BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022394
(298 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O52381|NAGAB_RALSP Naphthalene 1,2-dioxygenase/salicylate 5-hydroxylase systems,
ferredoxin component OS=Ralstonia sp. GN=nagAb PE=1 SV=1
Length = 104
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLT 147
+NW+ L +P+G+ + +G+ I L + E++A +N A S+G + +
Sbjct: 3 QNWIDAACLDDIPEGDVVGVKVNGKEIALYEVEGEIYATDNLCTHGAARMSDGFLEGRE- 61
Query: 148 QDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRAL-TPALSTLYIFPVKTDEKNIYIRME 205
I CP + FD+ TG +AL TP + +PVK + + ++ME
Sbjct: 62 ----IECPLHQGRFDVCTG------------KALCTPLTKDIKTYPVKIENMRVMLKME 104
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=hemH PE=3 SV=1
Length = 387
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 214 AEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDF 271
+++V QP DV + ++V++ E E +G + +E+ NG+ A +GFL LL
Sbjct: 315 SDLVEQTLEQPRFRLEDVTLLPKKVKLYPQERWE-WGITLNAEVWNGRIAMLGFLALL-V 372
Query: 272 ELLTGKGLLKGTGFL 286
ELLTG+G L G L
Sbjct: 373 ELLTGRGPLHALGLL 387
>sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (strain PCC 7942) GN=hemH
PE=3 SV=1
Length = 387
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 214 AEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDF 271
+++V QP DV + ++V++ E E +G + +E+ NG+ A +GFL LL
Sbjct: 315 SDLVEQTLEQPRFRLEDVTLLPKKVKLYPQERWE-WGITLNAEVWNGRIAMLGFLALL-V 372
Query: 272 ELLTGKGLLKGTGFL 286
ELLTG+G L G L
Sbjct: 373 ELLTGRGPLHALGLL 387
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3
SV=1
Length = 48
Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFLD 287
+GF ++E NG+ A IGF+ ++ EL+TGKGLL +G ++
Sbjct: 8 WGFTDSAETWNGRFAMIGFMAVIFIELVTGKGLLYLSGLMN 48
>sp|Q7N4V8|HCAC_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaC PE=3 SV=1
Length = 105
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 94 VVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQDGCI 152
V + LP G R + + I L Y E FA+++R S + SEG + T +
Sbjct: 6 VCTVEELPDGGARKV-EYTPDIALFHYDGEFFAVDDRCSHGNASISEGYLEDNAT----V 60
Query: 153 VCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
CP ++F LRTG +AL PA L +PV + NIYI +
Sbjct: 61 ECPLHTASFCLRTG------------KALCLPATDPLKTYPVVVKDGNIYITV 101
>sp|B1XL79|HEMH_SYNP2 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=hemH PE=3 SV=1
Length = 386
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+G N ++E++NG+ A IGFL LL EL++G+G L G +
Sbjct: 348 WGMNTSAEVLNGRLAMIGFLALL-LELISGQGPLHFVGIM 386
>sp|Q96NN9|AIFM3_HUMAN Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1
Length = 605
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 94 VVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIV 153
V + L G+ R + +LL+ E A+ ++ P GA L+ L++ G +
Sbjct: 72 VCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGA---PLVKGVLSR-GRVR 127
Query: 154 CPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203
CP + F++ TG + D+ P L +L+ F VK +++ +Y+R
Sbjct: 128 CPWHGACFNISTGDLEDF-----------PGLDSLHKFQVKIEKEKVYVR 166
>sp|Q51493|NDOA_PSEAI Naphthalene 1,2-dioxygenase system ferredoxin subunit
OS=Pseudomonas aeruginosa GN=ndoA PE=3 SV=3
Length = 104
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLT 147
E W+ V L +P+G+ + +G+ + L + E++A +N A S+G + +
Sbjct: 3 EKWIDAVALYEIPEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGAARMSDGFLEGRE- 61
Query: 148 QDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRAL-TPALSTLYIFPVKTDEKNIYIRM 204
I CP + FD+ TG RAL P + +PVK + + + I +
Sbjct: 62 ----IECPLHQGRFDVCTG------------RALCAPVTQNIKTYPVKIEGQRVMIDL 103
>sp|Q10499|AIF1_SCHPO Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aif1 PE=3 SV=3
Length = 611
Score = 38.1 bits (87), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 17/101 (16%)
Query: 115 ILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYP 173
+LL+ ++ FA + GA ++G++ T DG IVCP + F+ TG V D
Sbjct: 81 VLLVRARNTYFATAGKCSHYGAPLAKGVV----TSDGHIVCPWHGACFNAATGDVED--- 133
Query: 174 NNPVLRALTPALSTLYIFPVKTD-EKNIYIRMEGGASSDAS 213
TPA++ L FPV + + +++I +E + AS
Sbjct: 134 --------TPAIAALRTFPVTEEGDGSLWIEVEDKNDNGAS 166
>sp|B2J9P0|HEMH_NOSP7 Ferrochelatase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=hemH PE=3 SV=1
Length = 388
Score = 37.7 bits (86), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 211 DASAEIVFSGKAQPGVTATDVNIEE--VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLL 268
+A AE+V P + + V+M E E +G ++E+ NG+ A +GF+ L
Sbjct: 312 NALAELVIDALKNPSFKLSQAAQMKKMVKMYPQERWE-WGLTTSAEVWNGRIAMLGFIAL 370
Query: 269 LDFELLTGKGLLKGTGFLD 287
+ EL+TG G L G L
Sbjct: 371 I-IELITGHGFLHMIGLLQ 388
>sp|Q31XV0|HCAC_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaC
PE=3 SV=1
Length = 106
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGSDIFIDL 101
>sp|Q10WR6|HEMH_TRIEI Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH
PE=3 SV=1
Length = 387
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 214 AEIVFSGKAQPGVTATD-VNIEEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFE 272
A++V P +D + ++++ + ++ +G T+E+ NG+ A +GF+ LL E
Sbjct: 315 ADLVMEALDAPSRDFSDAIQMKKIIKMYPQERWQWGLTTTAEVWNGRLAMVGFMALL-LE 373
Query: 273 LLTGKGLLKGTGFL 286
L+TG G L G L
Sbjct: 374 LITGYGPLHFAGLL 387
>sp|Q8YQR8|HEMH_NOSS1 Ferrochelatase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hemH
PE=3 SV=1
Length = 388
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 236 VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFLD 287
V+M E E +G ++E+ NG+ A +GF+ L+ EL+TG+GLL G L
Sbjct: 339 VKMYPPESWE-WGMTSSAEVWNGRIAMLGFIALI-IELVTGQGLLHMIGLLQ 388
>sp|Q84BZ1|ANDAB_BURCE Anthranilate 1,2-dioxygenase ferredoxin subunit OS=Burkholderia
cepacia GN=andAb PE=1 SV=1
Length = 108
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
W P+ + + E + + I + DE+FA+ + S SEG + +
Sbjct: 8 EWHPLGAIDEFTEDEPAARVAGQKPIAVFRIGDELFAMHDLCSHGHARLSEGYV-----E 62
Query: 149 DGCIVCPTTESTFDLRTGA 167
DGC+ CP + D+RTGA
Sbjct: 63 DGCVECPLHQGLIDIRTGA 81
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=hemH PE=3 SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 236 VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFLD 287
V+M E E +G ++E+ NG+ A +GF+ L+ EL+TG+GLL G L
Sbjct: 339 VKMYPPESWE-WGMTSSAEVWNGRIAMLGFIALI-IELVTGQGLLHMIGLLQ 388
>sp|Q0T1X9|HCAC_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaC
PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLSTYPVHVEGGDIFIDL 101
>sp|Q3YZ13|HCAC_SHISS 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Shigella sonnei (strain Ss046) GN=hcaC PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|P0ABW2|HCAC_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Shigella flexneri GN=hcaC PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|P0ABW0|HCAC_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Escherichia coli (strain K12) GN=hcaC PE=1 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|A8A346|HCAC_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Escherichia coli O9:H4 (strain HS) GN=hcaC PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|P0ABW1|HCAC_ECO57 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Escherichia coli O157:H7 GN=hcaC PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|A7ZPY3|HCAC_ECO24 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=hcaC PE=3 SV=1
Length = 106
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
N + P++ +P+GE + I I L E +AI +R S + SEG L
Sbjct: 2 NRIYACPVADVPEGEA-LRIDTSPVIALFNVGGEFYAINDRCSHGNASMSEGY----LED 56
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALT-PALSTLYIFPVKTDEKNIYIRM 204
D + CP ++F L+TG +AL PA L +PV + +I+I +
Sbjct: 57 DATVECPLHAASFCLKTG------------KALCLPATDPLTTYPVHVEGGDIFIDL 101
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1)
GN=hemH PE=3 SV=2
Length = 388
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 212 ASAEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLL 269
A A++V A P T +VN + V++ E E +G +E NG+ A +GFL L+
Sbjct: 314 ALAQLVKEALAAPPRTFAEVNQSRKRVKLYPQERWE-WGMTSAAERWNGRLAMLGFLALM 372
Query: 270 DFELLTGKGLLKGTGFL 286
EL++G+G L G L
Sbjct: 373 -IELISGQGPLHMLGLL 388
>sp|Q31C09|HEMH_PROM9 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemH
PE=3 SV=1
Length = 391
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 214 AEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDF 271
+++V S +P V + + E+V++ E + +G+N +SE+ NG+ A I FL+L
Sbjct: 319 SDLVISCLEEPQVNIEEASKLPEKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIVFLVLF-I 376
Query: 272 ELLTGKGLLKGTGFL 286
EL+ G G L G L
Sbjct: 377 ELIAGSGPLHRLGIL 391
>sp|Q07947|BEDB_PSEPU Benzene 1,2-dioxygenase system ferredoxin subunit OS=Pseudomonas
putida GN=bedB PE=3 SV=1
Length = 107
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENR-SPAEGAYSEGLINAKLTQ 148
W ++ S LP GE + E +++ E FA+++ + + A SEG ++ + +
Sbjct: 2 TWTYILRQSDLPPGEMQRYEGGSEPVMVCNVDGEFFAVQDTCTHGDWALSEGYLDGDVVE 61
Query: 149 DGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207
C F +RTG V +AL PA + ++P+K + +++ ++ G
Sbjct: 62 -----CTLHFGKFCVRTGKV----------KAL-PACKPIKVYPIKIEGDEVHVDLDNG 104
>sp|Q7V2F5|HEMH_PROMP Ferrochelatase OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=hemH PE=3 SV=1
Length = 391
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 234 EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
E+V++ E + +G+N +SE+ NG+ A I FL+L EL++G G L G L
Sbjct: 341 EKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIVFLILF-IELISGSGPLHKLGIL 391
>sp|A3PBP9|HEMH_PROM0 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemH
PE=3 SV=1
Length = 391
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 231 VNIEE-------VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283
VNIEE V++ E + +G+N +SE+ NG+ A I FL+L EL++G G L
Sbjct: 331 VNIEEASQLPEKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIIFLVLF-IELISGSGPLHKL 388
Query: 284 GFL 286
G L
Sbjct: 389 GIL 391
>sp|A2BVI7|HEMH_PROM5 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemH
PE=3 SV=1
Length = 391
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 234 EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
E+V++ E + +G+N +SE+ NG+ A I FL+L EL++G G L G L
Sbjct: 341 EKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIVFLILF-IELISGSGPLHKLGIL 391
>sp|B7K399|HEMH_CYAP8 Ferrochelatase OS=Cyanothece sp. (strain PCC 8801) GN=hemH PE=3
SV=1
Length = 387
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 211 DASAEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLL 268
D+ A++V +P T V E ++M E + +G +E+ NG+ A +GF+ L
Sbjct: 312 DSLAQLVTKSLQEPPCTFNQVIHPKENMKMYPQERWQ-WGLTTAAEVWNGRLAMVGFIAL 370
Query: 269 LDFELLTGKGLLKGTGFL 286
L EL++G G L G L
Sbjct: 371 L-IELISGHGPLHFVGLL 387
>sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain CC9311) GN=hemH PE=3
SV=1
Length = 391
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 236 VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
V++ E E +G+N +SE+ NG+ A IGF L EL++G G L G L
Sbjct: 343 VKLYPQEKWE-WGWNNSSEVWNGRLAMIGFSAFL-LELISGHGPLHAVGLL 391
>sp|A8G3P0|HEMH_PROM2 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemH
PE=3 SV=1
Length = 391
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 234 EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
E+V++ E + +G+N +SE+ NG+ A I FL+L EL++G G L G L
Sbjct: 341 EKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIIFLVLF-IELISGSGPLHKLGIL 391
>sp|A2BQ06|HEMH_PROMS Ferrochelatase OS=Prochlorococcus marinus (strain AS9601) GN=hemH
PE=3 SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 234 EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
E+V++ E + +G+N +SE+ NG+ A I FL+L EL++G G L G L
Sbjct: 341 EKVKLYPQEKWQ-WGWNNSSEVWNGRVAMIIFLVLF-IELISGSGPLHKLGIL 391
>sp|B7KGB9|HEMH_CYAP7 Ferrochelatase OS=Cyanothece sp. (strain PCC 7424) GN=hemH PE=3
SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 211 DASAEIVFSGKAQPGVTATDVN--IEEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLL 268
D+ A++V + + T ++ + ++M E E +G +E+ NG+ A IGF+ L
Sbjct: 312 DSLAQLVINSLTENSYTFEEITRPKKNMKMYPQERWE-WGMTTAAEVWNGRLAMIGFIAL 370
Query: 269 LDFELLTGKGLLKGTGFL 286
L EL++G G L G L
Sbjct: 371 L-IELISGHGPLHFVGLL 387
>sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=hemH PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 211 DASAEIVFSGKAQPGVTATDVNI--EEVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLL 268
DA A++V P T V + ++M E E +G +E+ NG+ A +GF+ L
Sbjct: 312 DALAQMVMDSLNDPPCTFETVPHPKKNMKMYPQERWE-WGLTTAAEVWNGRLAMLGFIAL 370
Query: 269 LDFELLTGKGLLKGTGFL 286
L EL++G+G L G L
Sbjct: 371 L-VELISGQGPLHFVGLL 387
>sp|Q3ALP2|HEMH_SYNSC Ferrochelatase OS=Synechococcus sp. (strain CC9605) GN=hemH PE=3
SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 235 EVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+V++ E E +G+N +SE+ NG+ A +GF L EL++G+G L G L
Sbjct: 342 KVKLYPQEKWE-WGWNNSSEVWNGRLAMVGFSAFL-LELISGQGPLHALGLL 391
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3
SV=1
Length = 48
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+GF ++E NG+ A IGF+ ++ E++TG+GLL G +
Sbjct: 8 WGFTDSAETWNGRFAMIGFISVIFIEVVTGQGLLYLIGMM 47
>sp|P37332|BPHF_BURXL Biphenyl dioxygenase system ferredoxin subunit OS=Burkholderia
xenovorans (strain LB400) GN=bphF PE=1 SV=2
Length = 109
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 100 LPKGERRVIIQDGETILLLWYKDEVFAIENR------SPAEGAYSEGLINAKLTQDGCIV 153
+P+GE + G ++ + E+FA ++R S ++G Y EG + +
Sbjct: 12 VPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYLEGDV---------VE 62
Query: 154 CPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207
C F +RTG V+ P L IFP++ ++ ++ + E G
Sbjct: 63 CSLHMGKFCVRTGKVKS-----------PPPCEALKIFPIRIEDNDVLVDFEAG 105
>sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (strain NIES-843) GN=hemH
PE=3 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 236 VRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
++M E E +G +E+ NG+ A IGFL ++ EL+TG+G L G L
Sbjct: 339 MKMYPQERWE-WGMTTAAEVWNGRLAMIGFLAII-IELITGQGPLHFVGLL 387
>sp|Q9TM07|YCF17_CYACA Uncharacterized protein ycf17 OS=Cyanidium caldarium GN=ycf17 PE=3
SV=1
Length = 43
Score = 34.7 bits (78), Expect = 0.80, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+GF+ ++ELING+ A + F+L L E +T + +L FL
Sbjct: 4 YGFHQSTELINGRLAMLAFILSLFIEFITEQKILHFLKFL 43
>sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain WH8102) GN=hemH PE=3
SV=1
Length = 391
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 235 EVRMVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+V++ E E +G+N +SE+ NG+ A +GF L EL++G G L G L
Sbjct: 342 KVKLYPQEKWE-WGWNNSSEVWNGRLAMLGFSAFL-LELISGHGPLHALGLL 391
>sp|O78425|YCF17_GUITH Uncharacterized protein ycf17 OS=Guillardia theta GN=ycf17 PE=3
SV=1
Length = 53
Score = 34.7 bits (78), Expect = 0.98, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 280
+GFNV +E NG+ A I FLL++ E +T K +L
Sbjct: 14 WGFNVYAENWNGRLAMISFLLIICVEFITNKNVL 47
>sp|O43063|PSB1_SCHPO Probable proteasome subunit beta type-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre3 PE=3 SV=1
Length = 226
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 95 VPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQ-DGCIV 153
V ++A+ KGE R+ G TI L YKD V + GAY + KLTQ I
Sbjct: 11 VDINAIKKGEIRM----GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIW 66
Query: 154 CPTTESTFDLRTGA 167
C + S D +T A
Sbjct: 67 CCRSGSAADTQTVA 80
>sp|Q7V6C6|HEMH_PROMM Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemH
PE=3 SV=1
Length = 391
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+G N +SE NG+ A +GF L EL++G G L G L
Sbjct: 353 WGLNTSSEAWNGRIAMLGFAAFL-LELISGHGPLHAIGLL 391
>sp|A2C7Q7|HEMH_PROM3 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemH
PE=3 SV=1
Length = 391
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+G N +SE NG+ A +GF L EL++G G L G L
Sbjct: 353 WGLNTSSEAWNGRIAMLGFAAFL-LELISGHGPLHAIGLL 391
>sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain RCC307) GN=hemH PE=3
SV=1
Length = 387
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
+G+N +SE+ NG+ A +GF L EL++G G L G L
Sbjct: 349 WGWNNSSEVWNGRLAMLGFSAFL-VELISGHGPLHALGLL 387
>sp|P70569|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1
Length = 1846
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 196 DEKN--IYIRMEGGASSDASAEIVFSGKAQPGVTATDVNIEEVRMVVDEDLEGFGFNVTS 253
DEKN I + E GA SA+ A G +A+D NIEE + +E G T+
Sbjct: 153 DEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNIEEKVLASSPIMEAIGNAKTT 212
Query: 254 ELIN----GKAAAIGF 265
N GK IGF
Sbjct: 213 RNDNSSRFGKYIEIGF 228
>sp|P21271|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2
Length = 1818
Score = 33.1 bits (74), Expect = 2.8, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 196 DEKN--IYIRMEGGASSDASAEIVFSGKAQPGVTATDVNIEEVRMVVDEDLEGFGFNVTS 253
DEKN I + E GA SA+ A G +A+D NIEE + +E G T+
Sbjct: 153 DEKNQSIIVSGESGAGKTVSAKYAMRYFATVGGSASDTNIEEKVLASSPIMEAIGNAKTT 212
Query: 254 ELIN----GKAAAIGF 265
N GK IGF
Sbjct: 213 RNDNSSRFGKFIEIGF 228
>sp|O07683|SYD_HALSA Aspartate--tRNA ligase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=aspS PE=3 SV=1
Length = 436
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 155 PTTESTFDLRT---GAVRDWYPNNPVLRALTPALST------LYIFPVKTDEKNIYI 202
P+T++ F LR+ GA+ DW+ +N TP LST +FPV +K Y+
Sbjct: 130 PSTKAVFSLRSKAMGAMTDWFYDNRFEEVDTPELSTAGAEGGADLFPVVYYDKEAYL 186
>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=5
Length = 3623
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 171 WYPNNPVLRALTPALSTLYIFPVKTDEKNIY--IRMEGGASSDASAEIVFSGKAQPGVTA 228
W PV + + +T + T ++ +Y +++ G S +A+ F G P
Sbjct: 3187 WIIIAPVNKVIHLTFNTFALEAASTRQRCLYDYVKLYDGDSENANLAGTFCGSTVPAPFI 3246
Query: 229 TDVNIEEVRMVVDEDLEGFGFNVTSELIN 257
+ N V+ + D LE GFN T +++
Sbjct: 3247 SSGNFLTVQFISDLTLEREGFNATYTIMD 3275
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3
SV=1
Length = 49
Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 238 MVVDEDLEGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGFL 286
M + ++ +GF +E NG+ A +GF+ L E LTG+G L G L
Sbjct: 1 MQEERNIWNWGFTSGAENWNGRLAMLGFIAALLTESLTGQGTLHFLGIL 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,907,831
Number of Sequences: 539616
Number of extensions: 5461298
Number of successful extensions: 18681
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 18604
Number of HSP's gapped (non-prelim): 138
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)