Query 022388
Match_columns 298
No_of_seqs 215 out of 1170
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vdy_A SSB, single-stranded DN 99.9 5.6E-27 1.9E-31 191.6 15.7 103 84-186 3-111 (116)
2 2vw9_A Single-stranded DNA bin 99.9 1.9E-26 6.6E-31 193.6 15.1 103 85-187 1-111 (134)
3 3koj_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 187.2 12.5 96 84-179 9-107 (108)
4 3ulp_A Single-strand binding p 99.9 5.6E-26 1.9E-30 188.0 13.4 103 84-186 4-122 (124)
5 3ull_A DNA binding protein; DN 99.9 3.3E-26 1.1E-30 191.4 11.6 104 82-185 10-128 (132)
6 3tqy_A Single-stranded DNA-bin 99.9 1.8E-25 6E-30 192.8 15.7 106 82-187 4-118 (158)
7 1z9f_A Single-strand binding p 99.9 8.7E-26 3E-30 193.9 13.5 105 82-186 12-124 (153)
8 1qvc_A Single stranded DNA bin 99.9 1.8E-25 6.1E-30 190.0 14.3 105 83-187 2-118 (145)
9 3lgj_A Single-stranded DNA-bin 99.9 6.8E-25 2.3E-29 191.2 13.6 104 84-187 21-138 (169)
10 3pgz_A Single-stranded DNA-bin 99.9 1.8E-24 6.1E-29 192.1 14.8 106 82-187 22-141 (193)
11 1txy_A Primosomal replication 99.9 5E-25 1.7E-29 177.4 8.9 96 85-184 1-103 (104)
12 4dam_A Single-stranded DNA-bin 99.9 3.5E-24 1.2E-28 178.9 13.5 95 85-181 14-118 (128)
13 3afp_A Single-stranded DNA-bin 99.9 2.7E-24 9.3E-29 187.0 12.4 101 85-185 3-117 (168)
14 1eqq_A Single stranded DNA bin 99.9 7.7E-25 2.6E-29 192.2 8.7 103 84-186 4-118 (178)
15 3k7u_C MP18 RNA editing comple 99.9 4.2E-24 1.4E-28 182.6 12.2 103 82-186 2-119 (148)
16 4gs3_A Single-stranded DNA-bin 99.9 2.9E-24 9.9E-29 174.5 10.6 94 87-182 12-106 (107)
17 1v1q_A Primosomal replication 99.9 6E-24 2.1E-28 179.0 10.4 99 85-187 18-123 (134)
18 2fxq_A Single-strand binding p 99.9 3.7E-23 1.2E-27 190.7 15.7 106 81-187 123-233 (264)
19 3eiv_A Single-stranded DNA-bin 99.9 5.3E-23 1.8E-27 183.4 14.0 97 84-180 2-108 (199)
20 1se8_A Single-strand binding p 99.9 1.3E-22 4.3E-27 191.1 15.3 105 82-186 1-114 (301)
21 2fxq_A Single-strand binding p 99.9 1.5E-22 5.1E-27 186.6 11.6 102 83-185 2-111 (264)
22 1se8_A Single-strand binding p 99.9 3E-22 1E-26 188.5 13.0 106 81-187 124-237 (301)
23 3k81_C MP18 RNA editing comple 99.9 1.4E-22 4.7E-27 175.7 9.7 106 79-186 15-135 (164)
24 3fhw_A Primosomal replication 99.9 2.7E-21 9.2E-26 158.9 11.9 93 86-185 1-100 (115)
25 3k8a_A Putative primosomal rep 99.9 2.5E-21 8.4E-26 156.2 10.4 90 85-182 6-102 (103)
26 4dni_A Fusion protein of RNA-e 99.8 2.7E-20 9.1E-25 171.8 13.2 89 85-176 145-245 (257)
27 3en2_A Probable primosomal rep 99.8 5.9E-19 2E-23 141.9 8.1 78 85-163 1-85 (101)
28 4dni_A Fusion protein of RNA-e 99.7 2.5E-17 8.4E-22 152.0 11.4 95 84-182 28-128 (257)
29 3stb_C RNA-editing complex pro 99.7 1.1E-16 3.8E-21 136.3 13.6 89 84-174 42-136 (148)
30 4dka_C RNA-editing complex pro 97.2 0.0016 5.5E-08 52.1 8.8 75 87-163 4-81 (105)
31 3e0e_A Replication protein A; 96.2 0.026 8.7E-07 43.9 8.7 80 87-183 12-95 (97)
32 3dm3_A Replication factor A; p 96.0 0.075 2.6E-06 42.1 10.9 83 87-183 15-99 (105)
33 2k50_A Replication factor A re 95.8 0.018 6E-07 45.6 6.3 68 87-160 17-88 (115)
34 1o7i_A SSB, SSO2364, single st 94.9 0.072 2.5E-06 42.6 7.2 64 86-158 12-79 (119)
35 1ynx_A Replication factor-A pr 94.7 0.061 2.1E-06 42.8 6.2 65 85-154 13-80 (114)
36 2k75_A Uncharacterized protein 94.0 0.24 8.3E-06 39.0 8.2 61 85-157 12-75 (106)
37 4gop_B Putative uncharacterize 92.5 0.8 2.7E-05 37.3 9.4 87 77-183 27-116 (136)
38 3f2b_A DNA-directed DNA polyme 92.3 1 3.5E-05 48.6 12.3 88 84-184 15-104 (1041)
39 2hql_A Hypothetical protein Mg 91.5 4.1 0.00014 31.8 12.2 82 84-170 6-90 (110)
40 3kdf_D Replication protein A 3 90.4 1.3 4.6E-05 35.7 8.6 86 78-183 23-111 (132)
41 3au7_A TIAS, putative uncharac 88.5 3.5 0.00012 40.0 11.2 79 84-184 282-362 (402)
42 3kf8_A Protein STN1; OB fold; 87.5 2.6 8.8E-05 37.7 9.0 100 84-184 83-185 (220)
43 1jmc_A Protein (replication pr 87.0 1.9 6.4E-05 37.9 7.8 64 85-153 17-83 (246)
44 4gop_C Putative uncharacterize 84.3 1.9 6.4E-05 41.6 6.9 64 86-154 13-79 (444)
45 2pi2_A Replication protein A 3 84.2 2.7 9.1E-05 38.1 7.6 85 79-183 64-151 (270)
46 1eov_A ASPRS, aspartyl-tRNA sy 84.0 10 0.00035 37.3 12.2 88 87-185 37-131 (487)
47 2hpi_A DNA polymerase III alph 82.9 1.8 6E-05 47.6 6.7 81 87-183 1043-1123(1220)
48 3kf6_A Protein STN1; OB fold, 82.7 9.8 0.00034 32.1 10.0 81 84-183 45-128 (159)
49 2kbn_A Conserved protein; nucl 78.7 15 0.00051 28.6 9.2 61 86-157 15-76 (109)
50 3bju_A Lysyl-tRNA synthetase; 76.4 13 0.00046 36.8 10.2 80 87-184 56-141 (521)
51 1wjj_A Hypothetical protein F2 75.7 7.8 0.00027 32.3 7.1 64 84-156 24-100 (145)
52 2vl6_A SSO MCM N-TER, minichro 75.0 7.3 0.00025 34.9 7.3 56 123-182 209-266 (268)
53 2xgt_A Asparaginyl-tRNA synthe 74.2 22 0.00075 34.3 10.9 82 87-183 12-96 (435)
54 1n9w_A Aspartyl-tRNA synthetas 74.1 25 0.00087 33.8 11.3 74 87-184 14-88 (422)
55 1wyd_A Hypothetical aspartyl-t 74.0 19 0.00065 34.8 10.4 80 87-184 17-98 (429)
56 4ex5_A Lysine--tRNA ligase; st 73.7 40 0.0014 33.6 12.8 79 87-184 87-169 (529)
57 1x54_A Asparaginyl-tRNA synthe 73.0 35 0.0012 32.9 12.0 81 87-184 17-101 (434)
58 1jmc_A Protein (replication pr 71.4 20 0.00069 31.1 9.1 64 88-155 140-206 (246)
59 3a74_A Lysyl-tRNA synthetase; 71.3 46 0.0016 32.7 12.5 78 88-184 58-139 (493)
60 3m4p_A Ehasnrs, asparaginyl-tR 70.7 19 0.00067 35.0 9.7 85 86-184 30-122 (456)
61 3nem_A Aspartyl-tRNA synthetas 70.5 37 0.0013 32.8 11.6 82 87-185 17-102 (438)
62 1c0a_A Aspartyl tRNA synthetas 67.1 29 0.00098 34.9 10.2 83 88-185 17-106 (585)
63 1e1o_A Lysyl-tRNA synthetase, 66.7 46 0.0016 32.9 11.5 78 88-184 66-148 (504)
64 3i7f_A Aspartyl-tRNA synthetas 65.1 28 0.00097 34.9 9.6 87 87-185 63-154 (548)
65 1l0w_A Aspartyl-tRNA synthetas 61.6 30 0.001 34.8 9.2 83 88-185 18-104 (580)
66 4hik_A Protection of telomeres 55.2 10 0.00036 31.5 3.8 59 86-152 14-92 (143)
67 1ltl_A DNA replication initiat 51.4 20 0.00069 32.3 5.4 53 123-182 196-248 (279)
68 4gop_C Putative uncharacterize 46.4 37 0.0013 32.4 6.7 65 88-154 135-204 (444)
69 4ah6_A Aspartate--tRNA ligase, 38.7 1.2E+02 0.004 30.9 9.2 81 87-185 25-114 (617)
70 1xjv_A Protection of telomeres 37.1 33 0.0011 31.0 4.5 70 86-160 15-84 (294)
71 3ebe_A Protein MCM10 homolog; 36.9 36 0.0012 29.6 4.5 63 88-153 57-119 (200)
72 1t9f_A Protein 1D10; structura 25.2 11 0.00037 32.3 -0.9 30 242-271 132-161 (187)
73 3mal_A Stromal cell-derived fa 25.0 10 0.00036 32.9 -1.1 31 240-270 142-172 (199)
74 1qzg_A Protection of telomeres 20.4 99 0.0034 26.7 4.2 72 87-160 43-117 (187)
No 1
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.95 E-value=5.6e-27 Score=191.60 Aligned_cols=103 Identities=22% Similarity=0.391 Sum_probs=91.4
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC------CCceEEEEEEehHHHHHHHhcCccCceEEEEEEeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
+|||+|+|+|+|++||+++++++|.++++|+||+++.+ .+++||+|++||++|+.+.++|+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 69999999999999999999999999999999999864 268999999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeecCCC
Q 022388 158 DVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIva~~I~fl~~k~~ 186 (298)
+.|+|++|++++.++|+|++|.||++++.
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~ 111 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPR 111 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 99999999999999999999999987654
No 2
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.94 E-value=1.9e-26 Score=193.59 Aligned_cols=103 Identities=25% Similarity=0.431 Sum_probs=95.4
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC--------CCceEEEEEEehHHHHHHHhcCccCceEEEEEEee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLV 156 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~--------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~ 156 (298)
|||+|+|+|+|++||+++++++|.++|.|+||+++++ +.++||+|++||++|+.++++|+||++|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 6999999999999999999999999999999999753 16889999999999999999999999999999999
Q ss_pred eeeeecCCCcEEEEEEEEEEEEEEeecCCCC
Q 022388 157 SDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (298)
Q Consensus 157 s~~~~dkdG~~r~~~eIva~~I~fl~~k~~s 187 (298)
++.|+|++|++++.++|+|++|.||..+...
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~ 111 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSDN 111 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC---
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCccc
Confidence 9999999999999999999999999877654
No 3
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.94 E-value=2.3e-26 Score=187.16 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=81.6
Q ss_pred CCcceEEEEEEeCCCceEEEcCCC-cEEEEEEEEEecCC--CCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSG-KVLAWTRLAVRKSA--TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nG-k~va~f~LAv~r~~--~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
..||+|+|+|||++||++|++++| .++|+|+||+++.. ++++||+|++||++||.+.+||+||++|+|+|+|++++|
T Consensus 9 ~~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y 88 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSL 88 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-
T ss_pred cccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeE
Confidence 469999999999999999999998 99999999999432 479999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEEEEEEEEE
Q 022388 161 ESGDGQQQTYYKVVVQQLN 179 (298)
Q Consensus 161 ~dkdG~~r~~~eIva~~I~ 179 (298)
++++|++++.++|+|++|.
T Consensus 89 ~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 89 LKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp -------CCEEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEEE
Confidence 9999999999999999875
No 4
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.93 E-value=5.6e-26 Score=187.99 Aligned_cols=103 Identities=22% Similarity=0.428 Sum_probs=92.5
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEeh-HHHHHHHhcCccCceEEEEE
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWD-ELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg-~lAe~~a~~LkKGD~V~VsG 153 (298)
+|||+|+|+|+|++||+++++++|+++|+|+||+++.+ ++++||+|++|| ++|+.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 68999999999999999999999999999999999752 168999999999 89999999999999999999
Q ss_pred EeeeeeeecC--CCcEEEEEEEEEE----EEEEeecCCC
Q 022388 154 RLVSDVVESG--DGQQQTYYKVVVQ----QLNFVERSSP 186 (298)
Q Consensus 154 rL~s~~~~dk--dG~~r~~~eIva~----~I~fl~~k~~ 186 (298)
+|+++.|+|+ +|++++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 9999999999 9999999999998 9999988653
No 5
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.93 E-value=3.3e-26 Score=191.40 Aligned_cols=104 Identities=21% Similarity=0.356 Sum_probs=94.3
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC--------------CceEEEEEEeh-HHHHHHHhcCccC
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT--------------QTSWINLTFWD-ELAHVASQHVEKG 146 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~--------------~t~wi~Vv~wg-~lAe~~a~~LkKG 146 (298)
|+++||+|+|+|+|++||+++++++|.++|+|+||+++.+. .++||+|++|| ++|+.+++||+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 44689999999999999999999999999999999998532 57899999999 5999999999999
Q ss_pred ceEEEEEEeeeeeeecCCCcEEEEEEEEEEEEEEeecCC
Q 022388 147 QQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 147 D~V~VsGrL~s~~~~dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
++|+|+|+|+++.|+|++|++++.++|+|++|.||++++
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~ 128 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQT 128 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC----
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCC
Confidence 999999999999999999999999999999999998754
No 6
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.93 E-value=1.8e-25 Score=192.79 Aligned_cols=106 Identities=24% Similarity=0.445 Sum_probs=95.8
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC--C-------CceEEEEEEehHHHHHHHhcCccCceEEEE
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--T-------QTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~--~-------~t~wi~Vv~wg~lAe~~a~~LkKGD~V~Vs 152 (298)
|...||+|+|+|+|++||++|++++|+++|.|+||+++.+ . .++||+|++||++|+.+.+||+||++|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 5667999999999999999999999999999999998753 1 489999999999999999999999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeecCCCC
Q 022388 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (298)
Q Consensus 153 GrL~s~~~~dkdG~~r~~~eIva~~I~fl~~k~~s 187 (298)
|+|+++.|++++|++++.++|+|++|.||..+..+
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~ 118 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGG 118 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC-----
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCccc
Confidence 99999999999999999999999999999987754
No 7
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=8.7e-26 Score=193.87 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=85.8
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEec-CCC-------CceEEEEEEehHHHHHHHhcCccCceEEEEE
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRK-SAT-------QTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r-~~~-------~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsG 153 (298)
-+.+||+|+|+|||++||++|++++|+++|+|+||+++ .+. +++||+|++||++|+.++++|+||++|+|+|
T Consensus 12 ~~~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 12 HMSFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp CCSCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cccceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEE
Confidence 35689999999999999999999999999999999998 532 2899999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEEeecCCC
Q 022388 154 RLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eIva~~I~fl~~k~~ 186 (298)
+|+++.|++++|++++.++|+|++|.||.+++.
T Consensus 92 rL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~ 124 (153)
T 1z9f_A 92 EMRMRRWETPTGEKRVSPEVVANVVRFMDRKPA 124 (153)
T ss_dssp EEEEEC-------CCCEEEEEEEEEEECC----
T ss_pred EEEeceEECCCCCEEEEEEEEEEEEEEccCCCc
Confidence 999999999999999999999999999987654
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.93 E-value=1.8e-25 Score=189.99 Aligned_cols=105 Identities=30% Similarity=0.432 Sum_probs=98.2
Q ss_pred cCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEehHHHHHHHhcCccCceEEEEE
Q 022388 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 83 ~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsG 153 (298)
++|||+|+|+|+|++||++|++++|+++|.|+||+++.+ +.++||+|++||++|+.+++||+||++|+|+|
T Consensus 2 ~~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred CCceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEE
Confidence 368999999999999999999999999999999999853 25899999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEE---EEEEEEEeecCCCC
Q 022388 154 RLVSDVVESGDGQQQTYYKV---VVQQLNFVERSSPS 187 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eI---va~~I~fl~~k~~s 187 (298)
+|+++.|+|++|++++.++| +|++|.||.++...
T Consensus 82 ~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 82 QLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 99999999999999999999 99999999987654
No 9
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.92 E-value=6.8e-25 Score=191.18 Aligned_cols=104 Identities=26% Similarity=0.473 Sum_probs=86.1
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEehH-HHHHHHhcCccCceEEEEE
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDE-LAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg~-lAe~~a~~LkKGD~V~VsG 153 (298)
.|||+|+|+|+|++||++|++++|+++|+|+||+++.+ +.++||+|++||+ +|+.+.+||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 68999999999999999999999999999999999853 2589999999999 9999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEE----EEEEEeecCCCC
Q 022388 154 RLVSDVVESGDGQQQTYYKVVV----QQLNFVERSSPS 187 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eIva----~~I~fl~~k~~s 187 (298)
+|+++.|+|++|++++.++|+| .+|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999999999999999998 699999987654
No 10
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.92 E-value=1.8e-24 Score=192.09 Aligned_cols=106 Identities=30% Similarity=0.488 Sum_probs=94.1
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEehH-HHHHHHhcCccCceEEE
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDE-LAHVASQHVEKGQQIYI 151 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg~-lAe~~a~~LkKGD~V~V 151 (298)
|...||+|+|+|||++||++|++++|+++|+|+||+++.+ +.++||+|++|++ +|+.+.+||+||++|+|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~V 101 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYI 101 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEE
Confidence 4456999999999999999999999999999999999753 1489999999996 99999999999999999
Q ss_pred EEEeeeeeeecCCCcEEEEEEEEEE----EEEEeecCCCC
Q 022388 152 SGRLVSDVVESGDGQQQTYYKVVVQ----QLNFVERSSPS 187 (298)
Q Consensus 152 sGrL~s~~~~dkdG~~r~~~eIva~----~I~fl~~k~~s 187 (298)
+|+|+++.|+|++|++++.++|+|+ +|.||+++...
T Consensus 102 eGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 102 EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 9999999999999999999999999 79999988755
No 11
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.91 E-value=5e-25 Score=177.36 Aligned_cols=96 Identities=17% Similarity=0.257 Sum_probs=80.7
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceE-------EEEEEehHHHHHHHhcCccCceEEEEEEeee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSW-------INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~w-------i~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
|||+|+|+|+|++||++|++++|.++|+|+||++....+++| |+|++||++|+.+.+||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 789999999999999999999999999999999755556778 9999999999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeecC
Q 022388 158 DVVESGDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIva~~I~fl~~k 184 (298)
+ +|++|+++ ++|+|++|.|++++
T Consensus 81 ~--~~~~G~~r--~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSK--MVLHAEQIELIDSG 103 (104)
T ss_dssp ----------C--CEEEEEEEEEC---
T ss_pred c--cCCCCCEE--EEEEEEEEEECcCC
Confidence 8 67899988 89999999999753
No 12
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.91 E-value=3.5e-24 Score=178.93 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=89.5
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC----------CCceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~----------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
-+|+|+|+|+|++||+++++++| ++|+|+||+++.+ .+++||+|++||++|+.++++|+||++|+|+|+
T Consensus 14 ~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 92 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGR 92 (128)
T ss_dssp CCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEE
Confidence 48999999999999999999999 9999999999753 168899999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEEEEEEe
Q 022388 155 LVSDVVESGDGQQQTYYKVVVQQLNFV 181 (298)
Q Consensus 155 L~s~~~~dkdG~~r~~~eIva~~I~fl 181 (298)
|+++.| |++|++++.++|+|++|..-
T Consensus 93 L~~~~~-dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 93 LKVRTD-VREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEE-EETTEEEEEEEEEEEEEEEC
T ss_pred EEEeEE-cCCCCEEEEEEEEEEEEEec
Confidence 999999 89999999999999999874
No 13
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.91 E-value=2.7e-24 Score=187.02 Aligned_cols=101 Identities=19% Similarity=0.365 Sum_probs=90.9
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC----------CCceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA----------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~----------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
.||+|+|+|||++||++|++++|+++|+|+||+++++ .+++||+|++|+++|+.+++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 5899999999999999999999999999999998542 158999999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEE----EEEEeecCC
Q 022388 155 LVSDVVESGDGQQQTYYKVVVQ----QLNFVERSS 185 (298)
Q Consensus 155 L~s~~~~dkdG~~r~~~eIva~----~I~fl~~k~ 185 (298)
|+++.|+|++|++++.++|+|+ +|.|+..+.
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~ 117 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKV 117 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEecccc
Confidence 9999999999999999999888 567776554
No 14
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.91 E-value=7.7e-25 Score=192.21 Aligned_cols=103 Identities=30% Similarity=0.438 Sum_probs=95.1
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~---------~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
+|||+|+|+|+|++||++|++++|+++|+|+||+++.+. .++||+|++||++|+.+.+||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 589999999999999999999999999999999998542 47899999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEE---EEEEEEEeecCCC
Q 022388 155 LVSDVVESGDGQQQTYYKV---VVQQLNFVERSSP 186 (298)
Q Consensus 155 L~s~~~~dkdG~~r~~~eI---va~~I~fl~~k~~ 186 (298)
|+++.|+|++|++++.++| +|++|.||..+..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 9999999999999999999 9999999987654
No 15
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.91 E-value=4.2e-24 Score=182.63 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=86.8
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEehHH-HHHHHhcCccCceEEE
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHVEKGQQIYI 151 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg~l-Ae~~a~~LkKGD~V~V 151 (298)
|+..||+|+|+|+|++||+ +++ +|+++|+|+||+++.+ +.++||+|++||++ |+.+.+||+||++|+|
T Consensus 2 M~~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~V 79 (148)
T 3k7u_C 2 MSKSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCV 79 (148)
T ss_dssp ---CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEE
T ss_pred CcccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEE
Confidence 4667999999999999999 999 9999999999999753 36899999999997 9999999999999999
Q ss_pred EEEeeeeeeecCCCcEEEEEEEEEE-----EEEEeecCCC
Q 022388 152 SGRLVSDVVESGDGQQQTYYKVVVQ-----QLNFVERSSP 186 (298)
Q Consensus 152 sGrL~s~~~~dkdG~~r~~~eIva~-----~I~fl~~k~~ 186 (298)
+|+|+++.|+|++|++++.++|++- .+.+|.+++.
T Consensus 80 eGrL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~ 119 (148)
T 3k7u_C 80 NGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 119 (148)
T ss_dssp EEEEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC-
T ss_pred EEEEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCC
Confidence 9999999999999999999999865 6999987653
No 16
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.91 E-value=2.9e-24 Score=174.53 Aligned_cols=94 Identities=26% Similarity=0.348 Sum_probs=82.0
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeee-eeeecCCC
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS-DVVESGDG 165 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s-~~~~dkdG 165 (298)
|+|+|+|+|++||+++++++|..++.|+|||+|..+.++||+|++|+++|+.+.. .||++|+|+|+|++ +.|++++|
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~--~kG~~v~v~G~lrsy~~~~~~dG 89 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNL--EVGTRVKIEGQLRSYNRKSPEEG 89 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCC--CTTCEEEEEEEEEEEECC-----
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhh--cCCCEEEEEEEEEecceEECCCC
Confidence 9999999999999999999999999999999999999999999999999998765 49999999999998 67899999
Q ss_pred cEEEEEEEEEEEEEEee
Q 022388 166 QQQTYYKVVVQQLNFVE 182 (298)
Q Consensus 166 ~~r~~~eIva~~I~fl~ 182 (298)
++++.++|+|++|.||+
T Consensus 90 ~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 90 KNKLILTVFARDISVVP 106 (107)
T ss_dssp ---EEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEEEEEcc
Confidence 99999999999999986
No 17
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.90 E-value=6e-24 Score=178.96 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=88.1
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC-------CCceEEEEEEehHHHHHHHhcCccCceEEEEEEeee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-------TQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~-------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
|||+|+|+|+|++||++|++++|.++|+|+||+++.. +.++||+|++||++||.+.+||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 5699999999999999999999999999999997532 135699999999999999999999999999999998
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEeecCCCC
Q 022388 158 DVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIva~~I~fl~~k~~s 187 (298)
+. +++|++++.+ +|++|.||+++.+.
T Consensus 98 r~--~k~G~kr~~~--~a~~i~~l~~k~~~ 123 (134)
T 1v1q_A 98 HK--AKNGLSKMVL--HAEQIELIDSVDKL 123 (134)
T ss_dssp EC--TTTTSCEEEE--EEEEEEETTSCSCC
T ss_pred EE--CCCCCEEEEE--EEEEEEECcCCCCc
Confidence 74 7899988664 89999999876654
No 18
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.90 E-value=3.7e-23 Score=190.72 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=94.7
Q ss_pred cCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEehHHHHHHHhcCccCceEEEEEEe
Q 022388 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (298)
Q Consensus 81 ~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~-----~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL 155 (298)
.++.+||+|+|+|+|++||+++++++|+++|+|+||+++.+ +.++||+|++||++|+.++ +|+||++|+|+|+|
T Consensus 123 ~m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 123 RLRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRL 201 (264)
T ss_dssp --CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEE
T ss_pred ccccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEE
Confidence 44568999999999999999999999999999999999864 3688999999999999999 99999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEeecCCCC
Q 022388 156 VSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (298)
Q Consensus 156 ~s~~~~dkdG~~r~~~eIva~~I~fl~~k~~s 187 (298)
+++.|++++|++++.++|+|++|.||.+++..
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 99999999999999999999999999876654
No 19
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.89 E-value=5.3e-23 Score=183.44 Aligned_cols=97 Identities=20% Similarity=0.380 Sum_probs=81.8
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecC-C---------CCceEEEEEEehHHHHHHHhcCccCceEEEEE
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKS-A---------TQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~-~---------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsG 153 (298)
..+|+|+|+|||++||++|++++|+++|+|+||++++ + .+++||+|++|+++|+.+++||+||++|+|+|
T Consensus 2 a~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 2 AGETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp --CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEE
T ss_pred CcccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEE
Confidence 3579999999999999999999999999999999842 1 26899999999999999999999999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEE
Q 022388 154 RLVSDVVESGDGQQQTYYKVVVQQLNF 180 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eIva~~I~f 180 (298)
+|++++|+|++|++++.++|+|++|..
T Consensus 82 rL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 82 RLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 999999999999999999999999987
No 20
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.89 E-value=1.3e-22 Score=191.08 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=91.8
Q ss_pred CcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC--------CCceEEEEEEehHHHHHHHhc-CccCceEEEE
Q 022388 82 DKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQH-VEKGQQIYIS 152 (298)
Q Consensus 82 ~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~--------~~t~wi~Vv~wg~lAe~~a~~-LkKGD~V~Vs 152 (298)
|..+||+|+|+|+|++||++|++++|+++|+|+||+++++ +.++||+|++||++|+.+.+| |+||++|+|+
T Consensus 1 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 1 MARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVE 80 (301)
T ss_dssp --CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEE
T ss_pred CCCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEE
Confidence 3457999999999999999999999999999999999753 147899999999999999999 9999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeecCCC
Q 022388 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSP 186 (298)
Q Consensus 153 GrL~s~~~~dkdG~~r~~~eIva~~I~fl~~k~~ 186 (298)
|+|+++.|++++|++++.++|+|++|.||..++.
T Consensus 81 G~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 81 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 9999999999999999999999999999987653
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.88 E-value=1.5e-22 Score=186.64 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=85.9
Q ss_pred cCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC--------CCceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 83 KELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 83 ~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~--------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
+.+||+|+|+|+|++||++|++++|.++|+|+||+++.+ +.++||+|++||++|+.+.+||+||++|+|+|+
T Consensus 2 ~~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 2 ARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp -CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred CCceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 347999999999999999999999999999999999853 147899999999999999999999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEEEEEEeecCC
Q 022388 155 LVSDVVESGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 155 L~s~~~~dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
|+++.|++ +|++++.++|+|++|.||..+.
T Consensus 82 L~~~~~~~-dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 82 LEYRQWEK-DGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEEC----------CCEEEEEEEEEECCCC-
T ss_pred EEeeeEEe-CCEEEEEEEEEEEEEEECcCCc
Confidence 99999998 9999999999999999998765
No 22
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.87 E-value=3e-22 Score=188.52 Aligned_cols=106 Identities=24% Similarity=0.394 Sum_probs=90.1
Q ss_pred cCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC--------CCceEEEEEEehHHHHHHHhcCccCceEEEE
Q 022388 81 WDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA--------TQTSWINLTFWDELAHVASQHVEKGQQIYIS 152 (298)
Q Consensus 81 ~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~--------~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~Vs 152 (298)
.+..|||+|+|+|+|++||+++++++|+++|.|+||+++.+ +.++||+|++||++|+.+.+ |+||++|+|+
T Consensus 124 rm~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~ 202 (301)
T 1se8_A 124 RMSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIM 202 (301)
T ss_dssp EEETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEE
T ss_pred chhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEE
Confidence 44578999999999999999999999999999999999743 25789999999999999999 9999999999
Q ss_pred EEeeeeeeecCCCcEEEEEEEEEEEEEEeecCCCC
Q 022388 153 GRLVSDVVESGDGQQQTYYKVVVQQLNFVERSSPS 187 (298)
Q Consensus 153 GrL~s~~~~dkdG~~r~~~eIva~~I~fl~~k~~s 187 (298)
|+|+++.|+|++|++++.++|+|++|.||..+...
T Consensus 203 GrL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 203 GRLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEEEEECC------CEEEEEEEEEEEECCC----
T ss_pred EEEeeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 99999999999999999999999999999876543
No 23
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.87 E-value=1.4e-22 Score=175.67 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=87.3
Q ss_pred cccCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC---------CCceEEEEEEehHH-HHHHHhcCccCce
Q 022388 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA---------TQTSWINLTFWDEL-AHVASQHVEKGQQ 148 (298)
Q Consensus 79 I~~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~---------~~t~wi~Vv~wg~l-Ae~~a~~LkKGD~ 148 (298)
+.-+...||+|+|||+|++||++|+++ ..+|+|+||+++.+ .+++||+|++||++ |+.+.+||+||++
T Consensus 15 ~~r~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~ 92 (164)
T 3k81_C 15 FMRCCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNV 92 (164)
T ss_dssp -----CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred hhHHhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCE
Confidence 666678899999999999999999998 79999999999432 36899999999999 9999999999999
Q ss_pred EEEEEEeeeeeeecCCCcEEEEE-EEEEE----EEEEeecCCC
Q 022388 149 IYISGRLVSDVVESGDGQQQTYY-KVVVQ----QLNFVERSSP 186 (298)
Q Consensus 149 V~VsGrL~s~~~~dkdG~~r~~~-eIva~----~I~fl~~k~~ 186 (298)
|+|+|+|+++.|+|++|++++.+ .|+|. .+.+|++++.
T Consensus 93 V~VeGrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~ 135 (164)
T 3k81_C 93 VCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRR 135 (164)
T ss_dssp EEECCEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC---
T ss_pred EEEEEEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCC
Confidence 99999999999999998766544 45555 7899987653
No 24
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.86 E-value=2.7e-21 Score=158.90 Aligned_cols=93 Identities=20% Similarity=0.148 Sum_probs=82.9
Q ss_pred cceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC------C-ceEEEEEEehHHHHHHHhcCccCceEEEEEEeeee
Q 022388 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT------Q-TSWINLTFWDELAHVASQHVEKGQQIYISGRLVSD 158 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~------~-t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~ 158 (298)
||+|+|+|+|++||++|+|++|.++|+|+||+++... + ..||+|++||++||.+ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 7999999999999999999999999999999986432 2 3359999999999998 999999999999999998
Q ss_pred eeecCCCcEEEEEEEEEEEEEEeecCC
Q 022388 159 VVESGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 159 ~~~dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
+ ++| +.++|+|++|++|+++.
T Consensus 80 s---~~G---~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 80 R---KDS---VKVKLHLQQARRIAGSM 100 (115)
T ss_dssp S---TTC---SSEEEEEEEEEECCCSC
T ss_pred C---CCC---CEEEEEEEEEEEcCCCC
Confidence 5 677 46899999999997654
No 25
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.85 E-value=2.5e-21 Score=156.18 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=78.6
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC------CCce-EEEEEEehHHHHHHHhcCccCceEEEEEEeee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTS-WINLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~------~~t~-wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
|.|+|+|+|+|++||++|++++|.++|+|+||+++.. .+++ ||+|++||++|| +.+ |+||++|+|+|+|++
T Consensus 6 m~Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~ 83 (103)
T 3k8a_A 6 FTNLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQ 83 (103)
T ss_dssp CCEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEE
T ss_pred cccEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEE
Confidence 4499999999999999999999999999999998753 1344 599999999999 655 999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEee
Q 022388 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIva~~I~fl~ 182 (298)
++|. |. .+.+++++|++++
T Consensus 84 rs~~---~~---~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 84 KSRR---SL---MPMLRIQNIKEYK 102 (103)
T ss_dssp SSSS---CC---CEEEEEEEEEECC
T ss_pred CccC---Cc---cEEEEEEEEEEcC
Confidence 9993 33 5889999999984
No 26
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.83 E-value=2.7e-20 Score=171.80 Aligned_cols=89 Identities=24% Similarity=0.354 Sum_probs=81.6
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC---------CceEEEEEEehHH--HHHHHhcCccCceEEEEE
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---------QTSWINLTFWDEL--AHVASQHVEKGQQIYISG 153 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~---------~t~wi~Vv~wg~l--Ae~~a~~LkKGD~V~VsG 153 (298)
.+|+|+|+||| +||++|+++ |+++|+|+||+++.+. +++||+|++||++ |+ ++++|+||++|+|+|
T Consensus 145 ~lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeG 221 (257)
T 4dni_A 145 SVNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNG 221 (257)
T ss_dssp CEEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEE
T ss_pred ccCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEE
Confidence 58999999999 999999999 9999999999997531 6899999999999 99 888899999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEE-EE
Q 022388 154 RLVSDVVESGDGQQQTYYKVV-VQ 176 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eIv-a~ 176 (298)
+|+++.|+|++|++++.++++ |+
T Consensus 222 rL~tr~~~D~~G~kr~~~~vI~V~ 245 (257)
T 4dni_A 222 RLRLSPQLEPSCNKHFYFPYIQVQ 245 (257)
T ss_dssp EEEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEeeeEEcCCCCEEEEEEEEEEE
Confidence 999999999999999888754 44
No 27
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.77 E-value=5.9e-19 Score=141.90 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=67.4
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC------CCceE-EEEEEehHHHHHHHhcCccCceEEEEEEeee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA------TQTSW-INLTFWDELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~------~~t~w-i~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
.||+|+|+|+|++||++|+|++|.++|.|+||+++.. .+++| |+|++||++||.+.+ +.||++|.|+|+|++
T Consensus 1 ~MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~t 79 (101)
T 3en2_A 1 AINRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLAR 79 (101)
T ss_dssp CCCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEE
T ss_pred CcCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEe
Confidence 3899999999999999999999999999999998753 13445 999999999999987 689999999999999
Q ss_pred eeeecC
Q 022388 158 DVVESG 163 (298)
Q Consensus 158 ~~~~dk 163 (298)
++|.++
T Consensus 80 rs~~s~ 85 (101)
T 3en2_A 80 KHRSSK 85 (101)
T ss_dssp CC----
T ss_pred CcCCCC
Confidence 999754
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.71 E-value=2.5e-17 Score=152.02 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=83.9
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEeh-HHHHHHHhcCccCceEEEEEEeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~-----~~t~wi~Vv~wg-~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
+++|+|+|+|+|++| |+|+|++|. ++.|+|++.... ..++|+.|++|| ++||.+.+||+||++|+|+|+|++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 679999999999999 999999884 677777777643 246788888999 999999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEEEEEEEEee
Q 022388 158 DVVESGDGQQQTYYKVVVQQLNFVE 182 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIva~~I~fl~ 182 (298)
|++++|++++.++|+|.++.-+.
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 77889999999999999887753
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.71 E-value=1.1e-16 Score=136.33 Aligned_cols=89 Identities=16% Similarity=0.241 Sum_probs=80.5
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC-----CCceEEEEEEeh-HHHHHHHhcCccCceEEEEEEeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-----TQTSWINLTFWD-ELAHVASQHVEKGQQIYISGRLVS 157 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~-----~~t~wi~Vv~wg-~lAe~~a~~LkKGD~V~VsGrL~s 157 (298)
+.+|+|+|+|+|+ ||+.+++. +..++.|+||+++.. .+++||+|.+|| ++|+.+.++|+||++|+|+|||++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 5699999999996 88889884 779999999999864 367899999995 899999999999999999999999
Q ss_pred eeeecCCCcEEEEEEEE
Q 022388 158 DVVESGDGQQQTYYKVV 174 (298)
Q Consensus 158 ~~~~dkdG~~r~~~eIv 174 (298)
..|.|++|++.|.+-++
T Consensus 120 n~~~d~~gkk~Y~~p~i 136 (148)
T 3stb_C 120 VPQYDGSMRKYYHYPVI 136 (148)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred ceeECCCCCEEeeccEE
Confidence 99999999999887665
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.23 E-value=0.0016 Score=52.08 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=52.5
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCC-CCceEEEEEEehHHH--HHHHhcCccCceEEEEEEeeeeeeecC
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSA-TQTSWINLTFWDELA--HVASQHVEKGQQIYISGRLVSDVVESG 163 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~-~~t~wi~Vv~wg~lA--e~~a~~LkKGD~V~VsGrL~s~~~~dk 163 (298)
-.++|+|+|.. ++.-+. ....+..|+|.++-.. .+.+++.|-++|+.+ +.+-+.|+.|+.|.|.|+|+...--|.
T Consensus 4 sn~vlvG~V~D-VQ~Gfl-~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIAD-VQHGFL-GAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEEE-EEEEEE-TTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEEE-eeeccc-ccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 35789999865 444333 3467999999996543 478899999999977 788999999999999999998875443
No 31
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.18 E-value=0.026 Score=43.92 Aligned_cols=80 Identities=25% Similarity=0.290 Sum_probs=55.3
Q ss_pred ceEEEEEEeCCCceEEE--cCCCc--EEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeeeec
Q 022388 87 NTVHLIGVVGTPIETKH--LPSGK--VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVES 162 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~--t~nGk--~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~~d 162 (298)
..|+++|+|..--..+. .++|. .+..+.|+ ++|--|++++|++.|+. .++.||.|.|.|+.+..
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~-----DeTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~---- 79 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK-----DDTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG---- 79 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEE-----ETTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE-----CCCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc----
Confidence 68999999986554444 34664 45555554 34779999999998876 69999999999977432
Q ss_pred CCCcEEEEEEEEEEEEEEeec
Q 022388 163 GDGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 163 kdG~~r~~~eIva~~I~fl~~ 183 (298)
.| .++|.+.+...|+.
T Consensus 80 -~~----~~el~~g~~~~i~k 95 (97)
T 3e0e_A 80 -YS----GLEISVDNIGIIEK 95 (97)
T ss_dssp -------CEEEEEEEEEEEEC
T ss_pred -CC----eEEEEECCCcEEEE
Confidence 12 46788887777653
No 32
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.075 Score=42.05 Aligned_cols=83 Identities=20% Similarity=0.385 Sum_probs=60.4
Q ss_pred ceEEEEEEeCCCceEEE--cCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeeeecCC
Q 022388 87 NTVHLIGVVGTPIETKH--LPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGD 164 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~--t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~~dkd 164 (298)
+.|+++|+|..--+.+. ..+|...-.+.+.+.+ ++--|++++|++.|.. .+++||.|.|.|+.+... .
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D---~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~----~ 84 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD---ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGY----Y 84 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE---TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECT----T
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC---CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEcc----C
Confidence 68999999986655554 3477655555555544 3456999999998887 799999999988876542 2
Q ss_pred CcEEEEEEEEEEEEEEeec
Q 022388 165 GQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 165 G~~r~~~eIva~~I~fl~~ 183 (298)
|. ++|.+.+...|+.
T Consensus 85 g~----~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 85 GG----LECTANYVEILKK 99 (105)
T ss_dssp SS----EEEEEEEEEEEEC
T ss_pred CC----EEEEeCCceEEEe
Confidence 33 6788888777765
No 33
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.80 E-value=0.018 Score=45.59 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=50.9
Q ss_pred ceEEEEEEeCCCceEE--EcCCC--cEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeee
Q 022388 87 NTVHLIGVVGTPIETK--HLPSG--KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 87 N~V~LIGrVg~dPelr--~t~nG--k~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
..|.++|.|..--+++ .+.+| ..++.+.|+- ++.-|++++|++.++.. ..|+.|+.|.|.|......|
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-----~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIAD-----DTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEE-----TTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEe-----CCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEcccc
Confidence 4679999998753555 45677 6777776663 34589999999987754 67999999999998754445
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=94.92 E-value=0.072 Score=42.62 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=46.7
Q ss_pred cceEEEEEEeCCCceEE--EcCCCc-EEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEE-EEeeee
Q 022388 86 TNTVHLIGVVGTPIETK--HLPSGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVSD 158 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr--~t~nGk-~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~Vs-GrL~s~ 158 (298)
.+.|.++|.|..--+.+ .+.+|+ .+..+.|+ +++--|++++|++.| +.++.|+.|+|. |++..+
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~-----D~TG~I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~ 79 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVG-----DETGRVKLTLWGKHA----GSIKEGQVVKIENAWTTAF 79 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE-----ETTEEEEEEEEGGGT----TCCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE-----eCCCEEEEEEECChh----hcCCCCCEEEEEeEEEEEe
Confidence 45789999987543323 566886 66666555 234569999999976 358999999999 877653
No 35
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.061 Score=42.83 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=50.1
Q ss_pred CcceEEEEEEeCCCceEEEcCC--C-cEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 85 LTNTVHLIGVVGTPIETKHLPS--G-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~n--G-k~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
.++..+|.|+|..--++|...+ | ..+..+.|+ + ++.-|++++|+++|+.+...|+.|+.++|++-
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~--D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 80 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL--D---TSGEIRATAFNDFATKFNEILQEGKVYYVSKA 80 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE--E---TTEEEEEEECHHHHHHHHHHSCSSSEEEEESC
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEE--C---CCCeEEEEECHHHHHHHHhhcccCcEEEECCc
Confidence 4677899999998777766543 3 245555543 2 23499999999999999999999999999973
No 36
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.97 E-value=0.24 Score=38.99 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=47.1
Q ss_pred CcceEEEEEEeCCCceEEEcCCCcE--EEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEE-EEeee
Q 022388 85 LTNTVHLIGVVGTPIETKHLPSGKV--LAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~nGk~--va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~Vs-GrL~s 157 (298)
.++.|+++|.|-.--+.+.+.+|.. ++...|+ ++|--|++++|++. +++||.|.|. |....
T Consensus 12 g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~-----DeTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 12 STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE-----DDTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE-----CSSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEEccccccccCCCeeEEEEEEEE-----cCCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 4677999999976555555668874 6666665 45668999999986 9999999999 77754
No 37
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.52 E-value=0.8 Score=37.25 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCcccCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHH---HHhcCccCceEEEEE
Q 022388 77 PEIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHV---ASQHVEKGQQIYISG 153 (298)
Q Consensus 77 ~~I~~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~---~a~~LkKGD~V~VsG 153 (298)
..+...-.-++.|.|+|.|..- . .+..+..|.|. +.|--|.|..|.+..+. -...++.|+.|.|.|
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~~---~---~~~~~~~~~ld-----D~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G 95 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRNI---S---RNATNVAYSVE-----DGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLG 95 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEEE---E---ECSSEEEEEEE-----CSSCEEEEEEECC--------CCSCCTTCEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEEE---E---ecCCeEEEEEE-----CCCCCEEEEEecccCCcccccccccCCCCEEEEEE
Confidence 4455556679999999999762 2 23456666664 34567999999864432 356799999999999
Q ss_pred EeeeeeeecCCCcEEEEEEEEEEEEEEeec
Q 022388 154 RLVSDVVESGDGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 154 rL~s~~~~dkdG~~r~~~eIva~~I~fl~~ 183 (298)
+++.. +|+ .+|.+..|..+..
T Consensus 96 ~v~~f-----~g~----~qi~~~~ir~v~d 116 (136)
T 4gop_B 96 TLKSF-----QNR----RSISSGHMRPVID 116 (136)
T ss_dssp EEEEE-----TTE----EEEEESEEEECSS
T ss_pred EEEEe-----CCE----EEEEEEEEEECCC
Confidence 99774 344 4577777777643
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=92.30 E-value=1 Score=48.63 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehH--HHHHHHhcCccCceEEEEEEeeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE--LAHVASQHVEKGQQIYISGRLVSDVVE 161 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~--lAe~~a~~LkKGD~V~VsGrL~s~~~~ 161 (298)
.-++.|++.|.|-. .+.+.+.+|+.+..|.|. +.++-|.|..|-+ ....+.+.+++|+.|.|.|.+..+.|.
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t-----d~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~ 88 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT-----DYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFV 88 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE-----CSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEE-----eCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCC
Confidence 34688999999876 889999999988777663 2366688888844 333456779999999999999988774
Q ss_pred cCCCcEEEEEEEEEEEEEEeecC
Q 022388 162 SGDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 162 dkdG~~r~~~eIva~~I~fl~~k 184 (298)
. + +.+.+..|.-+...
T Consensus 89 ~---~----~~~~~~~~~~~~~~ 104 (1041)
T 3f2b_A 89 R---D----LVIIANDLNEIAAN 104 (1041)
T ss_dssp T---E----EEEEEEEEEEECCC
T ss_pred c---c----eEEEeeeeEEeccc
Confidence 2 2 34667777776643
No 39
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=91.48 E-value=4.1 Score=31.78 Aligned_cols=82 Identities=17% Similarity=0.062 Sum_probs=57.4
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC---CceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT---QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~---~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
-|.|.|-|.|.|.. .+-+.+-. -...+|...|-.. -++|+-+-+-|++|-.+..|.+|=..|.|+|.|+++.-
T Consensus 6 gMLN~V~LEG~IeS---~kWS~kKT-GF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY~e 81 (110)
T 2hql_A 6 GMLNRVFLEGEIES---SCWSVKKT-GFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTYLE 81 (110)
T ss_dssp -CCEEEEEEEEEEE---EEECTTCS-EEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEEEE
T ss_pred ceEEEEEEeeeeeh---hcccccCc-eEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhHHH
Confidence 48899999999976 34443322 2223444555433 46788888889999999999999999999999998762
Q ss_pred ecCCCcEEEE
Q 022388 161 ESGDGQQQTY 170 (298)
Q Consensus 161 ~dkdG~~r~~ 170 (298)
.+.+.-.+.
T Consensus 82 -kkS~iWKTt 90 (110)
T 2hql_A 82 -RKSEIWKTT 90 (110)
T ss_dssp -TTTTEEEEE
T ss_pred -HhcccceeE
Confidence 245554433
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=90.39 E-value=1.3 Score=35.69 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=56.2
Q ss_pred CcccCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCce-EEEEEEehHHHHH--HHhcCccCceEEEEEE
Q 022388 78 EIPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAHV--ASQHVEKGQQIYISGR 154 (298)
Q Consensus 78 ~I~~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~-wi~Vv~wg~lAe~--~a~~LkKGD~V~VsGr 154 (298)
.+...-.-++.|.|+|.|..- . ....+..|.|. +.|. -|.|..|.+.... -...++.|+.|.|.|+
T Consensus 23 ~f~i~g~~i~~V~iVG~V~~~---~---~~~~~~~~~ld-----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~ 91 (132)
T 3kdf_D 23 VFRIGNVEISQVTIVGIIRHA---E---KAPTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGH 91 (132)
T ss_dssp CEEETTEECCEEEEEEEEEEE---E---ECSSEEEEEEE-----CSSSSCEEEEEEC---------CCCCTTCEEEEEEE
T ss_pred cEEECCEEEEEEEEEEEEEEE---E---EcCCeEEEEEE-----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEE
Confidence 344445568999999999762 2 22345556554 3456 8999999874432 3567999999999999
Q ss_pred eeeeeeecCCCcEEEEEEEEEEEEEEeec
Q 022388 155 LVSDVVESGDGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 155 L~s~~~~dkdG~~r~~~eIva~~I~fl~~ 183 (298)
|+.. +|+ .+|.+..|..++.
T Consensus 92 l~~f-----~g~----~qi~~~~ir~v~d 111 (132)
T 3kdf_D 92 LRSF-----QNK----KSLVAFKIMPLED 111 (132)
T ss_dssp EEEE-----TTE----EEEEEEEEEECSS
T ss_pred EEeE-----CCE----EEEEEEEEEEcCC
Confidence 9874 244 4477777777654
No 41
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=88.47 E-value=3.5 Score=39.99 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=60.1
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeh--HHHHHHHhcCccCceEEEEEEeeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD--ELAHVASQHVEKGQQIYISGRLVSDVVE 161 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg--~lAe~~a~~LkKGD~V~VsGrL~s~~~~ 161 (298)
+..-.+.+.|.|...|... ++|. +.|+|.. ...-++|++|. +....+...|..||.|.|-|.+..
T Consensus 282 ~~~~~~~v~G~V~~~P~~~--~GGH--V~f~l~d-----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~---- 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDI--EGGH--VFFEIDT-----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK---- 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEE--TTTE--EEEEEEE-----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET----
T ss_pred ccCceEEEEEEEecCcEec--cCce--EEEEEEc-----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC----
Confidence 4578899999999987654 4564 4566654 25679999999 456677788999999999999653
Q ss_pred cCCCcEEEEEEEEEEEEEEeecC
Q 022388 162 SGDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 162 dkdG~~r~~~eIva~~I~fl~~k 184 (298)
| +|.++.+..+.-.
T Consensus 349 ---g------tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 ---D------TINLEKIQIVELA 362 (402)
T ss_dssp ---T------EEEEEEEEEEECC
T ss_pred ---C------EEEEEEEEEcccC
Confidence 4 6788888887653
No 42
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=87.49 E-value=2.6 Score=37.74 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=63.4
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhc---CccCceEEEEEEeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQH---VEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~---LkKGD~V~VsGrL~s~~~ 160 (298)
.-+++|.++|.|...-..-...+|.......+.+++.......+.|.+--.....+.-- ...|..|.|.|.+....
T Consensus 83 hPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r- 161 (220)
T 3kf8_A 83 YPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWY- 161 (220)
T ss_dssp EEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECC-
T ss_pred cccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeec-
Confidence 34899999999987432221112434455667778776667788887766543222111 23699999999998642
Q ss_pred ecCCCcEEEEEEEEEEEEEEeecC
Q 022388 161 ESGDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 161 ~dkdG~~r~~~eIva~~I~fl~~k 184 (298)
.+.+...++.-+|.|+.|.++...
T Consensus 162 ~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 162 DSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CSTTTTSCCCEEEEEEEEEEEESS
T ss_pred cccccccccceEEEEEEEEEeccC
Confidence 111222233348999999999764
No 43
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=86.96 E-value=1.9 Score=37.90 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=47.2
Q ss_pred CcceEEEEEEeCCCceEEEcC--CC-cEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEE
Q 022388 85 LTNTVHLIGVVGTPIETKHLP--SG-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 85 mmN~V~LIGrVg~dPelr~t~--nG-k~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsG 153 (298)
.++.++|.|+|.+--++|... +| ..+..+.|+ +. +.-|++++|+++|+.....|+.|+.++|++
T Consensus 17 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~--De---~G~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 17 YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV--DE---SGEIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE--CS---SCEEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCceEEEEEEEEecccceeeCCCCCceEEEEEEE--CC---CCeEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 456789999999766656543 22 234444333 32 237999999999999999999999999998
No 44
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.30 E-value=1.9 Score=41.64 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=48.0
Q ss_pred cceEEEEEEeCCCceEEEcC--CCc-EEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEE
Q 022388 86 TNTVHLIGVVGTPIETKHLP--SGK-VLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGR 154 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~--nGk-~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGr 154 (298)
++..+|.|+|..--.+|... +|. .+..+.|+ + ++.-|++++|+++|+.+...|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~--D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL--D---DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE--C---SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE--c---CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 46789999999766666543 232 44455443 2 23389999999999999999999999999973
No 45
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=84.19 E-value=2.7 Score=38.12 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=55.8
Q ss_pred cccCcCCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCce-EEEEEEehHHHH--HHHhcCccCceEEEEEEe
Q 022388 79 IPWDKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS-WINLTFWDELAH--VASQHVEKGQQIYISGRL 155 (298)
Q Consensus 79 I~~~~~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~-wi~Vv~wg~lAe--~~a~~LkKGD~V~VsGrL 155 (298)
+...-.-++.|.|+|.|.. +. .+..+..|+|. +.|- -|.|..|.+..+ .....++.|+.|.|.|++
T Consensus 64 f~i~g~~i~~V~ivG~V~~---i~---~~~~~~~~~L~-----D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v 132 (270)
T 2pi2_A 64 FRIGNVEISQVTIVGIIRH---AE---KAPTNIVYKID-----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL 132 (270)
T ss_dssp EEETTEEESEEEEEEEEEE---EE---ECSSEEEEEEE-----CSSSSCEEEEEECC-------CCCCCTTCEEEEEEEE
T ss_pred EEECCEEEEEEEEEEEEEE---EE---eccceEEEEEE-----CCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEE
Confidence 3333445788999999876 11 13456666664 3455 799999976433 234569999999999999
Q ss_pred eeeeeecCCCcEEEEEEEEEEEEEEeec
Q 022388 156 VSDVVESGDGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 156 ~s~~~~dkdG~~r~~~eIva~~I~fl~~ 183 (298)
+... |+ .+|.+..|..+..
T Consensus 133 ~~f~-----g~----~qi~i~~ir~v~d 151 (270)
T 2pi2_A 133 RSFQ-----NK----KSLVAFKIMPLED 151 (270)
T ss_dssp EEET-----TE----EEEEEEEEEECSC
T ss_pred EecC-----Ce----eEEEEEEEEecCC
Confidence 8642 33 4577888887654
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=84.01 E-value=10 Score=37.35 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=56.6
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeh-------HHHHHHHhcCccCceEEEEEEeeeee
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-------ELAHVASQHVEKGQQIYISGRLVSDV 159 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg-------~lAe~~a~~LkKGD~V~VsGrL~s~~ 159 (298)
..|+|.|+|.+ +|.. |+.++.+.|. +. +..+.|++-. +.....+..|..||.|.|+|.+....
T Consensus 37 ~~V~v~GwV~~---~R~~--g~~l~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~ 106 (487)
T 1eov_A 37 KEVLFRARVHN---TRQQ--GATLAFLTLR-QQ----ASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVD 106 (487)
T ss_dssp CEEEEEEEEEE---EEEC--SSSEEEEEEE-ET----TEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECS
T ss_pred CEEEEEEEEEE---eecc--CCccEEEEEE-EC----CccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 46999999976 4543 4433433333 22 2467777742 22223456799999999999997664
Q ss_pred eecCCCcEEEEEEEEEEEEEEeecCC
Q 022388 160 VESGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 160 ~~dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
-..+++ ..-.++|.|++|.+|....
T Consensus 107 ~~~~~~-~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 107 EPIKSA-TVQNLEIHITKIYTISETP 131 (487)
T ss_dssp SCCTTS-SEEEEEEEEEEEEEEECCC
T ss_pred CCCcCC-CCCcEEEEEEEEEEeeccc
Confidence 222222 2346999999999998643
No 47
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=82.95 E-value=1.8 Score=47.56 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=41.3
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeeeecCCCc
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQ 166 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~~dkdG~ 166 (298)
..|.+.|-|.. .+.+.|++|+.++.++|. +.+.-+.|++|.+.-+.....|..|..|.|.|+++.+ +
T Consensus 1043 ~~v~v~G~v~~-~~~~~Tk~G~~maf~tle-----D~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~------~- 1109 (1220)
T 2hpi_A 1043 PKVLLSGMVEE-VVRKPTRSGGMMARFTLS-----DETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKG------E- 1109 (1220)
T ss_dssp CEEEEEEEECC-C------------CEEEE-----ETTEEEEEC-------------CTTCEEEEEEEEC----------
T ss_pred CeEEEEEEEEE-EEEeecCCCCeEEEEEEE-----ECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEEC------C-
Confidence 34788888886 566677889989988887 3456699999999989888999999999999999742 1
Q ss_pred EEEEEEEEEEEEEEeec
Q 022388 167 QQTYYKVVVQQLNFVER 183 (298)
Q Consensus 167 ~r~~~eIva~~I~fl~~ 183 (298)
.+.|+|++|.-+..
T Consensus 1110 ---~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1110 ---ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp -----CEEEEEEEEHHH
T ss_pred ---CcEEEEeeeecHHH
Confidence 25788988877643
No 48
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=82.74 E-value=9.8 Score=32.06 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=54.2
Q ss_pred CCcceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH---HHHHHhcCccCceEEEEEEeeeeee
Q 022388 84 ELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL---AHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l---Ae~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
.-++.|.|+|.|..- ... . + +..+.+++.. ...|.|++|-+. +......+..|+.|.|.|.|++..
T Consensus 45 ~PI~~V~IvGiVv~~---~~~-~-~---~~~ytIDD~T--G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr- 113 (159)
T 3kf6_A 45 FPIRWIQIVGYIAAI---DIY-E-G---KHVLTVDDCS--GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR- 113 (159)
T ss_dssp EEECEEEEEEEEEEE---EEE-T-T---EEEEEEECSS--SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS-
T ss_pred eEEEEEEEEEEEEEE---EEe-C-C---EEEEEEecCC--CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC-
Confidence 448999999999872 211 1 1 1334444432 237999999764 223344589999999999997742
Q ss_pred ecCCCcEEEEEEEEEEEEEEeec
Q 022388 161 ESGDGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 161 ~dkdG~~r~~~eIva~~I~fl~~ 183 (298)
|+ .+|.|+.|..++.
T Consensus 114 ----~~----rqI~~~~i~~v~d 128 (159)
T 3kf6_A 114 ----SE----VELIAQSFEELRD 128 (159)
T ss_dssp ----SS----CEEEEEEEEEECS
T ss_pred ----CE----EEEEEEEEEECCC
Confidence 23 4688999998864
No 49
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=78.72 E-value=15 Score=28.56 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=42.7
Q ss_pred cceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEE-EEeee
Q 022388 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYIS-GRLVS 157 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~Vs-GrL~s 157 (298)
...|.++|.|-.-- ...+|..+....|+ ++|--|++++|++. ....++.|+.|.|. |....
T Consensus 15 ~~~v~v~~~V~~~~---~~~~~~~~~~~~l~-----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~ 76 (109)
T 2kbn_A 15 GQWANLKAKVIQLW---ENTHESISQVGLLG-----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGE 76 (109)
T ss_dssp TCEEEEEEEEEEEE---ECCCSSEEEEEEEE-----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEeE---cCCCCeEEEEEEEE-----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEE
Confidence 57899999997632 23345555444343 45678999999943 34579999999999 67665
No 50
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=76.42 E-value=13 Score=36.82 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=54.2
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH------HHHHHhcCccCceEEEEEEeeeeee
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL------AHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l------Ae~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
..|+|.|+|.. +|.. |+.++.+.|. +. +.-+.|++-.+. -+.+...|..||.|.|+|.+...
T Consensus 56 ~~V~v~Grv~~---~R~~--gkk~~F~~Lr-D~----sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t-- 123 (521)
T 3bju_A 56 ITLKVAGRIHA---KRAS--GGKLIFYDLR-GE----GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKT-- 123 (521)
T ss_dssp CCEEEEEEEEE---EEES--SSSEEEEEEE-ET----TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEEC--
T ss_pred cEEEEEEEEEE---EecC--CCCcEEEEEE-EC----CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEec--
Confidence 36999999976 4543 5334444443 22 256888875432 12234569999999999999754
Q ss_pred ecCCCcEEEEEEEEEEEEEEeecC
Q 022388 161 ESGDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 161 ~dkdG~~r~~~eIva~~I~fl~~k 184 (298)
+.|+ ++|.|++|.+|...
T Consensus 124 --~~ge----~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 124 --KKGE----LSIIPYEITLLSPC 141 (521)
T ss_dssp --TTCC----EEEEEEEEEEEECC
T ss_pred --CCCC----EEEEEeEEEEeecC
Confidence 3454 89999999999864
No 51
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=75.70 E-value=7.8 Score=32.28 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=45.0
Q ss_pred CCcceEEEEEEeCCCceEE---EcC--CC--------cEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEE
Q 022388 84 ELTNTVHLIGVVGTPIETK---HLP--SG--------KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIY 150 (298)
Q Consensus 84 ~mmN~V~LIGrVg~dPelr---~t~--nG--------k~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~ 150 (298)
..++.++|+|+|-..-+.+ ... +| ..++...|+ ++|--|.+++|++.++. |+.||.|.
T Consensus 24 pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg-----DeTG~I~ftlW~e~~~~----l~~Gd~v~ 94 (145)
T 1wjj_A 24 PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG-----DETGCILFTARNDQVDL----MKPGATVI 94 (145)
T ss_dssp TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE-----CSSCEEEEEECTTHHHH----TCTTCEEE
T ss_pred CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE-----cCCcEEEEEEecCCcCc----CCCCCEEE
Confidence 4577899999997543333 221 33 246666555 57889999999987653 78999999
Q ss_pred EEEEee
Q 022388 151 ISGRLV 156 (298)
Q Consensus 151 VsGrL~ 156 (298)
|.+-..
T Consensus 95 i~na~v 100 (145)
T 1wjj_A 95 LRNSRI 100 (145)
T ss_dssp EEEEEE
T ss_pred EeccEE
Confidence 987543
No 52
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=75.05 E-value=7.3 Score=34.91 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=43.0
Q ss_pred CceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeeee--cCCCcEEEEEEEEEEEEEEee
Q 022388 123 QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVE--SGDGQQQTYYKVVVQQLNFVE 182 (298)
Q Consensus 123 ~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~~--dkdG~~r~~~eIva~~I~fl~ 182 (298)
-+.-+.|.+.+++ .+.++.||.|.|.|-+...... .+.+...+.+.|.|.+|..++
T Consensus 209 ~Prsi~v~l~~dL----vd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 209 LPRQLEIILEDDL----VDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCCEEEEEEEGGG----TTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CCcEEEEEEccCc----cCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 4578999999986 4678999999999999876643 234456777888888888764
No 53
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=74.22 E-value=22 Score=34.33 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHH--HHHhcCccCceEEEEEEeeeeeee-cC
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAH--VASQHVEKGQQIYISGRLVSDVVE-SG 163 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe--~~a~~LkKGD~V~VsGrL~s~~~~-dk 163 (298)
..|+|.|+|.+ +|.. |+.++.+.|. +. +..+.|++-.+..+ ... .|..||.|.|+|.+....-. .+
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~-~l~~~~~v~v~G~v~~~~~~~~~ 80 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFILR-DG----TGFLQVLLMDKLCQTYDAL-TVNTECTVEIYGAIKEVPEGKEA 80 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEEE-CS----SCEEEEEEEGGGGSSHHHH-HCCTTCEEEEEEEEEECC-----
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEEE-EC----CceEEEEECCcchhHHHHh-cCCCCCEEEEEEEEEecCCCcCC
Confidence 36999999977 4543 4434444333 22 33588877644321 122 59999999999999764310 12
Q ss_pred CCcEEEEEEEEEEEEEEeec
Q 022388 164 DGQQQTYYKVVVQQLNFVER 183 (298)
Q Consensus 164 dG~~r~~~eIva~~I~fl~~ 183 (298)
.| .++|.|+++.++..
T Consensus 81 ~g----~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 81 PN----GHELIADFWKIIGN 96 (435)
T ss_dssp -T----TEEEEEEEEEEEEC
T ss_pred CC----cEEEEEEEEEEeec
Confidence 23 38999999999986
No 54
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=74.14 E-value=25 Score=33.81 Aligned_cols=74 Identities=14% Similarity=0.317 Sum_probs=51.6
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCc-cCceEEEEEEeeeeeeecCCC
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVE-KGQQIYISGRLVSDVVESGDG 165 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~Lk-KGD~V~VsGrL~s~~~~dkdG 165 (298)
..|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-. ..|. .||.|.|+|.+.... ...|
T Consensus 14 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D~----~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~--~~~~ 73 (422)
T 1n9w_A 14 QEVELLGFLHW---RRDL--GR-IQFLLLR-DR----SGVVQVVTGG-------LKLPLPESALRVRGLVVENA--KAPG 73 (422)
T ss_dssp SEEEEEEEEEE---EEEC--SS-EEEEEEE-ET----TEEEEEEEES-------CCCCCTTCEEEEEEEEEECT--TSTT
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CEEEEEEEEc-------cccCCCCCEEEEEEEEEecC--CCCc
Confidence 46999999977 4543 54 4433333 22 3447777653 6799 999999999997653 1223
Q ss_pred cEEEEEEEEEEEEEEeecC
Q 022388 166 QQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 166 ~~r~~~eIva~~I~fl~~k 184 (298)
+ ++|.|++|.++...
T Consensus 74 ~----~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 74 G----LEVQAKEVEVLSPA 88 (422)
T ss_dssp S----EEEEEEEEEEEECC
T ss_pred c----EEEEEeEEEEeccC
Confidence 3 89999999999864
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=74.00 E-value=19 Score=34.76 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehH--HHHHHHhcCccCceEEEEEEeeeeeeecCC
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE--LAHVASQHVEKGQQIYISGRLVSDVVESGD 164 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~--lAe~~a~~LkKGD~V~VsGrL~s~~~~dkd 164 (298)
..|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-.+ ..+ .+..|..||.|.|+|.+....- ..
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D~----~g~iQ~v~~~~~~~~~-~~~~l~~~~~v~v~G~v~~~~~--~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-DK----TGLGQVVVDKNSSAFG-ISQELTQESVIQVRGIVKADKR--AP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEECTTSTTHH-HHTTCCTTCEEEEEEEEEECSS--SG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEeCChHHHH-HHHhCCCCCEEEEEEEEEecCC--CC
Confidence 46999999977 4543 44 4433333 22 34578777543 122 2367999999999999976541 12
Q ss_pred CcEEEEEEEEEEEEEEeecC
Q 022388 165 GQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 165 G~~r~~~eIva~~I~fl~~k 184 (298)
|+ ++|.|+++.+|...
T Consensus 83 ~~----~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RG----IELHAEEITLLSKA 98 (429)
T ss_dssp GG----EEEEEEEEEEEECC
T ss_pred cc----EEEEEeEEEEeccC
Confidence 33 89999999999865
No 56
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=73.66 E-value=40 Score=33.58 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=53.2
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH-H---HHHHhcCccCceEEEEEEeeeeeeec
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-A---HVASQHVEKGQQIYISGRLVSDVVES 162 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l-A---e~~a~~LkKGD~V~VsGrL~s~~~~d 162 (298)
..|+|.|+|.. +|.. |+ ++.+.| ++. +.-+.|++-.+. . -...+.|..||.|.|+|.+.. .
T Consensus 87 ~~V~v~GwV~~---~R~~--Gk-~~Fi~L--rD~---sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~----t 151 (529)
T 4ex5_A 87 LEVAIAGRMML---KRVM--GK-ASFATV--QDG---SGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFR----T 151 (529)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEE--ECS---SCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEE----C
T ss_pred cEEEEEEEEEe---eecC--CC-eEEEEE--EeC---CeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEE----c
Confidence 36999999976 4543 54 333333 222 246777775542 1 123456999999999999975 3
Q ss_pred CCCcEEEEEEEEEEEEEEeecC
Q 022388 163 GDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 163 kdG~~r~~~eIva~~I~fl~~k 184 (298)
+.|+ ++|.|++|.+|...
T Consensus 152 ~~ge----lel~~~~i~vLs~a 169 (529)
T 4ex5_A 152 NKGE----LSVKCTQLRLLAKA 169 (529)
T ss_dssp TTSC----EEEEEEEEEEEECC
T ss_pred CCCc----EEEEEEEEEEEecC
Confidence 4564 89999999999764
No 57
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=72.97 E-value=35 Score=32.92 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=54.0
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH----HHHHHhcCccCceEEEEEEeeeeeeec
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l----Ae~~a~~LkKGD~V~VsGrL~s~~~~d 162 (298)
..|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-.+. +-..+..|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~lr-D~----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~--~ 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWIR-DS----TGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADE--R 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT--T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecC--C
Confidence 46999999987 4543 54 4433333 22 345888875432 112346799999999999997653 1
Q ss_pred CCCcEEEEEEEEEEEEEEeecC
Q 022388 163 GDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 163 kdG~~r~~~eIva~~I~fl~~k 184 (298)
..|+ ++|.|++|.+|...
T Consensus 84 ~~~~----~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGG----AEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGG----EEEEEEEEEEEECC
T ss_pred CCcc----EEEEEeEEEEeecC
Confidence 1233 89999999999865
No 58
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=71.36 E-value=20 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=40.2
Q ss_pred eEEEEEEeC--CCceEEEcC-CCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEe
Q 022388 88 TVHLIGVVG--TPIETKHLP-SGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRL 155 (298)
Q Consensus 88 ~V~LIGrVg--~dPelr~t~-nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL 155 (298)
.|.++|.|. .++..-... +|+....-.+...+. ...-++|++||+.|+.+. ...|+.|.+.|--
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~--sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~ 206 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDT--SGKVVTATLWGEDADKFD--GSRQPVLAIKGAR 206 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECT--TCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEE
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECC--CCCEEEEEEEchhhhhcc--cCCCCEEEEEEEE
Confidence 588999996 333332333 566544444444332 123599999999998753 5778877777643
No 59
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=71.25 E-value=46 Score=32.74 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=53.3
Q ss_pred eEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehH-HHH---HHHhcCccCceEEEEEEeeeeeeecC
Q 022388 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE-LAH---VASQHVEKGQQIYISGRLVSDVVESG 163 (298)
Q Consensus 88 ~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~-lAe---~~a~~LkKGD~V~VsGrL~s~~~~dk 163 (298)
.|+|.|+|.. +|.. |+ ++ |...-+. +..+.|++-.+ +.+ .....|..||.|.|+|.+... +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~-F~~LrD~----sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~----~ 122 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AG-FAHIQDV----TGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKT----K 122 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EE-EEEEEET----TEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEEC----T
T ss_pred EEEEEEEEEE---EecC--CC-cE-EEEEEEC----CEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeC----C
Confidence 6999999977 4543 44 33 4232222 24688887644 221 233679999999999999754 3
Q ss_pred CCcEEEEEEEEEEEEEEeecC
Q 022388 164 DGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 164 dG~~r~~~eIva~~I~fl~~k 184 (298)
.|+ ++|.|++|.+|...
T Consensus 123 ~ge----~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 123 VGE----LSIKVSSYEFLTKA 139 (493)
T ss_dssp TCC----EEEEEEEEEEEECC
T ss_pred CCc----EEEEEEEEEEcccc
Confidence 454 89999999999864
No 60
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=70.72 E-value=19 Score=35.05 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=54.1
Q ss_pred cceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeh-HHHH-HHHhcCccCceEEEEEEeeeeeeecC
Q 022388 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-ELAH-VASQHVEKGQQIYISGRLVSDVVESG 163 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg-~lAe-~~a~~LkKGD~V~VsGrL~s~~~~dk 163 (298)
=..|+|.|+|.+ +|. .|+.++.+.|. + .+..+.|++-. ++.+ ..+..|..||.|.|+|.+....-...
T Consensus 30 g~~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr--D---~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~ 99 (456)
T 3m4p_A 30 GKLVTFKGWAYH---IRK--ARKTLIFVELR--D---GSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNH 99 (456)
T ss_dssp SSEEEEEEEEEE---EEC--CSSSEEEEEEE--C---SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSC
T ss_pred CCEEEEEEEEEE---Eec--CCCceEEEEEE--e---CCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCccc
Confidence 357999999976 343 34445544443 2 22358887765 2211 12357999999999999975431111
Q ss_pred C------CcEEEEEEEEEEEEEEeecC
Q 022388 164 D------GQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 164 d------G~~r~~~eIva~~I~fl~~k 184 (298)
+ |+ ++|.|++|.+|...
T Consensus 100 ~~~~~t~g~----~El~~~~i~vl~~a 122 (456)
T 3m4p_A 100 PPEIADILN----LEMQVTEWKVIGES 122 (456)
T ss_dssp CCSCTTBCS----SEEEEEEEEEEECC
T ss_pred CcccCCCCc----EEEEEeEEEEEecC
Confidence 1 33 89999999999764
No 61
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=70.48 E-value=37 Score=32.85 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=54.6
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH----HHHHHhcCccCceEEEEEEeeeeeeec
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----AHVASQHVEKGQQIYISGRLVSDVVES 162 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l----Ae~~a~~LkKGD~V~VsGrL~s~~~~d 162 (298)
..|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-.+. .-..+..|..||.|.|+|.+.... .
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D~----~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~--~ 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-DR----DGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTP--K 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-ET----TEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECT--T
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCC--C
Confidence 47999999977 4443 44 4433333 22 245888776542 123456799999999999997543 1
Q ss_pred CCCcEEEEEEEEEEEEEEeecCC
Q 022388 163 GDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 163 kdG~~r~~~eIva~~I~fl~~k~ 185 (298)
..|+ ++|.|++|.+|....
T Consensus 84 ~~~~----~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKLG----FEILPEKIVVLNRAE 102 (438)
T ss_dssp STTS----EEEEEEEEEEEECBC
T ss_pred CCCc----EEEEEEEEEEEecCC
Confidence 2243 899999999998653
No 62
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=67.08 E-value=29 Score=34.94 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=54.7
Q ss_pred eEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHH--HHHhcCccCceEEEEEEeeeeeee--c-
Q 022388 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAH--VASQHVEKGQQIYISGRLVSDVVE--S- 162 (298)
Q Consensus 88 ~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe--~~a~~LkKGD~V~VsGrL~s~~~~--d- 162 (298)
.|+|.|+|.+ +|.. |+ ++.+.|. ++ +..+.|++-.+..+ ..+..|..|+.|.|+|.+..+.-. +
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~ 85 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMR-DR----EGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINR 85 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-ET----TEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-EC----CeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccc
Confidence 6999999976 4543 43 3333333 22 34588877543222 234679999999999999866321 1
Q ss_pred --CCCcEEEEEEEEEEEEEEeecCC
Q 022388 163 --GDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 163 --kdG~~r~~~eIva~~I~fl~~k~ 185 (298)
+.|+ ++|.|++|.+|....
T Consensus 86 ~~~~ge----iEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 86 DMATGE----IEVLASSLTIINRAD 106 (585)
T ss_dssp TSTTTT----EEEEEEEEEEEECCC
T ss_pred cCCCcc----EEEEEeEEEEEeccC
Confidence 3455 899999999998653
No 63
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=66.73 E-value=46 Score=32.85 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=52.7
Q ss_pred eEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH----H-HHHHhcCccCceEEEEEEeeeeeeec
Q 022388 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL----A-HVASQHVEKGQQIYISGRLVSDVVES 162 (298)
Q Consensus 88 ~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l----A-e~~a~~LkKGD~V~VsGrL~s~~~~d 162 (298)
.|+|.|+|.. +|.. |+ ++ |...-+. +..+.|++-.+. + +.....|..||.|.|+|.+...
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~-F~~LrD~----sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~---- 130 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-AS-FVTLQDV----GGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT---- 130 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EE-EEEEEET----TEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEEC----
T ss_pred EEEEEEEEEE---EecC--CC-cE-EEEEEEC----CeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEec----
Confidence 6999999977 4543 44 33 3222222 246888775431 1 2134679999999999999754
Q ss_pred CCCcEEEEEEEEEEEEEEeecC
Q 022388 163 GDGQQQTYYKVVVQQLNFVERS 184 (298)
Q Consensus 163 kdG~~r~~~eIva~~I~fl~~k 184 (298)
+.|+ ++|.|++|.+|...
T Consensus 131 ~~ge----~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 131 QTGE----LSIHCTELRLLTKA 148 (504)
T ss_dssp TTCC----EEEEEEEEEEEECC
T ss_pred CCce----EEEEEEEEEEeccc
Confidence 3454 89999999999864
No 64
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=65.06 E-value=28 Score=34.88 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=55.7
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEeh-----HHHHHHHhcCccCceEEEEEEeeeeeee
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWD-----ELAHVASQHVEKGQQIYISGRLVSDVVE 161 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg-----~lAe~~a~~LkKGD~V~VsGrL~s~~~~ 161 (298)
..|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-. +.....+..|..|+.|.|+|.+....-.
T Consensus 63 ~~V~v~Gwv~~---~R~~--gk-l~Fi~Lr-D~----~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~ 131 (548)
T 3i7f_A 63 KTVTIRARVQA---VRGK--GN-MVFLFLR-KG----IYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKP 131 (548)
T ss_dssp CEEEEEEEEEE---EEEC--SS-EEEEEEE-ET----TEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSC
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcc
Confidence 57899999976 4443 43 4544443 22 2477777764 1222345679999999999999875421
Q ss_pred cCCCcEEEEEEEEEEEEEEeecCC
Q 022388 162 SGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 162 dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
.+ +.+.-.++|.|++|.+|....
T Consensus 132 ~~-~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 132 IE-KATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp CT-TSSSCSEEEEEEEEEEEECCC
T ss_pred cc-cCCCCcEEEEEeEEEEEecCC
Confidence 11 111224899999999998753
No 65
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=61.60 E-value=30 Score=34.76 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=53.9
Q ss_pred eEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHH-HHHHHhcCccCceEEEEEEeeeeeeec---C
Q 022388 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDEL-AHVASQHVEKGQQIYISGRLVSDVVES---G 163 (298)
Q Consensus 88 ~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~l-Ae~~a~~LkKGD~V~VsGrL~s~~~~d---k 163 (298)
.|+|.|+|.+ +|.. |+ ++.+.|. +. +..+.|++-.+. +-..+..|..||.|.|+|.+..+.-.+ +
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D~----~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~ 86 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLR-DR----EGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLA 86 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-ET----TEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTST
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEE-EC----CeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCC
Confidence 6999999976 4543 43 3333332 22 245777764431 112346799999999999998764111 2
Q ss_pred CCcEEEEEEEEEEEEEEeecCC
Q 022388 164 DGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 164 dG~~r~~~eIva~~I~fl~~k~ 185 (298)
.|+ ++|.|++|.+|....
T Consensus 87 ~ge----~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 87 TGR----VEVELSALEVLAEAK 104 (580)
T ss_dssp TTT----EEEEEEEEEEEECCC
T ss_pred Ccc----EEEEEeEEEEeccCc
Confidence 354 899999999998653
No 66
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=55.19 E-value=10 Score=31.48 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=42.5
Q ss_pred cceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCC------------Cce--------EEEEEEehHHHHHHHhcCcc
Q 022388 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSAT------------QTS--------WINLTFWDELAHVASQHVEK 145 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~------------~t~--------wi~Vv~wg~lAe~~a~~LkK 145 (298)
..-+-|+|.|.+.+ .. ++ .+.|.|.++-+ ... -+.|++|+.-|..+.++|+.
T Consensus 14 ~~F~Dl~~qVv~~~---~~-~~----~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~ar~~lk~ 85 (143)
T 4hik_A 14 HQRCSFYAQVIKTW---YS-DK----NFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKE 85 (143)
T ss_dssp SCEEEEEEEEEEEE---EC-SS----CEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHHTTTCCT
T ss_pred CCeEEEEEEEEEEE---cC-CC----eEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHHHHHhhCCC
Confidence 45678888888732 11 23 36677776521 112 37999999999999999999
Q ss_pred CceEEEE
Q 022388 146 GQQIYIS 152 (298)
Q Consensus 146 GD~V~Vs 152 (298)
||.|.+.
T Consensus 86 Gd~v~L~ 92 (143)
T 4hik_A 86 GDYVVMK 92 (143)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999875
No 67
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=51.38 E-value=20 Score=32.28 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=39.8
Q ss_pred CceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeeeecCCCcEEEEEEEEEEEEEEee
Q 022388 123 QTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVESGDGQQQTYYKVVVQQLNFVE 182 (298)
Q Consensus 123 ~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~~dkdG~~r~~~eIva~~I~fl~ 182 (298)
-+.-+.|.+.+++ .+.++.||.|.|.|-+.... ..+...+.+.|.|.+|....
T Consensus 196 ~Prsi~V~l~~dL----vd~~~PGDrV~vtGI~~~~~---~~~~~~~~~~l~a~~I~~~~ 248 (279)
T 1ltl_A 196 QPRQITVVLEDDL----VDTLTPGDIVRVTGTLRTVR---DERTKRFKNFIYGNYTEFLE 248 (279)
T ss_dssp CCCEEEEEEEGGG----TTCCCTTCEEEEEEEEEEEE---ETTTTEEEEEEEEEECCBC-
T ss_pred CCeEEEEEEcccc----cCccCCCCEEEEEEEEEEee---CCCCceEEEEEEEEEEEEec
Confidence 4568999999985 56789999999999998764 23345666778887776643
No 68
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=46.39 E-value=37 Score=32.41 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=39.2
Q ss_pred eEEEEEEeCC--CceEEEcC-CCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHh--cCccCceEEEEEE
Q 022388 88 TVHLIGVVGT--PIETKHLP-SGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQ--HVEKGQQIYISGR 154 (298)
Q Consensus 88 ~V~LIGrVg~--dPelr~t~-nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~--~LkKGD~V~VsGr 154 (298)
.|.++|.|.. ++...... +|+....-.|...+. ...-++|++||+.|+.+.. ....|+.|.|.|-
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~--sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~ 204 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQ--GNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGV 204 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECT--TCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESC
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeC--CCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeE
Confidence 4778888864 33222232 465333333333222 2247999999999987542 2678888888774
No 69
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=38.71 E-value=1.2e+02 Score=30.86 Aligned_cols=81 Identities=12% Similarity=0.187 Sum_probs=52.4
Q ss_pred ceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehH----HHHHHHhcCccCceEEEEEEeeeeeee-
Q 022388 87 NTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDE----LAHVASQHVEKGQQIYISGRLVSDVVE- 161 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~----lAe~~a~~LkKGD~V~VsGrL~s~~~~- 161 (298)
..|+|.|+|.+- | ++. | |..++. +..+.|++-.+ .+-..+..|..|+.|.|+|.+..+.-.
T Consensus 25 ~~V~l~GwV~~~---R---~~~----F-i~LrD~---~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 90 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----F-LVLRDF---DGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQ 90 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----E-EEEECS---SCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTC
T ss_pred CEEEEEEEeeee---c---CeE----E-EEEEeC---CcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccc
Confidence 479999999862 2 222 3 223332 24567766432 222345679999999999999865311
Q ss_pred ----cCCCcEEEEEEEEEEEEEEeecCC
Q 022388 162 ----SGDGQQQTYYKVVVQQLNFVERSS 185 (298)
Q Consensus 162 ----dkdG~~r~~~eIva~~I~fl~~k~ 185 (298)
.+.|+ ++|.|++|.+|....
T Consensus 91 ~n~~~~tge----iEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 91 ENPKMPTGE----IEIKVKTAELLNACK 114 (617)
T ss_dssp CCTTSTTTT----EEEEEEEEEEEECBC
T ss_pred cCccCCCCc----EEEEEeEEEEeecCC
Confidence 12344 899999999997654
No 70
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=37.05 E-value=33 Score=31.03 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=45.2
Q ss_pred cceEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEEEeeeeee
Q 022388 86 TNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISGRLVSDVV 160 (298)
Q Consensus 86 mN~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsGrL~s~~~ 160 (298)
-..|.++|-|..--..+.+.+...++.|+|.-... .-+.|.+|.+..+.+=.-.+.||.|.+.. ++...|
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~----~gl~v~iF~~~~~~LP~v~~~GDII~l~~-vki~~~ 84 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN----VKLTCLLFSGNYEALPIIYKNGDIVRFHR-LKIQVY 84 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----CEEEEEEEESSGGGSCCCCSTTCEEEEEE-EEEEEE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----CCEEEEEECCChHHCCCCCCCCCEEEEEE-EEEEEE
Confidence 45799999996433334444446677777765432 23999999875555444449999998885 333345
No 71
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=36.87 E-value=36 Score=29.63 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=41.4
Q ss_pred eEEEEEEeCCCceEEEcCCCcEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcCccCceEEEEE
Q 022388 88 TVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHVEKGQQIYISG 153 (298)
Q Consensus 88 ~V~LIGrVg~dPelr~t~nGk~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~LkKGD~V~VsG 153 (298)
...++|-|....+.+.+.+|+.++.+.|.-=. +....+.+-+||+..+. ...+..|+.|.|-.
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~--~~~~~V~lfLFg~a~~~-~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK--DLDKYISLFLFGDVHKE-HWKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS--STTCCEEEEECHHHHHH-HTTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC--CCCcEEEEEEechHHHH-hcCcCCceEEEEEC
Confidence 56788999988888888899988877665211 22356899999996666 55699999998854
No 72
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=25.19 E-value=11 Score=32.34 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCCCCCCCCceeeecCCCCChhhHhhhhhh
Q 022388 242 PDFKHKDTGEALWVEGRYNPGWVKSQLAIL 271 (298)
Q Consensus 242 pDfK~k~t~~~lwl~~~~~p~wv~~~l~~~ 271 (298)
--|+|.+||-.||..+...|.|...|.|..
T Consensus 132 fRL~H~~tg~yL~~~~~~lp~w~~~Q~EV~ 161 (187)
T 1t9f_A 132 FKLRHAVTGSYLSLSGQQFGRPIHGQREVV 161 (187)
T ss_dssp EEEEETTTCCEEEEEEEECCTTSTTCEEEE
T ss_pred EEEEECCcCeEEecCCcccCCCCCCceEEE
Confidence 457899999999999988899999888754
No 73
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=25.05 E-value=10 Score=32.92 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCceeeecCCCCChhhHhhhhh
Q 022388 240 KYPDFKHKDTGEALWVEGRYNPGWVKSQLAI 270 (298)
Q Consensus 240 k~pDfK~k~t~~~lwl~~~~~p~wv~~~l~~ 270 (298)
..--|+|..||-.||-.+...|.|..+|.|.
T Consensus 142 ~~fRL~H~~T~~yL~sh~~~lp~wg~~Q~EV 172 (199)
T 3mal_A 142 QRVRLQHIDTSGYLHSHDKKYQRIAGGQQEV 172 (199)
T ss_dssp CEEEEEETTTCCEEEEEEEECCSSSTTCEEE
T ss_pred CeEEEEECCCCeEEeeCCCCCCCCCCcceEE
Confidence 4566899999999999988899999999775
No 74
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=20.41 E-value=99 Score=26.70 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=45.7
Q ss_pred ceEEEEEEeCCCceEEEc-CCC-cEEEEEEEEEecCCCCceEEEEEEehHHHHHHHhcC-ccCceEEEEEEeeeeee
Q 022388 87 NTVHLIGVVGTPIETKHL-PSG-KVLAWTRLAVRKSATQTSWINLTFWDELAHVASQHV-EKGQQIYISGRLVSDVV 160 (298)
Q Consensus 87 N~V~LIGrVg~dPelr~t-~nG-k~va~f~LAv~r~~~~t~wi~Vv~wg~lAe~~a~~L-kKGD~V~VsGrL~s~~~ 160 (298)
..|.++|-|..--..+.+ .+- ..++.|+|.-........=+.|.+|.+..+.+ -.+ ..||.|.+.. ++...|
T Consensus 43 ~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~L-P~V~~~GDIIlL~r-vkiq~~ 117 (187)
T 1qzg_A 43 TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDL-PVIKQVGQPLLLHQ-ITLRSY 117 (187)
T ss_dssp EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCS-CCCCSTTCEEEEEE-EEEEEE
T ss_pred CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhC-CCCCCCCCEEEEEE-EEEEEE
Confidence 468999999532222333 332 57888888765532233349999998755544 344 8899999985 344455
Done!