Query 022394
Match_columns 298
No_of_seqs 299 out of 1710
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03531 Rieske_RO_Alpha_KSH Th 100.0 9.3E-28 2E-32 196.0 12.8 111 90-211 1-113 (115)
2 cd04338 Rieske_RO_Alpha_Tic55 99.9 1.6E-27 3.5E-32 199.6 13.4 117 85-209 12-130 (134)
3 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 2.1E-27 4.5E-32 199.3 13.7 118 86-209 10-128 (136)
4 cd04337 Rieske_RO_Alpha_Cao Ca 99.9 5.5E-27 1.2E-31 195.3 12.7 110 86-208 13-124 (129)
5 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 7.7E-27 1.7E-31 196.5 13.4 119 85-209 12-134 (138)
6 cd03537 Rieske_RO_Alpha_PrnD T 99.9 7.7E-27 1.7E-31 192.9 12.5 113 89-209 2-119 (123)
7 cd03528 Rieske_RO_ferredoxin R 99.9 1E-26 2.2E-31 183.4 12.0 97 91-203 1-98 (98)
8 TIGR02377 MocE_fam_FeS Rieske 99.9 1.4E-26 3E-31 184.8 12.2 99 90-204 1-101 (101)
9 cd03479 Rieske_RO_Alpha_PhDO_l 99.9 3.8E-26 8.3E-31 193.5 12.6 115 86-208 17-134 (144)
10 PRK09965 3-phenylpropionate di 99.9 5.1E-26 1.1E-30 183.0 12.5 101 90-207 2-104 (106)
11 cd03530 Rieske_NirD_small_Baci 99.9 4.9E-26 1.1E-30 179.9 11.5 96 91-203 1-98 (98)
12 cd03474 Rieske_T4moC Toluene-4 99.9 1.3E-25 2.7E-30 180.7 12.8 102 91-209 1-104 (108)
13 cd03532 Rieske_RO_Alpha_VanA_D 99.9 7.9E-26 1.7E-30 184.7 11.6 108 88-207 3-112 (116)
14 cd03469 Rieske_RO_Alpha_N Ries 99.9 9.2E-26 2E-30 183.5 11.3 113 91-209 1-116 (118)
15 cd03529 Rieske_NirD Assimilato 99.9 2E-25 4.4E-30 178.4 11.2 100 91-203 1-103 (103)
16 PF13806 Rieske_2: Rieske-like 99.9 1.8E-25 3.8E-30 179.7 10.8 101 90-203 1-104 (104)
17 TIGR02378 nirD_assim_sml nitri 99.9 1.8E-25 3.9E-30 179.0 10.7 102 90-204 1-105 (105)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 3.7E-25 8.1E-30 181.7 12.0 111 90-207 1-114 (118)
19 PRK09511 nirD nitrite reductas 99.9 3.8E-25 8.3E-30 178.8 11.7 100 90-203 3-107 (108)
20 cd03478 Rieske_AIFL_N AIFL (ap 99.9 4.5E-25 9.7E-30 173.6 11.1 93 93-201 2-95 (95)
21 cd03539 Rieske_RO_Alpha_S5H Th 99.9 5E-25 1.1E-29 183.5 11.8 113 91-209 1-127 (129)
22 PLN02518 pheophorbide a oxygen 99.9 2.2E-24 4.7E-29 216.3 16.7 116 86-207 86-208 (539)
23 cd03545 Rieske_RO_Alpha_OHBDO_ 99.9 9.7E-25 2.1E-29 186.2 12.1 118 86-209 20-148 (150)
24 PLN00095 chlorophyllide a oxyg 99.9 4.2E-24 9.2E-29 204.2 13.9 114 84-208 66-182 (394)
25 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 4.5E-24 9.7E-29 176.2 12.0 114 89-208 1-120 (123)
26 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 5.4E-24 1.2E-28 177.1 11.7 117 87-209 5-126 (128)
27 PLN02281 chlorophyllide a oxyg 99.9 4.2E-24 9.2E-29 211.9 12.6 110 86-208 216-327 (536)
28 cd03536 Rieske_RO_Alpha_DTDO T 99.9 7.3E-24 1.6E-28 175.0 11.3 113 91-209 1-119 (123)
29 COG2146 {NirD} Ferredoxin subu 99.9 1.2E-23 2.5E-28 169.7 11.9 102 88-205 2-106 (106)
30 PF00355 Rieske: Rieske [2Fe-2 99.9 1.7E-23 3.8E-28 164.4 10.2 95 90-198 1-97 (97)
31 cd03538 Rieske_RO_Alpha_AntDO 99.9 3.4E-23 7.4E-28 175.9 10.7 119 85-208 17-143 (146)
32 COG4638 HcaE Phenylpropionate 99.9 5.2E-23 1.1E-27 197.7 11.0 118 86-210 23-143 (367)
33 cd03542 Rieske_RO_Alpha_HBDO R 99.9 4.2E-22 9.2E-27 164.6 12.3 113 91-209 1-121 (123)
34 cd03467 Rieske Rieske domain; 99.9 1.3E-21 2.8E-26 154.3 11.7 94 91-200 1-97 (98)
35 TIGR03228 anthran_1_2_A anthra 99.8 3.4E-21 7.4E-26 189.3 9.6 134 64-208 16-154 (438)
36 cd03476 Rieske_ArOX_small Smal 99.8 1.6E-20 3.4E-25 156.0 11.4 95 92-203 4-114 (126)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 5.3E-20 1.1E-24 144.5 10.0 86 94-197 2-89 (91)
38 TIGR03229 benzo_1_2_benA benzo 99.8 6E-20 1.3E-24 180.5 10.1 134 66-209 18-159 (433)
39 cd03473 Rieske_CMP_Neu5Ac_hydr 99.8 2.4E-19 5.2E-24 143.9 10.2 69 97-170 14-86 (107)
40 TIGR02694 arsenite_ox_S arseni 99.8 5.3E-19 1.2E-23 147.3 10.5 93 92-201 7-114 (129)
41 cd03471 Rieske_cytochrome_b6f 99.8 4.9E-18 1.1E-22 140.7 11.6 88 101-206 21-113 (126)
42 cd03470 Rieske_cytochrome_bc1 99.7 1.2E-17 2.5E-22 138.8 11.2 90 96-202 5-125 (126)
43 PRK13474 cytochrome b6-f compl 99.7 2.9E-16 6.3E-21 137.6 11.9 86 101-204 73-163 (178)
44 TIGR01416 Rieske_proteo ubiqui 99.6 5.3E-15 1.1E-19 129.2 11.1 94 89-199 39-169 (174)
45 cd03475 Rieske_SoxF_SoxL SoxF 99.3 5.6E-12 1.2E-16 109.4 8.2 67 121-202 74-158 (171)
46 PHA02337 putative high light i 99.3 1.2E-12 2.6E-17 83.9 2.5 33 249-281 1-33 (35)
47 COG0723 QcrA Rieske Fe-S prote 98.9 3.7E-09 8E-14 92.4 7.0 68 123-207 100-170 (177)
48 PLN00014 light-harvesting-like 98.9 9.6E-10 2.1E-14 98.4 3.3 39 246-285 156-194 (250)
49 PLN00084 photosystem II subuni 98.7 4.5E-09 9.8E-14 90.2 2.5 35 251-285 136-171 (214)
50 TIGR03171 soxL2 Rieske iron-su 98.6 1.1E-07 2.3E-12 89.7 7.3 70 121-202 175-275 (321)
51 KOG1671 Ubiquinol cytochrome c 98.4 5.4E-07 1.2E-11 79.4 6.5 70 96-170 91-187 (210)
52 PF00504 Chloroa_b-bind: Chlor 97.2 0.00011 2.4E-09 62.8 0.8 29 245-273 128-156 (156)
53 KOG1336 Monodehydroascorbate/f 97.1 0.00031 6.8E-09 69.7 3.1 33 133-170 1-34 (478)
54 PF00504 Chloroa_b-bind: Chlor 97.0 0.00016 3.6E-09 61.7 0.2 33 246-278 25-57 (156)
55 PLN00100 light-harvesting comp 96.9 0.00032 7E-09 64.4 1.2 35 250-284 160-194 (246)
56 PLN00089 fucoxanthin-chlorophy 96.9 0.00053 1.1E-08 61.8 2.4 33 249-281 176-208 (209)
57 PLN00147 light-harvesting comp 96.9 0.00045 9.7E-09 63.8 1.9 35 249-283 199-233 (252)
58 PLN00099 light-harvesting comp 96.6 0.001 2.3E-08 61.1 1.6 35 249-283 185-220 (243)
59 PLN00101 Photosystem I light-h 96.5 0.0008 1.7E-08 62.1 0.6 34 250-283 200-233 (250)
60 PLN00048 photosystem I light h 96.5 0.0012 2.6E-08 61.4 1.6 33 249-281 84-116 (262)
61 PLN00025 photosystem II light 96.5 0.0013 2.7E-08 61.2 1.6 37 247-283 203-239 (262)
62 PLN00101 Photosystem I light-h 96.4 0.0014 3E-08 60.5 1.4 35 246-280 87-121 (250)
63 PLN00048 photosystem I light h 96.3 0.0015 3.3E-08 60.7 1.4 36 248-283 208-243 (262)
64 PLN00171 photosystem light-ha 96.2 0.0021 4.6E-08 61.1 1.9 36 248-283 271-306 (324)
65 PLN00098 light-harvesting comp 96.2 0.0022 4.8E-08 59.7 1.8 35 249-283 214-248 (267)
66 PLN00187 photosystem II light- 96.1 0.0028 6.1E-08 59.5 1.9 35 249-283 234-268 (286)
67 PLN00097 photosystem I light h 96.1 0.0024 5.2E-08 58.7 1.4 37 247-283 194-230 (244)
68 PLN00120 fucoxanthin-chlorophy 96.0 0.0035 7.7E-08 56.2 2.1 27 251-277 169-195 (202)
69 PLN00098 light-harvesting comp 96.0 0.0022 4.7E-08 59.8 0.6 36 246-281 96-131 (267)
70 PLN00170 photosystem II light- 95.7 0.003 6.5E-08 58.4 0.1 37 245-281 90-126 (255)
71 PLN00187 photosystem II light- 95.5 0.004 8.8E-08 58.5 0.3 31 247-277 130-160 (286)
72 PLN00097 photosystem I light h 95.5 0.0047 1E-07 56.8 0.7 34 246-279 78-111 (244)
73 PLN00025 photosystem II light 95.4 0.0043 9.3E-08 57.7 0.2 34 246-279 87-120 (262)
74 PLN00171 photosystem light-ha 95.2 0.0068 1.5E-07 57.8 0.7 34 246-279 144-177 (324)
75 PLN00147 light-harvesting comp 95.0 0.0069 1.5E-07 56.0 0.2 34 246-279 79-112 (252)
76 PLN00170 photosystem II light- 94.4 0.015 3.2E-07 53.9 0.9 38 247-285 218-255 (255)
77 PLN00099 light-harvesting comp 93.4 0.029 6.4E-07 51.7 0.8 31 246-276 78-108 (243)
78 PLN00100 light-harvesting comp 93.2 0.031 6.8E-07 51.5 0.6 30 246-275 69-98 (246)
79 PLN02449 ferrochelatase 93.1 0.062 1.3E-06 54.2 2.6 23 260-282 463-485 (485)
80 PLN00089 fucoxanthin-chlorophy 92.2 0.054 1.2E-06 48.9 0.7 33 246-278 71-103 (209)
81 PLN00120 fucoxanthin-chlorophy 78.2 0.3 6.5E-06 43.9 -2.3 28 246-273 60-87 (202)
82 PF09740 DUF2043: Uncharacteri 67.9 3 6.6E-05 33.9 1.4 24 137-163 76-99 (110)
83 PF10080 DUF2318: Predicted me 66.6 63 0.0014 25.9 8.8 89 99-206 1-94 (102)
84 PF07009 DUF1312: Protein of u 64.4 14 0.00029 29.9 4.6 69 90-163 36-106 (113)
85 PF09538 FYDLN_acid: Protein o 48.7 10 0.00022 30.7 1.4 29 128-164 9-39 (108)
86 TIGR02098 MJ0042_CXXC MJ0042 f 44.8 24 0.00051 22.5 2.5 31 130-163 4-37 (38)
87 PRK00420 hypothetical protein; 38.9 29 0.00062 28.4 2.6 34 127-167 22-56 (112)
88 COG1645 Uncharacterized Zn-fin 38.5 21 0.00045 30.0 1.8 29 127-163 27-56 (131)
89 PF02959 Tax: HTLV Tax; Inter 37.4 11 0.00024 33.2 0.0 39 129-170 25-63 (222)
90 COG4391 Uncharacterized protei 35.1 47 0.001 24.3 2.9 17 148-164 45-61 (62)
91 PF05265 DUF723: Protein of un 35.1 28 0.0006 25.3 1.8 15 149-163 30-44 (60)
92 COG5341 Uncharacterized protei 27.3 1.9E+02 0.004 24.2 5.5 57 105-164 61-118 (132)
93 PF00484 Pro_CA: Carbonic anhy 27.1 28 0.00061 29.0 0.8 15 154-168 139-153 (153)
94 PLN02755 complex I subunit 27.1 33 0.00071 25.7 1.0 30 255-284 28-57 (71)
95 PLN02154 carbonic anhydrase 27.0 43 0.00094 31.8 2.1 21 154-174 253-273 (290)
96 TIGR02300 FYDLN_acid conserved 24.5 42 0.00091 28.1 1.3 30 128-164 9-39 (129)
97 COG1096 Predicted RNA-binding 23.6 2.1E+02 0.0045 25.5 5.6 55 98-160 117-174 (188)
98 cd00382 beta_CA Carbonic anhyd 23.4 35 0.00075 27.7 0.6 17 153-169 101-117 (119)
99 PLN00416 carbonate dehydratase 22.4 39 0.00084 31.5 0.8 17 154-170 228-244 (258)
100 PRK10437 carbonic anhydrase; P 21.8 40 0.00088 30.6 0.8 17 154-170 174-190 (220)
101 cd03378 beta_CA_cladeC Carboni 21.5 43 0.00092 28.7 0.8 16 154-169 137-152 (154)
102 KOG0265 U5 snRNP-specific prot 20.6 4.5E+02 0.0097 25.4 7.4 53 111-170 67-126 (338)
No 1
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=9.3e-28 Score=196.00 Aligned_cols=111 Identities=13% Similarity=0.268 Sum_probs=99.0
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
+|+.|+.++||++|+.+.++++|++|+|+|+ +|+++|++|.|||+|+ |++|.+ .++.|+||||||+||+ ||+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~-----~~~~i~CP~Hg~~fd~-~G~ 74 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTV-----KGDEIACPFHDWRWGG-DGR 74 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcc-----cCCEEECCCCCCEECC-CCC
Confidence 5999999999999999999999999999997 9999999999999997 999988 6789999999999999 999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCCCC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGASSD 211 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~~~ 211 (298)
|+. +|... ..|....|++|+|++++|.|||+++++..++
T Consensus 75 ~~~-~p~~~----~~p~~~~l~~ypv~~~~g~v~v~~~~~~~~p 113 (115)
T cd03531 75 CKA-IPYAR----RVPPLARTRAWPTLERNGQLFVWHDPEGNPP 113 (115)
T ss_pred EEE-CCccc----CCCcccccceEeEEEECCEEEEECCCCCCCC
Confidence 997 54321 1345678999999999999999999886543
No 2
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.95 E-value=1.6e-27 Score=199.61 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=100.9
Q ss_pred CCCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEe
Q 022394 85 GGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (298)
Q Consensus 85 ~~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fd 162 (298)
....+.|+.|+.++||++|+.+.++++|++|+|+|+ +|+++|++|.|||+|+ |++|.+ .++.|+||||||+||
T Consensus 12 ~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~-----~~~~i~CP~Hgw~Fd 86 (134)
T cd04338 12 YDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQL-----IDGKLECLYHGWQFG 86 (134)
T ss_pred cccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCee-----cCCEEEccCCCCEEC
Confidence 456789999999999998888999999999999997 8999999999999997 999988 678999999999999
Q ss_pred CCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 163 LRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 163 l~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+ ||+|+. +|..+.... .+...+|++|+|++++|.|||++++..+
T Consensus 87 ~-~G~~~~-~P~~~~~~~-~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 87 G-EGKCVK-IPQLPADAK-IPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred C-CCCEEE-CCCCCccCC-CCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 7 899997 665442211 2345679999999999999999987544
No 3
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=2.1e-27 Score=199.34 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=100.1
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...+.|++|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |++|.... .++.|+||||||+||++
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~~g~v~A~~n~CpHrg~~L~~g~~~~---~~~~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRVDGKVYALKDRCLHRGVPLSKKPECF---TKGTITCWYHGWTYRLD 86 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEecCCEEEEEeCcCcCCCCccccCcccc---cCCEEEecCCccEEeCC
Confidence 346789999999999999999999999999999999999999999999997 98876311 56899999999999998
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
||+|+. +|..|... .+...+|++|+|++++|+|||++++...
T Consensus 87 tG~~~~-~~~~p~~~--~~~~~~L~~ypv~~~~g~V~v~~~~~~~ 128 (136)
T cd03548 87 DGKLVT-ILANPDDP--LIGRTGLKTYPVEEAKGMIFVFVGDGDY 128 (136)
T ss_pred CccEEE-cccCCCcc--ccccCCCceEeEEEECCEEEEEeCCccc
Confidence 999997 55443211 2335689999999999999999987543
No 4
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.94 E-value=5.5e-27 Score=195.26 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=96.9
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
...+.|++|+.++||++|+.+.++++|++++|+|+ +|+++|++|.|||+|+ |++|.+ .++.|+||||||+||
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~-----~~~~i~CP~Hgw~Fd- 86 (129)
T cd04337 13 GLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKV-----IEGRIQCPYHGWEYD- 86 (129)
T ss_pred hhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcE-----eCCEEEeCCCCCEEC-
Confidence 45689999999999999999999999999999996 8999999999999997 999988 678999999999999
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
.||+|+. .|..+ +...+|++|+|++++|+|||++++..
T Consensus 87 ~tG~~~~-~P~~~------~~~~~l~~y~v~v~~g~V~V~~~~~~ 124 (129)
T cd04337 87 GDGECTK-MPSTK------CLNVGIAALPCMEQDGMIWVWPGDDP 124 (129)
T ss_pred CCCCEEe-CCcCC------CccCCcceEeEEEECCEEEEEcCCCC
Confidence 6999997 33221 22358999999999999999997653
No 5
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.94 E-value=7.7e-27 Score=196.48 Aligned_cols=119 Identities=21% Similarity=0.365 Sum_probs=101.2
Q ss_pred CCCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe--CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEE
Q 022394 85 GGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTF 161 (298)
Q Consensus 85 ~~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~--~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~F 161 (298)
.+..+.|+.|+.++||++|+.+.++++|++|+|+|+ +|+++|++|+|||+|+ |++|.+. .++.|+||||||+|
T Consensus 12 ~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~----~~~~i~CP~Hgw~F 87 (138)
T cd03480 12 FDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRID----EEGCLECPYHGWSF 87 (138)
T ss_pred CCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEc----CCCEEEeCCCCCEE
Confidence 356789999999999999999999999999999996 8999999999999997 9999872 35799999999999
Q ss_pred eCCCCceecccCCCcccc-ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 162 DLRTGAVRDWYPNNPVLR-ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 162 dl~tG~~~~~~P~~p~~~-~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
|. ||+|+. +|..+..+ ...+...+|++|+|++++|+|||++++..+
T Consensus 88 d~-tG~~~~-~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 88 DG-SGSCQR-IPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred CC-CCCEEE-CCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 96 899998 66543322 123456789999999999999999987643
No 6
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.94 E-value=7.7e-27 Score=192.95 Aligned_cols=113 Identities=15% Similarity=0.297 Sum_probs=96.9
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
..|++|+.++||+ ++...+++.|++++|+|+ +|+++|++|+|||+|+ |++|.+ +++.|+||||||+|| .||
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v-----~~~~l~CpyHGw~Fd-~~G 74 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRV-----KDGCIQCPFHHWRYD-EQG 74 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEE-----eCCEEECCCCCCEEC-CCC
Confidence 4799999999997 578899999999999997 8999999999999997 999998 678999999999999 599
Q ss_pred ceecccCCCcc-ccc--cCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 167 AVRDWYPNNPV-LRA--LTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 167 ~~~~~~P~~p~-~~~--~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+|+. +|..+. ... ..|...++++|+|++++|+|||++++..+
T Consensus 75 ~~~~-iP~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 75 QCVH-IPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CEEE-CCCCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 9998 776432 111 13456789999999999999999987543
No 7
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.94 E-value=1e-26 Score=183.35 Aligned_cols=97 Identities=33% Similarity=0.641 Sum_probs=90.9
Q ss_pred cEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCcee
Q 022394 91 WVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (298)
Q Consensus 91 W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~ 169 (298)
|+.|+.++||++|+.+.++++|++++|+|++|+++|++|+|||+|+ |+.|.+ .++.|+||||||+||++||+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~~~~~~a~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDDLCTHGDASLSEGYV-----EGGVIECPLHGGRFDLRTGKAL 75 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEECCEEEEECCcCCCCCCCCCCCeE-----eCCEEEeCCcCCEEECCCCccc
Confidence 9999999999999999999999999999999999999999999997 988877 6789999999999999999998
Q ss_pred cccCCCccccccCCCCCCCcceeEEEECCeEEEE
Q 022394 170 DWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203 (298)
Q Consensus 170 ~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~ 203 (298)
. +|+..+|++|++++++|.|||.
T Consensus 76 ~-----------~p~~~~L~~~~v~~~~g~v~v~ 98 (98)
T cd03528 76 S-----------LPATEPLKTYPVKVEDGDVYVD 98 (98)
T ss_pred C-----------CCCCCCcceEeEEEECCEEEEC
Confidence 7 6777889999999999999984
No 8
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.94 E-value=1.4e-26 Score=184.84 Aligned_cols=99 Identities=25% Similarity=0.502 Sum_probs=92.3
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
+|+.+|.++||++|+.+.++++|.+|+|+|. +|+++|++|.|||+|+ |++|.+ .++.|+||||||+||++||+
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~-----~~~~i~CP~Hg~~Fdl~tG~ 75 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLV-----MDTTVECPKHAGCFDYRTGE 75 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEE-----cCCEEECCccCCEEECCCCc
Confidence 4999999999999999999999999999997 8999999999999996 999998 67899999999999999999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEe
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRM 204 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l 204 (298)
|+. .|+..+|++|+|++++|.|||.+
T Consensus 76 ~~~-----------~p~~~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 76 ALN-----------PPVCVNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred ccC-----------CCccCCcceEeEEEECCEEEEeC
Confidence 987 56667899999999999999974
No 9
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.94 E-value=3.8e-26 Score=193.47 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=99.5
Q ss_pred CCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEe
Q 022394 86 GGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fd 162 (298)
+..+.|+.|+.++||+ +|+.+.++++|++|+|+|+ +|+++|++|+|||+|+ |+.|.+ .+++|+||||||+||
T Consensus 17 ~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~-----~~~~i~CP~Hgw~F~ 91 (144)
T cd03479 17 LLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRV-----EECGLRCCYHGWKFD 91 (144)
T ss_pred HhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcc-----cCCEEEccCCCcEEC
Confidence 4567899999999999 7999999999999999996 9999999999999997 999987 678999999999999
Q ss_pred CCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 163 LRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 163 l~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
+ ||+|+. +|..+.... .+....|++|+|++++|.|||++++.+
T Consensus 92 ~-~G~~~~-~P~~~~~~~-~~~~~~l~~~~v~~~~G~I~V~~~~~~ 134 (144)
T cd03479 92 V-DGQCLE-MPSEPPDSQ-LKQKVRQPAYPVRERGGLVWAYMGPAE 134 (144)
T ss_pred C-CCCEEE-CCCCccccC-CccccCcceEeEEEECCEEEEECCCCC
Confidence 8 899997 665433221 134568999999999999999998653
No 10
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.94 E-value=5.1e-26 Score=182.96 Aligned_cols=101 Identities=31% Similarity=0.537 Sum_probs=92.4
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCC-CeEEcCCcCcEEeCCCCc
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQD-GCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~-~~I~CP~HG~~Fdl~tG~ 167 (298)
.|+.|+.++||++|+.+.+.++ ++|+|+|.+|+++|++|.|||+|+ |++|.+ ++ +.|+||||||+||++||+
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~~g~~~A~~~~CpH~g~~L~~G~~-----~~~~~i~Cp~Hg~~Fd~~tG~ 75 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNVGGEFYAIDDRCSHGNASLSEGYL-----EDDATVECPLHAASFCLRTGK 75 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEECCEEEEEeCcCCCCCCCCCceEE-----CCCCEEEcCCCCCEEEcCCCC
Confidence 5999999999999999999887 899999999999999999999996 998988 45 799999999999999999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
++. .|...+|++|+|++++|.|||.+...
T Consensus 76 ~~~-----------~p~~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 76 ALC-----------LPATDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred eeC-----------CCCCCCcceEeEEEECCEEEEEccCC
Confidence 986 56678899999999999999998754
No 11
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.93 E-value=4.9e-26 Score=179.90 Aligned_cols=96 Identities=32% Similarity=0.669 Sum_probs=88.7
Q ss_pred cEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCce
Q 022394 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (298)
Q Consensus 91 W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~ 168 (298)
|+.|+.++||++|+.+.++++|++++|+|+ +|+++|++|.|||+|+ |+.|.+ +++.|+||||||+||++||++
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~~G~~ 75 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIV-----HGEYVTCPLHNWVIDLETGEA 75 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEE-----cCCEEECCCCCCEEECCCCCC
Confidence 999999999999999999999999999998 5999999999999996 999988 678999999999999999998
Q ss_pred ecccCCCccccccCCCCCCCcceeEEEECCeEEEE
Q 022394 169 RDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203 (298)
Q Consensus 169 ~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~ 203 (298)
.. |+..+|++|+|++++|.|||.
T Consensus 76 ~~------------p~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 76 QG------------PDEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred CC------------CCCCccceEeEEEECCEEEEC
Confidence 63 555789999999999999984
No 12
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.93 E-value=1.3e-25 Score=180.71 Aligned_cols=102 Identities=27% Similarity=0.407 Sum_probs=91.3
Q ss_pred cEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCce
Q 022394 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (298)
Q Consensus 91 W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~ 168 (298)
|+.|+.++||++|+.+.++++|.+++++|. +|+++|++|.|||+|+ |+.|.+ +++.|+||||||+||++||++
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~-----~g~~i~CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGF-----DGGVLTCRAHLWQFDADTGEG 75 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcc-----cCCEEEeCCcCCEEECCCccc
Confidence 899999999999999999998887777764 9999999999999997 998887 678999999999999999998
Q ss_pred ecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 169 RDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 169 ~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
.. |...+|++|+|++++|.|||++++..+
T Consensus 76 ~~------------~~~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 76 LN------------PRDCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred cC------------CCCCccceEeEEEECCEEEEeCCCcCc
Confidence 64 556789999999999999999986543
No 13
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.93 E-value=7.9e-26 Score=184.65 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=95.0
Q ss_pred CCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCC
Q 022394 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~t 165 (298)
.+.|+.|+.++||+ |+...+++.|++++|+|. +|+++|++|.|||+|+ |++|.+ .++.|+||||||+||. |
T Consensus 3 ~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~-----~~~~i~Cp~Hg~~fd~-~ 75 (116)
T cd03532 3 RNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSV-----EGGGLVCGYHGLEFDS-D 75 (116)
T ss_pred CCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcc-----cCCEEEeCCCCcEEcC-C
Confidence 56899999999999 889999999999999996 8999999999999997 999988 6789999999999995 8
Q ss_pred CceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 166 GAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 166 G~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
|+|+. .|..+. .|...+|++|+|++++|.|||++++.
T Consensus 76 G~~~~-~p~~~~----~~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 76 GRCVH-MPGQER----VPAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred CCEEe-CCCCCC----CCCccccccCCEEEECCEEEEEcCCc
Confidence 99997 444321 24567899999999999999999754
No 14
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=9.2e-26 Score=183.49 Aligned_cols=113 Identities=28% Similarity=0.416 Sum_probs=96.1
Q ss_pred cEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 91 WVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 91 W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
|+.||.++||+ +|+.+.++++|++++|+|+ +|+++|++|.|||+|+ |+.|.+. .++.|+||||||+||++ |+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~----~~~~i~Cp~Hg~~Fd~~-G~ 75 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGG----NAGRLVCPYHGWTYDLD-GK 75 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCC----CCCEEECCCCCCEECCC-Cc
Confidence 99999999999 9999999999999999997 9999999999999997 9888761 46899999999999996 99
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
|+. .|..+......+...+|++|+|++++|.|||+++++.+
T Consensus 76 ~~~-~P~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~ 116 (118)
T cd03469 76 LVG-VPREEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116 (118)
T ss_pred EEe-CCcccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence 997 44432211123445689999999999999999987643
No 15
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.93 E-value=2e-25 Score=178.41 Aligned_cols=100 Identities=24% Similarity=0.513 Sum_probs=87.2
Q ss_pred cEEceeCCCCCCCCeEEEEECCcEEEEEEeCC-eEEEEcCCCCCCcc--ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 91 WVPVVPLSALPKGERRVIIQDGETILLLWYKD-EVFAIENRSPAEGA--YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 91 W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g-~v~A~~n~CpH~Ga--Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
|+.||.++||++|+.+.+.++|++|+|+|.++ ++||++|.|||+|+ |++|.+... ..++.|+||||||+||++||+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~-~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDI-GGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEccc-CCCeEEECCCCCCEEEcCCCC
Confidence 99999999999999999999999999999865 99999999999984 788887311 123489999999999999999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEE
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~ 203 (298)
|+. .| ..+|++|+|++++|.|||+
T Consensus 80 ~~~-----------~p-~~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 80 CLE-----------DE-DVSVATFPVRVEDGEVYVK 103 (103)
T ss_pred ccC-----------CC-CccEeeEeEEEECCEEEEC
Confidence 986 34 4579999999999999984
No 16
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.93 E-value=1.8e-25 Score=179.75 Aligned_cols=101 Identities=39% Similarity=0.785 Sum_probs=90.2
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCC-Ccc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPA-EGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH-~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
+|+.||.++||+++..+.+.++|++|+|+|. +|++||++|.||| ++. |++|.+.+. ..+.+|.||+|+|+||++||
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~-~g~~~V~CPlH~~~f~L~tG 79 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDG-NGEPCVACPLHKWRFDLRTG 79 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEEC-TTEEEEEETTTTEEEETTTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccC-CCCEEEECCCCCCeEECCCc
Confidence 5999999999999999999999999999999 9999999999999 564 999999431 12248999999999999999
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEE
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~ 203 (298)
+|+. +...+|++|||++++|.|||.
T Consensus 80 ~~~~------------~~~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 80 ECLE------------DPDVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp EESS------------ECSEBSBEEEEEECTTEEEEE
T ss_pred CcCC------------CCCCcEEeEEEEEECCEEEEC
Confidence 9986 334789999999999999995
No 17
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.93 E-value=1.8e-25 Score=179.04 Aligned_cols=102 Identities=19% Similarity=0.483 Sum_probs=88.5
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCC-cc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAE-GA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~-Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
.|+.|+.++||++|+.+.+.++|++|+|+|. +|+++|++|.|||+ +. |++|.+.+.. .+..|+||||||+||++||
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~-~~~~i~Cp~Hg~~Fdl~tG 79 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQ-GELWVACPLHKRNFRLEDG 79 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCC-CcEEEECCcCCCEEEcCCc
Confidence 5999999999999999999999999999998 78999999999999 65 8999883210 1124999999999999999
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEEe
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRM 204 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l 204 (298)
+|+. +| ...|++|+|++++|.|||.+
T Consensus 80 ~~~~-----------~~-~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 80 RCLE-----------DD-SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred cccC-----------CC-CccEeeEeEEEECCEEEEeC
Confidence 9985 33 46899999999999999975
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.92 E-value=3.7e-25 Score=181.65 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=99.1
Q ss_pred ccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 90 NWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 90 ~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
+|+.|+.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|.|||+|+ |++|.. .++.|+||||||+||+ +|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~-----~~~~i~CP~Hgw~f~l-~G 74 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSG-----KKSCFVCPYHGWVYGL-DG 74 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCcc-----ccCEEEeCCCCCEEcC-CC
Confidence 599999999999 6778899999999999996 8999999999999997 998887 5679999999999999 79
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
+++. +|....+....+....|..++|++.+|+|||+++++
T Consensus 75 ~l~~-~P~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 75 SLTK-ATQATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred eEEe-CCCcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 9997 776655555556678899999999999999999975
No 19
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.92 E-value=3.8e-25 Score=178.85 Aligned_cols=100 Identities=19% Similarity=0.366 Sum_probs=88.1
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe--CCeEEEEcCCCCCCc-c-ccccccccccCCCC-eEEcCCcCcEEeCC
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEG-A-YSEGLINAKLTQDG-CIVCPTTESTFDLR 164 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~--~g~v~A~~n~CpH~G-a-Ls~G~v~g~~~~~~-~I~CP~HG~~Fdl~ 164 (298)
.|+.||.++||++|+.+.+.++|++|+|+|. +|++||++|.|||.| + |++|.+.+. .++ +|+||||||+||++
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~--~g~~~V~CP~H~~~Fdl~ 80 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEH--QGELWVASPLKKQRFRLS 80 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccC--CCeEEEECCCCCCEEECC
Confidence 5999999999999999999999999999994 899999999999987 4 999988311 112 59999999999999
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEE
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIR 203 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~ 203 (298)
||+|+. .| ..+|++|||++++|.|||.
T Consensus 81 TG~~~~-----------~~-~~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 81 DGLCME-----------DE-QFSVKHYDARVKDGVVQLR 107 (108)
T ss_pred CcccCC-----------CC-CccEeeEeEEEECCEEEEe
Confidence 999986 33 4689999999999999996
No 20
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.92 E-value=4.5e-25 Score=173.60 Aligned_cols=93 Identities=35% Similarity=0.604 Sum_probs=86.5
Q ss_pred EceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecc
Q 022394 93 PVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (298)
Q Consensus 93 ~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~ 171 (298)
.||.++||++|+.+.+.++|.+|+|+|.+|+++|++|+|||+|+ |+.|.+ .++.|+||||||+||++||+|+.
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~CP~Hg~~Fdl~tG~~~~- 75 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQGGEVHAIGAKCPHYGAPLAKGVL-----TDGRIRCPWHGACFNLRTGDIED- 75 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEECCEEEEEcCcCcCCCCccCCCeE-----eCCEEEcCCCCCEEECCCCcCcC-
Confidence 47899999999999999999999999999999999999999997 998888 67899999999999999999987
Q ss_pred cCCCccccccCCCCCCCcceeEEEECCeEE
Q 022394 172 YPNNPVLRALTPALSTLYIFPVKTDEKNIY 201 (298)
Q Consensus 172 ~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~ 201 (298)
.|...+|++|++++++|.||
T Consensus 76 ----------~p~~~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 76 ----------APALDSLPCYEVEVEDGRVY 95 (95)
T ss_pred ----------CCccCCcceEEEEEECCEEC
Confidence 56667899999999999997
No 21
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.92 E-value=5e-25 Score=183.52 Aligned_cols=113 Identities=14% Similarity=0.272 Sum_probs=95.9
Q ss_pred cEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 91 WVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 91 W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
|+.|++++||+ +|+.+.+.+++++|+|+|+ +|+++|+.|.|||+|+ |++|... .++.|+||||||+||+ +|+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~----~~~~l~CPyHgw~fdl-~G~ 75 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNG----NAKDFVCPYHQWNYSL-KGD 75 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccC----ccCEEECCCCCCEECC-CCC
Confidence 99999999999 6899999999999999996 8999999999999997 9887651 3468999999999999 699
Q ss_pred eecccCCCcccc-----------ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 168 VRDWYPNNPVLR-----------ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 168 ~~~~~P~~p~~~-----------~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
|+. +|....+. .+.+....|+.|+|++.+|+|||+++++.+
T Consensus 76 l~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 76 LQG-VPFRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred Eee-ccccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 998 77654321 123446789999999999999999998644
No 22
>PLN02518 pheophorbide a oxygenase
Probab=99.92 E-value=2.2e-24 Score=216.31 Aligned_cols=116 Identities=19% Similarity=0.315 Sum_probs=99.7
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe--CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEe
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~--~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fd 162 (298)
...+.|++||.++||++|+.+.+++.|++|||||+ +|+++|++|+|||||+ |++|.++ ++++|+||||||+||
T Consensus 86 ~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~----~~g~L~CpYHGW~Fd 161 (539)
T PLN02518 86 SWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRID----ENGHLQCSYHGWSFD 161 (539)
T ss_pred hhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceec----CCCEEEcCCCCCEEc
Confidence 56789999999999998999999999999999996 8999999999999997 9999983 367999999999999
Q ss_pred CCCCceecccCCCccccc----cCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 163 LRTGAVRDWYPNNPVLRA----LTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 163 l~tG~~~~~~P~~p~~~~----~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
+ +|+|+. +|..+..+. ..+...++++|||++++|+|||+++++
T Consensus 162 ~-~G~c~~-IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~ 208 (539)
T PLN02518 162 G-CGSCTR-IPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDEN 208 (539)
T ss_pred C-CCCeee-cccccccccccccccCcccccceEeEEEECCEEEEEeCCc
Confidence 9 699997 776432211 123355799999999999999999875
No 23
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.92 E-value=9.7e-25 Score=186.22 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=100.3
Q ss_pred CCC-CccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEE
Q 022394 86 GGG-ENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTF 161 (298)
Q Consensus 86 ~~~-~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~F 161 (298)
... +.|+.|++++||+ +|+.+.++++|++|+|+|+ +|+++|++|.|||+|+ |++|.. + .++.|+||||||+|
T Consensus 20 if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~-g---~~~~i~CP~Hgw~F 95 (150)
T cd03545 20 IFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERR-G---NDGSLTCVYHQWAY 95 (150)
T ss_pred hhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEeccccc-C---CCCEEECCCCCCEE
Confidence 554 8999999999999 6899999999999999996 8999999999999997 888764 2 46799999999999
Q ss_pred eCCCCceecccCCCcccc-------ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 162 DLRTGAVRDWYPNNPVLR-------ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 162 dl~tG~~~~~~P~~p~~~-------~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
|+ +|+|+. +|....+. ...+...+|+.|+|++.+|+|||+++++.+
T Consensus 96 dl-~G~~~~-ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~~ 148 (150)
T cd03545 96 DL-KGNLKG-VPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEVE 148 (150)
T ss_pred CC-CCCEEE-CccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCCC
Confidence 99 699998 77654321 134556789999999999999999997643
No 24
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.91 E-value=4.2e-24 Score=204.21 Aligned_cols=114 Identities=16% Similarity=0.171 Sum_probs=98.9
Q ss_pred CCCCCCccEEceeCCCC-CCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcE
Q 022394 84 GGGGGENWVPVVPLSAL-PKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTEST 160 (298)
Q Consensus 84 ~~~~~~~W~~V~~~~eL-~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~ 160 (298)
.....+.|++|+.++|| ++|+...++++|++|+|||+ +|+++|++|.|||+|+ |++|.+ +++.|+||||||+
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v-----~~g~L~CPYHGW~ 140 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKL-----VDGKAQCPYHGWE 140 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcc-----cCCEEEecCCCcE
Confidence 34567899999999999 58899999999999999997 8999999999999997 999998 6789999999999
Q ss_pred EeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 161 FDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 161 Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
||. +|+|+. +|..+. .+....+++|||++++|+|||++++..
T Consensus 141 FD~-~G~C~~-iP~~~~----~~~~~~v~tYPV~e~dGlVwVw~G~~~ 182 (394)
T PLN00095 141 YET-GGECAK-MPSCKK----FLKGVFADAAPVIERDGFIFLWAGESD 182 (394)
T ss_pred ECC-CCCEee-CCCccc----cccccccceEEEEEECCEEEEEeCCcc
Confidence 998 899997 665321 122356899999999999999998643
No 25
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.91 E-value=4.5e-24 Score=176.21 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=92.8
Q ss_pred CccEEceeCCCCCC-CCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCC
Q 022394 89 ENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (298)
Q Consensus 89 ~~W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~t 165 (298)
+.|+.|++++||++ |....+++++++|+|+|+ +|+++|++|.|||+|+ |++|.+. .+..|+||||||+|| .|
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~----~~~~i~Cp~Hgw~Fd-~t 75 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMG----NTSHFRCPYHGWTYR-NT 75 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccC----CCCEEECCcCCCEEC-CC
Confidence 36999999999996 677777899999999996 9999999999999997 9888762 236899999999999 59
Q ss_pred CceecccCCCccc-c-ccCCCCCCCcceeEE-EECCeEEEEeCCCC
Q 022394 166 GAVRDWYPNNPVL-R-ALTPALSTLYIFPVK-TDEKNIYIRMEGGA 208 (298)
Q Consensus 166 G~~~~~~P~~p~~-~-~~~p~~~~L~~ypV~-~~~g~V~V~l~~~~ 208 (298)
|+|+. +|..... + ...+....|+.|++. +.+|+|||+++++.
T Consensus 76 G~~~~-~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~ 120 (123)
T cd03535 76 GRLVG-VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKA 120 (123)
T ss_pred cCEee-CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCC
Confidence 99997 6654322 1 123346789999864 57999999999764
No 26
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.91 E-value=5.4e-24 Score=177.08 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=96.6
Q ss_pred CCCccEEceeCCCCCC-CCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 87 GGENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 87 ~~~~W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
..+.|+.|+.++||++ |....+++++++|+|+|+ +|+++|++|.|||+|+ |++|... .+..|+||||||+||+
T Consensus 5 ~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g----~~~~i~CP~Hgw~fd~ 80 (128)
T cd03472 5 FARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAG----NAKAFTCTYHGWAYDT 80 (128)
T ss_pred hhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCC----CcCEEECCcCCeEECC
Confidence 4678999999999995 666778899999999996 9999999999999997 9887651 3468999999999997
Q ss_pred CCCceecccCCCcc-cc-ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 164 RTGAVRDWYPNNPV-LR-ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 164 ~tG~~~~~~P~~p~-~~-~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
||+|+. +|..+. +. .+......|+...|.+.+|+|||+++++.+
T Consensus 81 -~G~~~~-~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 81 -AGNLVN-VPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred -CcCEEe-ccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 899997 776542 11 223345679999999999999999998753
No 27
>PLN02281 chlorophyllide a oxygenase
Probab=99.91 E-value=4.2e-24 Score=211.90 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=98.6
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
...+.|++|+.++||++|+.+.+++.|++|+|+|+ +|+++|++|+|||||+ |++|.+ +++.|+||||||+||.
T Consensus 216 ~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v-----~g~~L~CPYHGW~FD~ 290 (536)
T PLN02281 216 HLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTV-----NEGRIQCPYHGWEYST 290 (536)
T ss_pred hhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCcccccee-----eCCEEEeCCCCCEECC
Confidence 56789999999999999999999999999999997 8999999999999997 999998 6789999999999995
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
||+|+. +|.. .+...++++|||++++|+|||++++..
T Consensus 291 -dG~cv~-iP~~------~~~~~~l~sYPV~e~~GlVwV~lgd~~ 327 (536)
T PLN02281 291 -DGECKK-MPST------KLLKVKIKSLPCLEQEGMIWIWPGDEP 327 (536)
T ss_pred -CCCEee-CCCC------ccccCCcceEeEEEECCEEEEEeCCCC
Confidence 899997 5543 234578999999999999999998653
No 28
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.91 E-value=7.3e-24 Score=174.96 Aligned_cols=113 Identities=19% Similarity=0.126 Sum_probs=93.3
Q ss_pred cEEceeCCCCCC-CCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 91 WVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 91 W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
|+.||.++||++ |....+.+++++|+|+|+ +|+++|++|+|||+|+ |+.|... ....|+||||||+||+ +|+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~----~~~~i~Cp~Hgw~fd~-~G~ 75 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGG----NTQIHVCIYHGWAFRP-NGD 75 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCC----CcCEEECCcCCCEECC-CCc
Confidence 999999999996 667777899999999996 9999999999999997 8877651 2357999999999997 899
Q ss_pred eecccCCCcccc---ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 168 VRDWYPNNPVLR---ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 168 ~~~~~P~~p~~~---~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
++. +|....+. ...+...+|++|+|++.+|+|||+++++.+
T Consensus 76 ~~~-~p~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 76 FIG-APVEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred EEE-CCccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 997 66533221 123456789999999999999999998643
No 29
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=169.73 Aligned_cols=102 Identities=34% Similarity=0.690 Sum_probs=87.4
Q ss_pred CCccEEceeCCCCCCCCeEEEEECC-cEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCC-eEEcCCcCcEEeCC
Q 022394 88 GENWVPVVPLSALPKGERRVIIQDG-ETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDG-CIVCPTTESTFDLR 164 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~G-~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~-~I~CP~HG~~Fdl~ 164 (298)
...|+.+|.++||+++..+.+.+.+ +.+++++.+|++||++|+|||.|+ |++|.+ .++ .|+||+|+|.||++
T Consensus 2 ~~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v-----~~~~~i~Cp~H~a~Fdl~ 76 (106)
T COG2146 2 MMNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLV-----EGDETVVCPLHGARFDLR 76 (106)
T ss_pred CCceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEe-----CCCCEEECCccCCEEEcC
Confidence 4589999999999999999888855 455555679999999999999997 999999 454 69999999999999
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRME 205 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~ 205 (298)
||+|+. +|+...|++|+|++++|.|||+++
T Consensus 77 tG~~~~-----------~p~~~~l~~y~vrve~g~v~v~~~ 106 (106)
T COG2146 77 TGECLE-----------PPAGKTLKTYPVRVEGGRVFVDLD 106 (106)
T ss_pred CCceec-----------CCCCCceeEEeEEEECCEEEEecC
Confidence 999997 333213999999999999999874
No 30
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.90 E-value=1.7e-23 Score=164.44 Aligned_cols=95 Identities=37% Similarity=0.667 Sum_probs=80.7
Q ss_pred ccEEceeCCCCCC-CCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 90 NWVPVVPLSALPK-GERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 90 ~W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
+|+.|+.++||++ |..+.+.+++..+++.+.+|+++|++|.|||+|+ |+.|. ... .++.|+||||||+||++||+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~-~~~--~~~~i~Cp~Hg~~Fd~~tG~ 77 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDVGGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGP-FSE--DGGVIVCPCHGWRFDLDTGE 77 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEETTEEEEEEETTTEEEEEESB-TTTSBBGGCSS-EET--TTTEEEETTTTEEEETTTSB
T ss_pred CEEEeeEHHHCCCCCCEEEEEcCCcEEEEEeCCCCEEEEEccCCccceeEccee-ccc--ccCEEEeCCcCCEEeCCCce
Confidence 6999999999997 8888999955566666579999999999999997 98884 110 46899999999999999999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEK 198 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g 198 (298)
++. +|+..+|+.|+|+++++
T Consensus 78 ~~~-----------~p~~~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 78 CVG-----------GPAPRPLPLYPVKVEGD 97 (97)
T ss_dssp EEE-----------STTCSBSTEEEEEEETT
T ss_pred Eec-----------CCCCCCcCCCCeEEeCC
Confidence 998 77777999999999985
No 31
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.89 E-value=3.4e-23 Score=175.92 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=96.4
Q ss_pred CCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEE
Q 022394 85 GGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTF 161 (298)
Q Consensus 85 ~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~F 161 (298)
.+..+.|+.|++++||+ +|+.+.++++|++|+|+|+ +|+++|+.|.|||+|+ |+.+.. ++ .++.|+||||||+|
T Consensus 17 ~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~-g~--~~~~i~CP~Hgw~F 93 (146)
T cd03538 17 RLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGC-GN--TGKFFRCPYHAWSF 93 (146)
T ss_pred HHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccc-cc--cCCEEECCCCCCEE
Confidence 35678999999999999 7899999999999999997 8999999999999997 753332 11 35689999999999
Q ss_pred eCCCCceecccCCCcccc--ccC--CCCCCCcce-eEEEECCeEEEEeCCCC
Q 022394 162 DLRTGAVRDWYPNNPVLR--ALT--PALSTLYIF-PVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 162 dl~tG~~~~~~P~~p~~~--~~~--p~~~~L~~y-pV~~~~g~V~V~l~~~~ 208 (298)
|+ ||+++. +|....+. .+. +....|..+ .|++.+|+|||+++++.
T Consensus 94 d~-~G~~~~-~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~ 143 (146)
T cd03538 94 KT-DGSLLA-IPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSG 143 (146)
T ss_pred CC-CCCEEE-CCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCC
Confidence 98 899997 66543332 111 235789999 78999999999999764
No 32
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.89 E-value=5.2e-23 Score=197.74 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=101.0
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCC-CeEEcCCcCcEEe
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQD-GCIVCPTTESTFD 162 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~-~~I~CP~HG~~Fd 162 (298)
...++|+.||+++||++++++.+.++|++|||+|+ +|+++|+.|.|||||+ |++|.+ .+ +.|+||||||+||
T Consensus 23 ~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~-----~~~~~l~CpyHgW~y~ 97 (367)
T COG4638 23 IFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRV-----GGKGRLTCPYHGWTYD 97 (367)
T ss_pred hhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccC-----CCCceEecCCCceEEC
Confidence 34559999999999998899999999999999998 9999999999999998 999999 45 8999999999999
Q ss_pred CCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCCC
Q 022394 163 LRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGASS 210 (298)
Q Consensus 163 l~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~~ 210 (298)
+ +|+|+. +|....-..+.+....|+.|+|++..|+|||++++..++
T Consensus 98 ~-~G~~~~-ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~ 143 (367)
T COG4638 98 L-DGRLRG-VPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPA 143 (367)
T ss_pred C-CCcEec-CCccccCCCCCHhhCCccccceEEEccEEEEecCCCccC
Confidence 9 799997 774311111233456899999999999999999998644
No 33
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.88 E-value=4.2e-22 Score=164.65 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=90.8
Q ss_pred cEEceeCCCCCC-CCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 91 WVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 91 W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
|+.||+++||++ |+...++++|++|+|+|. +|+++|+.|.|||+|+ |++|.. + .++.|+||||||+|| .||+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~-~---~~~~i~CP~Hg~~Fd-~~G~ 75 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQ-G---NKGTFTCPFHGWTFS-NTGK 75 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccc-c---CCCEEECcCCCCEec-CCcc
Confidence 999999999995 778888999999999997 8999999999999997 888776 2 456999999999999 5999
Q ss_pred eecccCCCcc--cc-ccCCC-CCCCccee-EEEECCeEEEEeCCCCC
Q 022394 168 VRDWYPNNPV--LR-ALTPA-LSTLYIFP-VKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 168 ~~~~~P~~p~--~~-~~~p~-~~~L~~yp-V~~~~g~V~V~l~~~~~ 209 (298)
|+. .|..+. ++ .+.+. ...|..++ ++..+|+||++++++.+
T Consensus 76 ~~~-~p~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 76 LLK-VKDPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred EEE-CCcccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 997 554321 11 12232 46788886 45568999999998643
No 34
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.87 E-value=1.3e-21 Score=154.30 Aligned_cols=94 Identities=44% Similarity=0.743 Sum_probs=85.5
Q ss_pred cEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCce
Q 022394 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (298)
Q Consensus 91 W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~ 168 (298)
|+.++..++|+++....+.+.+.+++|+|. +|+++|++|.|||+|+ |..+.+ .++.|+||+|||+||++||++
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~-----~~~~i~Cp~H~~~f~~~~G~~ 75 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEG-----EDGCIVCPCHGSRFDLRTGEV 75 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCcc-----CCCEEEeCCCCCEEeCCCccC
Confidence 899999999999999999999999999997 6799999999999996 877775 678999999999999999999
Q ss_pred ecccCCCccccccCCCCCCCcceeEEEEC-CeE
Q 022394 169 RDWYPNNPVLRALTPALSTLYIFPVKTDE-KNI 200 (298)
Q Consensus 169 ~~~~P~~p~~~~~~p~~~~L~~ypV~~~~-g~V 200 (298)
+. +|+...|++|++++++ +.|
T Consensus 76 ~~-----------~p~~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 76 VS-----------GPAPRPLPKYPVKVEGDGVV 97 (98)
T ss_pred cC-----------CCCCCCcCEEEEEEeCCceE
Confidence 87 6778899999999994 444
No 35
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.84 E-value=3.4e-21 Score=189.33 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=110.0
Q ss_pred eeeecccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccc-
Q 022394 64 KLTCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSE- 139 (298)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~- 139 (298)
+-+..+++...++.++. ....+.|+.||+.+||+ +|+.+++.+++++|+|+|+ +|+++|+.|+|+|||+ |+.
T Consensus 16 v~~~~ytd~~if~~E~~----~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~ 91 (438)
T TIGR03228 16 IARDMFTEPELFDLEME----LIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLTRV 91 (438)
T ss_pred cChheECCHHHHHHHHH----HHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCccccC
Confidence 33455777778887776 35678999999999999 6999999999999999997 9999999999999998 875
Q ss_pred cccccccCCCCeEEcCCcCcEEeCCCCceecccCCCcccc-ccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 140 GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLR-ALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 140 G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~-~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
+.. ....++||||||+|++ +|+|+. +|...... .+......|+.+.|++.+|+||++++++.
T Consensus 92 ~~G-----n~~~~~CPYHgW~y~~-dG~L~~-vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a 154 (438)
T TIGR03228 92 GKG-----NQSTFTCPFHAWCYKS-DGRLVK-VKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAA 154 (438)
T ss_pred Ccc-----ccCEEEcCCCCCcccC-CCceee-cCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCC
Confidence 554 4568999999999998 799998 77543221 22345677888999999999999999864
No 36
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.84 E-value=1.6e-20 Score=155.96 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=84.6
Q ss_pred EEceeCCCCCCCCeEEEEECC--cEEEEEEe----------CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcC
Q 022394 92 VPVVPLSALPKGERRVIIQDG--ETILLLWY----------KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTE 158 (298)
Q Consensus 92 ~~V~~~~eL~~g~~~~v~~~G--~~lvl~R~----------~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG 158 (298)
+.||.+++|++|+.+.+.+.+ ++++|+|. +|+++|++|.|||+|+ |+.+. +++.|+|||||
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~------~~~~v~CP~Hg 77 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP------SNKTFVCPCHF 77 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc------cCCEEEccCcC
Confidence 568899999999999999887 89999997 6999999999999997 87754 36799999999
Q ss_pred cEEeCC-CCceecccCCCccccccCCCCCCCcceeEEEE--CCeEEEE
Q 022394 159 STFDLR-TGAVRDWYPNNPVLRALTPALSTLYIFPVKTD--EKNIYIR 203 (298)
Q Consensus 159 ~~Fdl~-tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~--~g~V~V~ 203 (298)
|+||++ +|+++. +|+..+|++|+++++ +|.|||.
T Consensus 78 ~~Fdl~tgG~~~~-----------gPa~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 78 SQFDPARGGQMVS-----------GQATQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CEEeCCCCCeEEc-----------CCCCCCCCeEEEEEECCCCEEEEE
Confidence 999996 579987 688889999999999 9999984
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.82 E-value=5.3e-20 Score=144.50 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred ceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecc
Q 022394 94 VVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (298)
Q Consensus 94 V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~ 171 (298)
+++++||++|+.+.+.++|++|+|+|. +|+++|++|.|||+|+ |+.|.. ++.|+||||||+|| .||+++.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~------~~~i~CP~Hg~~Fd-~~G~~~~- 73 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA------EKSWDCPCHGSRFS-YDGEVIE- 73 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC------CCEEECCCCCCEEC-CCCcEee-
Confidence 678899999999999999999999997 9999999999999997 876653 46999999999999 5999997
Q ss_pred cCCCccccccCCCCCCCcceeEEEEC
Q 022394 172 YPNNPVLRALTPALSTLYIFPVKTDE 197 (298)
Q Consensus 172 ~P~~p~~~~~~p~~~~L~~ypV~~~~ 197 (298)
.|+...|++|+|+-.+
T Consensus 74 ----------~Pa~~~l~~y~v~~~~ 89 (91)
T cd03477 74 ----------GPAVSGLKPADDAPID 89 (91)
T ss_pred ----------CCCCCCCCeeEeeccc
Confidence 6888899999998654
No 38
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.81 E-value=6e-20 Score=180.49 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=106.1
Q ss_pred eecccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-cccccc
Q 022394 66 TCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLI 142 (298)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v 142 (298)
...+++...++.++. ....+.|+.||+.+||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|+|||+ |++|..
T Consensus 18 ~~~Ytd~~~f~~E~~----~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~~~ 93 (433)
T TIGR03229 18 REMFTDPELFDLEMK----HIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLCRHKR 93 (433)
T ss_pred hhhcCCHHHHHHHHH----HHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCcccccc
Confidence 444677777777665 35677899999999999 7788999999999999997 9999999999999997 887765
Q ss_pred ccccCCCCeEEcCCcCcEEeCCCCceecccCCCcc--ccc-cCC-CCCCCccee-EEEECCeEEEEeCCCCC
Q 022394 143 NAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPV--LRA-LTP-ALSTLYIFP-VKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 143 ~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~--~~~-~~p-~~~~L~~yp-V~~~~g~V~V~l~~~~~ 209 (298)
| ....|+||||||+||. ||+|+. +|.... ++. +.. ....|..++ ++..+|+|||+++++.+
T Consensus 94 -g---~~~~~~CPyHgW~f~~-~G~l~~-vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~ 159 (433)
T TIGR03229 94 -G---NKTTYTCPFHGWTFNN-SGKLLK-VKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVL 159 (433)
T ss_pred -c---CCCEEEcCCCCCEecC-CcceEe-CCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCC
Confidence 2 4568999999999996 899998 776321 111 112 245788886 55569999999998754
No 39
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.80 E-value=2.4e-19 Score=143.92 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCCCCCCeEEEEE-CCcEEEEEEeCCeEEEEcCCCCCCcc-cccc--ccccccCCCCeEEcCCcCcEEeCCCCceec
Q 022394 97 LSALPKGERRVIIQ-DGETILLLWYKDEVFAIENRSPAEGA-YSEG--LINAKLTQDGCIVCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 97 ~~eL~~g~~~~v~~-~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G--~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~ 170 (298)
+.||++|..+.+.+ +|++|+|+|.+|++||++|+|||+|+ |++| .+ +++.|+||+|+|+||++||+++.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~~G~~~A~~n~CpH~g~pL~~g~g~~-----~g~~V~CP~Hg~~FDLrTG~~~~ 86 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKSKSELKACKNQCKHQGGLFIKDIEDL-----DGRTVRCTKHNWKLDVSTMKYVN 86 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEECCEEEEEcCCCCCCCccccCCcceE-----eCCEEEeCCCCCEEEcCCCCCcc
Confidence 48999999999999 99999999999999999999999986 8874 46 67899999999999999999986
No 40
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.79 E-value=5.3e-19 Score=147.28 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=80.8
Q ss_pred EEceeCCCCCCCCeEEEEECC--cEEEEEE----------eCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcC
Q 022394 92 VPVVPLSALPKGERRVIIQDG--ETILLLW----------YKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTE 158 (298)
Q Consensus 92 ~~V~~~~eL~~g~~~~v~~~G--~~lvl~R----------~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG 158 (298)
+.||+++||++|+.+.+.+.+ ..++++| .+|+++|++|.|||+|+ |+.+. ++..|.|||||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~------~~~~i~CP~Hg 80 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA------DNKTFNCPCHF 80 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc------CCCEEEcCCCC
Confidence 568999999999999999765 4778887 58999999999999997 87653 46899999999
Q ss_pred cEEeCCC-CceecccCCCccccccCCCCCCCcceeEEEE-CCeEE
Q 022394 159 STFDLRT-GAVRDWYPNNPVLRALTPALSTLYIFPVKTD-EKNIY 201 (298)
Q Consensus 159 ~~Fdl~t-G~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~-~g~V~ 201 (298)
|+||++| |+++. +|+..+|++|+|+++ +|.||
T Consensus 81 a~Fdl~tgG~~~~-----------gP~~~~L~~y~v~v~~~G~V~ 114 (129)
T TIGR02694 81 SVFDPEKGGQQVW-----------GQATQNLPQIVLRVADNGDIF 114 (129)
T ss_pred CEECCCCCCcEEC-----------CCCCCCCCeeEEEEECCCeEE
Confidence 9999987 59986 677889999999997 58898
No 41
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.76 E-value=4.9e-18 Score=140.71 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCCCeEE--EEECCcEEEEEEeCCeE--EEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecccCCC
Q 022394 101 PKGERRV--IIQDGETILLLWYKDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNN 175 (298)
Q Consensus 101 ~~g~~~~--v~~~G~~lvl~R~~g~v--~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~ 175 (298)
.+|+... +..++..|+|++.+|++ ||++|.|||+|+ |..+. .++.|+||+|||+|| .||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~------~~~~i~CP~Hg~~Fd-~tG~~~~----- 88 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNA------AENKFKCPCHGSQYD-ATGKVVR----- 88 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccC------CCCEEEcCCCCCEEC-CCCCEec-----
Confidence 3455444 44677788888889977 899999999997 76654 256999999999999 5999987
Q ss_pred ccccccCCCCCCCcceeEEEECCeEEEEeCC
Q 022394 176 PVLRALTPALSTLYIFPVKTDEKNIYIRMEG 206 (298)
Q Consensus 176 p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~ 206 (298)
+|+..+|++|+|++++|.|||.+-.
T Consensus 89 ------gPa~~~L~~y~V~vedg~I~V~~~~ 113 (126)
T cd03471 89 ------GPAPLSLALVHATVDDDKVVLSPWT 113 (126)
T ss_pred ------CCCCCCCceEeEEEECCEEEEEECc
Confidence 6788899999999999999998654
No 42
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.74 E-value=1.2e-17 Score=138.76 Aligned_cols=90 Identities=23% Similarity=0.302 Sum_probs=79.4
Q ss_pred eCCCCCCCCeEEEEECCcEEEEEEe-----------------------------CCeEEEEcCCCCCCcc-ccccccccc
Q 022394 96 PLSALPKGERRVIIQDGETILLLWY-----------------------------KDEVFAIENRSPAEGA-YSEGLINAK 145 (298)
Q Consensus 96 ~~~eL~~g~~~~v~~~G~~lvl~R~-----------------------------~g~v~A~~n~CpH~Ga-Ls~G~v~g~ 145 (298)
.+++|++|+.+.++..|++|+|+|. +++++|+.+.|||+|+ +..+..
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~--- 81 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAG--- 81 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccC---
Confidence 5689999999999999999999985 6799999999999997 655543
Q ss_pred cCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEEC-CeEEE
Q 022394 146 LTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDE-KNIYI 202 (298)
Q Consensus 146 ~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~-g~V~V 202 (298)
.++.+.||||||+||+ +|+.+. +|+.++|++|++++++ +.|+|
T Consensus 82 --~~~~~~CPcHgs~Fdl-~G~~~~-----------gPa~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 82 --DYGGFFCPCHGSHYDA-SGRIRK-----------GPAPLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred --CCCEEEecCcCCEECC-CCeEec-----------CCCCCCCCeeeEEEecCCEEEe
Confidence 4689999999999999 699987 6888999999999987 67765
No 43
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.68 E-value=2.9e-16 Score=137.61 Aligned_cols=86 Identities=21% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCCCeEEEE-ECCcE-EEEEEeCCeE--EEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecccCCC
Q 022394 101 PKGERRVII-QDGET-ILLLWYKDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNN 175 (298)
Q Consensus 101 ~~g~~~~v~-~~G~~-lvl~R~~g~v--~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~ 175 (298)
++|+.+.+. +.|.. +++.+.+|++ ||+++.|||+|+ +..+.. ++.+.||+||++|| .||+++.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~------~~~~~CP~Hgs~Fd-~tG~~~~----- 140 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSG------ENKFQCPCHGSQYD-ATGKVVR----- 140 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccC------CCEEEecCcCCEEC-CCCCCcc-----
Confidence 678777776 66766 7777789999 788999999998 766653 46999999999999 6999987
Q ss_pred ccccccCCCCCCCcceeEEEECCeEEEEe
Q 022394 176 PVLRALTPALSTLYIFPVKTDEKNIYIRM 204 (298)
Q Consensus 176 p~~~~~~p~~~~L~~ypV~~~~g~V~V~l 204 (298)
+|+..+|+.|+|++++|.|+|.+
T Consensus 141 ------gPa~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 141 ------GPAPLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred ------CCCCCCCCeEeEEEECCEEEEEE
Confidence 68889999999999999999987
No 44
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.60 E-value=5.3e-15 Score=129.23 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=80.3
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEe-----------------------------------CCeEEEEcCCCCC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-----------------------------------KDEVFAIENRSPA 133 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-----------------------------------~g~v~A~~n~CpH 133 (298)
..|+.| .+++|++|+.+.++++|++|+|+|. +++++|+.+.|||
T Consensus 39 ~~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH 117 (174)
T TIGR01416 39 GAPTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTH 117 (174)
T ss_pred CCcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCC
Confidence 368999 8999999999999999999999986 3799999999999
Q ss_pred Ccc--ccccccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCe
Q 022394 134 EGA--YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKN 199 (298)
Q Consensus 134 ~Ga--Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~ 199 (298)
+|+ +..+... .++.+.|||||++||+ +|+++. +|+..+|++|+++++++.
T Consensus 118 ~Gc~~~~~~~~~----~~~~~~CPcHgs~Fd~-~G~~~~-----------gpa~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 118 LGCIPTYGPEEG----DKGGFFCPCHGSHYDT-AGRVRK-----------GPAPLNLPVPPYKFLSDT 169 (174)
T ss_pred CCCccccccCCC----CCCEEEeCCCCCEECC-CCcEec-----------CCCCCCCCCCCEEEcCCC
Confidence 996 3333330 2468999999999999 699987 788999999999998764
No 45
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.31 E-value=5.6e-12 Score=109.41 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCCCCcc-ccc---------------cccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCC
Q 022394 121 KDEVFAIENRSPAEGA-YSE---------------GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPA 184 (298)
Q Consensus 121 ~g~v~A~~n~CpH~Ga-Ls~---------------G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~ 184 (298)
+++++|+++.|||+|+ +.. |.. .++.|.||||||+||+++|..+.+ +|+
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~-----~~~~i~CPcHgS~FD~~tGg~v~~----------GPA 138 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLAS-----KGAVIHCCCHGSTYDPYKGGVVLT----------GPA 138 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccc-----cCCEEEcCCCCCEEeCCCCCeEcC----------CCC
Confidence 7899999999999997 642 222 568999999999999988864431 688
Q ss_pred CCCCcceeEEEEC--CeEEE
Q 022394 185 LSTLYIFPVKTDE--KNIYI 202 (298)
Q Consensus 185 ~~~L~~ypV~~~~--g~V~V 202 (298)
.++|+.|++++++ |.||.
T Consensus 139 ~~pLp~~~L~~d~~~d~iyA 158 (171)
T cd03475 139 PRPLPAVILEYDSSTDDLYA 158 (171)
T ss_pred CCCcCEeEEEEeCCCCcEEE
Confidence 8999999999994 66775
No 46
>PHA02337 putative high light inducible protein
Probab=99.30 E-value=1.2e-12 Score=83.93 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 281 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~ 281 (298)
|+..+|.||||+||+||++++++|++||+++-+
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 577899999999999999999999999999865
No 47
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.89 E-value=3.7e-09 Score=92.38 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=54.3
Q ss_pred eEEEEcCCCCCCcc-ccc-cccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeE
Q 022394 123 EVFAIENRSPAEGA-YSE-GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNI 200 (298)
Q Consensus 123 ~v~A~~n~CpH~Ga-Ls~-G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V 200 (298)
++.|+...|+|+|| ..- +.. ..+.+.|||||++||. +|+++. +|+.++|+.++++.+++.+
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~-----~~~~~~CPCHGS~yd~-~g~vv~-----------GPA~~~L~~~~~~~~~d~~ 162 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAG-----AEGGFFCPCHGSRYDP-DGGVVK-----------GPAPRPLPIPPLEYDSDKL 162 (177)
T ss_pred cEEEEeeeccCCCCccCcccCC-----CCCeEEccCCCCeEcC-CCCeeC-----------CCCCCCcCCceEEEeCCce
Confidence 57799999999998 432 112 4689999999999999 699887 8999999999999998855
Q ss_pred EE-EeCCC
Q 022394 201 YI-RMEGG 207 (298)
Q Consensus 201 ~V-~l~~~ 207 (298)
++ .++..
T Consensus 163 ~~~~~~~~ 170 (177)
T COG0723 163 YLIGLGTE 170 (177)
T ss_pred EEEEeccc
Confidence 44 44443
No 48
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.88 E-value=9.6e-10 Score=98.43 Aligned_cols=39 Identities=38% Similarity=0.647 Sum_probs=35.5
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcccccccch
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGF 285 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g~ 285 (298)
.|++.. +|++|||+|||||++++++|++||+|+++|+|-
T Consensus 156 rf~l~~-aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 156 RFHLPE-AELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred hccCch-hHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 456655 899999999999999999999999999999975
No 49
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.74 E-value=4.5e-09 Score=90.17 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=32.2
Q ss_pred eecccchhHHHHHHHHHHHHHHHhh-Ccccccccch
Q 022394 251 VTSELINGKAAAIGFLLLLDFELLT-GKGLLKGTGF 285 (298)
Q Consensus 251 ~~aE~~NGR~Am~g~~~~~~~e~~t-g~~~l~~~g~ 285 (298)
+..|.||||+||+||+++++.|++| |+|+|+|+++
T Consensus 136 K~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 3449999999999999999999999 9999999874
No 50
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.59 E-value=1.1e-07 Score=89.66 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=52.0
Q ss_pred CCeEEEEcCCCCCCcc-ccc------ccc------------------ccccCC---CCeEEcCCcCcEEeCCC-Cceecc
Q 022394 121 KDEVFAIENRSPAEGA-YSE------GLI------------------NAKLTQ---DGCIVCPTTESTFDLRT-GAVRDW 171 (298)
Q Consensus 121 ~g~v~A~~n~CpH~Ga-Ls~------G~v------------------~g~~~~---~~~I~CP~HG~~Fdl~t-G~~~~~ 171 (298)
++.+.||...|+|+|| +.. +.+ .+. .+ .+++.|||||++||+.+ |+++.
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~CPCHgS~FD~~~gg~Vv~- 252 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAA-KQANVPALIHCDCHGSTYDPYHGAAVLT- 252 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhh-hccCCCCeEECCCCCCEECCCCCCceeC-
Confidence 5789999999999997 521 110 000 01 14899999999999976 47876
Q ss_pred cCCCccccccCCCCCCCcceeEEEEC--CeEEE
Q 022394 172 YPNNPVLRALTPALSTLYIFPVKTDE--KNIYI 202 (298)
Q Consensus 172 ~P~~p~~~~~~p~~~~L~~ypV~~~~--g~V~V 202 (298)
+|+.++|..+++++++ |.||+
T Consensus 253 ----------GPA~rpLp~i~l~~d~~~~~l~A 275 (321)
T TIGR03171 253 ----------GPTVRPLPAVILEWDSSTDYLYA 275 (321)
T ss_pred ----------CCCCCCCCcceEEEeCCCCeEEE
Confidence 8999999999999983 55555
No 51
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.41 E-value=5.4e-07 Score=79.36 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=54.2
Q ss_pred eCCCCCCCCeEEEEECCcEEEEEEe-C--------------------------CeEEEEcCCCCCCccccccccccccCC
Q 022394 96 PLSALPKGERRVIIQDGETILLLWY-K--------------------------DEVFAIENRSPAEGAYSEGLINAKLTQ 148 (298)
Q Consensus 96 ~~~eL~~g~~~~v~~~G~~lvl~R~-~--------------------------g~v~A~~n~CpH~GaLs~G~v~g~~~~ 148 (298)
.++++|+|....++-.|+++++-+. . -+++++-..|+|.||..-+.- | +
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~A-G---d 166 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANA-G---D 166 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccc-c---c
Confidence 4679999999999999999998532 2 246899999999998321111 1 2
Q ss_pred CCeEEcCCcCcEEeCCCCceec
Q 022394 149 DGCIVCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 149 ~~~I~CP~HG~~Fdl~tG~~~~ 170 (298)
.+-..|||||+.||. .|++..
T Consensus 167 ~gg~~CPCHGSHYda-sGRIrk 187 (210)
T KOG1671|consen 167 YGGYYCPCHGSHYDA-SGRIRK 187 (210)
T ss_pred cCceecccccccccc-cCceec
Confidence 356999999999998 799987
No 52
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.21 E-value=0.00011 Score=62.81 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=25.0
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHH
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFEL 273 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~ 273 (298)
..+.++..+|++|||+||+||+..+++|.
T Consensus 128 ~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 128 EEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677888999999999999999998873
No 53
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.12 E-value=0.00031 Score=69.68 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=29.7
Q ss_pred CCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceec
Q 022394 133 AEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 133 H~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~ 170 (298)
|.|+ |..|.. ..++++|||||.+|+++||.+.+
T Consensus 1 hygapl~~g~~-----s~g~v~cpwhgacfn~~~gdied 34 (478)
T KOG1336|consen 1 HYGAPLAKGVL-----SRGRVRCPWHGACFNLSTGDIED 34 (478)
T ss_pred CCCcchhhccc-----cCCcccccccceeecCCcCchhh
Confidence 7886 988866 67999999999999999999887
No 54
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=97.03 E-value=0.00016 Score=61.70 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=30.1
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKG 278 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~ 278 (298)
.+.|...+|++|||+||+|++..++.|+.++.+
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 567888999999999999999999999998854
No 55
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=96.93 E-value=0.00032 Score=64.38 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.8
Q ss_pred eeecccchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 250 NVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 250 ~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
.+.+|+-||||||++|+..++++.+||+|.+.+++
T Consensus 160 ~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~ 194 (246)
T PLN00100 160 MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLK 194 (246)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 45569999999999999999999999999998864
No 56
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.92 E-value=0.00053 Score=61.80 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.1
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 281 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~ 281 (298)
....+|+-|||+||+|++..+..|.+||+|++.
T Consensus 176 ~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 176 KKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 344569999999999999999999999999863
No 57
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=96.91 E-value=0.00045 Score=63.83 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.8
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
-.+.+|+-|||+||++++..++.|++||+|++.++
T Consensus 199 ~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL 233 (252)
T PLN00147 199 DWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNL 233 (252)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 34557999999999999999999999999999887
No 58
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=96.55 E-value=0.001 Score=61.13 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.5
Q ss_pred ceeecccchhHHHHHHHHHHHHHH-HhhCccccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFE-LLTGKGLLKGT 283 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e-~~tg~~~l~~~ 283 (298)
-.+.+|+-||||||++++..++.| .+||+|.+.++
T Consensus 185 ~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL 220 (243)
T PLN00099 185 EYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 220 (243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHH
Confidence 345569999999999999999999 57899999885
No 59
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.51 E-value=0.0008 Score=62.09 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=31.3
Q ss_pred eeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 250 NVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 250 ~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
.+-+|+-||||||++|+..++++++||+|.+.++
T Consensus 200 ~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL 233 (250)
T PLN00101 200 AKEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 233 (250)
T ss_pred HHHHHHhhcchHHHHHhhHhheehccCCChHHHH
Confidence 4556999999999999999999999999999887
No 60
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.48 E-value=0.0012 Score=61.36 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=29.2
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 281 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~ 281 (298)
+...+|+.|||+||+|++..++.|+++++|++.
T Consensus 84 ~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 84 WLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred HHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 445779999999999999999999999888764
No 61
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=96.46 E-value=0.0013 Score=61.17 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.7
Q ss_pred ccceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 247 fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
+-..+.+|+-|||+||++++..++.+++||+|.+.++
T Consensus 203 ~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL 239 (262)
T PLN00025 203 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 239 (262)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHH
Confidence 3345567999999999999999999999999999886
No 62
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=96.39 E-value=0.0014 Score=60.48 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.3
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 280 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l 280 (298)
.+-+...+|+.|||+||+|++..++.|++++.|++
T Consensus 87 ~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 87 NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 35566788999999999999999999999999876
No 63
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=96.34 E-value=0.0015 Score=60.66 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=32.0
Q ss_pred cceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 248 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 248 gf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
--...+|+-|||+||++++..++.|++||+|.+.++
T Consensus 208 ~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L 243 (262)
T PLN00048 208 KELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNL 243 (262)
T ss_pred HHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHH
Confidence 345567999999999999999999999999998885
No 64
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=96.25 E-value=0.0021 Score=61.11 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=31.9
Q ss_pred cceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 248 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 248 gf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
-....+|+-|||+||+|++..++.|.+||+|.+.++
T Consensus 271 ~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL 306 (324)
T PLN00171 271 EDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNL 306 (324)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHH
Confidence 344556999999999999999999999999998885
No 65
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=96.22 E-value=0.0022 Score=59.74 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.8
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
..+.+|+-|||+||++++..++.+.+||+|.+.++
T Consensus 214 ~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL 248 (267)
T PLN00098 214 VLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENL 248 (267)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHH
Confidence 34557999999999999999999999999999887
No 66
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=96.11 E-value=0.0028 Score=59.52 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=31.4
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
....+|+-|||+||++++..++.+.+||+|.+..+
T Consensus 234 ~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL 268 (286)
T PLN00187 234 TLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 268 (286)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 34567999999999999999999999999998765
No 67
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=96.11 E-value=0.0024 Score=58.71 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=33.0
Q ss_pred ccceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 247 fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
+-..+.+|+-|||+||++++..++.+.+||+|.+.++
T Consensus 194 ~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL 230 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNL 230 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHH
Confidence 4445667999999999999999999999999999886
No 68
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=96.04 E-value=0.0035 Score=56.20 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=24.7
Q ss_pred eecccchhHHHHHHHHHHHHHHHhhCc
Q 022394 251 VTSELINGKAAAIGFLLLLDFELLTGK 277 (298)
Q Consensus 251 ~~aE~~NGR~Am~g~~~~~~~e~~tg~ 277 (298)
..+|+-||||||||++..+..|.++|.
T Consensus 169 ~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 169 RAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 346999999999999999999999996
No 69
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=96.00 E-value=0.0022 Score=59.80 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=31.6
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 281 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~ 281 (298)
.+-+...+|+.|||+||+|++..++.|++++.|++.
T Consensus 96 ~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 96 LLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 456778889999999999999999999999887753
No 70
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=95.68 E-value=0.003 Score=58.41 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHHhhCccccc
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 281 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~ 281 (298)
..+.+...+|+.|||+||+|++..++.|+++|..++.
T Consensus 90 e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 90 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 3466677889999999999999999999999887654
No 71
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=95.50 E-value=0.004 Score=58.47 Aligned_cols=31 Identities=35% Similarity=0.333 Sum_probs=26.9
Q ss_pred ccceeecccchhHHHHHHHHHHHHHHHhhCc
Q 022394 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGK 277 (298)
Q Consensus 247 fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~ 277 (298)
+-+...+|+.|||+||+|++.+++.|+++|.
T Consensus 130 l~r~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 130 LQRFRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 3456777999999999999999999998764
No 72
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=95.49 E-value=0.0047 Score=56.81 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.6
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGL 279 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~ 279 (298)
.+.+...+|+.|||+||+|++.+++.|++++.|+
T Consensus 78 ~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 78 MLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred HHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4667788899999999999999999999998766
No 73
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=95.42 E-value=0.0043 Score=57.67 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=29.8
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGL 279 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~ 279 (298)
.+.+...+|+.|||+||+|++..++.|++++.|+
T Consensus 87 ~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 87 TFARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 4666778899999999999999999999987655
No 74
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=95.18 E-value=0.0068 Score=57.76 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=29.5
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGL 279 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~ 279 (298)
.+.+...+|+.|||+||+|++..++.|++++.+.
T Consensus 144 ~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 144 AFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred HHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 4667788899999999999999999999876554
No 75
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=95.02 E-value=0.0069 Score=56.02 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=29.8
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGL 279 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~ 279 (298)
.+-+...+|+.|||+||+|++..++.|+++..|+
T Consensus 79 ~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 79 SLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 4667788899999999999999999999987654
No 76
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=94.45 E-value=0.015 Score=53.91 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccceeecccchhHHHHHHHHHHHHHHHhhCcccccccch
Q 022394 247 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGF 285 (298)
Q Consensus 247 fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g~ 285 (298)
+...+.+|+=|||+||++|+..+++ ..||+|.|..+||
T Consensus 218 ~~~lk~kEIKnGRLAMlA~lGf~~Q-a~~g~~p~~~l~~ 255 (255)
T PLN00170 218 LERLKLAEIKHARLAMVAMLIFYFE-AGQGKTPLGALGL 255 (255)
T ss_pred HHHHHHHHHhhhHHHHHHHHhHhee-eccCCCchhhhcC
Confidence 4456778999999999999997554 4899999999886
No 77
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=93.39 E-value=0.029 Score=51.67 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.3
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhC
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTG 276 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg 276 (298)
.+.+...+|+.|||+||+|++..|+.|+++.
T Consensus 78 ~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 78 NLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 4677788999999999999999999999653
No 78
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=93.16 E-value=0.031 Score=51.49 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=26.5
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhh
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLT 275 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~t 275 (298)
.+.+...+|+.|||+||+|++..++.|++.
T Consensus 69 ~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 69 TLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 456677889999999999999999999864
No 79
>PLN02449 ferrochelatase
Probab=93.07 E-value=0.062 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhCcccccc
Q 022394 260 AAAIGFLLLLDFELLTGKGLLKG 282 (298)
Q Consensus 260 ~Am~g~~~~~~~e~~tg~~~l~~ 282 (298)
+||+||+++|+.|+++|+|.|++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999999985
No 80
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=92.18 E-value=0.054 Score=48.90 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKG 278 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~ 278 (298)
.+-+...+|+-|||+||++++..++.|.++.-|
T Consensus 71 ~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 71 FLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 356777889999999999999999999976443
No 81
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=78.22 E-value=0.3 Score=43.89 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=24.3
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHH
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFEL 273 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~ 273 (298)
.+-+...+|+-|||+||++++..++.|.
T Consensus 60 ~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 60 KFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4555677899999999999999999996
No 82
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=67.89 E-value=3 Score=33.92 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=18.1
Q ss_pred ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 137 YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 137 Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
|..|.++- ..+...||+||--.+-
T Consensus 76 L~~G~LC~---RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 76 LPNGGLCP---RRDRKKCPFHGKIIPR 99 (110)
T ss_pred CCCCCcCC---ccCcccCCCCCcccCC
Confidence 66777753 4578899999987764
No 83
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=66.65 E-value=63 Score=25.90 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCCCCCeEEEEE--CCcE--EEEEEe-CCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeCCCCceecccC
Q 022394 99 ALPKGERRVIIQ--DGET--ILLLWY-KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYP 173 (298)
Q Consensus 99 eL~~g~~~~v~~--~G~~--lvl~R~-~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P 173 (298)
+|.+|..+.+.+ +|.+ +++++. +|.+.+.-|.|-=-+.. |... +++.|+|-..|-+|.+.+=.-..
T Consensus 1 ~v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~~~--GY~q----~g~~lvC~~C~~~~~~~~ig~~~--- 71 (102)
T PF10080_consen 1 DVKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICGPK--GYYQ----EGDQLVCKNCGVRFNLPTIGGKS--- 71 (102)
T ss_pred CccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccCCC--ceEE----ECCEEEEecCCCEEehhhccccc---
Confidence 456666555554 4544 444454 89999999998765532 3332 67899999999999985311011
Q ss_pred CCccccccCCCCCCCcceeEEEECCeEEEEeCC
Q 022394 174 NNPVLRALTPALSTLYIFPVKTDEKNIYIRMEG 206 (298)
Q Consensus 174 ~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~ 206 (298)
+.+ -+.+. +-+++++.|.|....
T Consensus 72 --------GGC-NP~P~-~~~~~~~~I~I~~~~ 94 (102)
T PF10080_consen 72 --------GGC-NPIPL-PYTVDGGNIIIDQAD 94 (102)
T ss_pred --------CCC-CccCC-ceEecCCeEEEeHHH
Confidence 111 11111 667779999987643
No 84
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=64.41 E-value=14 Score=29.86 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=41.1
Q ss_pred ccEEceeCCCCCCCCeEEEEECC--cEEEEEEeCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeC
Q 022394 90 NWVPVVPLSALPKGERRVIIQDG--ETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G--~~lvl~R~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
..+.--++++... .+.+++.+ ....+.=.+|+++..+.-||++=|...|++.. .+..++|-=|+-.-.+
T Consensus 36 ~~~~~i~L~~~~~--~~~i~i~~~~g~~~i~i~~g~vrv~~s~CpdkiCv~~G~I~~---~G~~IVCLPn~lvI~I 106 (113)
T PF07009_consen 36 KEVKRIPLDKVNE--DKTIEIDGDGGYNTIEIKDGKVRVIESDCPDKICVKTGWISR---PGQSIVCLPNRLVIEI 106 (113)
T ss_dssp EEEEEEETTS-BS--EEEEEEETTTCEEEEEEETTEEEEEEESTSS-HHHHS-SB-S---TT-EEEETTTTEEEEE
T ss_pred EEEEEEECCCCCC--CEEEEEecCCcEEEEEEECCEEEEEECCCCCcchhhCCCcCC---CCCEEEEcCCEEEEEE
Confidence 4444445554333 44444432 23333335999999999999999987888842 5678999777655444
No 85
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=48.66 E-value=10 Score=30.74 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=22.3
Q ss_pred cCCCCCCcc--ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 128 ENRSPAEGA--YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 128 ~n~CpH~Ga--Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...||+-|+ +. + ...-|+||+.|..|.+.
T Consensus 9 KR~Cp~CG~kFYD---L-----nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD---L-----NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc---C-----CCCCccCCCCCCccCcc
Confidence 457999996 32 2 23579999999999985
No 86
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=44.81 E-value=24 Score=22.48 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCCCCcc---ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 130 RSPAEGA---YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 130 ~CpH~Ga---Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
.|||-+. +....+.+ .+..+.||.-|..|..
T Consensus 4 ~CP~C~~~~~v~~~~~~~---~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGA---NGGKVRCGKCGHVWYA 37 (38)
T ss_pred ECCCCCCEEEeCHHHcCC---CCCEEECCCCCCEEEe
Confidence 5999885 44444421 3458999999988863
No 87
>PRK00420 hypothetical protein; Validated
Probab=38.87 E-value=29 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=25.4
Q ss_pred EcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 127 IENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 127 ~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
+...||--|. |- .+ .++.+.||-||-.+..++++
T Consensus 22 l~~~CP~Cg~pLf--~l-----k~g~~~Cp~Cg~~~~v~~~e 56 (112)
T PRK00420 22 LSKHCPVCGLPLF--EL-----KDGEVVCPVHGKVYIVKSDE 56 (112)
T ss_pred ccCCCCCCCCcce--ec-----CCCceECCCCCCeeeeccHH
Confidence 5578999884 52 11 46799999999998886655
No 88
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=38.45 E-value=21 Score=29.97 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=21.6
Q ss_pred EcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 127 IENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 127 ~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
+...||--|. | +. .+|.+.||-||.++..
T Consensus 27 L~~hCp~Cg~PL----F~----KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 27 LAKHCPKCGTPL----FR----KDGEVFCPVCGYREVV 56 (131)
T ss_pred HHhhCcccCCcc----ee----eCCeEECCCCCceEEE
Confidence 3457999985 6 21 4689999999987765
No 89
>PF02959 Tax: HTLV Tax; InterPro: IPR004120 Human T-lymphotropic virus 1 is the etiological agent for adult T-cell leukemia (ATL), as well as for tropical spastic paraparesis (TSP) and HTLV-I associate myelopathy (HAM). A biological understanding of the involvement of HTLV-I and in ATL has focused significantly on the workings of the virally-encoded 40 kDa phospho-oncoprotein, Tat. Tat is a transcriptional activator. Its ability to modulate the expression and function of many cellular genes has been reasoned to be a major contributory mechanism explaining HTLV-I mediated transformation of cells. In activating cellular gene expression, Tat impinges upon several cellular signal-transduction pathways, including those for CREB/ATF and NF-kappaB [].; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 1HHK_C 1AO7_C 2AV7_F.
Probab=37.40 E-value=11 Score=33.22 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCCccccccccccccCCCCeEEcCCcCcEEeCCCCceec
Q 022394 129 NRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 129 n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~ 170 (298)
|.||-.|.+..-++.- .+-..+||-|.-+||..||++++
T Consensus 25 dwcp~~g~~~~~r~~r---~~~~~tc~~h~itw~p~dgr~~~ 63 (222)
T PF02959_consen 25 DWCPISGGLCSLRLHR---HALLATCPEHQITWDPIDGRVVG 63 (222)
T ss_dssp ------------------------------------------
T ss_pred ccccccCccchhhhhh---hhhhccCccceeeecccCCeecc
Confidence 4899988765545521 34579999999999977999986
No 90
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.14 E-value=47 Score=24.26 Aligned_cols=17 Identities=29% Similarity=0.804 Sum_probs=14.5
Q ss_pred CCCeEEcCCcCcEEeCC
Q 022394 148 QDGCIVCPTTESTFDLR 164 (298)
Q Consensus 148 ~~~~I~CP~HG~~Fdl~ 164 (298)
..+.++|||.|.+|.+.
T Consensus 45 ~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 45 DEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCcEecCccccEEEec
Confidence 45799999999999863
No 91
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=35.09 E-value=28 Score=25.32 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=12.6
Q ss_pred CCeEEcCCcCcEEeC
Q 022394 149 DGCIVCPTTESTFDL 163 (298)
Q Consensus 149 ~~~I~CP~HG~~Fdl 163 (298)
.-.|.||-||-....
T Consensus 30 PvtI~CP~HG~~~~s 44 (60)
T PF05265_consen 30 PVTIRCPKHGNFTCS 44 (60)
T ss_pred ceEEECCCCCcEEec
Confidence 348999999998875
No 92
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.25 E-value=1.9e+02 Score=24.19 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=40.1
Q ss_pred eEEEEECCcEEEEEE-eCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 105 RRVIIQDGETILLLW-YKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 105 ~~~v~~~G~~lvl~R-~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...++-.|...-... ++++++..++.||-+=+.-.|++. + .|++|+|==|...-...
T Consensus 61 t~~v~~~~g~~n~vev~g~~IRV~esNcpdqi~Vk~G~i~-k--~GetIVclPh~lvIev~ 118 (132)
T COG5341 61 TFDVKENGGFYNKVEVKGNRIRVVESNCPDQICVKTGWIS-K--PGETIVCLPHKLVIEVK 118 (132)
T ss_pred cEEEEcCCCceEEEEEcCCEEEEEecCCCcEEEEEeceec-C--CCCEEEEcCCeEEEEEE
Confidence 334444444444333 478899999999999887778883 3 68899998887766553
No 93
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=27.12 E-value=28 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=12.5
Q ss_pred cCCcCcEEeCCCCce
Q 022394 154 CPTTESTFDLRTGAV 168 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~ 168 (298)
...|||-||++||++
T Consensus 139 l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 139 LKVHGFVYDIKTGKV 153 (153)
T ss_dssp SEEEEEEEETTTTEE
T ss_pred CEEEEEEEECCCccC
Confidence 457999999999974
No 94
>PLN02755 complex I subunit
Probab=27.09 E-value=33 Score=25.72 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 255 LINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 255 ~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
+|.-|-|.+-|+..+++..+.|+|+..-+-
T Consensus 28 RWT~Rt~~i~~ifgv~VP~liy~giv~eF~ 57 (71)
T PLN02755 28 RWTRRNLAVVGIFGIAVPILVYKGIVREFH 57 (71)
T ss_pred ecccchhhhhhhhhhhhhHHhhhhhhhhhc
Confidence 577799999999999999999999987553
No 95
>PLN02154 carbonic anhydrase
Probab=27.04 E-value=43 Score=31.80 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=16.9
Q ss_pred cCCcCcEEeCCCCceecccCC
Q 022394 154 CPTTESTFDLRTGAVRDWYPN 174 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~~~P~ 174 (298)
.-.|||-||+.||++..|-+.
T Consensus 253 L~IhG~~Ydl~tG~l~~~~~~ 273 (290)
T PLN02154 253 VKIHGCYYNLSDCSLEKWRLS 273 (290)
T ss_pred cEEEEEEEECCCceEEEeccc
Confidence 348999999999999875443
No 96
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=24.48 E-value=42 Score=28.07 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=21.7
Q ss_pred cCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 128 ENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 128 ~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...||+-|. += .+ ...-++||+.|..|.+.
T Consensus 9 Kr~Cp~cg~kFY--DL-----nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFY--DL-----NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCcccc--cc-----CCCCccCCCcCCccCcc
Confidence 457999886 20 22 34689999999999874
No 97
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=2.1e+02 Score=25.54 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEEC--CcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcE
Q 022394 98 SALPKGERRVIIQD--GETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTEST 160 (298)
Q Consensus 98 ~eL~~g~~~~v~~~--G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~ 160 (298)
+++..|+.....+- +-++.|--...++-++.++|+--+. |- . .+..+.||-.|.+
T Consensus 117 d~f~~GDivrA~Vis~~~~~~Lst~~~dlGVI~A~CsrC~~~L~---~-----~~~~l~Cp~Cg~t 174 (188)
T COG1096 117 DAFRIGDIVRARVISTGDPIQLSTKGNDLGVIYARCSRCRAPLV---K-----KGNMLKCPNCGNT 174 (188)
T ss_pred cccccccEEEEEEEecCCCeEEEecCCcceEEEEEccCCCcceE---E-----cCcEEECCCCCCE
Confidence 66778887665542 3566666567777777778887765 52 2 4679999988765
No 98
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=23.36 E-value=35 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.9
Q ss_pred EcCCcCcEEeCCCCcee
Q 022394 153 VCPTTESTFDLRTGAVR 169 (298)
Q Consensus 153 ~CP~HG~~Fdl~tG~~~ 169 (298)
.+..||+-||++||++.
T Consensus 101 ~l~V~G~~ydi~tG~v~ 117 (119)
T cd00382 101 ELKVHGWVYDIETGKLE 117 (119)
T ss_pred CCEEEEEEEECCCCEEE
Confidence 45799999999999985
No 99
>PLN00416 carbonate dehydratase
Probab=22.43 E-value=39 Score=31.54 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=14.5
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
.-.|||.||++||++.-
T Consensus 228 l~I~G~~Ydl~TG~v~~ 244 (258)
T PLN00416 228 LAIRGGHYNFVKGTFDL 244 (258)
T ss_pred cEEEEEEEECCCceEEE
Confidence 34899999999999864
No 100
>PRK10437 carbonic anhydrase; Provisional
Probab=21.84 E-value=40 Score=30.64 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.8
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
+..|||-||+.||++..
T Consensus 174 l~IhG~~Ydl~tG~v~~ 190 (220)
T PRK10437 174 VTIHGWAYGIHDGLLRD 190 (220)
T ss_pred eEEEEEEEECCCcEEEE
Confidence 44799999999999975
No 101
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=21.49 E-value=43 Score=28.75 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.2
Q ss_pred cCCcCcEEeCCCCcee
Q 022394 154 CPTTESTFDLRTGAVR 169 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~ 169 (298)
+..|||.||++||++.
T Consensus 137 l~v~G~vyd~~tG~v~ 152 (154)
T cd03378 137 LKIVGAYYDLDTGKVE 152 (154)
T ss_pred cEEEEEEEECCCcEEE
Confidence 4799999999999974
No 102
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.64 E-value=4.5e+02 Score=25.41 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCcEEEEEEeCCeE--EEEcCCCCCCcc-cc-ccccccccCCCCeEEcC---CcCcEEeCCCCceec
Q 022394 111 DGETILLLWYKDEV--FAIENRSPAEGA-YS-EGLINAKLTQDGCIVCP---TTESTFDLRTGAVRD 170 (298)
Q Consensus 111 ~G~~lvl~R~~g~v--~A~~n~CpH~Ga-Ls-~G~v~g~~~~~~~I~CP---~HG~~Fdl~tG~~~~ 170 (298)
.++.|+||+..|+. +.... -|.|| +. .+.- ++..|.|- -|=..||.++|+++.
T Consensus 67 ~Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~~-----d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVLK--GHSGAVMELHGMR-----DGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred CcceEEEEeccccccceeeec--cccceeEeeeecc-----CCCEEEEecCCceEEEEecccceeee
Confidence 46899999963322 22222 78888 42 3333 34555554 244578999999875
Done!