BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022388
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1
SV=1
Length = 261
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 12/218 (5%)
Query: 73 YPKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK--SATQTSWINLT 130
+ KP L N+V L+G V I+ + + +T L V+ + ++ I+L
Sbjct: 42 FKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLR 101
Query: 131 FWDELAHVASQHVEKGQQIYISGRLVSDVVESGD--GQQQTYYKVVVQQLNFVERSSPSM 188
WD +A H++ I +SGRL S S D Y+V V ++N+V ++P
Sbjct: 102 MWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYV--AAPPS 159
Query: 189 SSYDSESNFMTAGKKYANSSGNNMCSTEE--LWQAFFASPNEWWDNRKNKKNPKYPDFKH 246
DS+ ++ K +E LWQ FF++P +WWDNR+NKKNPK PDFKH
Sbjct: 160 HVLDSQ---ISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKH 216
Query: 247 KDTGEALWVEGRYNPGWVKSQLAILDTRMGSLHDEDSR 284
KDTGEALW+ P W+ +L + D + +E +R
Sbjct: 217 KDTGEALWLCSDL-PDWITRRLELFDQKNRFYDEEKTR 253
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
SV=2
Length = 371
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 18/218 (8%)
Query: 68 SSQVSYPKPPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-W 126
+++ P+P EI ++ E+ N V+LIG V P++ + GK A T ++ R ++ + W
Sbjct: 80 TTENELPRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFW 139
Query: 127 INLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186
I + F +LA A+++V K QI++SG+L D Q +V+VQ LNF++ SP
Sbjct: 140 IPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQPMSP 199
Query: 187 S------MSSYDSESNFMTAGKKYANSSGNNMCSTE--ELWQAFFASPNEWWDNRKNKKN 238
S MSS + E + + KK + ++ E + W +P EWWD+R+NK N
Sbjct: 200 SPSPFMVMSSSEKEESGI---KKQPARAKQDIVIDEASDSWNHLIENPKEWWDHRENKVN 256
Query: 239 ----PKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILD 272
P++PDFK KD+ +LW+ P WV +L L+
Sbjct: 257 GLVKPRHPDFKSKDSSFSLWLNKA--PNWVLPKLEGLE 292
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 216 EELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAILDTRM 275
EE W+ +P++WWDNR +K+N K PDFKHK+TGEALW+ +P WV +L + +
Sbjct: 309 EESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKLPPVKKKQ 366
Query: 276 GSL 278
S+
Sbjct: 367 ESI 369
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=OSB3 PE=2 SV=1
Length = 440
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 8/188 (4%)
Query: 76 PPEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDE 134
P +I + E++N ++LIG V P++ GK A T ++ R + ++ WI + F +
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 135 LAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSE 194
LA +A QHV+K +I++SG+L D Q+ +V+VQ LNFV+ ++ + +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 195 SNFMTAGKKYANSSGNNMCSTEEL---WQAFFASPNEWWDNRKNKKN----PKYPDFKHK 247
+T+ KK S EE W+ +P EW D+R NK N P +PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 248 DTGEALWV 255
G +LW+
Sbjct: 251 VGGLSLWL 258
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 216 EELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAIL 271
EE+W+ +P++WWDNR +K+NPK PDFKHK+TGEALW+ +P W S+L L
Sbjct: 377 EEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIGD--SPTWALSKLPPL 430
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 211 NMCSTEELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQLAI 270
N EE W+ +P++W DNR +K N KYPDFKHK+TGEALW+ +P WV S+L
Sbjct: 286 NQLKGEESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMTN--SPIWVLSKLPP 343
Query: 271 L 271
L
Sbjct: 344 L 344
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2
SV=1
Length = 360
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 123/260 (47%), Gaps = 41/260 (15%)
Query: 31 SLSPSQNPLTKQAWFISHRQPLKLRLRCSVDCK------DHQYSSQVSYPKPPEIPWDKE 84
S+ PS N +++W +S +Q L S + S +P+P E+P+ +
Sbjct: 11 SIRPSLNSTARKSWVLSSQQFLSTSSTESSSRTRGGGGGNRAEKSSEEWPRPMEVPYQPK 70
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLA--------VRKSATQTSWINLTFWDELA 136
+ N++ LIG V P++ GK A T ++ ++ WI + F +LA
Sbjct: 71 IANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDLA 130
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTY------------YKVVVQQLNFVERS 184
H A+ +++K +++I+G+++ DV++SG Q + ++V+V+ L+++E S
Sbjct: 131 HTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQVMVRDLHYIEGS 190
Query: 185 SPS---MSSYDSESNFM--TAGKKYANSSGNNMCSTEELWQAFFASPNEWWDNRKNKK-- 237
+ + D + +A + G N LW PNEW D R+ K+
Sbjct: 191 KAMPKVLPTLDQNEGVLKHSASVQRGREFGTN------LWFDLVDKPNEWCDYREMKQNG 244
Query: 238 --NPKYPDFKHKDTGEALWV 255
NPK+PDFK KD +ALW+
Sbjct: 245 SVNPKHPDFKKKDGSQALWL 264
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 214 STEELWQAFFASPNEWWDNRKNKKNPKYPDFKHKDTGEALWVEGRYNPGWVKSQL 268
+ EE W+ + N+WWDNR +K+ PK PDFKHK+TG LW+ +P WV +L
Sbjct: 291 AGEESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSD--SPSWVLEKL 343
>sp|P66849|SSB_NEIMB Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup B (strain MC58) GN=ssb PE=3 SV=1
Length = 174
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++P+G+ + +A ++ +T W N+T + +LA +
Sbjct: 4 NKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEI 63
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A Q+++KG +Y+ GR+ S + DG ++T Y +V ++ +
Sbjct: 64 AGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKML 106
>sp|P66848|SSB_NEIMA Single-stranded DNA-binding protein OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=ssb PE=3
SV=1
Length = 174
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++P+G+ + +A ++ +T W N+T + +LA +
Sbjct: 4 NKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEI 63
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A Q+++KG +Y+ GR+ S + DG ++T Y +V ++ +
Sbjct: 64 AGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKML 106
>sp|P59932|SSB_RHOBA Single-stranded DNA-binding protein OS=Rhodopirellula baltica
(strain SH1) GN=ssb PE=3 SV=1
Length = 169
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWIN------LTFWDELAHV 138
N V L+G + IE ++LPSG +A +AV ++ A+ W+ +T + A V
Sbjct: 5 NRVMLMGNLTRDIELRYLPSGMAVAEFSIAVNEKRKASDGQWVEDVSFFEITLFGRTAEV 64
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
AS+++ KG I++ GRL D E DGQ+++ KV+ +++ +
Sbjct: 65 ASEYLSKGSPIFVEGRLKQDTWEK-DGQKRSKVKVIGERMQMI 106
>sp|Q8Y2B4|SSB_RALSO Single-stranded DNA-binding protein OS=Ralstonia solanacearum
(strain GMI1000) GN=ssb PE=3 SV=1
Length = 178
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 10/105 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVR-----KSATQ----TSWINLTFWDELA 136
N V ++G +G ET+++PSG + R+A K++ + T W + F+ LA
Sbjct: 4 VNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLA 63
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
+A ++++KG Q+Y+ GRL + E DGQ+Q ++V +Q+ +
Sbjct: 64 EIAGEYLKKGSQVYVEGRLKTRQWEK-DGQKQYSTEIVAEQMQML 107
>sp|Q9KUW2|SSB_VIBCH Single-stranded DNA-binding protein OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ssb PE=3
SV=1
Length = 177
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELA 136
N V LIG +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 6 VNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + + GQ + +VVVQ N +
Sbjct: 66 EVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGI 110
>sp|Q8DCJ0|SSB_VIBVU Single-stranded DNA-binding protein OS=Vibrio vulnificus (strain
CMCP6) GN=ssb PE=3 SV=1
Length = 179
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++PSG +A W A + +T W +T + +LA
Sbjct: 7 NKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + + +GQ + +VVVQ N +
Sbjct: 67 VAGEYLRKGSQVYIEGQLQTRKWQDQNGQDRYSTEVVVQGYNGI 110
>sp|P59933|SSB_WOLSU Single-stranded DNA-binding protein OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=ssb PE=3 SV=1
Length = 162
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK--------SATQTSWINLTFWDELA 136
+ N V L+G + +E ++LPSG LA +A + + ++++ + A
Sbjct: 1 MYNKVILVGNLTRDVELRYLPSGSALAKIGIATNRRFKKQDGSQGDEVCFVDVNLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSE 194
+A+Q+++KG +I I GRLV + GQ+++ + V + L ++ S Y+ E
Sbjct: 61 EIANQYLKKGSKILIEGRLVLESWTDQSGQKRSKHSVTAESLQMLDSKGASQGGYEGE 118
>sp|P40947|SSB_PSEAE Single-stranded DNA-binding protein OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ssb PE=1 SV=3
Length = 165
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G VG ET+++P+G + LA +S +T W + F+ LA
Sbjct: 6 NKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAE 65
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
+A +++ KG Q+Y+ G L + + DGQ + ++VV
Sbjct: 66 IAGEYLRKGSQVYVEGSLRTRKWQGQDGQDRYTTEIVV 103
>sp|P59927|SSB_CUPNH Single-stranded DNA-binding protein OS=Cupriavidus necator (strain
ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ssb PE=3
SV=1
Length = 188
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV------RKSATQ---TSWINLTFWDELAH 137
N V L+G +G E +++PSG +A R+A ++S T W ++ + +LA
Sbjct: 5 NKVILVGNLGADPEVRYMPSGDAVANLRIATTDRYKDKQSGEMKEATEWHRVSMFGKLAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
+A Q++ KG +YI GR+ + + GQ + ++V Q+ +
Sbjct: 65 IAGQYLRKGSSVYIEGRIRTRKWQDQSGQDKYSTEIVADQMQML 108
>sp|Q87LA3|SSB_VIBPA Single-stranded DNA-binding protein OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=ssb PE=3 SV=1
Length = 176
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W A + +T W + + +LA
Sbjct: 7 NKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+Y+ G+L + + GQ + +VVVQ N V
Sbjct: 67 VAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGV 110
>sp|Q8DIU1|SSB_THEEB Single-stranded DNA-binding protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=ssb PE=3 SV=1
Length = 120
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--QTSWINLTFWDELAHVASQHVE 144
N VHL+G VG E ++ SG V LAV + + Q W NL W + A VA+ +V
Sbjct: 4 NVVHLVGRVGGDPEVRYFESGSVKCRLTLAVNRPSKDDQPDWFNLEIWGKTAQVAADYVR 63
Query: 145 KGQQIYISGRLVSDV-VESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSESNFMTAG 201
KG + I G L D + G ++ ++V++++ + S D++ N + AG
Sbjct: 64 KGTLLGIKGSLKFDRWQDRNTGVDRSSPIILVERMDILS------SKRDTDPNAVPAG 115
>sp|P0A2F6|SSB_SALTY Single-stranded DNA-binding protein OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb PE=3 SV=2
Length = 176
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELA 136
N V L+G +G E +++PSG +A LA +S QT W + + +LA
Sbjct: 6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + GQ++ ++ V Q+ V
Sbjct: 66 EVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGV 110
>sp|P0A2F7|SSB_SALTI Single-stranded DNA-binding protein OS=Salmonella typhi GN=ssb PE=3
SV=2
Length = 176
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELA 136
N V L+G +G E +++PSG +A LA +S QT W + + +LA
Sbjct: 6 VNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
VA +++ KG Q+YI G+L + GQ++ ++ V Q+ V
Sbjct: 66 EVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEINVPQIGGV 110
>sp|P0AGE3|SSB_SHIFL Single-stranded DNA-binding protein OS=Shigella flexneri GN=ssb
PE=3 SV=2
Length = 178
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE0|SSB_ECOLI Single-stranded DNA-binding protein OS=Escherichia coli (strain
K12) GN=ssb PE=1 SV=2
Length = 178
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE1|SSB_ECOL6 Single-stranded DNA-binding protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ssb PE=3 SV=2
Length = 178
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|P0AGE2|SSB_ECO57 Single-stranded DNA-binding protein OS=Escherichia coli O157:H7
GN=ssb PE=3 SV=2
Length = 178
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT QT W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VAS+++ KG Q+YI G+L + GQ + +VVV
Sbjct: 67 VASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV 104
>sp|O69302|SSB_CAMJE Single-stranded DNA-binding protein OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=ssb PE=3 SV=2
Length = 183
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT-------QTSWINLTFWDELAH 137
+ N V L+G + IE ++ SG + + +AV + T +T +I+++F+ A
Sbjct: 1 MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAE 60
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
VA+Q++ KG ++ I GRL + +GQ ++ + + V+ + + S+
Sbjct: 61 VANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENMEMLGNSN 108
>sp|Q8D254|SSB_WIGBR Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia
brevipalpis GN=ssb PE=3 SV=2
Length = 163
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK---------SATQTSWINLTFWDELAH 137
N V LIG +G E +++P+G + LA + S +T W + + +LA
Sbjct: 7 NKVILIGNLGQDPEVRYIPNGNAITNLSLATSENWRDKNTGESKEKTEWHRVILFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYD 192
VA ++++KG Q+YI G L + + +GQ + ++VV +N + + +SYD
Sbjct: 67 VAGEYLKKGSQVYIEGNLQTRKWQDQNGQDRYITEIVV-GINGCMQMLGNRASYD 120
>sp|P28046|SSB_PROMI Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb
PE=1 SV=2
Length = 174
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELA 136
N V LIG +G E +++PSG +A LA +S +T W + + +LA
Sbjct: 6 VNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
+A +++ KG Q+YI G+L + + GQ + +VVV
Sbjct: 66 EIAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVV 104
>sp|Q55499|SSB_SYNY3 Single-stranded DNA-binding protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ssb PE=3 SV=1
Length = 121
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS----WINLTFWDELAHVASQ 141
N++HL+G G E K+ SG V+ LAV + ++ W +L W + A +A
Sbjct: 3 VNSIHLVGRAGRDPEVKYFESGNVVCNFTLAVNRRTSKKDEPPDWFDLEIWGKTAEIAGN 62
Query: 142 HVEKGQQIYISGRLVSD 158
+V+KG I I G L D
Sbjct: 63 YVKKGSLIGIQGSLKFD 79
>sp|Q9XJG4|SSB_BPP1 Single-stranded DNA-binding protein OS=Enterobacteria phage P1
GN=ssb PE=3 SV=1
Length = 162
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V LIG +G E +++P+G + +A +S QT W + + +LA
Sbjct: 7 NKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTEWHKVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
+AS+++ KG Q+YI G+L
Sbjct: 67 IASEYLRKGSQVYIEGKL 84
>sp|P0A4K0|SSB1_NOSS1 Single-stranded DNA-binding protein 1 OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ssb1 PE=3 SV=1
Length = 119
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWINLTFWDELAHVASQHVE 144
N V L+G VGT + K+ SG V LAV R + W L WD+ A VA +V
Sbjct: 4 NIVTLVGRVGTDPDIKYFESGSVKCRLTLAVNRRSKNDKPDWFTLELWDKTAEVAGNYVR 63
Query: 145 KGQQIYISGRLVSD 158
KG I + G L D
Sbjct: 64 KGSLIGVKGSLKFD 77
>sp|P0A4K1|SSB1_ANAVA Single-stranded DNA-binding protein 1 OS=Anabaena variabilis
GN=ssb1 PE=3 SV=1
Length = 119
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV--RKSATQTSWINLTFWDELAHVASQHVE 144
N V L+G VGT + K+ SG V LAV R + W L WD+ A VA +V
Sbjct: 4 NIVTLVGRVGTDPDIKYFESGSVKCRLTLAVNRRSKNDKPDWFTLELWDKTAEVAGNYVR 63
Query: 145 KGQQIYISGRLVSD 158
KG I + G L D
Sbjct: 64 KGSLIGVKGSLKFD 77
>sp|P77953|SSB_SHEHA Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb
PE=3 SV=1
Length = 226
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A +A +S +T W N+ + LA
Sbjct: 6 VNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQPQERTEWHNIVMYRRLAE 65
Query: 138 VASQHVEKGQQIYISGRL 155
+A ++++KG +IYI G+L
Sbjct: 66 IAGEYLKKGSKIYIEGKL 83
>sp|Q82S98|SSB_NITEU Single-stranded DNA-binding protein OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=ssb PE=3 SV=1
Length = 149
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E +++PSG +A +A + +T W + + + A +
Sbjct: 5 NKVMLIGNLGRDPEIRYMPSGDAMANLNIATTDTWKDKGGEKQERTEWHRVVMFGKQAEI 64
Query: 139 ASQHVEKGQQIYISGRL 155
A ++++KG QIYI GRL
Sbjct: 65 AGEYLKKGSQIYIEGRL 81
>sp|O25841|SSB_HELPY Single-stranded DNA-binding protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ssb PE=1 SV=1
Length = 179
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELA 136
+ N V ++G + +E K+LPSG A LA + + +I+ + A
Sbjct: 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSESN 196
+A+Q++ KG + I GRL + G++ + + + L F+++ S + + + +
Sbjct: 61 EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDS 120
Query: 197 FMTAGKKYANSSGNNMCSTEELWQAF 222
M A + +N S + QA+
Sbjct: 121 IMHENSNNAYPANHNAPSQDPFNQAY 146
>sp|Q8ZJ06|SSB_YERPE Single-stranded DNA-binding protein OS=Yersinia pestis GN=ssb PE=3
SV=1
Length = 182
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELA 136
N V L+G +G E +++P+G +A LA +S +T W + + +LA
Sbjct: 6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLA 65
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VA +++ KG Q+YI G L + + GQ++ +VVV
Sbjct: 66 EVAGEYLRKGSQVYIEGALQTRKWQDQSGQERYTTEVVV 104
>sp|P25762|SSB_SERMA Single-stranded DNA-binding protein OS=Serratia marcescens GN=ssb
PE=1 SV=2
Length = 176
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAV----RKSAT-----QTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A LA R AT +T W + + +LA
Sbjct: 7 NKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVV 175
VA +++ KG Q+YI G L + + GQ + ++VV
Sbjct: 67 VAGEYLRKGSQVYIEGSLQTRKWQDQSGQDRYTTEIVV 104
>sp|Q9PDI7|SSB2_XYLFA Single-stranded DNA-binding protein 2 OS=Xylella fastidiosa (strain
9a5c) GN=ssb2 PE=3 SV=1
Length = 164
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G + K+ G + LA VRK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q YI G + D DGQ++ ++V ++ +
Sbjct: 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQML 108
>sp|Q87DQ5|SSB_XYLFT Single-stranded DNA-binding protein OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=ssb PE=3 SV=1
Length = 164
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G + K+ G + LA VRK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q YI G + D DGQ++ ++V ++ +
Sbjct: 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQML 108
>sp|P28045|SSBR_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|P18022|SSBP_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=3
Length = 175
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|Q8PIJ2|SSB_XANAC Single-stranded DNA-binding protein OS=Xanthomonas axonopodis pv.
citri (strain 306) GN=ssb PE=3 SV=1
Length = 180
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G +TK+ +G + LA +RK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q+Y+ G L D DG ++ +V ++ +
Sbjct: 66 AGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQML 108
>sp|P28044|SSB7_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 175
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A ++A +S QT W + + +LA
Sbjct: 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEIREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|Q8P778|SSB_XANCP Single-stranded DNA-binding protein OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=ssb PE=3 SV=1
Length = 172
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLA---VRK-----SATQTSWINLTFWDELAHV 138
N V L+G +G +TK+ +G + LA +RK + +T W + F+ +L +
Sbjct: 6 NKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEI 65
Query: 139 ASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFV 181
A +++ KG Q+Y+ G L D DG ++ +V ++ +
Sbjct: 66 AGEYLRKGSQVYVEGELRYDKYTGQDGVEKYSTDIVANEMQML 108
>sp|P28043|SSB2_ECOLX Plasmid-derived single-stranded DNA-binding protein OS=Escherichia
coli GN=ssb PE=3 SV=2
Length = 179
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G +G E +++P+G +A W K QT W + + +LA
Sbjct: 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSETWRDKQTGKMREQTEWHRVVLFGKLAE 66
Query: 138 VASQHVEKGQQIYISGRL 155
VA +++ KG Q+YI G+L
Sbjct: 67 VAGEYLRKGAQVYIEGQL 84
>sp|P59930|SSB_HAEDU Single-stranded DNA-binding protein OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=ssb PE=3 SV=1
Length = 176
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQ---------TSWINLTFWDELAH 137
N V ++G +G E + +P+G+ +A +A +S T T W + F+ A
Sbjct: 5 NKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAE 64
Query: 138 VASQHVEKGQQIYISGRLVSDVVESGDGQ 166
VA Q++ KG Q+Y+ GRL + + +GQ
Sbjct: 65 VAGQYLRKGSQVYVEGRLKTRKWQDQNGQ 93
>sp|Q9ZJY2|SSB_HELPJ Single-stranded DNA-binding protein OS=Helicobacter pylori (strain
J99) GN=ssb PE=3 SV=1
Length = 181
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELA 136
+ N V ++G + +E K+LPSG A LA + + +I+ + A
Sbjct: 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185
+A+Q++ KG + I GRL + G++ + + + L F+++ S
Sbjct: 61 EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKS 109
>sp|Q8KB47|SSB1_CHLTE Single-stranded DNA-binding protein 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=ssb1 PE=3 SV=1
Length = 162
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS--------ATQTSWINLTFWDELAHV 138
N V LIG +G E + SG+ + LA + +T W + W +LA +
Sbjct: 6 NKVMLIGHLGNDPERRETASGQSVVNFTLATSEGFKDSSGNLQERTEWHRIVAWGKLADI 65
Query: 139 ASQHVEKGQQIYISGRL 155
SQ+++KG+Q+YI GRL
Sbjct: 66 CSQYLKKGRQVYIEGRL 82
>sp|P0C118|SSB_BRUAB Single-stranded DNA-binding protein OS=Brucella abortus biovar 1
(strain 9-941) GN=ssb PE=3 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-L 135
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E L
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENL 64
Query: 136 AHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
A VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 65 AKVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSKEIVLQKF 107
>sp|Q2YPX7|SSB_BRUA2 Single-stranded DNA-binding protein OS=Brucella abortus (strain
2308) GN=ssb PE=3 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-L 135
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E L
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENL 64
Query: 136 AHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
A VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 65 AKVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSKEIVLQKF 107
>sp|Q8G0J1|SSB_BRUSU Single-stranded DNA-binding protein OS=Brucella suis biovar 1
(strain 1330) GN=ssb PE=3 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-L 135
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E L
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENL 64
Query: 136 AHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQL 178
A VA Q+++KG ++YI G L + + +G + ++V+Q+
Sbjct: 65 AKVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSTEIVLQKF 107
>sp|P59931|SSB_HELHP Single-stranded DNA-binding protein OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=ssb PE=3 SV=1
Length = 170
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK--------SATQTSWINLTFWDELA 136
+ N V +IG + +E ++LPSG LA LA + + +I++ + A
Sbjct: 1 MYNKVIIIGNLTRDVELRYLPSGSALATIGLASNRRFKKQDGSQGEEVCFIDVKLFGRSA 60
Query: 137 HVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187
VA+Q++ KG +I I GRL + G +++ + + + + ++ S PS
Sbjct: 61 EVANQYLRKGSKILIEGRLSLESWNDQSGAKRSRHTITAESMQMLD-SKPS 110
>sp|Q8YHC2|SSB_BRUME Single-stranded DNA-binding protein OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ssb PE=3
SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS---------ATQTSWINLTFWDE-L 135
N V L+G +G E + L SG ++A R+A +S +T W ++ ++E L
Sbjct: 5 VNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENL 64
Query: 136 AHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPSMSSYDSES 195
A VA Q+++KG ++YI G L + + +G + ++V+Q+ R M SE
Sbjct: 65 AKVAEQYLKKGAKVYIEGALQTRKWQDQNGNDRYSTEIVLQKF----RGELQMLDSRSEG 120
Query: 196 NFMTAGKKYANSSGNNMCS 214
+ G+ + N S
Sbjct: 121 ---SEGRSFGGGGNRNQMS 136
>sp|Q889U1|SSB_PSESM Single-stranded DNA-binding protein OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=ssb PE=1 SV=1
Length = 189
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 87 NTVHLIGVVGTPIETKHLPSGKVLA---------WTRLAVRKSATQTSWINLTFWDELAH 137
N V L+G G E ++LP+G + WT + +T W ++ + ++A
Sbjct: 6 NKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVEKTEWHRVSMFGKVAE 65
Query: 138 VASQHVEKGQQIYISGRL 155
+A +++ KG Q+YI G+L
Sbjct: 66 IAGEYLRKGSQVYIEGKL 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,331,735
Number of Sequences: 539616
Number of extensions: 4972877
Number of successful extensions: 11368
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 11135
Number of HSP's gapped (non-prelim): 175
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)