Your job contains 1 sequence.
>022388
MALEQTLVSTRNLVFSVSVRRKSPNNIQIPSLSPSQNPLTKQAWFISHRQPLKLRLRCSV
DCKDHQYSSQVSYPKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS
ATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNF
VERSSPSMSSYDSESNFMTAGKKYANSSGNNMCSTEELWQAFFASPNEWWDNRKNKKNPK
YPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRMGSLHDEDSRTHVGFMSADELMSF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022388
(298 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015353 - symbol:OSB1 "Organellar Single-stran... 265 6.1e-23 1
TAIR|locus:2015721 - symbol:OSB4 "organellar single-stran... 168 6.4e-23 2
TAIR|locus:2119767 - symbol:PTAC9 "plastid transcriptiona... 242 2.1e-20 1
TAIR|locus:505006672 - symbol:OSB3 "organellar single-str... 218 2.6e-17 1
TIGR_CMR|GSU_2151 - symbol:GSU_2151 "single-strand bindin... 115 1.7e-06 1
TIGR_CMR|GSU_3117 - symbol:GSU_3117 "single-strand bindin... 107 1.3e-05 1
TIGR_CMR|DET_1045 - symbol:DET_1045 "single-strand bindin... 105 2.2e-05 1
UNIPROTKB|Q9KUW2 - symbol:ssb "Single-stranded DNA-bindin... 116 2.5e-05 1
TIGR_CMR|VC_0397 - symbol:VC_0397 "single-strand binding ... 116 2.5e-05 1
UNIPROTKB|P0AGE0 - symbol:ssb "ssDNA-binding protein" spe... 115 3.7e-05 1
>TAIR|locus:2015353 [details] [associations]
symbol:OSB1 "Organellar Single-stranded" species:3702
"Arabidopsis thaliana" [GO:0003697 "single-stranded DNA binding"
evidence=IEA;IDA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IMP] [GO:0048046
"apoplast" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0048046 GO:GO:0003697
GO:GO:0000002 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC012463
EMBL:AC007519 GO:GO:0045910 EMBL:BT005269 EMBL:AK119114
IPI:IPI00522831 RefSeq:NP_175203.2 UniGene:At.38566
ProteinModelPortal:Q9SX99 STRING:Q9SX99 EnsemblPlants:AT1G47720.1
GeneID:841183 KEGG:ath:AT1G47720 TAIR:At1g47720 eggNOG:NOG311682
HOGENOM:HOG000092997 InParanoid:Q9SX99 OMA:SAVYHHA PhylomeDB:Q9SX99
ProtClustDB:CLSN2918339 Genevestigator:Q9SX99 Uniprot:Q9SX99
Length = 261
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 67/214 (31%), Positives = 98/214 (45%)
Query: 73 YPKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK--SATQTSWINLT 130
+ KP L N+V L+G V I+ + + +T L V+ + ++ I+L
Sbjct: 42 FKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLR 101
Query: 131 FWDELAHVASQHVEKGQQIYISGRLVSDVVESGD--GXXXXXXXXXXXXLNFVERXXXXX 188
WD +A H++ I +SGRL S S D +N+V
Sbjct: 102 MWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHV 161
Query: 189 XXXXXXXNFMTAGKKYANSSGNNMCSTEELWQAFFASPNEWWDNRKNKKNPKYPDFKHKD 248
N T + S + LWQ FF++P +WWDNR+NKKNPK PDFKHKD
Sbjct: 162 LDSQISKNPKTKTEDDIEESKKDEIY---LWQVFFSNPYDWWDNRRNKKNPKQPDFKHKD 218
Query: 249 TGEALWVEGRYNPGWVKSQLAILDTRMGSLHDED 282
TGEALW+ P W+ +L + D + +DE+
Sbjct: 219 TGEALWLCSDL-PDWITRRLELFDQK-NRFYDEE 250
>TAIR|locus:2015721 [details] [associations]
symbol:OSB4 "organellar single-stranded DNA binding
protein 4" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR000424 PROSITE:PS50935 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC000107
HOGENOM:HOG000114724 ProtClustDB:CLSN2688130 EMBL:AY086580
IPI:IPI00528208 PIR:G86435 RefSeq:NP_564370.1 UniGene:At.40440
ProteinModelPortal:Q9FYJ2 SMR:Q9FYJ2 PaxDb:Q9FYJ2 PRIDE:Q9FYJ2
EnsemblPlants:AT1G31010.1 GeneID:839987 KEGG:ath:AT1G31010
TAIR:At1g31010 eggNOG:NOG304474 InParanoid:Q9FYJ2 OMA:VISHEPS
PhylomeDB:Q9FYJ2 Genevestigator:Q9FYJ2 Uniprot:Q9FYJ2
Length = 360
Score = 168 (64.2 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 43/148 (29%), Positives = 80/148 (54%)
Query: 31 SLSPSQNPLTKQAWFISHRQPLKL-------RLRCSVDCKDHQYSSQVSYPKPPEIPWDK 83
S+ PS N +++W +S +Q L R R + SS+ +P+P E+P+
Sbjct: 11 SIRPSLNSTARKSWVLSSQQFLSTSSTESSSRTRGGGGGNRAEKSSE-EWPRPMEVPYQP 69
Query: 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVR-----KSATQTS---WINLTFWDEL 135
++ N++ LIG V P++ GK A T ++ KS + +S WI + F +L
Sbjct: 70 KIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDL 129
Query: 136 AHVASQHVEKGQQIYISGRLVSDVVESG 163
AH A+ +++K +++I+G+++ DV++SG
Sbjct: 130 AHTANSYLKKNDRVHITGQILGDVIQSG 157
Score = 154 (59.3 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 216 EELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQL 268
EE W+ + N+WWDNR +K+ PK PDFKHK+TG LW+ +P WV +L
Sbjct: 293 EESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSD--SPSWVLEKL 343
Score = 146 (56.5 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 43/159 (27%), Positives = 69/159 (43%)
Query: 126 WINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGXXXXXXXXXXXX-------- 177
WI + F +LAH A+ +++K +++I+G+++ DV++SG
Sbjct: 120 WIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQV 179
Query: 178 ----LNFVERXXXXXXXXXXXXNFMTAGKKYANSSGNNMCSTEELWQAFFASPNEWWDNR 233
L+++E K A+ T LW PNEW D R
Sbjct: 180 MVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTN-LWFDLVDKPNEWCDYR 238
Query: 234 KNKKN----PKYPDFKHKDTGEALWVEGRYNPGWVKSQL 268
+ K+N PK+PDFK KD +ALW+ P + S+L
Sbjct: 239 EMKQNGSVNPKHPDFKKKDGSQALWLNNA--PTEILSEL 275
>TAIR|locus:2119767 [details] [associations]
symbol:PTAC9 "plastid transcriptionally active 9"
species:3702 "Arabidopsis thaliana" [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009295
"nucleoid" evidence=IDA] [GO:0009508 "plastid chromosome"
evidence=IDA] InterPro:IPR000424 PROSITE:PS50935 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021637 EMBL:AL161552
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AK118242 EMBL:BT026461 IPI:IPI00529933 IPI:IPI00656999
PIR:T04885 RefSeq:NP_001031674.1 RefSeq:NP_567593.1 UniGene:At.1899
ProteinModelPortal:Q8GXH3 SMR:Q8GXH3 STRING:Q8GXH3 PaxDb:Q8GXH3
PRIDE:Q8GXH3 EnsemblPlants:AT4G20010.1 GeneID:827746
KEGG:ath:AT4G20010 TAIR:At4g20010 eggNOG:NOG326142
HOGENOM:HOG000114724 InParanoid:O49428 OMA:PNEIAYE PhylomeDB:Q8GXH3
ProtClustDB:CLSN2688130 Genevestigator:Q8GXH3 GO:GO:0009508
Uniprot:Q8GXH3
Length = 371
Score = 242 (90.2 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 65/210 (30%), Positives = 102/210 (48%)
Query: 74 PKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS--WINLTF 131
P+P EI ++ E+ N V+LIG V P++ + GK A T ++ R SA+ +S WI + F
Sbjct: 86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQR-SASDSSGFWIPIIF 144
Query: 132 WDELAHVASQHVEKGQQIYISGRLVSDVVESGDGXXXXXXXXXXXXLNFVERXXXXXX-- 189
+LA A+++V K QI++SG+L D LNF++
Sbjct: 145 EGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSPSPSPF 204
Query: 190 XXXXXXNFMTAG-KKYANSSGNNMCSTE--ELWQAFFASPNEWWDNRKNKKN----PKYP 242
+G KK + ++ E + W +P EWWD+R+NK N P++P
Sbjct: 205 MVMSSSEKEESGIKKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVNGLVKPRHP 264
Query: 243 DFKHKDTGEALWVEGRYNPGWVKSQLAILD 272
DFK KD+ +LW+ P WV +L L+
Sbjct: 265 DFKSKDSSFSLWLNKA--PNWVLPKLEGLE 292
Score = 164 (62.8 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 216 EELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRM 275
EE W+ +P++WWDNR +K+N K PDFKHK+TGEALW+ +P WV +L + +
Sbjct: 309 EESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNE--SPTWVLPKLPPVKKKQ 366
Query: 276 GSL 278
S+
Sbjct: 367 ESI 369
>TAIR|locus:505006672 [details] [associations]
symbol:OSB3 "organellar single-stranded DNA binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000424 PROSITE:PS50935 GO:GO:0005739 EMBL:CP002688
GO:GO:0009507 GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 IPI:IPI00535730 RefSeq:NP_974885.1 UniGene:At.19937
ProteinModelPortal:F4KBP3 PRIDE:F4KBP3 EnsemblPlants:AT5G44785.2
GeneID:834508 KEGG:ath:AT5G44785 OMA:EISNWIN Uniprot:F4KBP3
Length = 442
Score = 218 (81.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 60/201 (29%), Positives = 92/201 (45%)
Query: 76 PPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDE 134
P +I + E++N ++LIG V P++ GK A T ++ R + ++ WI + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 135 LAHVASQHVEKGQQIYISGRLVSDVVESGDGXXXXXXXXXXXXLNFVERXXXXXXXXXXX 194
LA +A QHV+K +I++SG+L D LNFV+
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 195 XNFMTA-GKKYANSSGNNMCS--TEELWQAFFASPNEWWDNRKNKKN----PKYPDFKHK 247
+T+ KK A S + T W+ +P EW D+R NK N P +PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 248 DTGEALWVEGRYNPGWVKSQL 268
G +LW+ P W +L
Sbjct: 251 VGGLSLWLSTA--PDWALLKL 269
Score = 178 (67.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 209 GN-NMCSTEELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQ 267
GN EE+W+ +P++WWDNR +K+NPK PDFKHK+TGEALW+ +P W S+
Sbjct: 371 GNLKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGD--SPTWALSK 428
Query: 268 L 268
L
Sbjct: 429 L 429
Score = 162 (62.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 216 EELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQL 268
EE W+ +P++W DNR +K N KYPDFKHK+TGEALW+ +P WV S+L
Sbjct: 293 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKL 343
>TIGR_CMR|GSU_2151 [details] [associations]
symbol:GSU_2151 "single-strand binding protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
HSSP:P02339 RefSeq:NP_953200.1 ProteinModelPortal:Q74B90
GeneID:2687634 KEGG:gsu:GSU2151 PATRIC:22027155 OMA:DAICNIT
ProtClustDB:CLSK763171 BioCyc:GSUL243231:GH27-2137-MONOMER
Uniprot:Q74B90
Length = 139
Score = 115 (45.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV-----RKSA---TQTSWINLTFWDELAHV 138
N V LIG +G E ++ P G +A LA KS T+T W N+ + LA V
Sbjct: 5 NRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYARLAEV 64
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDG 165
A +++ KG+ +Y+ G+L + + DG
Sbjct: 65 AGEYLSKGKSVYLDGKLKTRKWQDRDG 91
>TIGR_CMR|GSU_3117 [details] [associations]
symbol:GSU_3117 "single-strand binding protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
RefSeq:NP_954158.1 HSSP:P02339 ProteinModelPortal:Q747Z8 SMR:Q747Z8
GeneID:2687451 KEGG:gsu:GSU3117 PATRIC:22029089 OMA:CAVANIN
ProtClustDB:CLSK829121 BioCyc:GSUL243231:GH27-3110-MONOMER
Uniprot:Q747Z8
Length = 146
Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E ++ P+G +A LA + +T W N+ W A +
Sbjct: 5 NKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRNGEFEEKTEWHNVVLWGRQAEI 64
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDG 165
A +++ KG+ ++I GRL + + DG
Sbjct: 65 AGEYLAKGRTVFIEGRLQTRKWQDKDG 91
>TIGR_CMR|DET_1045 [details] [associations]
symbol:DET_1045 "single-strand binding protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
GO:GO:0006260 GO:GO:0003697 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
HOGENOM:HOG000106484 RefSeq:YP_181761.1 ProteinModelPortal:Q3Z7N8
STRING:Q3Z7N8 GeneID:3229653 KEGG:det:DET1045 PATRIC:21609139
OMA:TAGANDF ProtClustDB:CLSK837124
BioCyc:DETH243164:GJNF-1046-MONOMER Uniprot:Q3Z7N8
Length = 135
Score = 105 (42.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/105 (25%), Positives = 47/105 (44%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVR--------KSATQTSWINLTFWDELAHV 138
N V +IG VG E ++ PSG + ++A + +T W + W++LA
Sbjct: 5 NKVMIIGNVGGEPEMRYTPSGHPVTSFKVATNWVYNTPEGERKQETEWFTVVAWNKLAEQ 64
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGXXXXXXXXXXXXLNFVER 183
+Q + KG+ +Y+ GRL + E D + F+E+
Sbjct: 65 CNQFLSKGRLVYVEGRLRTRSWEGQDSVKHYRTEVIASRVTFLEK 109
>UNIPROTKB|Q9KUW2 [details] [associations]
symbol:ssb "Single-stranded DNA-binding protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR000424 InterPro:IPR011344 Pfam:PF00436
PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 116 (45.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V LIG +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 7 NKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGSQVYIEGQL 84
>TIGR_CMR|VC_0397 [details] [associations]
symbol:VC_0397 "single-strand binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR000424 InterPro:IPR011344
Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG0629 PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111
ProtClustDB:PRK09010 OMA:NQRPPAQ EMBL:AF079406 PIR:B82326
RefSeq:NP_230051.1 ProteinModelPortal:Q9KUW2 SMR:Q9KUW2
DNASU:2614994 GeneID:2614994 KEGG:vch:VC0397 PATRIC:20079875
Uniprot:Q9KUW2
Length = 177
Score = 116 (45.9 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V LIG +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 7 NKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGSQVYIEGQL 84
>UNIPROTKB|P0AGE0 [details] [associations]
symbol:ssb "ssDNA-binding protein" species:83333
"Escherichia coli K-12" [GO:0000725 "recombinational repair"
evidence=TAS] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA;IDA] [GO:0009432 "SOS
response" evidence=TAS] UniProt:P0AGE0 InterPro:IPR000424
InterPro:IPR011344 Pfam:PF00436 PIRSF:PIRSF002070 PROSITE:PS50935
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006260 GO:GO:0006298 EMBL:U00006
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0009432 GO:GO:0000725 PDB:3SXU PDBsum:3SXU eggNOG:COG0629
PANTHER:PTHR10302 TIGRFAMs:TIGR00621 KO:K03111 HOGENOM:HOG000106483
EMBL:J01704 PIR:B65214 RefSeq:NP_418483.1 RefSeq:YP_492202.1
PDB:1EQQ PDB:1EYG PDB:1KAW PDB:1QVC PDB:1SRU PDB:3UF7 PDBsum:1EQQ
PDBsum:1EYG PDBsum:1KAW PDBsum:1QVC PDBsum:1SRU PDBsum:3UF7
ProteinModelPortal:P0AGE0 SMR:P0AGE0 DIP:DIP-35980N IntAct:P0AGE0
SWISS-2DPAGE:P0AGE0 PRIDE:P0AGE0 EnsemblBacteria:EBESCT00000004930
EnsemblBacteria:EBESCT00000004931 EnsemblBacteria:EBESCT00000004932
EnsemblBacteria:EBESCT00000018161 GeneID:12933677 GeneID:948570
KEGG:ecj:Y75_p3946 KEGG:eco:b4059 PATRIC:32123663 EchoBASE:EB0969
EcoGene:EG10976 OMA:SRPQQQS ProtClustDB:PRK09010
BioCyc:EcoCyc:EG10976-MONOMER BioCyc:ECOL316407:JW4020-MONOMER
EvolutionaryTrace:P0AGE0 Genevestigator:P0AGE0
Length = 178
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS----AT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA +S AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VAS+++ KG Q+YI G+L
Sbjct: 67 VASEYLRKGSQVYIEGQL 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 298 274 0.00078 115 3 11 22 0.38 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 624 (66 KB)
Total size of DFA: 242 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.07u 0.11s 21.18t Elapsed: 00:00:01
Total cpu time: 21.07u 0.11s 21.18t Elapsed: 00:00:01
Start: Tue May 21 03:18:14 2013 End: Tue May 21 03:18:15 2013