BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022394
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FQT|A Chain A, Crystal Structure Of The Rieske-type Ferredoxin Associated
With Biphenyl Dioxygenase
pdb|1FQT|B Chain B, Crystal Structure Of The Rieske-type Ferredoxin Associated
With Biphenyl Dioxygenase
Length = 112
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 100 LPKGERRVIIQDGETILLLWYKDEVFAIENR------SPAEGAYSEGLINAKLTQDGCIV 153
+P+GE + G ++ + E+FA ++R S ++G Y EG + +
Sbjct: 15 VPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDV---------VE 65
Query: 154 CPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207
C F +RTG V+ P L IFP++ ++ ++ + E G
Sbjct: 66 CSLHMGKFCVRTGKVKS-----------PPPCEALKIFPIRIEDNDVLVDFEAG 108
>pdb|3GCE|A Chain A, Ferredoxin Of Carbazole 1,9a-Dioxygenase From Nocardioides
Aromaticivorans Ic177
Length = 121
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 92 VPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQDG 150
V V L L G DG+ ++++ D V+AI N S AE G+ +A+ +
Sbjct: 12 VRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSVYAISNLCSHAEAYLDMGVFHAESLE-- 69
Query: 151 CIVCPTTESTFDLRTGA 167
I CP FD+RTGA
Sbjct: 70 -IECPLHVGRFDVRTGA 85
>pdb|2QPZ|A Chain A, Naphthalene 1,2-Dioxygenase Rieske Ferredoxin
Length = 103
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQ 148
W+ V LS + +G+ + +G+ + L + E++A +N A S+G + +
Sbjct: 3 KWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYLEGRE-- 60
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRAL-TPALSTLYIFPVKTDEKNIYIRM 204
I CP + FD+ TG +AL P + +PVK + + I +
Sbjct: 61 ---IECPLHQGRFDVCTG------------KALCAPVTQNIKTYPVKIENLRVMIDL 102
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 21/156 (13%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAK---L 146
+W P L +GE + GE +LL K EV AI A+G G+ +K
Sbjct: 34 HWHPAAFDHELAEGEFVAVTMLGEKVLLTRAKGEVKAI-----ADGCAHRGVPFSKEPLC 88
Query: 147 TQDGCIVCPTTESTFDLRTGAVRDWY--PNNPVLRALTPALSTLYIFPVKTDEKNIYIRM 204
+ G + C T+DL G + D P +PV+ + + ++PV+ + +++ +
Sbjct: 89 FKAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKI-----GIKVYPVQVAQGVVFVFI 143
Query: 205 EGGASSDASAEIVFSGKAQPGVTATDVNIEEVRMVV 240
G A +E + PG D ++ +R V
Sbjct: 144 -GDEEPHALSEDL-----PPGFLDEDTHLLGIRRTV 173
>pdb|2I7F|A Chain A, Sphingomonas Yanoikuyae B1 Ferredoxin
pdb|2I7F|B Chain B, Sphingomonas Yanoikuyae B1 Ferredoxin
Length = 108
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKD-EVFAIENRSPAEGAYSEGLINAKLT- 147
N + + ++++ GE + Q+ L ++ D EVF +N + G NA LT
Sbjct: 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLC------THG--NAMLTD 54
Query: 148 --QDGCIV-CPTTESTFDLRTGAVR 169
QDG I+ CP +FD+ TGA +
Sbjct: 55 GYQDGTIIECPFHGGSFDIATGAAK 79
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 195 TDEKNIYIRMEGGASSDASAEIVFSGKAQPGVTATDVNI--EEVRMVVD----------E 242
+++K I +++ G + +A I K PGVT +VN+ E V ++ D E
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 243 DLEGFGFNVTSE 254
+E G++V +E
Sbjct: 63 KIEKLGYHVVTE 74
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 195 TDEKNIYIRMEGGASSDASAEIVFSGKAQPGVTATDVNI--EEVRMVVD----------E 242
+++K I +++ G + +A I K PGVT +VN+ E V ++ D E
Sbjct: 3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQE 62
Query: 243 DLEGFGFNVTSE 254
+E G++V E
Sbjct: 63 KIEKLGYHVVIE 74
>pdb|3SY9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
pdb|3SY9|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Occd2 (Opdc)
Length = 430
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 204 MEGGASSDASAEIVF-SGKAQPGVTATDVNIEEVRMVVDEDLEGFG 248
++GG + D S + + + + G +A D +I+E R++VD ++ FG
Sbjct: 378 VQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDEYRVIVDYPIDVFG 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,158,837
Number of Sequences: 62578
Number of extensions: 247639
Number of successful extensions: 513
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 13
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)