~~~~~~----~~~v~~v~-~~~~~l~v~~~~~I~iwd~~~-~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sG 235 (298)
-...++.-..+.. ......+. +.+....+++.. =.||...+ ++.-+.+.. ........+...+|+.++++
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav-- 161 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV-- 161 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE--
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE--
Confidence 3334443333322 22333333 334433333332 22333322 222111111 12233445666778899986
Q ss_pred CCCceEEE-EEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 236 LQKGQVRV-EHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 236 s~dg~v~i-~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+..|.+.. |+-....-. .-+.-...|.+|.|+|++.+.+.+ ..|. |+.=+
T Consensus 162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~ 213 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSD 213 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE
T ss_pred ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEcc
Confidence 56677766 776543222 223345789999999999887766 5665 76655
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.69 E-value=22 Score=35.12 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec--CCceEEEEEeC-----CeEEEEECCeEEEEEcC---------
Q 022387 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRR-----DRIIVVLEQKIFVYNFA--------- 202 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~--~~~v~~v~~~~-----~~l~v~~~~~I~iwd~~--------- 202 (298)
.+.++++..+ ..++.|||.+.+....+-.+ ...|..++|.. ..++|+..+.|.+|.-.
T Consensus 40 ~~k~a~V~~~------~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 40 IKKIAVVDSS------RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred cCcEEEEECC------CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 4556666532 36799999999887666555 66898888853 24555667888888531
Q ss_pred CCeEEEEEeccC-CCcceEEEEeCCCCeEEEEecCCCceEEEEE
Q 022387 203 DLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (298)
Q Consensus 203 ~~~~i~~~~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~ 245 (298)
....++++.... .+..+-+..+-++|.+++. +. ..+.|++
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~--sG-Nqlfv~d 154 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG--SG-NQLFVFD 154 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEE--eC-CEEEEEC
Confidence 233455554321 1122335555566677763 32 2555544
No 391
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.64 E-value=8.2 Score=30.01 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=65.4
Q ss_pred EEEEcCCCCEEEEEcC-CeEEEEEcCCC--------ceEEEEeeecCCceEEEEEe-c----CCCEEEEEeCCCCCCCCC
Q 022387 90 HISFNQDHGCFAAGTD-HGFRIYNCDPF--------REIFRRDFERGGGIGVVEML-F----RCNILALVGGGPDPQYPL 155 (298)
Q Consensus 90 ~v~fs~dg~~lasgs~-~gi~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~d 155 (298)
.-.|....-.|++++. +.|.|++.... ..+..+.+ +..+.+++.. + ..+.|++ + ..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~Lli-G-------t~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLI-G-------TQ 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEE-e-------cc
Confidence 3456555667888877 55777764322 22334444 5566666542 2 2334444 4 35
Q ss_pred CeEEEEeCCCCcEEEEeecCCceEEEEEe-----CCeEEE-EECCeEEEEEcCCCeEEEEE
Q 022387 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLR-----RDRIIV-VLEQKIFVYNFADLKLLHQI 210 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~~~~v~~v~~~-----~~~l~v-~~~~~I~iwd~~~~~~i~~~ 210 (298)
..+..||+.+..-+...+...-|.++.+. +..+++ ..+..|.-||....+...+.
T Consensus 73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 77999999988766555555667676652 233443 34467888887776666554
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.48 E-value=13 Score=32.18 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCC-EEEEEcCCeE-EEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 87 TLLHISFNQDHG-CFAAGTDHGF-RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 87 ~V~~v~fs~dg~-~lasgs~~gi-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
.+.+++|+||.. ++|+..+.+. .-++. .++.+.+..+...++...+++.-++ .++++.. .++.+.++++.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~E------r~~~L~~~~~~ 94 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEE------RDQRLYIFTID 94 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-EEEEEET------TTTEEEEEEE-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEc------CCCcEEEEEEe
Confidence 599999999866 5555555553 33443 2455555555323556667765444 4555542 35888888873
Q ss_pred CC--c----EEEEee--cC----CceEEEEEeC--CeEEEEEC-CeEEEEEcCC---CeEEEEE--ecc------CCCcc
Q 022387 165 QS--R----CIGELS--FR----SEVRSVKLRR--DRIIVVLE-QKIFVYNFAD---LKLLHQI--ETI------ANPKG 218 (298)
Q Consensus 165 ~~--~----~~~~~~--~~----~~v~~v~~~~--~~l~v~~~-~~I~iwd~~~---~~~i~~~--~~~------~~~~~ 218 (298)
.. . ....+. +. ..+-.+++++ +.++++.+ .-.++|.+.. ...+... ... .....
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1 112222 22 2356677765 56666654 3444555432 1111111 111 11234
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--eecc--c-----ccceeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMA--H-----DSRIACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--~~~~--H-----~~~V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
.+++.+.. +.+++. ......|...|.+.+... .+.. | -...-.|+|.++|++.+++ +.+. ..+|
T Consensus 175 ~l~~~p~t-~~lliL-S~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNl-fy~f 247 (248)
T PF06977_consen 175 GLSYDPRT-GHLLIL-SDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNL-FYRF 247 (248)
T ss_dssp EEEEETTT-TEEEEE-ETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTE-EEEE
T ss_pred ceEEcCCC-CeEEEE-ECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCce-EEEe
Confidence 55665543 345554 566677777786665433 3332 1 1347899999999877765 5543 5444
No 393
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.34 E-value=27 Score=36.81 Aligned_cols=131 Identities=17% Similarity=0.215 Sum_probs=78.9
Q ss_pred CCCeEEEEeCCC-----Cc-----EEEEe---ecCCceEEEEEeCCeEEEEECCeEEEEEc-CCCeEEEEEeccCCCcce
Q 022387 154 PLNKVMIWDDHQ-----SR-----CIGEL---SFRSEVRSVKLRRDRIIVVLEQKIFVYNF-ADLKLLHQIETIANPKGL 219 (298)
Q Consensus 154 ~d~~v~iWD~~~-----~~-----~~~~~---~~~~~v~~v~~~~~~l~v~~~~~I~iwd~-~~~~~i~~~~~~~~~~~~ 219 (298)
.-|.+.|+|+-. ++ .+.++ +..++|..++--..+++++...+|.+|++ ++..++-. .--.-+..+
T Consensus 1063 ~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD~~~yv 1141 (1366)
T KOG1896|consen 1063 ARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGV-AFIDLPLYV 1141 (1366)
T ss_pred CcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceee-EEeccceeE
Confidence 348899999632 22 12222 23467888887788888888999999999 54444321 111112223
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeeccc--ccceeEEEECCCC--CEEEEEeCCCCEEEEEECC
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAH--DSRIACFALTQDG--QLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~H--~~~V~~l~fspdg--~~lAt~S~Dgt~IrIWd~~ 289 (298)
..+..-. +.+|+ |..-..|.+..++.+ ++..+..- .-.|.++.|--|| -+|+.+..|++ |+++-+.
T Consensus 1142 ~s~~~vk-nlIl~--gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN-i~vy~Y~ 1213 (1366)
T KOG1896|consen 1142 HSMKVVK-NLILA--GDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN-IHVYMYA 1213 (1366)
T ss_pred Eehhhhh-hheeh--hhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc-EEEEEeC
Confidence 3322221 23443 777777777444443 33333322 2358888887666 47888899999 9998755
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.25 E-value=27 Score=35.50 Aligned_cols=142 Identities=11% Similarity=0.159 Sum_probs=76.5
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceE----------------E-EEEeCCeEEEEE-----------CCeEEEEEcCCCe
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVR----------------S-VKLRRDRIIVVL-----------EQKIFVYNFADLK 205 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~----------------~-v~~~~~~l~v~~-----------~~~I~iwd~~~~~ 205 (298)
.|+.+.-.|.++|+....+.....|. + -....+.+++.. ++.|+-+|..+++
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 56888888998888776554322220 0 112234555542 3689999999999
Q ss_pred EEEEEeccC-C---C--c---------ce-EEEEeCCCCeEEEE-ecC----------------CCceEEEEEcCCcceE
Q 022387 206 LLHQIETIA-N---P--K---------GL-CAVSQGVGSLVLVC-PGL----------------QKGQVRVEHYASKRTK 252 (298)
Q Consensus 206 ~i~~~~~~~-~---~--~---------~~-~~~s~~~d~~~la~-sGs----------------~dg~v~i~~~~~~~~~ 252 (298)
++.++.... . + . .. ..++.|++..++.+ +|. ..+.|.-.|.++.+++
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 998886421 0 0 0 00 12233333222222 111 1122222444444433
Q ss_pred -eecc--cc-------cceeEEEECC-CCC---EEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 253 -FIMA--HD-------SRIACFALTQ-DGQ---LLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 253 -~~~~--H~-------~~V~~l~fsp-dg~---~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.++. |+ ....-+.+.. +|+ .++.+..+|. +.++|-++|+.+..
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVP 484 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEee
Confidence 3322 21 1122223333 664 8999999999 99999999998864
No 395
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=88.67 E-value=15 Score=31.81 Aligned_cols=157 Identities=9% Similarity=0.098 Sum_probs=80.4
Q ss_pred CceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCC-eEEEEE--CCeEEEEEcC
Q 022387 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRD-RIIVVL--EQKIFVYNFA 202 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~-~l~v~~--~~~I~iwd~~ 202 (298)
..+..+++.++.+.++.+.+. ++.|...+. +|+.++.+.+.+ ..-.|++-.+ .+++.. .+.+.++++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~------~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE------PGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT------TTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCccccEEcCCCCeEEEEECC------CCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 357888998888877777743 477777776 478888877653 5666776554 444444 3688888883
Q ss_pred CC------eEEEEEec--c-CCC--cceEEEEeCCCCeEEEEecCCCceEEEEEcCC--c--ceE--e------eccccc
Q 022387 203 DL------KLLHQIET--I-ANP--KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTK--F------IMAHDS 259 (298)
Q Consensus 203 ~~------~~i~~~~~--~-~~~--~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~--~--~~~--~------~~~H~~ 259 (298)
.. ....++.. . ..- ...+++.+.. +.++++ -...-..++.+.. . .+. . ...+..
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~--kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVA--KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEE--EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEE--eCCCChhhEEEccccCccceeeccccccccccceec
Confidence 21 11223331 1 111 2344544433 234442 3444445544432 1 111 1 122445
Q ss_pred ceeEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 260 ~V~~l~fspd-g~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.+..++|+|. |.+++-+..... |-++| .+|+.+..
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~ 207 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSS 207 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEE
T ss_pred cccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEE
Confidence 6899999986 567777666666 88889 77776654
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.94 E-value=12 Score=37.60 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=28.4
Q ss_pred cccceeEEEECCC---CCEEEEEeCCCCEEEEEECCCCc
Q 022387 257 HDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 257 H~~~V~~l~fspd---g~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
+...|..+.|+|. +..|+.-..|++ +|+||+...+
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~-lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNT-LRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCE-EEEEecCCCC
Confidence 3457999999987 478888888999 9999997643
No 397
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=87.48 E-value=24 Score=32.63 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=91.8
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEEE----CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~~----~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d 227 (298)
.++.|.+.|..+...+...........+.+.+ ..+.++. ++++.+.|-.+.+.+.+......| .-+++.++
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~-- 170 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPD-- 170 (381)
T ss_pred CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCC--
Confidence 35889999988877777666554455556654 4555553 368888888888888887665555 44455554
Q ss_pred CeEEEEecCCCceEEEEEcCCcceEe-----ecccccceeEEEECCCCCEEEEEeCC---CCEEEEEECCCCcEEEe
Q 022387 228 SLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 228 ~~~la~sGs~dg~v~i~~~~~~~~~~-----~~~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIWd~~tg~~l~~ 296 (298)
+..+.+.-..++.|.+.+.....+.. ...-......++++|+|.++-..-.. +. +.+.|..++.....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~ 246 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTAT 246 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEe
Confidence 45444335678899998866654442 12223456889999999855444333 57 88999988877643
No 398
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.41 E-value=2 Score=39.16 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=43.9
Q ss_pred CceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 238 dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.+.+.|+|++++....+......+....|||+|+++|-.. ++. |.+++..+++..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n-ly~~~~~~~~~~ 76 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN-LYLRDLATGQET 76 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTE-EEEESSTTSEEE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCc-eEEEECCCCCeE
Confidence 4678889999987776665578899999999999999997 677 999998887443
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.13 E-value=10 Score=35.50 Aligned_cols=41 Identities=7% Similarity=-0.093 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEEe
Q 022387 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRD 123 (298)
Q Consensus 83 ~~~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~~ 123 (298)
..+..+.+|..+|++++.|+...-| |.++|+.....+..++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 4455799999999999888865544 7799998876655554
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.77 E-value=28 Score=32.75 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=83.2
Q ss_pred CCCEEEEEcC--CeEEEEEcCC--CceEEEEeee----cC-Cce---EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeC
Q 022387 96 DHGCFAAGTD--HGFRIYNCDP--FREIFRRDFE----RG-GGI---GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (298)
Q Consensus 96 dg~~lasgs~--~gi~vw~~~~--~~~~~~~~~~----~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~ 163 (298)
+.++|+..+- +.|.|+|+.+ .+....+.+. +. .++ .-+.+.++++.++.+=|+.+. -..+.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence 5668887774 3366777753 2322222221 01 111 122334556565554333221 14577888898
Q ss_pred CCCcEEEEeecCC--c--eEEEEEeCC--eEEEE---------------------ECCeEEEEEcCCCeEEEEEeccCCC
Q 022387 164 HQSRCIGELSFRS--E--VRSVKLRRD--RIIVV---------------------LEQKIFVYNFADLKLLHQIETIANP 216 (298)
Q Consensus 164 ~~~~~~~~~~~~~--~--v~~v~~~~~--~l~v~---------------------~~~~I~iwd~~~~~~i~~~~~~~~~ 216 (298)
++-+.....+... . -+.+.+++. .++.. -.+++.+||+.+.+.++++.-....
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 8877776665432 2 223334442 22221 0248999999999999999875432
Q ss_pred --cceEEEEeCCCCeEEEEecCCCceEEE-EEcCCc-----ceEeecc-----------------cccceeEEEECCCCC
Q 022387 217 --KGLCAVSQGVGSLVLVCPGLQKGQVRV-EHYASK-----RTKFIMA-----------------HDSRIACFALTQDGQ 271 (298)
Q Consensus 217 --~~~~~~s~~~d~~~la~sGs~dg~v~i-~~~~~~-----~~~~~~~-----------------H~~~V~~l~fspdg~ 271 (298)
...+.|..+++...=.+.+.-.++|.. +..... ++..+.. -..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 234566667664332221222334444 332221 1222211 123489999999988
Q ss_pred EEEEEe-CCCCEEEEEECCCC
Q 022387 272 LLATSS-TKGTLVRIFNTLDG 291 (298)
Q Consensus 272 ~lAt~S-~Dgt~IrIWd~~tg 291 (298)
+|-.+. .+|. ||.||+..-
T Consensus 325 fLYvs~W~~Gd-vrqYDISDP 344 (461)
T PF05694_consen 325 FLYVSNWLHGD-VRQYDISDP 344 (461)
T ss_dssp EEEEEETTTTE-EEEEE-SST
T ss_pred EEEEEcccCCc-EEEEecCCC
Confidence 776665 4887 999999864
No 401
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.38 E-value=18 Score=32.10 Aligned_cols=110 Identities=10% Similarity=0.050 Sum_probs=69.9
Q ss_pred CCcEEEEeecCCceEEEEEeCC---eEEEEEC--CeEEEEEcCCCeEEEEEeccCC--CcceEEEEeCCCCeEEEEec--
Q 022387 165 QSRCIGELSFRSEVRSVKLRRD---RIIVVLE--QKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPG-- 235 (298)
Q Consensus 165 ~~~~~~~~~~~~~v~~v~~~~~---~l~v~~~--~~I~iwd~~~~~~i~~~~~~~~--~~~~~~~s~~~d~~~la~sG-- 235 (298)
.++++..+........+.+++- -++.+-. .-..++|..+.+.+.++..... -.+--.|++++ .+|-++-
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG--~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG--RLLYATEND 134 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC--cEEEeecCC
Confidence 3566666666666666777763 2222322 3566888877777666654322 22333555554 6555321
Q ss_pred --CCCceEEEEEcCCcc--eEeecccccceeEEEECCCCCEEEEE
Q 022387 236 --LQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATS 276 (298)
Q Consensus 236 --s~dg~v~i~~~~~~~--~~~~~~H~~~V~~l~fspdg~~lAt~ 276 (298)
...|.|-|||...+- +-.+..|.-....|.+.+||++|+.+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 224788889987543 44788888888999999999999987
No 402
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.08 E-value=35 Score=33.25 Aligned_cols=112 Identities=19% Similarity=0.157 Sum_probs=61.5
Q ss_pred ceEEEEEeCC-------eEEEEECCeEEEEEcC-----CCeEEEEEecc---CCCcceEEEEeCCCCeEEEEecCCCceE
Q 022387 177 EVRSVKLRRD-------RIIVVLEQKIFVYNFA-----DLKLLHQIETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (298)
Q Consensus 177 ~v~~v~~~~~-------~l~v~~~~~I~iwd~~-----~~~~i~~~~~~---~~~~~~~~~s~~~d~~~la~sGs~dg~v 241 (298)
.|..+.|.+- .+++-..+.|.+|-+. ..+.+.+-..+ .-|+..--.-++|...+|++-...|-.|
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV 137 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV 137 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE
Confidence 5888888652 4555566899999883 33333332211 1222222223455556666533434333
Q ss_pred EE-EEcCCcceEeecccccceeEEEECCCCCEEEEE-eCCCCEEEEEECC
Q 022387 242 RV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTL 289 (298)
Q Consensus 242 ~i-~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~-S~Dgt~IrIWd~~ 289 (298)
.. -..+..+++.=-.-.+-|.|-||.+||+.|+.+ +..=. -.|||-.
T Consensus 138 ~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH-SyiWd~~ 186 (671)
T PF15390_consen 138 LPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH-SYIWDSA 186 (671)
T ss_pred eeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE-EEEecCc
Confidence 33 222334444222345779999999999887776 32323 5788843
No 403
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.04 E-value=43 Score=34.17 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=85.3
Q ss_pred CCCCeEEEEEcCC-CCEEEEEcCCe-EEEEEcCCC----ceEEEEeeecCCce----------EEEEEecCCCEEEEEeC
Q 022387 84 PPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPF----REIFRRDFERGGGI----------GVVEMLFRCNILALVGG 147 (298)
Q Consensus 84 ~~~~V~~v~fs~d-g~~lasgs~~g-i~vw~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 147 (298)
...+...|+|+|. ...||+-..+| .-||++... ...........+.+ .-+.|..+.+.++++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~- 222 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN- 222 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence 3457789999984 46789888877 569999211 11111110011111 2334545555555554
Q ss_pred CCCCCCCCCeEEEEeCCCCcE---EEEeecCCceEEEEEeCC---eEEEEECCeEEEEEcCC----CeEEEEEeccCC--
Q 022387 148 GPDPQYPLNKVMIWDDHQSRC---IGELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD----LKLLHQIETIAN-- 215 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~~~---~~~~~~~~~v~~v~~~~~---~l~v~~~~~I~iwd~~~----~~~i~~~~~~~~-- 215 (298)
...+.++|+++... +...+....|..+.-++. ++++.+...|...++.. .+.+-..+....
T Consensus 223 -------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~ 295 (765)
T PF10214_consen 223 -------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPE 295 (765)
T ss_pred -------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCC
Confidence 46688888887644 222223346777766554 88899999999999865 233333333222
Q ss_pred -CcceEEEEeC-CCCeEEEEecCCCceEEEEEcC
Q 022387 216 -PKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYA 247 (298)
Q Consensus 216 -~~~~~~~s~~-~d~~~la~sGs~dg~v~i~~~~ 247 (298)
+-.-+.+... .+..++++....+..|.+|.+.
T Consensus 296 D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f~ 329 (765)
T PF10214_consen 296 DPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFFS 329 (765)
T ss_pred CCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEEe
Confidence 2222233222 3333333334556667777663
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=85.56 E-value=35 Score=32.65 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=66.4
Q ss_pred CEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCC--ceEEEEEeCCeEEEEEC-----CeEEEEEcCCCeEEEEEec
Q 022387 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVLE-----QKIFVYNFADLKLLHQIET 212 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~--~v~~v~~~~~~l~v~~~-----~~I~iwd~~~~~~i~~~~~ 212 (298)
+.+.++||.+ ....+..||..+++....-.... .-.++....+.+.+.+. ..+..||..+.+= .....
T Consensus 319 ~~iYviGG~~----~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-~~~~~ 393 (480)
T PHA02790 319 NKLYVVGGLP----NPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-QFGPS 393 (480)
T ss_pred CEEEEECCcC----CCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-EeCCC
Confidence 4455555432 22568889987765432212221 12233334455555432 3577788754431 11111
Q ss_pred cCCCc-ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceE---eecccccceeEEEECCCCCEEEEEeCC-----CCEE
Q 022387 213 IANPK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK-----GTLV 283 (298)
Q Consensus 213 ~~~~~-~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~---~~~~H~~~V~~l~fspdg~~lAt~S~D-----gt~I 283 (298)
-..+. ...+...+ +.+.++ | |.+.+++.++..=. .+.........+. -+|+..+.||.+ .+ |
T Consensus 394 m~~~r~~~~~~~~~--~~IYv~-G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~-v 464 (480)
T PHA02790 394 TYYPHYKSCALVFG--RRLFLV-G---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT-I 464 (480)
T ss_pred CCCccccceEEEEC--CEEEEE-C---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce-E
Confidence 11111 12233333 366664 5 34667777654311 1211111222222 378899999865 34 7
Q ss_pred EEEECCCCc
Q 022387 284 RIFNTLDGT 292 (298)
Q Consensus 284 rIWd~~tg~ 292 (298)
.+||..+++
T Consensus 465 e~Yd~~~~~ 473 (480)
T PHA02790 465 EVYNNRTYS 473 (480)
T ss_pred EEEECCCCe
Confidence 888887654
No 405
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.26 E-value=51 Score=34.37 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCeEEEEeCCC-Cc---EEEEeecCCceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 155 LNKVMIWDDHQ-SR---CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 155 d~~v~iWD~~~-~~---~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
++.+..+++.. +. .+........|.+++--.++++++....+++||+.+.+++++.....-+..+..+.... ..
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~R 988 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--AR 988 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--eE
Confidence 45577777543 33 23333445578888777778888889999999998887776654433344445555544 55
Q ss_pred EEEecCCCceEEE--EEcCCcceEeecccc--cceeEEEECCCCCEEEEEeCCCC
Q 022387 231 LVCPGLQKGQVRV--EHYASKRTKFIMAHD--SRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 231 la~sGs~dg~v~i--~~~~~~~~~~~~~H~--~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
+++ |...-.|.+ |+...+.+..+..-. ..|+++.+- |...+|.+..=|.
T Consensus 989 I~V-gD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGN 1041 (1205)
T KOG1898|consen 989 IVV-GDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGN 1041 (1205)
T ss_pred EEE-eeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCc
Confidence 665 444444444 777777766554332 336666553 3345666644444
No 406
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=85.20 E-value=31 Score=31.88 Aligned_cols=68 Identities=15% Similarity=-0.060 Sum_probs=28.8
Q ss_pred EEcCCCCEEEEEcC-Ce-EEEE--EcCCCceEEEEeeecCCc-eEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCC
Q 022387 92 SFNQDHGCFAAGTD-HG-FRIY--NCDPFREIFRRDFERGGG-IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 92 ~fs~dg~~lasgs~-~g-i~vw--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
+|.+||+.|+.+++ ++ -.+| |+++++..-.... .+. .....++...+.++.+. ..+.|+-.|+++.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--~g~~~~g~~~s~~~~~~~Yv~-------~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--PGDNTFGGFLSPDDRALYYVK-------NGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--S-B-TTT-EE-TTSSEEEEEE-------TTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--CCCCccceEEecCCCeEEEEE-------CCCeEEEEECCcC
Confidence 57889987776665 55 3355 5555543221111 111 11123345555555554 2356777777766
Q ss_pred cE
Q 022387 167 RC 168 (298)
Q Consensus 167 ~~ 168 (298)
+.
T Consensus 113 e~ 114 (386)
T PF14583_consen 113 EE 114 (386)
T ss_dssp -E
T ss_pred cE
Confidence 54
No 407
>PRK10115 protease 2; Provisional
Probab=85.15 E-value=45 Score=33.58 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCEEEEEcC-Ce-----EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEE
Q 022387 87 TLLHISFNQDHGCFAAGTD-HG-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~-~g-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 160 (298)
.+..+.++|||++||-+.+ +| +++.++.++..+... + .+....+.|..+++.++........ .....|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i--~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L--DNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c--cCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEE
Confidence 5778899999999998766 44 446677665422111 1 1222457788788777776542210 13467888
Q ss_pred EeCCCCc--EEEEeecC-CceE-EEEE--eCCeEEEEE----CCeEEEEEc--CCCeEEEEEeccCCCcceEEEEeCCCC
Q 022387 161 WDDHQSR--CIGELSFR-SEVR-SVKL--RRDRIIVVL----EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGS 228 (298)
Q Consensus 161 WD~~~~~--~~~~~~~~-~~v~-~v~~--~~~~l~v~~----~~~I~iwd~--~~~~~i~~~~~~~~~~~~~~~s~~~d~ 228 (298)
+++.+++ ...-+... .... .+.. ....+++.. ++.+.+|+. .+.+....+. +..... ..+....+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~- 280 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP-RRKDHE-YSLDHYQH- 280 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE-CCCCCE-EEEEeCCC-
Confidence 9998873 22222221 2222 2222 233444432 257888884 2333222222 222121 22222223
Q ss_pred eEEEEecC--CCceEEEEEcC-CcceEeeccc-c-cceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 229 LVLVCPGL--QKGQVRVEHYA-SKRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 229 ~~la~sGs--~dg~v~i~~~~-~~~~~~~~~H-~-~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
.+++.+-. .+..|...++. ......+..+ . ..|..+.+.. ..++++...+|. -+|+-+.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~-~~l~~~~ 344 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGL-TSLRQIN 344 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCE-EEEEEEc
Confidence 34433322 22233334443 2233445555 3 3688888873 356666666765 6665544
No 408
>PHA02713 hypothetical protein; Provisional
Probab=84.80 E-value=14 Score=36.18 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCe------EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC-C---------------
Q 022387 95 QDHGCFAAGTDHG------FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-Q--------------- 152 (298)
Q Consensus 95 ~dg~~lasgs~~g------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 152 (298)
-+|++.+.|+.++ +..||..+..+.....+. ...........++ .+.+.||.+.. .
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp-~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP-IALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC-cccccccEEEECC-EEEEEeCCCccccccccccccccccccc
Confidence 3677777777532 557887776654333321 1111111112234 44444443210 0
Q ss_pred -CCCCeEEEEeCCCCcEEEE--eecCCceEEEEEeCCeEEEEEC--------CeEEEEEcCC---CeEEEEEeccCCCcc
Q 022387 153 -YPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFAD---LKLLHQIETIANPKG 218 (298)
Q Consensus 153 -~~d~~v~iWD~~~~~~~~~--~~~~~~v~~v~~~~~~l~v~~~--------~~I~iwd~~~---~~~i~~~~~~~~~~~ 218 (298)
..-+++..||.++.+.... +.....-.+++...+.+.+.+. ..+..||..+ .+.+..+.......+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 0124688899888754322 2121112233444455555432 2467888865 333333333222222
Q ss_pred eEEEEeCCCCeEEEEecCCCc--eEEEEEcCCcc
Q 022387 219 LCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKR 250 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg--~v~i~~~~~~~ 250 (298)
...+ ++.+.++ |+.+| .+..+|..+.+
T Consensus 508 ~~~~----~~~iyv~-Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH----DNTIMML-HCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE----CCEEEEE-eeecceeehhhcCccccc
Confidence 2222 2366665 77777 44446666543
No 409
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.38 E-value=4.8 Score=28.99 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=31.3
Q ss_pred cCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEE
Q 022387 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS 276 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~ 276 (298)
+..+|.+.-||..+++..++..--...+.|++++|+.+|+.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 566889999999999887666555678999999999977666
No 410
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.53 E-value=4.4 Score=23.88 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=20.9
Q ss_pred CCCCEEEEE-eCCCCEEEEEECCCCcEEEec
Q 022387 268 QDGQLLATS-STKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 268 pdg~~lAt~-S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
|++++|..+ -.+++ |.++|..+++.+.++
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i 30 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATI 30 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEE
Confidence 567655554 44666 999999999887664
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.39 E-value=10 Score=32.12 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=47.1
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCCcceE--------eec-------ccccceeEEEECCCCCEEEEEeCCCCEEE
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--------FIM-------AHDSRIACFALTQDGQLLATSSTKGTLVR 284 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~--------~~~-------~H~~~V~~l~fspdg~~lAt~S~Dgt~Ir 284 (298)
+.+...+ ..++| -+.+|.+++||+...+.. .+. .....|..+.++.+|.-|++-+ +|. ..
T Consensus 16 ~~l~~~~-~~Ll~--iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~-~y 90 (219)
T PF07569_consen 16 SFLECNG-SYLLA--ITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD-SY 90 (219)
T ss_pred EEEEeCC-CEEEE--EeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC-EE
Confidence 3344443 23454 488999999999875422 122 3556799999999999999987 677 89
Q ss_pred EEECCCC
Q 022387 285 IFNTLDG 291 (298)
Q Consensus 285 IWd~~tg 291 (298)
.|+..-+
T Consensus 91 ~y~~~L~ 97 (219)
T PF07569_consen 91 SYSPDLG 97 (219)
T ss_pred Eeccccc
Confidence 9986643
No 412
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.90 E-value=5.1 Score=23.39 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=20.1
Q ss_pred ccccceeEEEECCCCCEEEEEeCC---CCEEEEE
Q 022387 256 AHDSRIACFALTQDGQLLATSSTK---GTLVRIF 286 (298)
Q Consensus 256 ~H~~~V~~l~fspdg~~lAt~S~D---gt~IrIW 286 (298)
.....-...+|||||++|+=++.- |. -.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 344567888999999888877653 55 6665
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=82.73 E-value=33 Score=34.43 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=61.6
Q ss_pred CCeEEEEECCeEEEEEcCCCeEE------EEEec----------------cCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387 185 RDRIIVVLEQKIFVYNFADLKLL------HQIET----------------IANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (298)
Q Consensus 185 ~~~l~v~~~~~I~iwd~~~~~~i------~~~~~----------------~~~~~~~~~~s~~~d~~~la~sGs~dg~v~ 242 (298)
.+.++++..+.|.||++...... ..+.. ..+.+.-+.+..=++..+|++ +.+||.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~-c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLL-CTDDGDVL 127 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEE-EecCCeEE
Confidence 77788888888999987432211 11110 001122233333333455554 89999999
Q ss_pred EEEcCC------------c---------ceEeecccccceeEEEEC--CCCCEEEEEeCCCCEEEEEECCC
Q 022387 243 VEHYAS------------K---------RTKFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 243 i~~~~~------------~---------~~~~~~~H~~~V~~l~fs--pdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+|..+. + +...++ -...++.|+++ ...++||.++.-.. |.||-+..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l 196 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFAL 196 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-EEEEEEec
Confidence 997531 0 011122 23478999998 77888888876666 99987664
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.38 E-value=9.1 Score=32.49 Aligned_cols=30 Identities=7% Similarity=0.212 Sum_probs=21.4
Q ss_pred EecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387 135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE 171 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~ 171 (298)
+...++.+..++ .+|.+++||+.+++++..
T Consensus 18 l~~~~~~Ll~iT-------~~G~l~vWnl~~~k~~~~ 47 (219)
T PF07569_consen 18 LECNGSYLLAIT-------SSGLLYVWNLKKGKAVLP 47 (219)
T ss_pred EEeCCCEEEEEe-------CCCeEEEEECCCCeeccC
Confidence 334556666666 579999999999876543
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.24 E-value=17 Score=36.70 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEcCC----------C-ceEEEEee--e-------cCCceEEEEEecC---CCEEE
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDP----------F-REIFRRDF--E-------RGGGIGVVEMLFR---CNILA 143 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~~~----------~-~~~~~~~~--~-------~~~~~~~~~~~~~---~~~~~ 143 (298)
.|..|.+|++|++||..+..|+.|-.+-. + ..+..+.+ . ....+..+.|.+. ...++
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 79999999999999999898876654421 1 11111211 1 1223445556554 24455
Q ss_pred EEeCCCCCCCCCCeEEEEeCCCC
Q 022387 144 LVGGGPDPQYPLNKVMIWDDHQS 166 (298)
Q Consensus 144 ~~~~~~~~~~~d~~v~iWD~~~~ 166 (298)
+.. .|+++|+||+...
T Consensus 166 vLt-------sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLT-------SDNTLRLYDISDP 181 (717)
T ss_pred EEe-------cCCEEEEEecCCC
Confidence 555 6899999998753
No 416
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.00 E-value=3.7 Score=22.86 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 272 LLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 272 ~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+..++.+|. +..+|.++|+.+.++
T Consensus 8 ~v~~~~~~g~-l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGT-LYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCE-EEEEEcccCcEEEEc
Confidence 4666777898 999999999998876
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=81.27 E-value=5.8 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=22.3
Q ss_pred CeEEEEEcCC-C--CEEEEEcCCe-EEEEEcCC
Q 022387 87 TLLHISFNQD-H--GCFAAGTDHG-FRIYNCDP 115 (298)
Q Consensus 87 ~V~~v~fs~d-g--~~lasgs~~g-i~vw~~~~ 115 (298)
.|+++.|||+ + ++||..-+.+ +-|+|+.+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6899999974 4 5888776655 66999874
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.87 E-value=62 Score=32.11 Aligned_cols=107 Identities=12% Similarity=0.120 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCEEEEEcC-CeEEEEEcCCCceEEEEeeecCCceEEEEEec--CCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 88 LLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 88 V~~v~fs~dg~~lasgs~-~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
..-+.-|.-++.-++.++ ..+.|||......++...+...+.+..++|.+ ++..+..+| -.+.|.++--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-------f~~~v~l~~Q~ 104 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-------FPHHVLLYTQL 104 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-------cCcEEEEEEcc
Confidence 334444554554444444 44789999988877777764467778888754 445555555 46778887531
Q ss_pred -----C----CcEEEEeec----CCceEEEEEeCCeEE-EEECCeEEEEEc
Q 022387 165 -----Q----SRCIGELSF----RSEVRSVKLRRDRII-VVLEQKIFVYNF 201 (298)
Q Consensus 165 -----~----~~~~~~~~~----~~~v~~v~~~~~~l~-v~~~~~I~iwd~ 201 (298)
. -..+.++.. ..+|....|.+++.+ ++.++.+.|+|-
T Consensus 105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1 123444432 246778888776555 456789999975
No 419
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=79.96 E-value=3 Score=24.48 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=18.7
Q ss_pred EEeCCCCEEEEEECCCCcEEEec
Q 022387 275 TSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 275 t~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.++.||. |.-.|.++|+.+.+|
T Consensus 5 ~~~~~g~-l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 5 VGTPDGY-LYALDAKTGKVLWKF 26 (38)
T ss_dssp EETTTSE-EEEEETTTTSEEEEE
T ss_pred EeCCCCE-EEEEECCCCCEEEee
Confidence 3488998 999999999998776
No 420
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.07 E-value=28 Score=27.10 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=39.0
Q ss_pred CCeEEEEeCCC--------CcEEEEeecCCceEEEEEe-------CCeEEEEECCeEEEEEcCCCeE
Q 022387 155 LNKVMIWDDHQ--------SRCIGELSFRSEVRSVKLR-------RDRIIVVLEQKIFVYNFADLKL 206 (298)
Q Consensus 155 d~~v~iWD~~~--------~~~~~~~~~~~~v~~v~~~-------~~~l~v~~~~~I~iwd~~~~~~ 206 (298)
-++|.|.+... ...+..+++...|.+++-. .+.|++++...+..||+.+..-
T Consensus 19 ~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d 85 (136)
T PF14781_consen 19 GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD 85 (136)
T ss_pred CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch
Confidence 37788888653 3456778888889888642 4678888899999999965543
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=78.48 E-value=63 Score=31.63 Aligned_cols=109 Identities=10% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCC-----CEEEEEcCCeEEEEEcCC-----CceEEEEeeecCCce----EEEEEecCCCEEEEEeCCCCC
Q 022387 86 PTLLHISFNQDH-----GCFAAGTDHGFRIYNCDP-----FREIFRRDFERGGGI----GVVEMLFRCNILALVGGGPDP 151 (298)
Q Consensus 86 ~~V~~v~fs~dg-----~~lasgs~~gi~vw~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 151 (298)
..|.+++|.|-+ .+||+-..+-+.||-+.. .+.+......-.... ..+.|++....+++..+.+
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-- 134 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-- 134 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc--
Confidence 469999999843 488888888889997652 333333222101111 1234666777777777432
Q ss_pred CCCCCeEEEEeCCC--CcEEEEeecCCceEEEEEeC--CeEEEEECC--eEEEEEc
Q 022387 152 QYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRR--DRIIVVLEQ--KIFVYNF 201 (298)
Q Consensus 152 ~~~d~~v~iWD~~~--~~~~~~~~~~~~v~~v~~~~--~~l~v~~~~--~I~iwd~ 201 (298)
.-.+.+++. .+....++..+.|.|.+|.. ++++++.+. .-++||-
T Consensus 135 -----vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 135 -----VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred -----eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 234555543 34455667777899988864 578887765 4557775
No 422
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.78 E-value=17 Score=35.18 Aligned_cols=30 Identities=13% Similarity=0.380 Sum_probs=24.0
Q ss_pred CCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeec
Q 022387 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~ 174 (298)
....+++++ .|+++|+||+.+++++.+...
T Consensus 229 ~~~~l~tl~-------~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 229 DDTFLFTLS-------RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTTEEEEEE-------TTSEEEEEETTTTCEEEEEET
T ss_pred CCCEEEEEe-------CCCeEEEEECCCCeEEEEecc
Confidence 556777777 789999999999999766543
No 423
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.17 E-value=22 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.2
Q ss_pred cceeEEEECCCC------CEEEEEeCCCCEEEEEECCC
Q 022387 259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 259 ~~V~~l~fspdg------~~lAt~S~Dgt~IrIWd~~t 290 (298)
..|..++|||-| -+||....++. |.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecCC
Confidence 379999999954 48999999999 99998664
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=96 Score=31.25 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.9
Q ss_pred ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 258 ~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+.+.-|..||++++||---++|. |.+-+....+++-+|
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEF 254 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhcc
Confidence 466888999999999999999999 888888777766555
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=75.00 E-value=98 Score=31.21 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=45.2
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEe--ecccccceeEEEECCC-----CC-EEEEEeCCCCEEEEEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKF--IMAHDSRIACFALTQD-----GQ-LLATSSTKGTLVRIFN 287 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~--~~~H~~~V~~l~fspd-----g~-~lAt~S~Dgt~IrIWd 287 (298)
..++++......+||+ ++....|.|+.+... +... -..|...|-+|+|-++ |. +++.++-.|. +-+|+
T Consensus 167 WGLdIh~~~~~rlIAV-SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~-v~~~~ 244 (717)
T PF08728_consen 167 WGLDIHDYKKSRLIAV-SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE-VWTFK 244 (717)
T ss_pred eEEEEEecCcceEEEE-ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCc-EEEEE
Confidence 3456653345578886 777778888555432 2111 1135667999999754 32 8889999999 87887
Q ss_pred C
Q 022387 288 T 288 (298)
Q Consensus 288 ~ 288 (298)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 426
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=74.86 E-value=85 Score=30.46 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCeEEEEEcC---CCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCC------------------CCC
Q 022387 96 DHGCFAAGTDHGFRIYNCD---PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP------------------QYP 154 (298)
Q Consensus 96 dg~~lasgs~~gi~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 154 (298)
||++|.+..++.+.|++.. ..+...+..+ .+. ...+--+++.+++.+..... ...
T Consensus 21 DG~yIY~v~~~~l~Iida~p~~~~~~~s~I~~--~~~--~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (521)
T PF09826_consen 21 DGEYIYVVSGGRLYIIDAYPAEEMKVVSRIDL--DGS--PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKS 96 (521)
T ss_pred CCCEEEEEeCCEEEEEECCCchhceEEEEEec--CCC--hhheEEcCCEEEEEEeccccccccccccccccccccccCCc
Confidence 8999999998889999984 3444444444 233 33333345555555432210 001
Q ss_pred CCeEEEEeCCCC---cEEEEeecCCceEEEEEeCCeEEEEECCeEEEE
Q 022387 155 LNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY 199 (298)
Q Consensus 155 d~~v~iWD~~~~---~~~~~~~~~~~v~~v~~~~~~l~v~~~~~I~iw 199 (298)
--.+.++|+... +.+.++...+...+...-.+.+.+.+...+.++
T Consensus 97 ~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~ 144 (521)
T PF09826_consen 97 STKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY 144 (521)
T ss_pred eeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence 234788887653 456667776666666666777777777666666
No 427
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=74.84 E-value=62 Score=28.84 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCC
Q 022387 95 QDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (298)
Q Consensus 95 ~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~ 164 (298)
-++++|+.|.+.|+.+.+.........+-+ +...+..+.+...-+.+++.+|. ...++++|+.
T Consensus 11 ~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk------~~~L~~~~L~ 73 (302)
T smart00036 11 CDGKWLLVGTEEGLYVLNISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGK------KPQLYSHPLS 73 (302)
T ss_pred cCCcEEEEEeCCceEEEEcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCC------cceEEEEEHH
Confidence 345799999999988777654311222322 35678888888777877777742 2449999873
No 428
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.41 E-value=97 Score=30.92 Aligned_cols=158 Identities=13% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCe-EEEEEcCCCceEE--EEeeecCCceEEEEE--ec----CCCEEEEEeC-CCCCCCC
Q 022387 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIF--RRDFERGGGIGVVEM--LF----RCNILALVGG-GPDPQYP 154 (298)
Q Consensus 85 ~~~V~~v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~--~~~~~~~~~~~~~~~--~~----~~~~~~~~~~-~~~~~~~ 154 (298)
..+|..|.|.++++.+++-.+.| +++|+.+...... .....+...+..-.+ .+ ..+.+.+++. .. .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~----~ 204 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSN----S 204 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCC----C
Confidence 45899999999999988888755 8899983222111 111101111111111 11 1344555443 11 1
Q ss_pred CCeEEEEeCC-CCcEEEEee-----cCC-ceEEEEEeCCeEEEEECCeEEEEEcCCCeEEEEEeccC--CC--cceEEEE
Q 022387 155 LNKVMIWDDH-QSRCIGELS-----FRS-EVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA--NP--KGLCAVS 223 (298)
Q Consensus 155 d~~v~iWD~~-~~~~~~~~~-----~~~-~v~~v~~~~~~l~v~~~~~I~iwd~~~~~~i~~~~~~~--~~--~~~~~~s 223 (298)
.-..|++.+. ....+.++. ... .-..+++....+....+++|.+|.+...+..+++.... .. ...+++.
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 2346777772 223333332 111 22234455556666678999999999888888876431 11 2344554
Q ss_pred eCCCCeEEEEecCCCceEEEEEcCCc
Q 022387 224 QGVGSLVLVCPGLQKGQVRVEHYASK 249 (298)
Q Consensus 224 ~~~d~~~la~sGs~dg~v~i~~~~~~ 249 (298)
+-..+++|. +.+.+|.+.|+...
T Consensus 285 ~~s~nRvLL---s~~nkIyLld~~~~ 307 (670)
T PF10395_consen 285 PPSPNRVLL---SVNNKIYLLDLKFE 307 (670)
T ss_pred cCCCCeEEE---EcCCEEEEEeehhh
Confidence 433446665 56678888887644
No 429
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=73.71 E-value=77 Score=29.41 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=72.5
Q ss_pred ecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCc-eEEEEEeC--CeEEEE-ECCeEEEEEcCCCeEEEEEe
Q 022387 136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE-VRSVKLRR--DRIIVV-LEQKIFVYNFADLKLLHQIE 211 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~-v~~v~~~~--~~l~v~-~~~~I~iwd~~~~~~i~~~~ 211 (298)
..+++.+++++.-+ ....+.+-|+.+++..+-...... .....+++ +.++-. ....++-.|+.+.+.-..+.
T Consensus 44 t~dG~kllF~s~~d----g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 44 TDDGRKLLFASDFD----GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -TTS-EEEEEE-TT----SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCCCEEEEEeccC----CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 34577788877432 356788889999887765554321 11222232 333333 34688899998877655555
Q ss_pred ccCCCcceEEEEeCCCCeEEEEecCC-----------------------CceEEEEEcCCcceEeecccccceeEEEECC
Q 022387 212 TIANPKGLCAVSQGVGSLVLVCPGLQ-----------------------KGQVRVEHYASKRTKFIMAHDSRIACFALTQ 268 (298)
Q Consensus 212 ~~~~~~~~~~~s~~~d~~~la~sGs~-----------------------dg~v~i~~~~~~~~~~~~~H~~~V~~l~fsp 268 (298)
......+......+.|+..++ |.. ...|..-++.+++..++..-+.-+.-+.|||
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~--g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLV--GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEE--EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred CCcccccccceeeCCCccEEE--EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 555555555555555666654 211 1222334455555555444455678888998
Q ss_pred CCCEEEEEeCCC----CEEEEEECCC
Q 022387 269 DGQLLATSSTKG----TLVRIFNTLD 290 (298)
Q Consensus 269 dg~~lAt~S~Dg----t~IrIWd~~t 290 (298)
.-..+++-+..| ..-|||=+.+
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred CCCCEEEEeccCCcceeceEEEEEEc
Confidence 765555553333 1137787653
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.34 E-value=73 Score=30.81 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEEc
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYNC 113 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~~ 113 (298)
.|..|..|+.|..+|-.+-+|+.|..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 578899999999999888899877655
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.34 E-value=17 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCceEEEEEcCCcce---EeecccccceeEEEECCCCCEEEEEeCC
Q 022387 236 LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTK 279 (298)
Q Consensus 236 s~dg~v~i~~~~~~~~---~~~~~H~~~V~~l~fspdg~~lAt~S~D 279 (298)
.....|.+|++..... .+|.- -+.|..|+++..|.||+|-=.+
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 3445799999874332 23432 3789999999999999998443
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.25 E-value=97 Score=30.44 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCe------EEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387 96 DHGCFAAGTDHG------FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (298)
Q Consensus 96 dg~~lasgs~~g------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~ 169 (298)
+|.+.|+|+.+| +-.||..+.++....... ....+......++. +.+++|.+...-.-+++..+|..++...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCCCcee
Confidence 688888888765 446776666654443321 11222222233443 4444443321102377999999888754
Q ss_pred EEee--cCCceEEEEEeCCeEEEEEC-------CeEEEEEcCCCe
Q 022387 170 GELS--FRSEVRSVKLRRDRIIVVLE-------QKIFVYNFADLK 205 (298)
Q Consensus 170 ~~~~--~~~~v~~v~~~~~~l~v~~~-------~~I~iwd~~~~~ 205 (298)
..-. ....-..++.-.+.+.++++ .+|..||..+.+
T Consensus 458 ~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 4322 22233345555566665542 358888886543
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=64 Score=31.19 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=26.3
Q ss_pred ceeEEEECCCC---CEEEEEeCCCCEEEEEECCCCcEE
Q 022387 260 RIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 260 ~V~~l~fspdg---~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
.+..++|+|+. ..|..-+.|.+ |||||+.+-+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnv-iRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNV-IRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcE-EEEEecCCcchh
Confidence 47888999985 56666677998 999998875443
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=73.13 E-value=83 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=32.7
Q ss_pred cccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Q 022387 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (298)
Q Consensus 255 ~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~ 295 (298)
......+.+|+.+|++++.|+...=|. |-|+|+.++..++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvr 343 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVR 343 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhh
Confidence 334456899999999999999866778 9999999987664
No 435
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.32 E-value=98 Score=30.04 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEec
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg~~l~~~ 297 (298)
.|.++..+..||. ++.+|.+||+.+.++
T Consensus 471 ~g~lvf~g~~~G~-l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 471 AGDLVFYGTLEGY-FKAFDAKTGEELWKF 498 (527)
T ss_pred CCcEEEEECCCCe-EEEEECCCCCEeEEE
Confidence 4556777888998 999999999999876
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.02 E-value=30 Score=36.37 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=36.5
Q ss_pred cCCCceEEEEEcCCcceE-eecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 235 GLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~-~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
...|+.|++-.++..... .--.-...++|++|+|.|+.++.|-..|+ +.-|-
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~ 226 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE 226 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe-EEEee
Confidence 577888888555432211 11134567999999999999999999998 65554
No 437
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=71.87 E-value=11 Score=32.17 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=21.9
Q ss_pred EEEcCCCCEEEEEcCCe-EEEEEcCCCceEEEE
Q 022387 91 ISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR 122 (298)
Q Consensus 91 v~fs~dg~~lasgs~~g-i~vw~~~~~~~~~~~ 122 (298)
|.--.++.+..+|..+| +|.|++.+.+.+-..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeee
Confidence 33335666777887766 789999988765443
No 438
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=71.27 E-value=1.3e+02 Score=31.64 Aligned_cols=85 Identities=12% Similarity=0.153 Sum_probs=51.8
Q ss_pred CeEEEEeCCCCcEEEEeec---CCceEEEEEeCCeEEEEEC-CeEEEEEc-CCCeEEEEEeccCCCcceEEEEe-CCCCe
Q 022387 156 NKVMIWDDHQSRCIGELSF---RSEVRSVKLRRDRIIVVLE-QKIFVYNF-ADLKLLHQIETIANPKGLCAVSQ-GVGSL 229 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~---~~~v~~v~~~~~~l~v~~~-~~I~iwd~-~~~~~i~~~~~~~~~~~~~~~s~-~~d~~ 229 (298)
+.++++|+.+++.++.... ...|..+.+...+++++.. ..|+++.. +..+.+..|.....+..+.+... |. .
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~--~ 1031 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDY--D 1031 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecC--C
Confidence 7799999988877665443 4578888888999998864 56665544 23444556654444444433322 22 3
Q ss_pred EEEEecCCCceEEE
Q 022387 230 VLVCPGLQKGQVRV 243 (298)
Q Consensus 230 ~la~sGs~dg~v~i 243 (298)
.+|. +..-|.+.+
T Consensus 1032 tvag-aDrfGNi~~ 1044 (1205)
T KOG1898|consen 1032 TVAG-ADRFGNIAV 1044 (1205)
T ss_pred ceee-ccccCcEEE
Confidence 4442 565566555
No 439
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.76 E-value=25 Score=33.19 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=36.5
Q ss_pred cCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Q 022387 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (298)
Q Consensus 235 Gs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~ 292 (298)
=+.+|.+........+...+..--..+.-+++||++.+|++-. .|. |+++.+++..
T Consensus 334 l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gk-i~~~~l~Nr~ 389 (733)
T COG4590 334 LYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGK-IRLAQLENRN 389 (733)
T ss_pred EcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCc-eEEEEecCCC
Confidence 3666777774443333333333334678889999999998763 445 9999988753
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=70.40 E-value=77 Score=28.04 Aligned_cols=132 Identities=13% Similarity=0.189 Sum_probs=73.0
Q ss_pred CeEEEEeCCCCcEEEEeecCCc-------eEEEEEeC--C----eEEEEEC---CeEEEEEcCCCeEEEEEeccCCCcc-
Q 022387 156 NKVMIWDDHQSRCIGELSFRSE-------VRSVKLRR--D----RIIVVLE---QKIFVYNFADLKLLHQIETIANPKG- 218 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~~~~~~~~-------v~~v~~~~--~----~l~v~~~---~~I~iwd~~~~~~i~~~~~~~~~~~- 218 (298)
-+|.+||+.+++.++.+.++.. ...+.+.. . .++-.+| ..|.+||+.+++.-+.+..+..+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 4688999999999998887543 34455543 1 3444443 5999999999887666554333221
Q ss_pred eE-------EEEeCCCCeEEEEec---CCCceEEEEE-cCCcc-----------------e-----Eeecccc-cceeEE
Q 022387 219 LC-------AVSQGVGSLVLVCPG---LQKGQVRVEH-YASKR-----------------T-----KFIMAHD-SRIACF 264 (298)
Q Consensus 219 ~~-------~~s~~~d~~~la~sG---s~dg~v~i~~-~~~~~-----------------~-----~~~~~H~-~~V~~l 264 (298)
.. .+... ++ .+.++. +.||...+|. +.... . .+..+.. +....+
T Consensus 114 ~~~~~i~g~~~~~~-dg-~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWP-DG-IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEET-TS-EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred ccceeccCceEecC-CC-ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 01 12211 11 111111 2243222222 11110 0 0111222 356788
Q ss_pred EECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 265 ALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 265 ~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+++++|.++.+--..+. |..|+..+
T Consensus 192 ~~D~~G~ly~~~~~~~a-I~~w~~~~ 216 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNA-IGCWDPDG 216 (287)
T ss_dssp EEETTTEEEEEECCCTE-EEEEETTT
T ss_pred EECCCCcEEEecCCCCe-EEEEeCCC
Confidence 99999999999998888 99999876
No 441
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=70.40 E-value=1.3e+02 Score=30.72 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.7
Q ss_pred CCCEEEEEECCCCcEEEec
Q 022387 279 KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 279 Dgt~IrIWd~~tg~~l~~~ 297 (298)
+|. |+-+|.+||+++.++
T Consensus 335 ~G~-I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 335 SGV-IRAFDVNTGALVWAW 352 (764)
T ss_pred CcE-EEEEECCCCcEeeEE
Confidence 677 999999999998765
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.01 E-value=89 Score=28.59 Aligned_cols=111 Identities=11% Similarity=0.081 Sum_probs=56.6
Q ss_pred ceEEEEEeCCeEEEEECCeEEEE-EcCC-C----e---EEEEEeccC--CCcceEEEEeCCCCeEEEEecCCC-------
Q 022387 177 EVRSVKLRRDRIIVVLEQKIFVY-NFAD-L----K---LLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQK------- 238 (298)
Q Consensus 177 ~v~~v~~~~~~l~v~~~~~I~iw-d~~~-~----~---~i~~~~~~~--~~~~~~~~s~~~d~~~la~sGs~d------- 238 (298)
....+.+.++.++++....|..| |... + + ++..+.... .......+...+|+.+.+.-|+..
T Consensus 73 ~p~Gi~~~~~GlyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 73 MVTGLAVAVGGVYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred CccceeEecCCEEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 45677787777777766666655 4421 1 1 111222210 012233444555656655445321
Q ss_pred -----------ceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 239 -----------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 239 -----------g~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
|.|.-++........+..--.....++|+|+|+++++-..++...+|-.
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred CCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCceeEEcc
Confidence 2233344444333333222345679999999999988665544344433
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=69.65 E-value=41 Score=27.15 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCeEEEEE
Q 022387 87 TLLHISFNQDHGCFAAGTDHGFRIYN 112 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~~gi~vw~ 112 (298)
...+|+||.||+ ||+..++.|.|.+
T Consensus 6 ~~~~l~WS~Dg~-laV~t~~~v~IL~ 30 (173)
T PF12657_consen 6 CPNALAWSEDGQ-LAVATGESVHILD 30 (173)
T ss_pred CCcCeeECCCCC-EEEEcCCeEEEEe
Confidence 346899999995 7777788877773
No 444
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=68.63 E-value=13 Score=20.17 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=16.6
Q ss_pred eeEEEECCCCCEEEEEeCCCCEEEEE
Q 022387 261 IACFALTQDGQLLATSSTKGTLVRIF 286 (298)
Q Consensus 261 V~~l~fspdg~~lAt~S~Dgt~IrIW 286 (298)
...|+++++|.++++=+.... |++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~r-V~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHR-VQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTE-EEEE
T ss_pred CcEEEEeCCCCEEEEECCCCE-EEEC
Confidence 456777777777777666655 6554
No 445
>PRK13616 lipoprotein LpqB; Provisional
Probab=67.98 E-value=67 Score=31.73 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=36.6
Q ss_pred cceEEEEeCCCCeEEEEecC-----CCc--eEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 217 KGLCAVSQGVGSLVLVCPGL-----QKG--QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 217 ~~~~~~s~~~d~~~la~sGs-----~dg--~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
+...++++++ ..+|+.-. .|+ .|.+.+..........+. ..+.-.|+|||+.|++.+....++++.+
T Consensus 352 vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 352 ITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccceECCCC--CEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 3455666655 55555331 233 444444433322222332 3888899999999998874423344443
No 446
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=67.63 E-value=6.4 Score=38.51 Aligned_cols=49 Identities=31% Similarity=0.467 Sum_probs=39.0
Q ss_pred EEEEEcCCcc-eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECC
Q 022387 241 VRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (298)
Q Consensus 241 v~i~~~~~~~-~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~ 289 (298)
+.+-|++... ...|++|+.++..++|.+.|.+|++++--|..|.+|.+.
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim 346 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM 346 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec
Confidence 3444444433 458999999999999999999999999999877777754
No 447
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=64.60 E-value=36 Score=31.91 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=48.7
Q ss_pred cCCceEEEEEeCCeEEEEE---CCeEEEEEcCCC---eEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEE--EE
Q 022387 174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRV--EH 245 (298)
Q Consensus 174 ~~~~v~~v~~~~~~l~v~~---~~~I~iwd~~~~---~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i--~~ 245 (298)
...+|.++.|-.+.+.+.+ .+-+.+.|+.+. +.+..++. |..+.-+++-+.+.+|.+ |..+|.++| +|
T Consensus 426 ~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKI---PGfS~YLHpigen~~lGv-G~~~g~vKiSLFd 501 (603)
T COG4880 426 PGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKI---PGFSEYLHPIGENRLLGV-GAYQGGVKISLFD 501 (603)
T ss_pred CCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEec---CCchhhccccCCCcEEEe-ecccCCceEEEEe
Confidence 3458999999988777665 267888888654 44444443 334445677777888886 999998888 66
Q ss_pred cC
Q 022387 246 YA 247 (298)
Q Consensus 246 ~~ 247 (298)
..
T Consensus 502 iS 503 (603)
T COG4880 502 IS 503 (603)
T ss_pred cc
Confidence 54
No 448
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.43 E-value=63 Score=27.93 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=48.2
Q ss_pred EEEeCCCCeEEEEecCCCceEEEEEcC--Ccc------eEeecc----cccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 221 AVSQGVGSLVLVCPGLQKGQVRVEHYA--SKR------TKFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 221 ~~s~~~d~~~la~sGs~dg~v~i~~~~--~~~------~~~~~~----H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
.++++.+...+-+.-+.+=.|.-||++ ++. +..++. -.-..-.+++..+|.++++.-.-++ |.-+|.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp 240 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDP 240 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECC
Confidence 455555555544445666666666643 221 222222 1122455667788999988877777 999999
Q ss_pred CCCcEEEec
Q 022387 289 LDGTLLQEG 297 (298)
Q Consensus 289 ~tg~~l~~~ 297 (298)
.+||.+.|+
T Consensus 241 ~tGK~L~ei 249 (310)
T KOG4499|consen 241 TTGKILLEI 249 (310)
T ss_pred CCCcEEEEE
Confidence 999999886
No 449
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.24 E-value=1.4e+02 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=25.3
Q ss_pred cceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 259 ~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
..|.+|+..+..++|.+...+|. |++|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~-Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGS-IQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE--EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCc-EEEEEEeC
Confidence 34999999988899999999999 99999984
No 450
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=61.16 E-value=1.2e+02 Score=26.96 Aligned_cols=198 Identities=15% Similarity=0.117 Sum_probs=92.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCe--EEEEEcCCCce--------------EEEEeeecCCceEEEEEecCCCEEEEEeC
Q 022387 84 PPPTLLHISFNQDHGCFAAGTDHG--FRIYNCDPFRE--------------IFRRDFERGGGIGVVEMLFRCNILALVGG 147 (298)
Q Consensus 84 ~~~~V~~v~fs~dg~~lasgs~~g--i~vw~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+..+|+++...+.-+.|++=+++. ++++++..... .....+.+.++.....+.-......++.+
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 345899999999888777766655 88888732221 00112212222222233322223333332
Q ss_pred CCCCCCCCCeEEEEeCCCC----cEEEEe---ec--CCceEEEE----EeCCeEEEEECC-eEEEEEcCC--CeEEE-E-
Q 022387 148 GPDPQYPLNKVMIWDDHQS----RCIGEL---SF--RSEVRSVK----LRRDRIIVVLEQ-KIFVYNFAD--LKLLH-Q- 209 (298)
Q Consensus 148 ~~~~~~~d~~v~iWD~~~~----~~~~~~---~~--~~~v~~v~----~~~~~l~v~~~~-~I~iwd~~~--~~~i~-~- 209 (298)
...+|.++.+... .....+ .. +.++..+. +....+.++... ...++++.. ...-. .
T Consensus 121 ------~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl 194 (302)
T smart00036 121 ------LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSL 194 (302)
T ss_pred ------cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccc
Confidence 3466776543321 112221 11 12232222 223466666553 555665532 10000 0
Q ss_pred ---EeccC-CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce--EeecccccceeEEEECCCCCEEEEEeCCCCEE
Q 022387 210 ---IETIA-NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (298)
Q Consensus 210 ---~~~~~-~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~--~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~I 283 (298)
..... .+..+..+. ++.++.+ -.+..+.+........ ..+ .-...+.++++.. .+|..-+ +.. |
T Consensus 195 ~~~~~~~~~~p~~i~~l~---~~e~Llc--~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~~--pyll~~~-~~~-i 264 (302)
T smart00036 195 PFLSEETSLKPISVVQVP---RDEFLLC--YDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYHS--PYLLAFH-DNG-I 264 (302)
T ss_pred cccccccccCceEEEEEC---CCeEEEE--ECcEEEEEeCCCCccccceEE-EcCCcccEEEEEC--CEEEEEc-CCc-E
Confidence 00001 233333332 2355552 4444444433321111 122 2345677888874 4555554 555 9
Q ss_pred EEEECCCCcEEEec
Q 022387 284 RIFNTLDGTLLQEG 297 (298)
Q Consensus 284 rIWd~~tg~~l~~~ 297 (298)
.|+++.+++.++++
T Consensus 265 evr~l~~~~l~q~i 278 (302)
T smart00036 265 EIRSIKTGELLQEL 278 (302)
T ss_pred EEEECCCCceEEEE
Confidence 99999999987765
No 451
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=60.35 E-value=2e+02 Score=29.34 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=60.5
Q ss_pred eEEEEECCeEEEEE------cC---------CCeEEEEEec---cCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387 187 RIIVVLEQKIFVYN------FA---------DLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (298)
Q Consensus 187 ~l~v~~~~~I~iwd------~~---------~~~~i~~~~~---~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~ 248 (298)
.++|-+...+.|+. +. +..++.++.. ...+..-++|++....++.+ -+..|...||++..
T Consensus 100 ~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~Ai--VD~~G~Wsvw~i~~ 177 (765)
T PF10214_consen 100 WLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAI--VDEKGNWSVWDIKG 177 (765)
T ss_pred EEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEE--EeccCcEEEEEecc
Confidence 45555666777776 21 1234444442 33445556777655554444 48999999999921
Q ss_pred c------ceEeecccccc----------eeEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 249 K------RTKFIMAHDSR----------IACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 249 ~------~~~~~~~H~~~----------V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
. .......+.+. -..|.|.++...|+.++ ... +.++|+++...
T Consensus 178 ~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~-l~~~d~~~~~~ 236 (765)
T PF10214_consen 178 RPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSK-LMLIDFESNWQ 236 (765)
T ss_pred ccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCc-eEEEECCCCCc
Confidence 1 11111122222 34788988887787775 334 88999988754
No 452
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=59.98 E-value=1e+02 Score=29.91 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCCEEEEEeCCCCCCCCCCeEEEEeC---CCCcEEEEeecCCceEEEEEeCCeEEEEE
Q 022387 138 RCNILALVGGGPDPQYPLNKVMIWDD---HQSRCIGELSFRSEVRSVKLRRDRIIVVL 192 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~d~~v~iWD~---~~~~~~~~~~~~~~v~~v~~~~~~l~v~~ 192 (298)
++..+.++. ++.|.|+|. .+.+.+.++.+...+..+..+.+++++..
T Consensus 21 DG~yIY~v~--------~~~l~Iida~p~~~~~~~s~I~~~~~~~eLyl~gdrLvVi~ 70 (521)
T PF09826_consen 21 DGEYIYVVS--------GGRLYIIDAYPAEEMKVVSRIDLDGSPQELYLDGDRLVVIG 70 (521)
T ss_pred CCCEEEEEe--------CCEEEEEECCCchhceEEEEEecCCChhheEEcCCEEEEEE
Confidence 667777776 377999998 45667778888777777888888888765
No 453
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.91 E-value=63 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=23.8
Q ss_pred cceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 259 ~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
..-+.|+++|++++|..++.-+..|+|+....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45788999999988777765433499998653
No 454
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.03 E-value=1.6e+02 Score=31.36 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=68.7
Q ss_pred CeEEEEeCCCCcEEE---E--e-----ecCC--ceEEEEEeCC---eEEE-EECCeEEEEEcCCCeE-EEEEeccCCCcc
Q 022387 156 NKVMIWDDHQSRCIG---E--L-----SFRS--EVRSVKLRRD---RIIV-VLEQKIFVYNFADLKL-LHQIETIANPKG 218 (298)
Q Consensus 156 ~~v~iWD~~~~~~~~---~--~-----~~~~--~v~~v~~~~~---~l~v-~~~~~I~iwd~~~~~~-i~~~~~~~~~~~ 218 (298)
-.|..+|+++-..-. . + .+.. -+.++.|++. ..++ ..+..|++.-+..... +.++ .....
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~---p~t~~ 200 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF---PVTNS 200 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc---Ccccc
Confidence 468899987632211 1 1 1112 2445566663 2223 3467788776643221 1121 22244
Q ss_pred eEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecc----cccceeEEEECCCCCEEEEEe
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA----HDSRIACFALTQDGQLLATSS 277 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~----H~~~V~~l~fspdg~~lAt~S 277 (298)
..++++.+.+..+++ |..+|++.=|.-.......+.+ -...|.||+|-....+|+.-+
T Consensus 201 ~Tav~WSprGKQl~i-G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFI-GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eeeEEeccccceeeE-ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 567788888888886 9999998887766543222221 145799999988777777654
No 455
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.67 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=31.0
Q ss_pred EEEEEeCCeEEEEE-CCeEEEEEcCCCeEEEEEeccCCCcceEEEE
Q 022387 179 RSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (298)
Q Consensus 179 ~~v~~~~~~l~v~~-~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s 223 (298)
.++.-..+..+++- .++|...|..+++++.+++-....+.+|+|-
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 34443333333333 4799999999999999998876666666664
No 456
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=56.00 E-value=32 Score=18.74 Aligned_cols=24 Identities=8% Similarity=0.237 Sum_probs=19.7
Q ss_pred CceEEEEEeCCeEEEEEC-CeEEEE
Q 022387 176 SEVRSVKLRRDRIIVVLE-QKIFVY 199 (298)
Q Consensus 176 ~~v~~v~~~~~~l~v~~~-~~I~iw 199 (298)
..|.+++..+..++++++ +.+|+|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 357888888899999887 788887
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.70 E-value=1.7 Score=41.03 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCCCcEEEEeecCCceEEEEEeC--CeEEEE--ECCeEEEEEcCCCeEEEEEec-cCCCcceEEEEeCCCC
Q 022387 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR--DRIIVV--LEQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGS 228 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~--~~l~v~--~~~~I~iwd~~~~~~i~~~~~-~~~~~~~~~~s~~~d~ 228 (298)
.+..|..+|- .++.+.+.........++|.. +.+++. ..+.+.+||+.+... .++.. .........++. ..
T Consensus 54 a~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK--g~ 129 (615)
T KOG2247|consen 54 ANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK--GT 129 (615)
T ss_pred hhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc--CC
Confidence 3455677774 345555666655555555543 334433 358999999954321 12221 112222233333 33
Q ss_pred eEEEEecCCCceEEEEEcCCcceEeecc-cccceeEEEECCCCCEEEEEeCCCC
Q 022387 229 LVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 229 ~~la~sGs~dg~v~i~~~~~~~~~~~~~-H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
..+++ |...|.+.|+.....+.....+ |...++++++.+.+. .+.++.|..
T Consensus 130 ~el~i-g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 130 PELVI-GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred ccccc-cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 56664 8889999999988766554445 999999999998764 555555654
No 458
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=54.55 E-value=1.8e+02 Score=26.85 Aligned_cols=196 Identities=17% Similarity=0.078 Sum_probs=101.4
Q ss_pred EEEEcCCCCEEE-EEcCC---------e--EEEEEcCCCceE--EEEeeecCCc--eEEEEEecCCCEEEEEeCCCCCCC
Q 022387 90 HISFNQDHGCFA-AGTDH---------G--FRIYNCDPFREI--FRRDFERGGG--IGVVEMLFRCNILALVGGGPDPQY 153 (298)
Q Consensus 90 ~v~fs~dg~~la-sgs~~---------g--i~vw~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
.+.|.+||+.|. +..+. . +.+|.+.+.... ...+. .... ...+..+.++..+++.....
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~---- 248 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSG---- 248 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESS----
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcc----
Confidence 389999988654 54332 3 456666655332 22221 1222 34556677788777655433
Q ss_pred CC-CeEEEEeCCCC----cEEEEee--cCCceEEEEEeCCeEEEEEC-----CeEEEEEcCCCeE---EEEEeccCCCcc
Q 022387 154 PL-NKVMIWDDHQS----RCIGELS--FRSEVRSVKLRRDRIIVVLE-----QKIFVYNFADLKL---LHQIETIANPKG 218 (298)
Q Consensus 154 ~d-~~v~iWD~~~~----~~~~~~~--~~~~v~~v~~~~~~l~v~~~-----~~I~iwd~~~~~~---i~~~~~~~~~~~ 218 (298)
.+ ..+.+-|...+ .....+. .......+....+.+.+.++ +.|...++.+... ...+..+.....
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred ccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 33 66888888774 2222222 23344456666777777664 4777788866542 224444444334
Q ss_pred eEEEEeCCCCeEEEEecCCCce--EEEEEcC-CcceEeecc-cccceeEEEECCCCC-EEEEE-eC--CCCEEEEEECCC
Q 022387 219 LCAVSQGVGSLVLVCPGLQKGQ--VRVEHYA-SKRTKFIMA-HDSRIACFALTQDGQ-LLATS-ST--KGTLVRIFNTLD 290 (298)
Q Consensus 219 ~~~~s~~~d~~~la~sGs~dg~--v~i~~~~-~~~~~~~~~-H~~~V~~l~fspdg~-~lAt~-S~--Dgt~IrIWd~~t 290 (298)
...+....+..++ .-..++. |++++.. ......+.. -.+.|..+...+++. ++.+. |. ..+ |..+|+.+
T Consensus 329 l~~~~~~~~~Lvl--~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~-~y~~d~~t 405 (414)
T PF02897_consen 329 LEDVSLFKDYLVL--SYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPT-VYRYDLAT 405 (414)
T ss_dssp EEEEEEETTEEEE--EEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEE-EEEEETTT
T ss_pred EEEEEEECCEEEE--EEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCE-EEEEECCC
Confidence 4455554433333 3566664 4558887 544433222 234466666555543 33333 32 446 88889999
Q ss_pred CcE
Q 022387 291 GTL 293 (298)
Q Consensus 291 g~~ 293 (298)
|+.
T Consensus 406 ~~~ 408 (414)
T PF02897_consen 406 GEL 408 (414)
T ss_dssp TCE
T ss_pred CCE
Confidence 875
No 459
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=54.41 E-value=94 Score=32.12 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=75.0
Q ss_pred CCCeEEEEeCCCCcEEEEee-cCCceEEEEE---eC--------CeEEEEECCeEEEEEcC----CCeEEEEEeccC---
Q 022387 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKL---RR--------DRIIVVLEQKIFVYNFA----DLKLLHQIETIA--- 214 (298)
Q Consensus 154 ~d~~v~iWD~~~~~~~~~~~-~~~~v~~v~~---~~--------~~l~v~~~~~I~iwd~~----~~~~i~~~~~~~--- 214 (298)
.|+++.+||..+++..+.+. +...|..|.. .+ ..+++++...+.++-+. +++ +.-+.++-
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~E-ls~fnTgl~vs 178 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGE-LSLFNTGLVVS 178 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccce-eEEEecceEEe
Confidence 47999999998776554443 2334444432 12 24556666677776552 222 22233221
Q ss_pred -CCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC-----------------cc-----e---EeecccccceeEEEECC
Q 022387 215 -NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----------------KR-----T---KFIMAHDSRIACFALTQ 268 (298)
Q Consensus 215 -~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~-----------------~~-----~---~~~~~H~~~V~~l~fsp 268 (298)
..+.+.++-...+|.++. +|..| +.+|.+.- +. + ..+.-|...|..++...
T Consensus 179 vqGinV~civs~e~GrIFf-~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq 255 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFF-GGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ 255 (1263)
T ss_pred ccCceeEEEEeccCCcEEE-ecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc
Confidence 112333333334677777 46666 55555320 00 0 12335667888899887
Q ss_pred CCCEEEEEeCCCCEEEEEECCCC
Q 022387 269 DGQLLATSSTKGTLVRIFNTLDG 291 (298)
Q Consensus 269 dg~~lAt~S~Dgt~IrIWd~~tg 291 (298)
.-.+|-+-+.... ||-+.+...
T Consensus 256 sRg~ly~Lr~kS~-Vray~itkn 277 (1263)
T COG5308 256 SRGLLYVLRKKSA-VRAYSITKN 277 (1263)
T ss_pred cccceeeecccce-eeeEeeecc
Confidence 7778888887777 888876643
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.22 E-value=1.2e+02 Score=32.59 Aligned_cols=92 Identities=13% Similarity=0.291 Sum_probs=49.7
Q ss_pred eEEEEECCeEEEEEcCCCeEEEEEeccCCCcceE-EEEeCCC------CeEEEEecCCCceEEEEE----cCCcceEeec
Q 022387 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLC-AVSQGVG------SLVLVCPGLQKGQVRVEH----YASKRTKFIM 255 (298)
Q Consensus 187 ~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~~~-~~s~~~d------~~~la~sGs~dg~v~i~~----~~~~~~~~~~ 255 (298)
+..+..|+.+.+|++.+......+.+-.+.+..+ -+-+.+. ..+|++ +.. -.|.++- ..+.....+.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv-aT~-~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVV-ATP-VEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEe-ccc-ceEEEEEEEeccccCcccccc
Confidence 4455668999999998766666666544433322 2222221 012222 222 2333322 2222222222
Q ss_pred c------cccceeEEEECCCCCEEEEEeCCCC
Q 022387 256 A------HDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 256 ~------H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
. ....|+||....+|+.|.+|- ||.
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~ 200 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFFAGR-DGN 200 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEEeec-CCC
Confidence 2 245699999889999998885 666
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=52.19 E-value=1.5e+02 Score=25.17 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=55.7
Q ss_pred EEEcCCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE-eCCCC----cE-------
Q 022387 101 AAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW-DDHQS----RC------- 168 (298)
Q Consensus 101 asgs~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW-D~~~~----~~------- 168 (298)
++.+...|.+|+++..+......|..-+.+..+..+..++++++.-.... ......+|+| |++.. +.
T Consensus 33 va~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~-~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG 111 (215)
T PF14761_consen 33 VAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNK-RSPVDFVRAYFNWRSQKEENSPVRVRIAG 111 (215)
T ss_pred EEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecC-CccceEEEEEEEhhhhcccCCcEEEEEcc
Confidence 33444568899998554444444434566777777777888887653221 1012256765 32211 11
Q ss_pred ----------------EEEeecCCceEEEEEe--CCeEEEEECCeEEEEEcC
Q 022387 169 ----------------IGELSFRSEVRSVKLR--RDRIIVVLEQKIFVYNFA 202 (298)
Q Consensus 169 ----------------~~~~~~~~~v~~v~~~--~~~l~v~~~~~I~iwd~~ 202 (298)
+.++.....+.+++.- ...++++.++++.+|.+.
T Consensus 112 ~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~ 163 (215)
T PF14761_consen 112 HRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLK 163 (215)
T ss_pred cccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEE
Confidence 1222333344444443 356777788889888763
No 462
>PHA03098 kelch-like protein; Provisional
Probab=51.02 E-value=2.3e+02 Score=27.19 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=49.1
Q ss_pred CCCEEEEEcCC------eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEE
Q 022387 96 DHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (298)
Q Consensus 96 dg~~lasgs~~------gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~ 169 (298)
++++++.|+.+ .+..||..+.++.....+. ...........+ +.+.+.||-......-+.+..||..+++..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 57777777743 1346676665543322221 111111112223 344444542110001256889998876543
Q ss_pred EEeecC--CceEEEEEeCCeEEEEEC----------CeEEEEEcCCCe
Q 022387 170 GELSFR--SEVRSVKLRRDRIIVVLE----------QKIFVYNFADLK 205 (298)
Q Consensus 170 ~~~~~~--~~v~~v~~~~~~l~v~~~----------~~I~iwd~~~~~ 205 (298)
..-... ....++....+.+.+.+. ..+.+||..+.+
T Consensus 420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 221111 112233344555555432 137888886543
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.15 E-value=32 Score=34.60 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=40.4
Q ss_pred ceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEE
Q 022387 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 218 ~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd 287 (298)
..+++..+|.++-++ .++.||.|+++++..+....+..-..+-..+.|...|-+.|| .|+. +.-|.
T Consensus 16 ~~~aiqshp~~~s~v-~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~t--sdrr-~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFV-LAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTAT--SDRR-ALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEE-EEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEe--ccch-hheee
Confidence 356777777777776 499999999988765443222223334555666665644444 3665 55564
No 464
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=49.75 E-value=2e+02 Score=25.97 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=46.3
Q ss_pred ecCCCceEEEEEcCCcceEee--cccccceeEEEECC------CCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 234 PGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQ------DGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 234 sGs~dg~v~i~~~~~~~~~~~--~~H~~~V~~l~fsp------dg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
.|...|.|-+++.....+..+ .+.-...+.|+..| .|.+|+----||+ |.+||..+|+.+-+
T Consensus 217 ~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~ 286 (336)
T TIGR03118 217 AGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQ 286 (336)
T ss_pred cCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCce-eEEecCCCCceeee
Confidence 367778999999887766544 23445678888755 5778887766999 99999999886544
No 465
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=46.45 E-value=57 Score=18.78 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=18.5
Q ss_pred CCeEEEEeCCCCcEEEEeecCCceEEE
Q 022387 155 LNKVMIWDDHQSRCIGELSFRSEVRSV 181 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~~~v~~v 181 (298)
+++|.++|..+++.+..+........+
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i 39 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGV 39 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceE
Confidence 578899999888877776654433333
No 466
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=46.03 E-value=1.4e+02 Score=25.30 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=37.2
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCC---CeEEEEecCCCceEEEE--EcCCcceEeecccccceeEEEECCC
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQD 269 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d---~~~la~sGs~dg~v~i~--~~~~~~~~~~~~H~~~V~~l~fspd 269 (298)
+|.|+| .+++.++++.......+...|.|++. +..+. .|.+ .+.+- +...+.+..-..-.+.|..|.|..+
T Consensus 125 ~i~I~d-~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~-~G~Y--t~~v~a~~~~G~~~~~~~~~~g~V~~V~~~~~ 200 (221)
T PRK12634 125 NFEITD-ANGAFVKQISVPASAAGEVSFAWDGTDANGNRMA-AGKY--GVTATQTDTAGSKSKLSTYVQAPVDSVTIGSD 200 (221)
T ss_pred EEEEEc-CCCCEEEEEecCCcCCCceeEEECCCCCCCCcCC-Ceee--EEEEEEEeCCCcEEeeeeeEEEEEEEEEecCC
Confidence 455565 34555666554444445566666652 11221 1111 22221 1222222221222457999999877
Q ss_pred CCEEEEE
Q 022387 270 GQLLATS 276 (298)
Q Consensus 270 g~~lAt~ 276 (298)
|.+|-.+
T Consensus 201 g~~L~l~ 207 (221)
T PRK12634 201 GLYLNLT 207 (221)
T ss_pred ceEEEec
Confidence 7666544
No 467
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=45.18 E-value=66 Score=20.80 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=12.4
Q ss_pred eeEEEECCCCCEEEEEe
Q 022387 261 IACFALTQDGQLLATSS 277 (298)
Q Consensus 261 V~~l~fspdg~~lAt~S 277 (298)
+++++.-|||+.|+.|.
T Consensus 3 ~~~~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGY 19 (55)
T ss_pred eEEEEECCCCcEEEEEE
Confidence 56677777787777774
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.26 E-value=2.2e+02 Score=24.31 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=74.0
Q ss_pred CCeEEEEeCCCCcEEEEeecC-CceEE--EEEeCCeEEEEE--CCeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCe
Q 022387 155 LNKVMIWDDHQSRCIGELSFR-SEVRS--VKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~~-~~v~~--v~~~~~~l~v~~--~~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~ 229 (298)
-..|++||+.+++.+...+.. ..++. +.-..+.+...+ ++.-..||..+.+.+.++. ....-..+..+.++
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~---y~GeGWgLt~d~~~- 142 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS---YEGEGWGLTSDDKN- 142 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc---cCCcceeeecCCcc-
Confidence 356999999999988876655 23332 333445555443 5777888988877665543 22334455555543
Q ss_pred EEEEecCCCceEEEEEcCC----cceE-eeccc-ccceeEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEe
Q 022387 230 VLVCPGLQKGQVRVEHYAS----KRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 230 ~la~sGs~dg~v~i~~~~~----~~~~-~~~~H-~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~l~~ 296 (298)
|.. ++...+++.-|-++ +.+. ++.+. -+.++-+.| =||.+.|--=.+.. |-.-|..+|+++.-
T Consensus 143 -Lim-sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~-I~rI~p~sGrV~~w 211 (262)
T COG3823 143 -LIM-SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTR-IARIDPDSGRVVAW 211 (262)
T ss_pred -eEe-eCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecc-eEEEcCCCCcEEEE
Confidence 321 23333444433221 1111 22221 122344444 36777777777777 66668888887643
No 469
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=41.96 E-value=2.6e+02 Score=25.06 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=78.0
Q ss_pred EEEEcCCCCEEEEEcCCeEEEEEcCCCceEEEEeee-cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE
Q 022387 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (298)
Q Consensus 90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~ 168 (298)
.+..-.++..++.+ ..| .||.....+.-...... ..+.+..+....++.++++...| +-..-||.....-
T Consensus 108 ~i~~l~~~~~~l~~-~~G-~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w 178 (302)
T PF14870_consen 108 GITALGDGSAELAG-DRG-AIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTW 178 (302)
T ss_dssp EEEEEETTEEEEEE-TT---EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-
T ss_pred EEEEcCCCcEEEEc-CCC-cEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc-------cEEEEecCCCccc
Confidence 34443444444444 444 24544443332222110 13445555556777777666533 3356777544322
Q ss_pred E-EEeecCCceEEEEEeCCeEE-EEE-CCeEEEEEc-CCCeEEEE--EeccCCCcceEEEEeCCCCeEEEEecCCCceEE
Q 022387 169 I-GELSFRSEVRSVKLRRDRII-VVL-EQKIFVYNF-ADLKLLHQ--IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (298)
Q Consensus 169 ~-~~~~~~~~v~~v~~~~~~l~-v~~-~~~I~iwd~-~~~~~i~~--~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~ 242 (298)
. ........+.++.|.++..+ +.. .+.|++=+. .+.+.... +.......+.+.+.+.+++.+.|+ ...|.+.
T Consensus 179 ~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~--gg~G~l~ 256 (302)
T PF14870_consen 179 QPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAV--GGSGTLL 256 (302)
T ss_dssp EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEE--ESTT-EE
T ss_pred eEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEE--eCCccEE
Confidence 2 22223457888889876433 333 467777762 22222211 111123345677788777788884 3345555
Q ss_pred EEEcCCcceE----eecccccceeEEEECCCCCEEEEEeCCCC
Q 022387 243 VEHYASKRTK----FIMAHDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 243 i~~~~~~~~~----~~~~H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
+- .+..+.. ....-.+.++.|.|..+.+-||-| .||.
T Consensus 257 ~S-~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ 297 (302)
T PF14870_consen 257 VS-TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGV 297 (302)
T ss_dssp EE-SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTE
T ss_pred Ee-CCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcE
Confidence 42 2222211 122234568999998777888887 4887
No 470
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=41.21 E-value=1.9e+02 Score=24.69 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCC---eEEEEecCCCc--eEEEE--EcCCcceEeecccccceeEEEEC
Q 022387 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS---LVLVCPGLQKG--QVRVE--HYASKRTKFIMAHDSRIACFALT 267 (298)
Q Consensus 195 ~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~---~~la~sGs~dg--~v~i~--~~~~~~~~~~~~H~~~V~~l~fs 267 (298)
+|.|+|- +++.++++.......+...|.|++.. ..+ .+| ++.+- +...+.+..-..-.+.|..|.|.
T Consensus 132 ~v~I~D~-~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~-----~~G~Y~~~V~a~~~~G~~~~~~~~~~~~V~~V~~~ 205 (230)
T PRK12633 132 TVKVLDP-SGAVVRTMELGDLKTGVHTLQWDGNNDGGQPL-----ADGKYSITVSASDADAKPVKAEALTYGQVKSVAYS 205 (230)
T ss_pred EEEEEeC-CCCEEEEEecCCCCCCceeEEECCCCCCCCcC-----CCcceEEEEEEEeCCCcEEeeeeeEEEEEEEEEec
Confidence 3556663 55666666544444455566666521 111 123 22221 22222222111124579999998
Q ss_pred CCCCEEEEEeCCCCEEEEEE
Q 022387 268 QDGQLLATSSTKGTLVRIFN 287 (298)
Q Consensus 268 pdg~~lAt~S~Dgt~IrIWd 287 (298)
.++.+|..++ .+. |.+=|
T Consensus 206 ~~~~~l~l~~-~~~-v~l~~ 223 (230)
T PRK12633 206 TNGLRLDLGL-AGQ-ISMLD 223 (230)
T ss_pred CCceEEEEcC-CcE-EeHHH
Confidence 8887776653 344 65433
No 471
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=40.95 E-value=1.3e+02 Score=27.21 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCeEEEEecCCCceEEEEEcCCc-ceE----eecccccceeEEEECCCCCEEEEEeCCCC
Q 022387 227 GSLVLVCPGLQKGQVRVEHYASK-RTK----FIMAHDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 227 d~~~la~sGs~dg~v~i~~~~~~-~~~----~~~~H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
++.+++. ....+.|....++.. .+. .+......++.|++.|||.++++-+.+|.
T Consensus 270 ~g~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 270 RGDLFVA-DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp TTEEEEE-ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred cCcEEEe-cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence 3455553 444556655444422 221 23445558999999999999999988988
No 472
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=40.55 E-value=7.1 Score=20.44 Aligned_cols=9 Identities=33% Similarity=0.840 Sum_probs=6.3
Q ss_pred EECCCCCEE
Q 022387 265 ALTQDGQLL 273 (298)
Q Consensus 265 ~fspdg~~l 273 (298)
.|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 378888753
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.85 E-value=5.1e+02 Score=27.56 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=25.1
Q ss_pred CCCCCEEEEEeCCCCEEEEEECCCCcEE
Q 022387 267 TQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (298)
Q Consensus 267 spdg~~lAt~S~Dgt~IrIWd~~tg~~l 294 (298)
+++|..++++..||. +..||...|+.+
T Consensus 243 ~~~~~~~v~~h~Dgs-~~fWd~s~g~~~ 269 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGS-YAFWDVSSGKLQ 269 (993)
T ss_pred ccCCceEEEEEecCC-EEeeecCCCcee
Confidence 889999999999999 999999999763
No 474
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=37.66 E-value=69 Score=22.81 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCEEEEEcC--CeEEEEEcC
Q 022387 87 TLLHISFNQDHGCFAAGTD--HGFRIYNCD 114 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs~--~gi~vw~~~ 114 (298)
.-+.|.++||+++|.+++- ..|.+|..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4567899999998887764 557788754
No 475
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=37.07 E-value=1.7e+02 Score=28.35 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=50.1
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCC------CCeEEEEecCCCceEEEEEcC-CcceE--eeccc--cccee
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV------GSLVLVCPGLQKGQVRVEHYA-SKRTK--FIMAH--DSRIA 262 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~------d~~~la~sGs~dg~v~i~~~~-~~~~~--~~~~H--~~~V~ 262 (298)
+.++-.|+..++.+.+...+... ++.+.+.. +.+.|+ .-|..+..+|+-.- ..++. ..+.. +...+
T Consensus 490 ~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs 566 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS 566 (776)
T ss_pred ccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcccccccc
Confidence 35666677788888887776553 44444432 224444 13566666774332 22222 22211 11223
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 263 CFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 263 ~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
|..-. ..-|+|.||..|- ||+||-
T Consensus 567 s~~tT-esGyIa~as~kGD-irLyDR 590 (776)
T COG5167 567 SGMTT-ESGYIAAASRKGD-IRLYDR 590 (776)
T ss_pred ccccc-cCceEEEecCCCc-eeeehh
Confidence 33222 3458999999999 999993
No 476
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=36.90 E-value=2.2e+02 Score=24.25 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.7
Q ss_pred ccceeEEEECCCCCEEEEE
Q 022387 258 DSRIACFALTQDGQLLATS 276 (298)
Q Consensus 258 ~~~V~~l~fspdg~~lAt~ 276 (298)
.+.|..|.|..++..+..+
T Consensus 192 ~g~V~~V~~~~~~~~l~l~ 210 (225)
T PRK06655 192 YANVQSVSLGANGGGLDLN 210 (225)
T ss_pred EEEEEEEEecCCCcEEEEc
Confidence 4679999998877776665
No 477
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=36.09 E-value=55 Score=32.40 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=55.2
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcce-----E-eeccc-----cccee
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----K-FIMAH-----DSRIA 262 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~-----~-~~~~H-----~~~V~ 262 (298)
+.+.+-|+.....+..|++|..++...+|...+ .+++++.-....|.+..+..... . .+..| ...|.
T Consensus 295 ~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsg--sllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviq 372 (788)
T KOG2109|consen 295 NLVIVKDFDSFADIRQFKAHKSPISALCFDQSG--SLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQ 372 (788)
T ss_pred ceEEeecccchhhhhheeeecCcccccccccCc--eEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHH
Confidence 346677787888888899998888777776554 66665333333444444322111 1 12222 23477
Q ss_pred EEEECCCCCEEEEEeCCCC
Q 022387 263 CFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 263 ~l~fspdg~~lAt~S~Dgt 281 (298)
.+||+....+.+.+|.+|+
T Consensus 373 dicfs~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 373 DICFSEVSTIRTAGSCEGE 391 (788)
T ss_pred HHhhhhhcceEeecccCCC
Confidence 8899999999999998885
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.47 E-value=1.2e+02 Score=26.95 Aligned_cols=54 Identities=6% Similarity=0.028 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCcceEee-cccccceeEEEECCCCCEEEEEe------CCCCEEEEEECCCC
Q 022387 237 QKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSS------TKGTLVRIFNTLDG 291 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~~-~~H~~~V~~l~fspdg~~lAt~S------~Dgt~IrIWd~~tg 291 (298)
.-..|++||....+=..+ .+-.+.|++|.|..+.+++|.|. .... +-.||+.+.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~-la~yd~~~~ 74 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSN-LATYDFKNQ 74 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCcee-EEEEecCCC
Confidence 345788888877653322 23457899999987778888885 3344 778887765
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=34.04 E-value=5.5e+02 Score=26.57 Aligned_cols=97 Identities=7% Similarity=0.016 Sum_probs=48.4
Q ss_pred EEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEe----ecCCceEEEEEe--CCeEEEEECCeEEEEEcCCC
Q 022387 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL----SFRSEVRSVKLR--RDRIIVVLEQKIFVYNFADL 204 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~----~~~~~v~~v~~~--~~~l~v~~~~~I~iwd~~~~ 204 (298)
..+.|.+.+..+++.+... -...-.|..+.. +|-...++ .....+..++|+ ..-++++..+.|++|-..+.
T Consensus 250 ~~LSWkpqgS~~ati~td~--~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDG--CSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCceeeeeccCC--CCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce
Confidence 3456777788888776221 112234555543 22222222 223345555554 34566677889999987654
Q ss_pred eEEEEEeccC--CCcceEEEEeCCCCeEEE
Q 022387 205 KLLHQIETIA--NPKGLCAVSQGVGSLVLV 232 (298)
Q Consensus 205 ~~i~~~~~~~--~~~~~~~~s~~~d~~~la 232 (298)
.= -++... ..+..+.+++..++.++.
T Consensus 327 hW--YLK~e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 327 HW--YLKVERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EE--EEEEeecCCCcceeeeccccCcEEEE
Confidence 32 222111 123344555555555554
No 480
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=33.88 E-value=46 Score=24.91 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=16.3
Q ss_pred CCCEEEEEECCCCcEEEec
Q 022387 279 KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 279 Dgt~IrIWd~~tg~~l~~~ 297 (298)
.+..|.|||+.+|.++.+|
T Consensus 39 ~~E~V~I~Nv~NG~Rf~TY 57 (111)
T cd06919 39 PYEKVLVVNVNNGARFETY 57 (111)
T ss_pred CCCEEEEEECCCCcEEEEE
Confidence 4446999999999999987
No 481
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=33.05 E-value=45 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=23.5
Q ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Q 022387 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (298)
Q Consensus 263 ~l~fspdg~~lAt~S~Dgt~IrIWd~~tg~~ 293 (298)
||...-.|..||.||.+|. .+|-+.+.++
T Consensus 2 ~v~~~~~g~~lAiGG~~g~--~~Wfvtt~~v 30 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGG--CLWFVTTNKV 30 (86)
T ss_pred eEEEecCCeEEEEccccCC--eEEEEECcHH
Confidence 6777788999999999976 4898877654
No 482
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=32.93 E-value=1.2e+02 Score=31.42 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=39.2
Q ss_pred CCceEEEEEcCCcceEee-cccccceeEEEECCCCCEEEE-EeCCC---C-EEEEEECCC
Q 022387 237 QKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLAT-SSTKG---T-LVRIFNTLD 290 (298)
Q Consensus 237 ~dg~v~i~~~~~~~~~~~-~~H~~~V~~l~fspdg~~lAt-~S~Dg---t-~IrIWd~~t 290 (298)
..|.+.+-|........+ ..+..+|.+-+|||||++||= .|..+ . .|.|=|+.+
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 345777777776655555 567889999999999999997 56655 2 266667664
No 483
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=32.54 E-value=2.7e+02 Score=22.55 Aligned_cols=51 Identities=29% Similarity=0.374 Sum_probs=27.5
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCccccCccchhhhhccccccccCCCC
Q 022387 2 AALSAYSSPWPEPTPDPNPNPNPNSNTSCGVSSEDQTDQLQSLESFSSMPQD 53 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 53 (298)
|++-++|.|=|.-.|+-..|-||-..+ .|+=-.||-..+.+.++.+.++..
T Consensus 6 aa~v~~s~~~~~hA~~dst~inPLakL-~GvW~~dkGvDVaP~~e~s~v~~G 56 (203)
T COG5514 6 AAQVIFSEPSPNHAPDDSTNINPLAKL-AGVWQSDKGVDVAPKEEGSNVGNG 56 (203)
T ss_pred hhHHHhcCCCcccCCCcccccchhHHh-hceeecccccccCcccccCCCCCC
Confidence 556667777666556655555554433 345555554444444444445444
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=32.17 E-value=4.6e+02 Score=25.07 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEe--ecccc-cceeEEEECCCC
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHD-SRIACFALTQDG 270 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~--~~~H~-~~V~~l~fspdg 270 (298)
....++|.. +.....+......... |..-+++.+++.++ +.+...|+..+.+.. +.... ..=..+.+-|+|
T Consensus 128 ~~~~~iD~~-G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~---~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 128 SYTYLIDNN-GDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG---NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEETT-S-EEEEE-GGGT--SS--EEE-TTS-EEEEEB---TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred ceEEEECCC-ccEEEEEccCccccce--eeEcCCCCEEEecC---CceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence 466666643 5555555432222111 44445667776433 566666766554432 22210 112455677999
Q ss_pred CEEEEEe--------------CCCCEEEEEECCCCcEEEec
Q 022387 271 QLLATSS--------------TKGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 271 ~~lAt~S--------------~Dgt~IrIWd~~tg~~l~~~ 297 (298)
++|+.+. .| . |-..| .+|+.+.++
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D-~-Ivevd-~tG~vv~~w 239 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVED-V-IVEVD-PTGEVVWEW 239 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S--E-EEEE--TTS-EEEEE
T ss_pred CEEEEEeecccccCCCCccEecC-E-EEEEC-CCCCEEEEE
Confidence 9999888 33 2 56677 888887764
No 485
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=31.83 E-value=1.9e+02 Score=30.09 Aligned_cols=96 Identities=11% Similarity=0.296 Sum_probs=51.5
Q ss_pred eEEEEECCeEEEEEcCCCeEEEEEeccCCCcc-eEEEEeCCC-------CeEEEEecCCCceEEE----EEcCCcceEee
Q 022387 187 RIIVVLEQKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVG-------SLVLVCPGLQKGQVRV----EHYASKRTKFI 254 (298)
Q Consensus 187 ~l~v~~~~~I~iwd~~~~~~i~~~~~~~~~~~-~~~~s~~~d-------~~~la~sGs~dg~v~i----~~~~~~~~~~~ 254 (298)
+..+..++.+.+||+.+....+.+....+.+. +.-+.|.++ +.+++ .....+.+ -|.++..+..+
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~v---AT~~e~~ilgvs~d~~T~Els~f 171 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFV---ATEKEVMILGVSKDTKTGELSLF 171 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhh---hhhheeeEEEEEeccccceeEEE
Confidence 44455678999999986655444443222222 222333331 12222 12223333 22223333322
Q ss_pred cc------cccceeEEEECCCCCEEEEEeCCCCEEEEEEC
Q 022387 255 MA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (298)
Q Consensus 255 ~~------H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~ 288 (298)
.- ..-.|+|+.-+.+|+.|.+|-.| ..||.+
T Consensus 172 nTgl~vsvqGinV~civs~e~GrIFf~g~~d---~nvyEl 208 (1263)
T COG5308 172 NTGLVVSVQGINVRCIVSEEDGRIFFGGEND---PNVYEL 208 (1263)
T ss_pred ecceEEeccCceeEEEEeccCCcEEEecCCC---CCeEEE
Confidence 22 23468999988999999999777 457764
No 486
>KOG2883 consensus NIPSNAP1 protein [Function unknown]
Probab=31.58 E-value=25 Score=29.62 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=13.5
Q ss_pred ccccCCCCCCCCCCCCC
Q 022387 5 SAYSSPWPEPTPDPNPN 21 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (298)
--|-|+|+||.+.|.+|
T Consensus 136 ll~fs~W~epe~r~g~n 152 (253)
T KOG2883|consen 136 LLYFSYWSEPEKRPGEN 152 (253)
T ss_pred eeeeeccCCcCCCCCCC
Confidence 45789999999887665
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=31.31 E-value=4.7e+02 Score=24.93 Aligned_cols=104 Identities=6% Similarity=-0.048 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCC---eEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEE
Q 022387 95 QDHGCFAAGTDH---GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE 171 (298)
Q Consensus 95 ~dg~~lasgs~~---gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~ 171 (298)
-+|.+.+.|+.+ .+..|+..+.++.....+. ...........++. +.+.||... ....+..||.++++....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~-~~r~~~~~~~~~g~-IYviGG~~~---~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL-KPRCNPAVASINNV-IYVIGGHSE---TDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCC-CCCcccEEEEECCE-EEEecCcCC---CCccEEEEeCCCCEEEeC
Confidence 467777777752 3557776655543333321 11112222233443 444444321 235688899887654332
Q ss_pred --eecCCceEEEEEeCCeEEEEECCeEEEEEcCCC
Q 022387 172 --LSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204 (298)
Q Consensus 172 --~~~~~~v~~v~~~~~~l~v~~~~~I~iwd~~~~ 204 (298)
+.....-.++....+.+.+.+ |.+.+||..+.
T Consensus 392 ~~m~~~r~~~~~~~~~~~IYv~G-G~~e~ydp~~~ 425 (480)
T PHA02790 392 PSTYYPHYKSCALVFGRRLFLVG-RNAEFYCESSN 425 (480)
T ss_pred CCCCCccccceEEEECCEEEEEC-CceEEecCCCC
Confidence 111111123333445555543 45677887543
No 488
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=31.26 E-value=4.6e+02 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.7
Q ss_pred eEEEECCCCCEEEEEeCCC
Q 022387 262 ACFALTQDGQLLATSSTKG 280 (298)
Q Consensus 262 ~~l~fspdg~~lAt~S~Dg 280 (298)
..+.|-|+|..+||-+.||
T Consensus 250 ~~LSWkpqgS~~ati~td~ 268 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDG 268 (1243)
T ss_pred hccccccCCceeeeeccCC
Confidence 3478999999999987665
No 489
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=30.91 E-value=5.7e+02 Score=25.76 Aligned_cols=196 Identities=10% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCCCeEEEEEcCCC---CEEEEE-cC-CeEEEEEcCCC-------------ceEEEEeeecCCceEEEEEecCCCEEEEE
Q 022387 84 PPPTLLHISFNQDH---GCFAAG-TD-HGFRIYNCDPF-------------REIFRRDFERGGGIGVVEMLFRCNILALV 145 (298)
Q Consensus 84 ~~~~V~~v~fs~dg---~~lasg-s~-~gi~vw~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
....|.||..-... ++.++| .+ +..++-.+... ...+...+ .+.+..+.+..++..++++
T Consensus 70 pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl--~~kvv~Ik~~~~~~~I~vv 147 (670)
T PF10395_consen 70 PTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL--DDKVVGIKFSSDGKIIYVV 147 (670)
T ss_pred cCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc--ccceEEEEEecCCCEEEEE
Confidence 34578888876432 355566 34 43443333222 12233343 4555555666556666555
Q ss_pred eCCCCCCCCCCeEEEEeCCCC--cEEEEeecCC--------ceEEEE--EeCCeEEEEEC-----CeEEEEEc-CCCeEE
Q 022387 146 GGGPDPQYPLNKVMIWDDHQS--RCIGELSFRS--------EVRSVK--LRRDRIIVVLE-----QKIFVYNF-ADLKLL 207 (298)
Q Consensus 146 ~~~~~~~~~d~~v~iWD~~~~--~~~~~~~~~~--------~v~~v~--~~~~~l~v~~~-----~~I~iwd~-~~~~~i 207 (298)
- ..|.|.+||...+ +.+..+.... -|.... ...+++++... -..+++.+ .+...+
T Consensus 148 l-------~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~ 220 (670)
T PF10395_consen 148 L-------ENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSI 220 (670)
T ss_pred E-------cCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcce
Confidence 5 4588999999322 1111222211 111111 11345554433 26778887 223333
Q ss_pred EEEe---ccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcc-eE--eec----cc-ccceeEEEECCCCCEEEEE
Q 022387 208 HQIE---TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TK--FIM----AH-DSRIACFALTQDGQLLATS 276 (298)
Q Consensus 208 ~~~~---~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~-~~--~~~----~H-~~~V~~l~fspdg~~lAt~ 276 (298)
..+. .+......+.|+.. +|.+... .++.|.+|.+..-+ .+ .+. .- ...|.=.+.+++ +.|.|.
T Consensus 221 ~El~s~~~e~~~~~~s~f~Y~-~G~LY~l---~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~n-RvLLs~ 295 (670)
T PF10395_consen 221 FELSSTILENFGLEDSKFCYQ-FGKLYQL---SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPN-RVLLSV 295 (670)
T ss_pred EEeehheeccCCcccceEEEe-CCEEEEE---eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCC-eEEEEc
Confidence 3433 22222233444444 3455553 66788888874322 12 222 11 223333344444 344443
Q ss_pred eCCCCEEEEEECCCCcEEEe
Q 022387 277 STKGTLVRIFNTLDGTLLQE 296 (298)
Q Consensus 277 S~Dgt~IrIWd~~tg~~l~~ 296 (298)
+.+ |.+.|+.-..++.+
T Consensus 296 --~nk-IyLld~~~~siLse 312 (670)
T PF10395_consen 296 --NNK-IYLLDLKFESILSE 312 (670)
T ss_pred --CCE-EEEEeehhhhhhhh
Confidence 555 99999875555443
No 490
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=30.75 E-value=89 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.1
Q ss_pred EcCCCCEEEEEcCCe-EEEEEc
Q 022387 93 FNQDHGCFAAGTDHG-FRIYNC 113 (298)
Q Consensus 93 fs~dg~~lasgs~~g-i~vw~~ 113 (298)
.||||+.||.+..+| +++|-+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eCCCCcEEEEeecCCccceeee
Confidence 699999999998877 557754
No 491
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=30.74 E-value=3.5e+02 Score=23.26 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCEEEEEc--CCeEEEEEcCCCceEEEEeeecCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEE-eC
Q 022387 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW-DD 163 (298)
Q Consensus 87 ~V~~v~fs~dg~~lasgs--~~gi~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW-D~ 163 (298)
.+.+.++++||+.+|.-. +++-.||-............ ...+..-.|..++...+...+ +...+++ +.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~-------~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDG-------SGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcC-------CCceEEEEec
Confidence 688899999999887655 55545554444332222211 233333344455444444332 2445555 33
Q ss_pred CCCcE-EEEeecC---CceEEEEEeCC--eEEEEE----CCeEEEEEcC---CCeEEEEEe----cc-CCCcceEEEEeC
Q 022387 164 HQSRC-IGELSFR---SEVRSVKLRRD--RIIVVL----EQKIFVYNFA---DLKLLHQIE----TI-ANPKGLCAVSQG 225 (298)
Q Consensus 164 ~~~~~-~~~~~~~---~~v~~v~~~~~--~l~v~~----~~~I~iwd~~---~~~~i~~~~----~~-~~~~~~~~~s~~ 225 (298)
..+.. ...+... ..|..+.++++ ++++.. ++.|.+--+. ++ ....+. .. .....+.++.+.
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEecccccCcceeeeec
Confidence 33322 1222222 27889999876 556555 4677777662 22 011111 11 112345577787
Q ss_pred CCCeEEEEecCCCceEEE-EEcCCcceEeecccccceeEEEECCCCCEEEEEeCCCC
Q 022387 226 VGSLVLVCPGLQKGQVRV-EHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 226 ~d~~~la~sGs~dg~v~i-~~~~~~~~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
++..+++.....++.+.. ..........+..-...+.-++...+...++.. .++.
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~ 230 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGG 230 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCc
Confidence 777877765555654444 333333333332223333444444433333333 3554
No 492
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.41 E-value=1.7e+02 Score=29.57 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=55.3
Q ss_pred CeEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCCcceEe----ecccccceeEEEECCC
Q 022387 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----IMAHDSRIACFALTQD 269 (298)
Q Consensus 194 ~~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~~~~~~----~~~H~~~V~~l~fspd 269 (298)
-.|+||++. ++++.++.- .+ ...+.+.++.+..+|++ ..+|++.++++-...... +......|..+.|..+
T Consensus 64 ~~I~If~~s-G~lL~~~~w-~~-~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILW-KH-GELIGMGWSDDEELICV--QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred eeEEEEecc-ccchHHHHh-cC-CCeeeecccCCceEEEE--eccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 468888875 333333321 11 25678888888888886 899999999876543221 2333445666666667
Q ss_pred CCEEEEEeCCCCEEEEEECCC
Q 022387 270 GQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 270 g~~lAt~S~Dgt~IrIWd~~t 290 (298)
|-.+.+.+ |..+.+.+...
T Consensus 139 GVavlt~~--g~v~~i~~~~~ 157 (829)
T KOG2280|consen 139 GVAVLTVS--GQVILINGVEE 157 (829)
T ss_pred ceEEEecC--CcEEEEcCCCc
Confidence 76666664 33466665554
No 493
>PRK10115 protease 2; Provisional
Probab=30.35 E-value=5.8e+02 Score=25.72 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=90.6
Q ss_pred EEEEEcCCCCEEEEEc-CC------eEEEEEcCCC--ceEEEEeeecCCceEEEEEec-CCCEEEEEeCCCCCCCCCCeE
Q 022387 89 LHISFNQDHGCFAAGT-DH------GFRIYNCDPF--REIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKV 158 (298)
Q Consensus 89 ~~v~fs~dg~~lasgs-~~------gi~vw~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v 158 (298)
..++|.+|++.|+-.. ++ .+..+++.+. +.....+- ..+......+.. +...+++.+.+. .++.+
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~~~~----~~~~~ 249 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHLASA----TTSEV 249 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEEECC----ccccE
Confidence 4699999998665443 22 2445677665 22222221 123333222322 555555444332 45778
Q ss_pred EEEeCC--CCcEEEEeecC-CceEEEEEeCCeEEEEEC---C--eEEEEEcCCCeEEEEEeccCCCcceEEEEeCCCCeE
Q 022387 159 MIWDDH--QSRCIGELSFR-SEVRSVKLRRDRIIVVLE---Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (298)
Q Consensus 159 ~iWD~~--~~~~~~~~~~~-~~v~~v~~~~~~l~v~~~---~--~I~iwd~~~~~~i~~~~~~~~~~~~~~~s~~~d~~~ 230 (298)
.+++.. .+.....+... .....+....+.+.+.++ . .|...++.+......+..+.....+-.+....+ .
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--~ 327 (686)
T PRK10115 250 LLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD--W 327 (686)
T ss_pred EEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC--E
Confidence 999853 33322222222 122233322355555553 2 444445542222233444322222333333332 4
Q ss_pred EEEecCCCceEEEEEcC--CcceEeec-ccccceeEEEEC--CC-CCEEEEEeC---CCCEEEEEECCCCc
Q 022387 231 LVCPGLQKGQVRVEHYA--SKRTKFIM-AHDSRIACFALT--QD-GQLLATSST---KGTLVRIFNTLDGT 292 (298)
Q Consensus 231 la~sGs~dg~v~i~~~~--~~~~~~~~-~H~~~V~~l~fs--pd-g~~lAt~S~---Dgt~IrIWd~~tg~ 292 (298)
|+++...+|.-+++.+. .+....+. .....+..+.++ ++ +.++++.+. -+. +..+|+.+++
T Consensus 328 l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~-~y~~d~~~~~ 397 (686)
T PRK10115 328 LVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDT-LFELDMDTGE 397 (686)
T ss_pred EEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCE-EEEEECCCCc
Confidence 44456778877775443 33343333 222234444455 34 345555543 345 7777887764
No 494
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=29.99 E-value=4.8e+02 Score=24.66 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCeEEEEeCCCCcEEEEeec---C--CceEEEEEeC--CeEEEE--------ECCeEEEEEcCCCeEEEEEeccCCCcce
Q 022387 155 LNKVMIWDDHQSRCIGELSF---R--SEVRSVKLRR--DRIIVV--------LEQKIFVYNFADLKLLHQIETIANPKGL 219 (298)
Q Consensus 155 d~~v~iWD~~~~~~~~~~~~---~--~~v~~v~~~~--~~l~v~--------~~~~I~iwd~~~~~~i~~~~~~~~~~~~ 219 (298)
-+.|-+|+..+++....+.. . .....+.|.+ ..++.. .++.|++||.++..
T Consensus 244 ~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n-------------- 309 (465)
T KOG2714|consen 244 VGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN-------------- 309 (465)
T ss_pred cccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC--------------
Confidence 46799999988744322221 1 1222233332 222222 23689999987654
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCC-----cc--eEeecccccceeEEEECCCCCEEEEEeCCCCEEEEEECCC
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~-----~~--~~~~~~H~~~V~~l~fspdg~~lAt~S~Dgt~IrIWd~~t 290 (298)
+..++ ..+++ |+..|.+++.+.-. .. ..++..|.++.. |+.-..++.-+|+|....
T Consensus 310 ~~~~W----~~i~~-gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~----------~idv~~~~~~~~~~~~tr 372 (465)
T KOG2714|consen 310 TSGNW----IEIAY-GTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG----------LIDVCSDGGHVRVWNSTR 372 (465)
T ss_pred ccceE----EEecC-CccccceEeeeccccccCCCCeEEEEEEecCCCcc----------eeehhhhCCcceEEeecc
Confidence 01222 34443 66667777744321 11 225666665522 344333333377777653
No 495
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=29.92 E-value=60 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=22.1
Q ss_pred EEEEcCCCCEEEEEcCCeEEEEEcCCCc
Q 022387 90 HISFNQDHGCFAAGTDHGFRIYNCDPFR 117 (298)
Q Consensus 90 ~v~fs~dg~~lasgs~~gi~vw~~~~~~ 117 (298)
++...-.|..||.|+..|=++|-+.+..
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~ 29 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNK 29 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcH
Confidence 5677788999999998765789876654
No 496
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=29.69 E-value=58 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.3
Q ss_pred CCCEEEEEECCCCcEEEec
Q 022387 279 KGTLVRIFNTLDGTLLQEG 297 (298)
Q Consensus 279 Dgt~IrIWd~~tg~~l~~~ 297 (298)
....|.|||+.+|.++.+|
T Consensus 40 p~E~V~V~Nv~NG~Rf~TY 58 (126)
T PRK05449 40 ENEKVQIVNVNNGARFETY 58 (126)
T ss_pred CCCEEEEEECCCCcEEEEE
Confidence 3446999999999999988
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=28.89 E-value=4.8e+02 Score=24.33 Aligned_cols=104 Identities=9% Similarity=-0.003 Sum_probs=56.3
Q ss_pred CCceEEEEEeCC-eEEEEECCeEEEEEcCCCe-----EEEEEeccCCCcceEEEEeCCCCeEEEEecCCCceEEEEEcCC
Q 022387 175 RSEVRSVKLRRD-RIIVVLEQKIFVYNFADLK-----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (298)
Q Consensus 175 ~~~v~~v~~~~~-~l~v~~~~~I~iwd~~~~~-----~i~~~~~~~~~~~~~~~s~~~d~~~la~sGs~dg~v~i~~~~~ 248 (298)
...+.++.+..+ .+++++.+.-.++....++ .+..+..........++.+..++..+++ ..+|.+....-..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G~~G~v~~s~D~G 357 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA--GGSGILLRSTDGG 357 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE--ECCCcEEEeCCCC
Confidence 345677777543 4555554333444433333 2222222212233555656666677764 5677776644333
Q ss_pred cceEee---cccccceeEEEECCCCCEEEEEeCCCC
Q 022387 249 KRTKFI---MAHDSRIACFALTQDGQLLATSSTKGT 281 (298)
Q Consensus 249 ~~~~~~---~~H~~~V~~l~fspdg~~lAt~S~Dgt 281 (298)
+.-... ..-....+.|.|.++++.+|+|. +|.
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~ 392 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGV 392 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEeC-CcE
Confidence 321221 22245688999999889898884 777
No 498
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=28.85 E-value=2.1e+02 Score=22.31 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=26.7
Q ss_pred EEEEeCCCCeEEEEecCCCceEEEEEcCCc--ceEeecc--cccceeEEEECCC
Q 022387 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMA--HDSRIACFALTQD 269 (298)
Q Consensus 220 ~~~s~~~d~~~la~sGs~dg~v~i~~~~~~--~~~~~~~--H~~~V~~l~fspd 269 (298)
+.-..|+|..+|...|-.|+.|+++.+..+ .+..+.. +..+...++|-|.
T Consensus 14 L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 14 LMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred eEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 333456666777767999999999998766 3433333 4556788888874
No 499
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.71 E-value=5.3e+02 Score=24.77 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=55.9
Q ss_pred cCCceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcE----EEEeecCC-ceEEEEEeC-CeEEEEECCeEEEE
Q 022387 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC----IGELSFRS-EVRSVKLRR-DRIIVVLEQKIFVY 199 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~----~~~~~~~~-~v~~v~~~~-~~l~v~~~~~I~iw 199 (298)
.++.+..+.++.+...+|+-- .+++|.+.+..-.+. ..+.+... .|....|.. ..++...+..|-+|
T Consensus 65 d~G~I~SIkFSlDnkilAVQR-------~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQR-------TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFY 137 (657)
T ss_pred CCCceeEEEeccCcceEEEEe-------cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEE
Confidence 367788888888888777765 679999999844332 22233333 477777754 45666677778888
Q ss_pred EcCC-CeEEEEEeccCCCcceEEEEeCC
Q 022387 200 NFAD-LKLLHQIETIANPKGLCAVSQGV 226 (298)
Q Consensus 200 d~~~-~~~i~~~~~~~~~~~~~~~s~~~ 226 (298)
-... ...++..+.+...+.-..++++.
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEcccc
Confidence 7632 22233334443334444445443
No 500
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=28.36 E-value=3.8e+02 Score=22.99 Aligned_cols=145 Identities=12% Similarity=-0.022 Sum_probs=71.5
Q ss_pred ceEEEEEecCCCEEEEEeCCCCCCCCCCeEEEEeCCCCcEEEEeecCCceEEEEEeCCe-EEEEE--CCeEEEEE-cCCC
Q 022387 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL--EQKIFVYN-FADL 204 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWD~~~~~~~~~~~~~~~v~~v~~~~~~-l~v~~--~~~I~iwd-~~~~ 204 (298)
.+....++.++..++.+..++ ....+.++.... ....+.....+..-.|+++. +.+.. +...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~----~~~~L~~~~~~~--~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGD----GGRSLYVGPAGG--PVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcC----CCCEEEEEcCCC--cceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 455666777777777766221 124455554433 22222222345555566543 33332 23445542 2222
Q ss_pred eE-EEEEeccCC--CcceEEEEeCCCCeEEEEe--cCCCceEEEEEcC---Cc-c--e----EeecccccceeEEEECCC
Q 022387 205 KL-LHQIETIAN--PKGLCAVSQGVGSLVLVCP--GLQKGQVRVEHYA---SK-R--T----KFIMAHDSRIACFALTQD 269 (298)
Q Consensus 205 ~~-i~~~~~~~~--~~~~~~~s~~~d~~~la~s--Gs~dg~v~i~~~~---~~-~--~----~~~~~H~~~V~~l~fspd 269 (298)
+. ...+..... .+..+.+|+|+ ..+|+. ...++.|.+-.+. .. + + .........++.++|.++
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG--~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDG--TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred cceeEEecccccCCceEEEEECCCC--cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 22 112222111 34445555554 555542 3345777773321 11 1 1 122233568999999999
Q ss_pred CCEEEEEeCCCC
Q 022387 270 GQLLATSSTKGT 281 (298)
Q Consensus 270 g~~lAt~S~Dgt 281 (298)
+.+++.+...+.
T Consensus 177 ~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 STLVVLGRSAGG 188 (253)
T ss_pred CEEEEEeCCCCC
Confidence 998888765544
Done!