Query 022394
Match_columns 298
No_of_seqs 299 out of 1710
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpz_A Naphthalene 1,2-dioxyge 100.0 3.5E-28 1.2E-32 192.6 14.1 101 89-205 2-103 (103)
2 3dqy_A Toluene 1,2-dioxygenase 100.0 1.7E-28 5.7E-33 195.6 10.6 102 90-207 1-103 (106)
3 3gce_A Ferredoxin component of 100.0 4.1E-28 1.4E-32 198.3 13.1 106 89-210 9-117 (121)
4 1fqt_A Rieske-type ferredoxin 100.0 6E-28 2.1E-32 194.3 13.1 104 89-208 4-109 (112)
5 2i7f_A Ferredoxin component of 100.0 3.2E-28 1.1E-32 194.5 10.3 102 90-207 3-106 (108)
6 2de6_D Ferredoxin component of 99.9 9.7E-28 3.3E-32 194.3 11.9 105 89-209 3-109 (115)
7 1vm9_A Toluene-4-monooxygenase 99.9 2.3E-27 8E-32 190.4 12.5 103 90-209 1-106 (111)
8 2jo6_A Nitrite reductase [NAD( 99.9 1.4E-26 4.7E-31 186.4 12.9 103 89-205 5-112 (113)
9 3c0d_A Putative nitrite reduct 99.9 6E-27 2.1E-31 190.7 10.7 107 88-208 3-113 (119)
10 4aiv_A Probable nitrite reduct 99.9 7.5E-27 2.6E-31 190.7 9.9 107 88-206 7-117 (119)
11 3d89_A Rieske domain-containin 99.9 6.2E-27 2.1E-31 199.3 8.4 122 86-209 12-138 (157)
12 2jza_A Nitrite reductase [NAD( 99.9 5E-26 1.7E-30 188.2 12.7 107 89-209 2-113 (130)
13 2de6_A Terminal oxygenase comp 99.9 3E-24 1E-28 207.0 14.6 118 86-209 24-142 (392)
14 3gcf_A Terminal oxygenase comp 99.9 3.7E-24 1.3E-28 206.1 14.9 118 86-209 30-148 (394)
15 3gkq_A Terminal oxygenase comp 99.9 3.6E-24 1.2E-28 205.8 14.3 118 86-209 27-145 (389)
16 2zyl_A Possible oxidoreductase 99.9 9.1E-24 3.1E-28 203.5 14.8 114 85-209 20-135 (386)
17 1z01_A 2-OXO-1,2-dihydroquinol 99.9 1.4E-23 4.7E-28 205.7 15.0 117 86-208 39-156 (446)
18 3gke_A DDMC; rieske cluster, n 99.9 9E-24 3.1E-28 201.0 10.6 112 86-208 4-117 (349)
19 3n0q_A Putative aromatic-ring 99.9 7.4E-23 2.5E-27 198.7 12.9 128 69-209 24-155 (409)
20 3vca_A Ring-hydroxylating diox 99.9 1.1E-22 3.7E-27 197.7 12.6 128 69-209 26-157 (412)
21 2gbw_A Biphenyl 2,3-dioxygenas 99.9 1.4E-22 4.8E-27 198.8 12.5 133 67-209 18-155 (454)
22 1rie_A Rieske iron-sulfur prot 99.9 2.5E-22 8.6E-27 165.9 11.3 95 90-202 5-128 (129)
23 2bmo_A Oxygenase-alpha NBDO; n 99.9 8.7E-23 3E-27 199.8 9.9 132 68-209 18-155 (447)
24 3gzx_A Biphenyl dioxygenase su 99.9 1.6E-22 5.5E-27 198.8 11.1 134 66-209 37-181 (457)
25 1g8k_B Arsenite oxidase; molyb 99.9 4.7E-22 1.6E-26 165.1 10.9 99 88-203 5-119 (133)
26 1uli_A Biphenyl dioxygenase la 99.9 4.1E-22 1.4E-26 196.0 10.6 131 69-209 38-172 (460)
27 2b1x_A Naphthalene dioxygenase 99.8 2.4E-21 8.3E-26 190.8 11.3 132 68-209 27-164 (470)
28 1rfs_A Rieske protein; iron-su 99.8 2.5E-21 8.5E-26 162.0 9.0 103 86-206 17-125 (139)
29 4aay_B AROB; oxidoreductase, r 99.8 3E-21 1E-25 167.5 9.5 99 88-203 48-161 (175)
30 3cx5_E Cytochrome B-C1 complex 99.8 5.1E-19 1.7E-23 154.6 11.9 97 88-202 60-184 (185)
31 3azc_A Cytochrome B6-F complex 99.7 1E-20 3.4E-25 157.3 0.0 102 88-207 13-121 (133)
32 1pp9_E Ubiquinol-cytochrome C 99.8 4.3E-19 1.5E-23 156.4 10.4 93 93-202 74-195 (196)
33 2qjy_C Ubiquinol-cytochrome C 99.8 1.2E-18 4.2E-23 152.5 13.0 97 89-202 47-186 (187)
34 2nwf_A Ubiquinol-cytochrome C 99.8 8.5E-19 2.9E-23 147.0 11.0 90 96-202 7-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.8 6E-19 2E-23 151.6 9.4 98 96-209 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 1.9E-18 6.6E-23 150.1 -0.3 91 97-205 70-165 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 1.1E-16 3.9E-21 141.7 3.2 90 106-206 56-168 (204)
38 2bhw_A Chlorophyll A-B binding 97.6 9.2E-06 3.1E-10 72.9 0.7 39 246-284 172-210 (232)
39 3pl9_A Chlorophyll A-B binding 97.6 1.3E-05 4.3E-10 72.3 1.2 38 246-283 189-226 (243)
40 2wsc_2 LHCA2, type II chloroph 97.6 7E-06 2.4E-10 75.1 -0.5 40 245-284 212-251 (269)
41 2wsc_3 LHCA3, type II chloroph 97.6 1.2E-05 4.2E-10 73.7 1.0 39 246-284 220-258 (276)
42 2wsc_1 AT3G54890, LHCA1; photo 97.4 3.5E-05 1.2E-09 69.5 1.1 39 246-284 183-222 (241)
43 2wsc_4 Chlorophyll A-B binding 97.0 7.7E-05 2.6E-09 67.6 -1.4 36 245-280 86-121 (251)
44 2wsc_4 Chlorophyll A-B binding 96.4 0.00064 2.2E-08 61.6 0.5 35 249-284 199-233 (251)
45 2wsc_3 LHCA3, type II chloroph 96.2 0.00013 4.5E-09 66.9 -5.1 33 248-280 97-129 (276)
46 2wsc_2 LHCA2, type II chloroph 95.8 0.0018 6.2E-08 59.1 0.7 36 245-280 97-132 (269)
47 3pl9_A Chlorophyll A-B binding 95.8 0.0026 9E-08 57.1 1.4 33 245-277 87-119 (243)
48 2bhw_A Chlorophyll A-B binding 94.2 0.012 4.1E-07 52.6 1.1 31 246-276 57-87 (232)
49 2wsc_1 AT3G54890, LHCA1; photo 84.9 0.032 1.1E-06 50.1 -4.8 30 246-275 79-108 (241)
50 3ld7_A LIN0431 protein; DUF131 48.9 18 0.00063 27.7 4.0 41 120-163 48-88 (101)
51 4esn_A Hypothetical protein; p 48.7 29 0.001 26.7 5.2 55 106-164 38-92 (104)
52 1m1h_A Transcription antitermi 45.0 35 0.0012 30.2 5.9 40 120-163 89-128 (248)
53 2kpp_A LIN0431 protein; soluti 42.9 36 0.0012 26.6 5.0 44 117-163 45-88 (114)
54 3las_A Putative carbonic anhyd 31.4 14 0.00047 30.9 0.8 16 155-170 149-164 (166)
55 1ylk_A Hypothetical protein RV 28.6 17 0.00059 30.4 1.0 17 154-170 153-169 (172)
56 3qy1_A Carbonic anhydrase; str 25.8 19 0.00066 31.4 0.8 17 154-170 177-193 (223)
57 1g5c_A Beta-carbonic anhydrase 25.3 19 0.00066 29.8 0.7 18 153-170 148-165 (170)
58 1ekj_A Beta-carbonic anhydrase 24.6 21 0.00072 30.9 0.8 16 154-169 192-207 (221)
59 3ucj_A Carbonic anhydrase; alp 23.4 24 0.00082 30.9 1.0 16 155-170 182-197 (227)
60 3e3i_A Carbonic anhydrase 2, b 23.2 23 0.00079 31.1 0.8 17 154-170 174-190 (229)
61 1ym3_A Carbonic anhydrase (car 22.8 21 0.00071 30.9 0.4 17 154-170 188-204 (215)
62 2w3q_A Carbonic anhydrase 2; l 22.7 24 0.00082 31.2 0.8 18 153-170 208-225 (243)
63 2jrr_A Uncharacterized protein 22.6 50 0.0017 23.5 2.3 20 148-167 37-56 (67)
64 3eyx_A Carbonic anhydrase; ros 21.9 26 0.00087 30.5 0.8 17 154-170 190-206 (216)
No 1
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.96 E-value=3.5e-28 Score=192.60 Aligned_cols=101 Identities=25% Similarity=0.486 Sum_probs=94.5
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
..|+.|+.++||++|+.+.++++|++|+|+|.+|+++|++|.|||+|+ |++|.+ .++.|+||||||+||++||+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fd~~~G~ 76 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYL-----EGREIECPLHQGRFDVCTGK 76 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTTCEEETTTCC
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEEECCEEEEECCcCCCCCCCCCCCeE-----eCCEEECCCCCCEEeCCCCC
Confidence 479999999999999999999999999999999999999999999997 999987 57899999999999999999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRME 205 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~ 205 (298)
|+. .|+..+|++|+|++++|.|||+++
T Consensus 77 ~~~-----------~P~~~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 77 ALC-----------APVTQNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp EEE-----------TTCCSCCCEECEEEETTEEEEECC
T ss_pred EeC-----------CCCCCCCCEEeEEEECCEEEEEcC
Confidence 997 677779999999999999999874
No 2
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.95 E-value=1.7e-28 Score=195.57 Aligned_cols=102 Identities=23% Similarity=0.480 Sum_probs=95.8
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCce
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~ 168 (298)
+|+.|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |++|.+ .++.|+||||||+||++||+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~~G~~ 75 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYL-----DGDIVECTLHFGKFCVRTGKV 75 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEECCEEEEEeCcCCCCCCCCcCcEE-----eCCEEECCCCCCEEeCCCCCE
Confidence 59999999999999999999999999999999999999999999997 999988 578999999999999989999
Q ss_pred ecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 169 RDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 169 ~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
+. +|+..+|++|+|++++|.|||++++.
T Consensus 76 ~~-----------~P~~~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 76 KA-----------LPACKPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp EE-----------TTCCSCCCEECEEEETTEEEECGGGC
T ss_pred eC-----------CCCCCCccEEEEEEECCEEEEEcccc
Confidence 97 67778999999999999999998764
No 3
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.95 E-value=4.1e-28 Score=198.26 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=95.3
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-cccc--ccccccCCCCeEEcCCcCcEEeCCC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEG--LINAKLTQDGCIVCPTTESTFDLRT 165 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G--~v~g~~~~~~~I~CP~HG~~Fdl~t 165 (298)
..|+.|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |++| .+ .++.|+||||||+||++|
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~g~~~A~~n~CpH~g~~L~~G~~~~-----~~~~i~CP~Hg~~Fdl~t 83 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSVYAISNLCSHAEAYLDMGVFHA-----ESLEIECPLHVGRFDVRT 83 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEETTEEEEEESBCSSSSCBGGGSEEET-----TTTEEECTTTCCEEETTT
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEECCEEEEEeCcCCCCCCCCCCCceee-----cCCEEEcCCCCCEEcCCC
Confidence 469999999999999999999999999999999999999999999997 9998 66 678999999999999989
Q ss_pred CceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCCC
Q 022394 166 GAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGASS 210 (298)
Q Consensus 166 G~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~~ 210 (298)
|+|+. +|+..+|++|+|++++|.|||+++..+.+
T Consensus 84 G~~~~-----------~P~~~~L~~~~v~v~~g~V~v~~~~~~~~ 117 (121)
T 3gce_A 84 GAPTA-----------LPCVLPVRAYDVVVDGTEILVAPKEADHH 117 (121)
T ss_dssp CCEEE-----------TTCCSCCCBCCEEEETTEEEECCC-----
T ss_pred ccEeC-----------CCCcCCcceEEEEEECCEEEEEECccccc
Confidence 99997 67778999999999999999999887654
No 4
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.95 E-value=6e-28 Score=194.25 Aligned_cols=104 Identities=23% Similarity=0.501 Sum_probs=96.0
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-cccc-ccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEG-LINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G-~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
+.|+.|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |++| .+ +++.|+||||||+||++||
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~n~CpH~g~~L~~g~~~-----~~~~i~CP~Hg~~Fd~~tG 78 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYL-----EGDVVECSLHMGKFCVRTG 78 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEETTEEEEEESBCTTSSCBSSTTCCE-----ETTEEECTTTCCEEETTTC
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEECCEEEEEECCCCCCCcCCCCCCEE-----cCCEEECCCCCCEEeCCCC
Confidence 469999999999999999999999999999999999999999999997 9888 76 5689999999999999899
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
+|+. .|+..+|++|+|++++|.|||++++..
T Consensus 79 ~~~~-----------~P~~~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 79 KVKS-----------PPPCEALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp CEEE-----------SSCCSCCCBCCEEEETTEEEECTTCCB
T ss_pred cEeC-----------CCCCCCccEEEEEEECCEEEEEecccc
Confidence 9997 677788999999999999999987653
No 5
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.95 E-value=3.2e-28 Score=194.55 Aligned_cols=102 Identities=22% Similarity=0.382 Sum_probs=94.1
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcE-EEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCc
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGET-ILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~-lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~ 167 (298)
.|+.|+.++||++|+.+.++++|++ |+|+|.+|+++|++|.|||+|+ |++|.+ .++.|+||||||+||++||+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~tG~ 77 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQ-----DGTIIECPFHGGSFDIATGA 77 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECSSTTCEEETTTCC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEECCEEEEEeCcCCCCCCCCCCCEE-----eCCEEEcCCCCCEEeCCCcC
Confidence 5999999999999999999999999 9999999999999999999997 999987 56899999999999998999
Q ss_pred eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCC
Q 022394 168 VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGG 207 (298)
Q Consensus 168 ~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~ 207 (298)
|+. .|+..+|++|+|++++|.|||+++++
T Consensus 78 ~~~-----------~P~~~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 78 AKA-----------FPCQIPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp BCS-----------TTCCSCCCEECEEEETTEEEEECC--
T ss_pred EeC-----------CCCCCCccEEeEEEECCEEEEeCCCC
Confidence 987 67778999999999999999999764
No 6
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.95 E-value=9.7e-28 Score=194.27 Aligned_cols=105 Identities=25% Similarity=0.424 Sum_probs=95.9
Q ss_pred CccEEceeCCCCCCCCeEEEEECCc-EEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGE-TILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~-~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
+.|+.|+.++||++|+.+.++++|+ +|+|+|.+|+++|++|+|||+|+ |++|.+ .++.|+||||||+||++||
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~~g~~~A~~n~CpH~g~~L~~g~~-----~~~~i~CP~Hg~~Fdl~tG 77 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTL-----DGDVIECPFHGGAFNVCTG 77 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEETTEEEEEESBCTTSSCBGGGSEE-----ETTEEECTTTCCEEETTTC
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEECCEEEEEeCCCCCCCCCCcCCEE-----eCCEEECCCCCCEEcCCCc
Confidence 4699999999999999999999999 99999999999999999999997 999987 5689999999999999899
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+|+. .|+..+|++|+|++++|.|||++++..+
T Consensus 78 ~~~~-----------~P~~~~L~~~~v~~~~g~V~v~~~~~~~ 109 (115)
T 2de6_D 78 MPAS-----------SPCTVPLGVFEVEVKEGEVYVAGEKKLE 109 (115)
T ss_dssp CEEE-----------TTCCSCCCEEEEEESSSEEEEEEEEC--
T ss_pred CEeC-----------CCCcCCCCEEEEEEECCEEEEecCCccc
Confidence 9997 6777899999999999999999987644
No 7
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.95 E-value=2.3e-27 Score=190.38 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=94.6
Q ss_pred ccEEceeCCCCCCCCeEEEEE-CCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCC
Q 022394 90 NWVPVVPLSALPKGERRVIIQ-DGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~-~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG 166 (298)
.|+.|+.++||++|+.+.+++ +|++|+|+|. +|+++|++|+|||+|+ |++|.+ .++.|+||||||+||++||
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fd~~tG 75 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSY-----EGGVITCRAHLWTFNDGTG 75 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTCCEEETTTC
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceE-----cCCEEEcCCCCCEEeCCCc
Confidence 599999999999999999999 9999999998 9999999999999997 999887 5689999999999999889
Q ss_pred ceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 167 AVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 167 ~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+|+. |+..+|++|+|++++|.|||++++..+
T Consensus 76 ~~~~------------p~~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 76 HGIN------------PDDAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp BBSS------------SSSCBCCEECEEEETTEEEECCTTCCC
T ss_pred cCCC------------CCcCCcCEEEEEEECCEEEEeccCcCC
Confidence 9984 556789999999999999999987643
No 8
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.94 E-value=1.4e-26 Score=186.42 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=91.3
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CC-eEEEEcCCCCCCcc--ccccccccccCCCC-eEEcCCcCcEEeC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-KD-EVFAIENRSPAEGA--YSEGLINAKLTQDG-CIVCPTTESTFDL 163 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g-~v~A~~n~CpH~Ga--Ls~G~v~g~~~~~~-~I~CP~HG~~Fdl 163 (298)
+.|+.|+.++||++|+.+.++++|++|+|+|. +| +++|++|+|||+|+ |++|.+.+. .+. .|+||||||+||+
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fd~ 82 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEH--QGELWVASPLKKQRFRL 82 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEE--TTEEEEEETTTTEEEET
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEecc--CCCcEEECCCCCCEEeC
Confidence 35999999999999999999999999999998 99 69999999999985 899988321 133 8999999999999
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRME 205 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~ 205 (298)
+||+|+. .|+ .+|++|+|++++|.|||+++
T Consensus 83 ~tG~~~~-----------~P~-~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 83 SDGLCME-----------DEQ-FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTTEETT-----------TTT-TCCCEEEEEEETTEEEEECC
T ss_pred CCccCCC-----------CCc-ccccEEeEEEECCEEEEEcC
Confidence 9999987 454 78999999999999999985
No 9
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.94 E-value=6e-27 Score=190.69 Aligned_cols=107 Identities=20% Similarity=0.361 Sum_probs=93.8
Q ss_pred CCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc--ccccccccccCCCC-eEEcCCcCcEEeC
Q 022394 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA--YSEGLINAKLTQDG-CIVCPTTESTFDL 163 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga--Ls~G~v~g~~~~~~-~I~CP~HG~~Fdl 163 (298)
.+.|+.|+.++||++|+.+.++++|++|+|+|. +|+++|++|+|||+|+ |++|.+.+. .+. .|+||||||+||+
T Consensus 3 ~~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fdl 80 (119)
T 3c0d_A 3 ALTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDI--NGEMCVASPLYKQHFSL 80 (119)
T ss_dssp -CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEES--SSSEEEECTTTCCEEET
T ss_pred CCccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCC--CCCeEEECCCCCCEEEC
Confidence 457999999999999999999999999999998 9999999999999975 999988421 123 8999999999999
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
+||+|+. .|+ .+|++|+|++++|.|||++++.+
T Consensus 81 ~tG~~~~-----------~P~-~~l~~~~v~v~~g~V~v~~~~~~ 113 (119)
T 3c0d_A 81 KSGQCLE-----------DEA-HCLKTWRVTVDDNQVCYLAKELE 113 (119)
T ss_dssp TTCBBSS-----------CTT-CBCCEECEEESSSEEEEECCCC-
T ss_pred CCCcCCC-----------CCC-ceeeEEEEEEECCEEEEEeCCcc
Confidence 9999987 454 68999999999999999998764
No 10
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.94 E-value=7.5e-27 Score=190.66 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCccEEceeCCCCCCCCeEEEEE-CCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 88 GENWVPVVPLSALPKGERRVIIQ-DGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~-~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
..+|++||.++||++|+.+.+.+ +|++|+|||. +|++||++|+|||+|+ |..|.+.+....+.+|+||||||+||++
T Consensus 7 ~~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred ccceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 34799999999999999888887 5899999997 8999999999999996 6555443321123469999999999999
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEE-CCeEEEEeCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTD-EKNIYIRMEG 206 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~-~g~V~V~l~~ 206 (298)
||+|+. .| ..+|++|||+++ +|.|||...+
T Consensus 87 tG~~~~-----------~p-~~~l~~ypv~ve~dG~V~V~~~a 117 (119)
T 4aiv_A 87 DGSCLD-----------DP-RVSVPVYPARVTPEGRIQVARVA 117 (119)
T ss_dssp TCBBSS-----------CT-TCBCCEECEEECTTSEEEEEEEE
T ss_pred CCcCcC-----------CC-CCccceEEEEEEeCCEEEEecCC
Confidence 999986 34 357999999987 7999998654
No 11
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.93 E-value=6.2e-27 Score=199.29 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=96.8
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCC-CeEEcCCcCcEEeC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQD-GCIVCPTTESTFDL 163 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~-~~I~CP~HG~~Fdl 163 (298)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |+.|.+.+. .+ ++|+||||||+||+
T Consensus 12 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~G~v~A~~n~CpH~g~~L~~G~~~~~--~g~~~i~CP~Hgw~Fdl 89 (157)
T 3d89_A 12 KKKYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDF--NGQSCIVCPWHKYKITL 89 (157)
T ss_dssp --CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEETTEEEEEESBCTTTCCBGGGSEEEEE--TTEEEEECTTTCCEEET
T ss_pred CCCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEECCEEEEEeCCCCCCCCCCcCCEecCc--CCCCEEECCCCCCEEec
Confidence 456789999999999989999999999999999999999999999999997 999987321 12 68999999999999
Q ss_pred CCCceecc-c-CCC-ccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 164 RTGAVRDW-Y-PNN-PVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 164 ~tG~~~~~-~-P~~-p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+||+|+.+ + |.. |....+.+...+|++|+|++++|.|||++++..+
T Consensus 90 ~tG~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~ 138 (157)
T 3d89_A 90 ATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPF 138 (157)
T ss_dssp TTCEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCSS
T ss_pred CCcCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCCc
Confidence 99999852 2 432 1110000123579999999999999999987643
No 12
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=5e-26 Score=188.15 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=93.9
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CC-eEEEEcCCCCCCcc--ccccccccccCCC-CeEEcCCcCcEEeC
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-KD-EVFAIENRSPAEGA--YSEGLINAKLTQD-GCIVCPTTESTFDL 163 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g-~v~A~~n~CpH~Ga--Ls~G~v~g~~~~~-~~I~CP~HG~~Fdl 163 (298)
++|+.|+.++||++|+.+.++++|++|+|+|. +| +++|++|+|||+|+ |++|.+.+. .+ ..|+||||||+||+
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fdl 79 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEH--QDDLWVASPLKKQHFRL 79 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEES--SSSEEEECSSSCCEEET
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCccc--CCCeEEECCCCCCEEeC
Confidence 36999999999999999999999999999998 78 89999999999984 899987321 13 38999999999999
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+||+|+. .|+ .+|++|+|++++|.|||++++...
T Consensus 80 ~tG~~~~-----------~P~-~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 80 YDGFCLE-----------DGA-YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp TTCCBSS-----------CCS-SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCcCCCC-----------CCc-CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999987 454 789999999999999999987643
No 13
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.91 E-value=3e-24 Score=206.97 Aligned_cols=118 Identities=20% Similarity=0.363 Sum_probs=102.1
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|+.|+|||+|+ |+.|.+.+ .++.|+||||||+||++
T Consensus 24 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~G~v~a~~n~CpHrga~L~~g~~~~---~~~~i~CpyHgw~f~~~ 100 (392)
T 2de6_A 24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECK---TKSTITCWYHAWTYRWE 100 (392)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGGCCCC---STTEEECTTTCEEEETT
T ss_pred hhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCEEEEEeCcCCCCCCCCcCCcccC---CCCEEEeCCCCCEEcCC
Confidence 457799999999999999999999999999999999999999999999997 99988632 46899999999999987
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
||+|+. +|..|.. ..+...+|++|+|++++|+|||++++..+
T Consensus 101 ~G~~~~-~p~~p~~--~~~~~~~l~~~~v~~~~G~v~v~~~~~~~ 142 (392)
T 2de6_A 101 DGVLCD-ILTNPTS--AQIGRQKLKTYPVQEAKGCVFIYLGDGDP 142 (392)
T ss_dssp TCBEEE-ETTCTTC--TTTTSCBCCBCCEEEETTEEEEEESSSSC
T ss_pred CCcccc-ccCCccc--cccccCCCceEeEEEECCEEEEEeCCCCC
Confidence 899997 6654432 13456789999999999999999976543
No 14
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.91 E-value=3.7e-24 Score=206.15 Aligned_cols=118 Identities=23% Similarity=0.348 Sum_probs=102.2
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |+.|.+.+ .+++|+||||||+||++
T Consensus 30 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~---~~~~I~CPyHGW~Fdl~ 106 (394)
T 3gcf_A 30 GFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRAKGEVKAIADGCAHRGVPFSKEPLCF---KAGTVSCWYHGWTYDLD 106 (394)
T ss_dssp CEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGSCBCS---STTEEECTTTCEEEETT
T ss_pred hhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCeEEEeeCcCCCCCCCCcCCcccC---cCCEEECCCCCcEEECC
Confidence 456799999999999999999999999999999999999999999999997 99887421 56899999999999998
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
||+|+. +|..|... .+...+|++|+|++++|+|||++++.+.
T Consensus 107 dG~cv~-iP~~p~~~--~~~~~~L~~ypV~e~~G~VfV~lgd~~~ 148 (394)
T 3gcf_A 107 DGRLVD-VLTSPGSP--VIGKIGIKVYPVQVAQGVVFVFIGDEEP 148 (394)
T ss_dssp TCBEEE-ETTSTTCT--TTTSCBCCEECEEEETTEEEEEESSSCC
T ss_pred CCceec-cCCCcccc--cccccCceEEEEEEECCcEEEecCCCCC
Confidence 899997 66654321 3456789999999999999999976543
No 15
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.91 E-value=3.6e-24 Score=205.79 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=102.1
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |+.|.+.+ .+++|+||||||+||++
T Consensus 27 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~---~~~~I~CPyHGW~Fdl~ 103 (389)
T 3gkq_A 27 GFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNRVDGVVHAIADRCLHRGVTLSDKVECY---SKATISCWYHGWTYRWD 103 (389)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGGCCCS---BTTEEECTTTCEEEETT
T ss_pred hhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCeEEEeCCcCCCCCCCccCCcccC---cCCEEECCCCCCEEECC
Confidence 457899999999999999999999999999999999999999999999997 99887421 46899999999999998
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
||+|+. +|..|.. ..+...+|++|+|++++|+|||++++.++
T Consensus 104 dG~cv~-iP~~P~~--~~~~~~~L~~ypV~e~~G~VfV~lgd~~~ 145 (389)
T 3gkq_A 104 NGKLVD-ILTNPTS--VQIGRHALKTYPVREEKGLVFLFVGDQEP 145 (389)
T ss_dssp TCBEEE-ETTCTTC--TTTTSCBCCBCCEEEETTEEEEEESSSCC
T ss_pred CCCeec-ccCCccc--ccccccCCcEEEEEEECCeEEEecCCCCC
Confidence 899997 6665532 13456789999999999999999976543
No 16
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.90 E-value=9.1e-24 Score=203.52 Aligned_cols=114 Identities=11% Similarity=0.214 Sum_probs=100.1
Q ss_pred CCCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEe
Q 022394 85 GGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (298)
Q Consensus 85 ~~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fd 162 (298)
....+.|+.||.++||++|+.+.++++|++|+|+|+ +|+++|++|+|||+|+ |+.|.+ .+++|+||||||+||
T Consensus 20 ~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~-----~~~~i~CpyHgw~f~ 94 (386)
T 2zyl_A 20 TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV-----KGDEVACPFHDWRWG 94 (386)
T ss_dssp SSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEE-----ETTEEECTTTCCEEE
T ss_pred hhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcc-----cCCEEEeCCCCCEEC
Confidence 345678999999999999999999999999999997 9999999999999997 999987 568999999999999
Q ss_pred CCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 163 LRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 163 l~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+ ||+|+. +|.... .|...+|++|+|++++|+|||+++++..
T Consensus 95 ~-~G~~~~-~P~~~~----~~~~~~l~~~~v~~~~G~v~v~~~~~~~ 135 (386)
T 2zyl_A 95 G-DGRCKL-VPYARR----TPRMARTRSWTTDVRSGLLFVWHDHEGN 135 (386)
T ss_dssp T-TSBEEE-CTTCSS----CCTTCBCCEECEEEETTEEEEEECTTCC
T ss_pred C-CCCccc-cCcccc----cCcccCcceEeEEEECCEEEEEECCccC
Confidence 9 899997 554321 2456789999999999999999987643
No 17
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.90 E-value=1.4e-23 Score=205.70 Aligned_cols=117 Identities=23% Similarity=0.281 Sum_probs=101.5
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEeCCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+|+ |+.|.+.+ .++.|+||||||+||++
T Consensus 39 if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r~~G~v~a~~n~CpHrga~L~~g~~~~---~~~~i~CpyHgw~fd~~ 115 (446)
T 1z01_A 39 GFINHWYPALFTHELEEDQVQGIQICGVPIVLRRVNGKVFALKDQCLHRGVRLSEKPTCF---TKSTISCWYHGFTFDLE 115 (446)
T ss_dssp CBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGSCCCS---STTEEECTTTCEEEETT
T ss_pred hhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCEEEEEeCcCCCCcCCCCCCccCC---CCCEEEeCCCCeEEeCC
Confidence 557899999999999999999999999999999999999999999999997 99987422 46899999999999987
Q ss_pred CCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 165 TGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 165 tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
||+|+. +|..|.. ..+...+|++|+|++++|+|||++++.+
T Consensus 116 ~G~~~~-~p~~p~~--~~~~~~~l~~~~v~~~~G~V~v~~~~~~ 156 (446)
T 1z01_A 116 TGKLVT-IVANPED--KLIGTTGVTTYPVHEVNGMIFVFVREDD 156 (446)
T ss_dssp TCBEEE-ETTCTTC--TTTTSCBCCEECEEEETTEEEEEECCTT
T ss_pred CCCccc-cCCCccc--cCcccCCCcEEEEEEECCEEEEEeCCcc
Confidence 899997 6654421 1345678999999999999999998753
No 18
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.90 E-value=9e-24 Score=201.00 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=98.2
Q ss_pred CCCCccEEceeCCCCCCCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeC
Q 022394 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 86 ~~~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
...+.|+.||.++|| +|+.+.++++|++|+|+|+ +|+++|++|+|||+|+ |+.|.+ .++.|+||||||+||+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~-----~~~~i~CpyHgw~fd~ 77 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL-----VNGHLQCPYHGLEFDG 77 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEE-----ETTEEECTTTCCEECT
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCc-----cceEEEECCCCCEEcC
Confidence 346799999999999 8999999999999999997 9999999999999997 999988 5789999999999999
Q ss_pred CCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCC
Q 022394 164 RTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGA 208 (298)
Q Consensus 164 ~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~ 208 (298)
||+|+. +|... ...|...+|++|+|++++|.|||+++++.
T Consensus 78 -~G~~~~-~P~~~---~~~~~~~~l~~~~v~~~~G~V~v~~~~~~ 117 (349)
T 3gke_A 78 -GGQCVH-NPHGN---GARPASLNVRSFPVVERDALIWIWPGDPA 117 (349)
T ss_dssp -TCCEEE-CCSTT---CCCCGGGCCCBCCEEEETTEEEECCSCGG
T ss_pred -CCCccc-cCccc---cccccccccceeeEEEECCEEEEeeCCCC
Confidence 899997 55311 11245678999999999999999998764
No 19
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.88 E-value=7.4e-23 Score=198.73 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=107.5
Q ss_pred ccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccc-ccccc
Q 022394 69 AAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSE-GLINA 144 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~-G~v~g 144 (298)
+++....+.++. ....+.|+.||.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|+|||||+ |+. |.+
T Consensus 24 Y~d~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~-- 97 (409)
T 3n0q_A 24 YTDAEVFQTDLQ----EIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKG-- 97 (409)
T ss_dssp HHCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEE--
T ss_pred cCCHHHHHHHHH----HHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCcc--
Confidence 566666666655 35678999999999998 6999999999999999997 9999999999999997 875 766
Q ss_pred ccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 145 ~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
.++.|+||||||+||+ ||+|+. +|..+ ..+.+...+|++|+|++.+|+|||+++++.+
T Consensus 98 ---~~~~i~CpyHgw~fd~-dG~~~~-~P~~~--~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~ 155 (409)
T 3n0q_A 98 ---NNPKLVCPYHQWTYEL-DGRLLW-ARDMG--PDFEPSRHGLKTVHCRELAGLIYICLADEAP 155 (409)
T ss_dssp ---ECSSEECTTTCCEECT-TSCEEE-CTTCC--TTCCGGGCSCCEEEEEEETTEEEEECSSSCC
T ss_pred ---CCCEEEECCCCCEEeC-CCCccc-CCcCC--cccCcccCCCceEEEEEECCEEEEEeCCCCC
Confidence 5689999999999999 899997 55432 1123556889999999999999999988754
No 20
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.88 E-value=1.1e-22 Score=197.72 Aligned_cols=128 Identities=17% Similarity=0.186 Sum_probs=106.8
Q ss_pred ccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-cc-cccccc
Q 022394 69 AAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YS-EGLINA 144 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls-~G~v~g 144 (298)
+++....+.++. ....+.|+.||.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|+|||+|+ |+ +|.+
T Consensus 26 Y~d~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~-- 99 (412)
T 3vca_A 26 YTSPEVYALDLQ----HIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQG-- 99 (412)
T ss_dssp HHCHHHHHHHHH----HTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEE--
T ss_pred cCCHHHHHHHHH----HHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeeccccc--
Confidence 555566666554 35678999999999999 6999999999999999997 8999999999999997 87 6776
Q ss_pred ccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 145 ~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
.++.|+||||||+||+ ||+|+. .|..+. ...+.+.+|+.|+|++++|+|||++++..+
T Consensus 100 ---~~~~i~CPyHgw~fdl-dG~~~~-~P~~~~--~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p 157 (412)
T 3vca_A 100 ---QVAKLVCPYHQWTYEL-DGKLIW-ANDMGP--DFDASKYGLKPVNLRNLDGLIYICLSDTPP 157 (412)
T ss_dssp ---ECSSEECTTTCCEECT-TSCEEE-CTTCCT--TCCGGGCSCCEEEEEEETTEEEEECSSSCC
T ss_pred ---CCCEEEcCCCCCEEcC-CCcccc-CCcccc--ccCcccCCCcEEEEEEECCEEEEEecCCCC
Confidence 5689999999999999 899997 554221 123456789999999999999999988754
No 21
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.88 E-value=1.4e-22 Score=198.82 Aligned_cols=133 Identities=16% Similarity=0.096 Sum_probs=108.0
Q ss_pred ecccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccc
Q 022394 67 CKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLIN 143 (298)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~ 143 (298)
.-+++....+.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|||+|+ |+.|..
T Consensus 18 ~~y~~~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~- 92 (454)
T 2gbw_A 18 QVFWDEDVYALEIE----RIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADS- 92 (454)
T ss_dssp GGGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSE-
T ss_pred HHcCCHHHHHHHHH----HHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCccccc-
Confidence 34666666666554 24567999999999999 6899999999999999997 9999999999999997 988775
Q ss_pred cccCCCCeEEcCCcCcEEeCCCCceecccCCCcccc--ccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 144 AKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLR--ALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 144 g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~--~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
| .+++|+||||||+||+ ||+|+. +|..+... .+.+...+|++|+|++.+|+|||+++++.+
T Consensus 93 g---~~~~i~CpyHgw~f~~-~G~~~~-~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p 155 (454)
T 2gbw_A 93 G---NAKAFVCNYHGWVFGQ-DGSLVD-VPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP 155 (454)
T ss_dssp E---ECSEEECTTTCCEEET-TSCEEE-CTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC
T ss_pred C---CcCEEEeCCCCCEecC-CCCccc-CCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC
Confidence 2 3579999999999999 899997 66543211 123445689999999999999999998753
No 22
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.87 E-value=2.5e-22 Score=165.88 Aligned_cols=95 Identities=19% Similarity=0.285 Sum_probs=87.3
Q ss_pred ccEEceeCCCCCCCCeEEEEECCcEEEEEEe---------------------------CCeEEEEcCCCCCCcc-ccccc
Q 022394 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA-YSEGL 141 (298)
Q Consensus 90 ~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~---------------------------~g~v~A~~n~CpH~Ga-Ls~G~ 141 (298)
.|..+ .+++|++|+.+.+.+.|++|+|+|. +|+++|+.|.|||+|+ |+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 58888 8999999999999999999999985 8999999999999997 98887
Q ss_pred cccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEE-ECCeEEE
Q 022394 142 INAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKT-DEKNIYI 202 (298)
Q Consensus 142 v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~-~~g~V~V 202 (298)
. .++.|+||||||+||+ ||+++. +|+..+|++|++++ ++|.|+|
T Consensus 84 ~-----~~~~i~CP~Hg~~fd~-~G~~~~-----------~P~~~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 G-----DFGGYYCPCHGSHYDA-SGRIRK-----------GPAPLNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp T-----TTEEEEETTTTEEEET-TCCEEE-----------SSCCSCCCCCCEEESSSSEEEE
T ss_pred C-----CCCEEEcCCCCCEEcC-CCCEee-----------CCCCCCCCceeEEEEeCCEEEE
Confidence 6 5689999999999999 999997 67778999999999 8999997
No 23
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.87 E-value=8.7e-23 Score=199.84 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=107.6
Q ss_pred cccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-cccccccc
Q 022394 68 KAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINA 144 (298)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g 144 (298)
-+++...++.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|||+|+ |+.|.+ +
T Consensus 18 ~y~~~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~-g 92 (447)
T 2bmo_A 18 IHGDKELFQHELK----TIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEA-G 92 (447)
T ss_dssp GGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSE-E
T ss_pred eeCCHHHHHHHHH----HhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCcccccc-C
Confidence 3566666666554 24577999999999999 6889999999999999997 9999999999999997 988876 2
Q ss_pred ccCCCCeEEcCCcCcEEeCCCCceecccCCCcc-cc-ccCCCCCCCccee-EEEECCeEEEEeCCCCC
Q 022394 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPV-LR-ALTPALSTLYIFP-VKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 145 ~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~-~~-~~~p~~~~L~~yp-V~~~~g~V~V~l~~~~~ 209 (298)
.++.|+||||||+||+ ||+|+. +|..+. .+ .+.+...+|++|+ |++.+|+|||+++++.+
T Consensus 93 ---~~~~l~CpyHgw~f~~-~G~~~~-~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~ 155 (447)
T 2bmo_A 93 ---NAKGFVCGYHGWGYGS-NGELQS-VPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAP 155 (447)
T ss_dssp ---ECSEEECTTTCCEEET-TSCEEE-CTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCC
T ss_pred ---CcCeEECCCCcchhcC-CCcccc-cCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCC
Confidence 3579999999999999 899997 665321 11 2344567899998 99999999999987743
No 24
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.87 E-value=1.6e-22 Score=198.85 Aligned_cols=134 Identities=12% Similarity=0.148 Sum_probs=111.0
Q ss_pred eecccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-cccccc
Q 022394 66 TCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLI 142 (298)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v 142 (298)
...+++...++.++. ....+.|+.||.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|+|||||+ |+.|..
T Consensus 37 ~~~Ytd~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~~ 112 (457)
T 3gzx_A 37 ARIYADQDLYQLELE----RVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDG 112 (457)
T ss_dssp GGGGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSE
T ss_pred HHHcCCHHHHHHHHH----HHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCCCC
Confidence 445777777777665 35688999999999998 6889999999999999997 9999999999999997 988764
Q ss_pred ccccCCCCeEEcCCcCcEEeCCCCceecccCCCcc-c------cc-cCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 143 NAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPV-L------RA-LTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 143 ~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~-~------~~-~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
+ .++.|+||||||+||+ +|+|+. +|..+. . .. +.+....|+.|+|++.+|+|||+++++.+
T Consensus 113 -g---~~~~i~CpyHgw~fd~-~G~~~~-~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap 181 (457)
T 3gzx_A 113 -G---NAKAFTCTYHGWAYDI-AGNLVN-VPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAP 181 (457)
T ss_dssp -E---ECSEEECTTTCCEEET-TSCEEE-CTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSC
T ss_pred -C---cCCEEEcCCCCCEecC-CCccee-cCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCC
Confidence 1 4679999999999999 799997 776431 1 11 33456789999999999999999998754
No 25
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.87 E-value=4.7e-22 Score=165.05 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=88.2
Q ss_pred CCccEEceeCCCCCCCCeEEEEEC--CcEEEEEEe----------CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEc
Q 022394 88 GENWVPVVPLSALPKGERRVIIQD--GETILLLWY----------KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVC 154 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~--G~~lvl~R~----------~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~C 154 (298)
+..|+.|+.++||++|+.+.+.+. +++++|+|. +|+++|+.|.|||+|+ |+.. . .++.|+|
T Consensus 5 ~~p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~-----~~~~i~C 78 (133)
T 1g8k_B 5 AYPATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-S-----SSKTFSC 78 (133)
T ss_dssp CCCCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-----TTTEEEC
T ss_pred CCCceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-c-----CCCEEEC
Confidence 345999999999999999999985 899999998 8999999999999997 8753 3 5689999
Q ss_pred CCcCcEEeCC-CCceecccCCCccccccCCCCCCCcceeEEEE--CCeEEEE
Q 022394 155 PTTESTFDLR-TGAVRDWYPNNPVLRALTPALSTLYIFPVKTD--EKNIYIR 203 (298)
Q Consensus 155 P~HG~~Fdl~-tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~--~g~V~V~ 203 (298)
|||||+||++ ||+++. +|+..+|++|+|+++ +|.|||.
T Consensus 79 P~Hg~~Fd~~~~G~~~~-----------gP~~~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 79 PCHFTEFDAEKAGQMIC-----------GEATADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp TTTCCEEEGGGTTEEEE-----------SSCSSCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCEECCCCCCCEEc-----------CCCCCCCCEEEEEEECCCCEEEEE
Confidence 9999999997 899997 677889999999999 6789986
No 26
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.86 E-value=4.1e-22 Score=195.97 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=105.5
Q ss_pred ccccccccccccCCCCCCCCCccEEceeCCCCC-CCCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-ccccccccc
Q 022394 69 AAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAK 145 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~-~g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g~ 145 (298)
+++...++.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|||+|+ |+.|.. |
T Consensus 38 y~d~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~-g- 111 (460)
T 1uli_A 38 YTDEALYEQELE----RIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADG-G- 111 (460)
T ss_dssp GTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSE-E-
T ss_pred cCCHHHHHHHHH----HhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccC-C-
Confidence 555555555554 24578999999999999 5788999999999999997 8999999999999997 988775 2
Q ss_pred cCCCCeEEcCCcCcEEeCCCCceecccCCCcc-ccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 146 LTQDGCIVCPTTESTFDLRTGAVRDWYPNNPV-LRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 146 ~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~-~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
.+++|+||||||+||+ ||+|+. +|..+. ...+.+...+|+.|+|++.+|+|||+++++.+
T Consensus 112 --~~~~i~CpyHgw~fd~-~G~~~~-~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p 172 (460)
T 1uli_A 112 --NAKSFTCSYHGWAYDT-GGNLVS-VPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP 172 (460)
T ss_dssp --ECSCEECTTTCCEECT-TCCEEE-CTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC
T ss_pred --CCCEEEcCCCCCEEeC-CCCEee-CCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC
Confidence 3579999999999999 899997 665321 11223445789999999999999999988743
No 27
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.85 E-value=2.4e-21 Score=190.83 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=103.7
Q ss_pred cccccccccccccCCCCCCCCCccEEceeCCCCCC-CCeEEEEECCcEEEEEEe-CCeEEEEcCCCCCCcc-cccccccc
Q 022394 68 KAAEVSVTEEESSASGGGGGGENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINA 144 (298)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~W~~V~~~~eL~~-g~~~~v~~~G~~lvl~R~-~g~v~A~~n~CpH~Ga-Ls~G~v~g 144 (298)
.+++....+.++. ....+.|+.||.++||++ |+.+.++++|++|+|+|+ +|+++|+.|+|||||+ |+.|.+.
T Consensus 27 ~Ytd~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g~~~- 101 (470)
T 2b1x_A 27 IINDPEVHDVERE----RIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMG- 101 (470)
T ss_dssp GSSCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEE-
T ss_pred HcCCHHHHHHHHH----HHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEecccCCCCCEeeccCcC-
Confidence 3555666666554 245789999999999994 788999999999999997 9999999999999997 9888772
Q ss_pred ccCCCCeEEcCCcCcEEeCCCCceecccCCCccc-c-ccCCCCCCCcce-eEEEECCeEEEEeCCCCC
Q 022394 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVL-R-ALTPALSTLYIF-PVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 145 ~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~-~-~~~p~~~~L~~y-pV~~~~g~V~V~l~~~~~ 209 (298)
.++.|+||||||+||+ ||+|+. +|..+.. + .+.+...+|..+ .|++.+|+|||+++++.+
T Consensus 102 ---~~~~i~CpyHgw~f~~-~G~~~~-~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~ 164 (470)
T 2b1x_A 102 ---NTSHFRCPYHGWTYSN-TGSLVG-VPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHAD 164 (470)
T ss_dssp ---ECSEEECTTTCCEEET-TSCEEE-CTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCC
T ss_pred ---CCCEEEECCCCCeecC-CCceee-cCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCC
Confidence 2479999999999999 899997 6653211 1 122334567788 566679999999987753
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.84 E-value=2.5e-21 Score=161.99 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=87.9
Q ss_pred CCCCccEEcee-CCCCCCCCeEEEE-ECCcEEEEEEe-CCeE--EEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCc
Q 022394 86 GGGENWVPVVP-LSALPKGERRVII-QDGETILLLWY-KDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTES 159 (298)
Q Consensus 86 ~~~~~W~~V~~-~~eL~~g~~~~v~-~~G~~lvl~R~-~g~v--~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~ 159 (298)
.....|+.++. ++||++|..+.+. +.|++++++|. +|++ +|++|+|||+|+ |+.|. .++.|+||||||
T Consensus 17 ~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~------~~~~i~CP~Hg~ 90 (139)
T 1rfs_A 17 DALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA------AENKFICPCHGS 90 (139)
T ss_dssp CTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET------TTTEEECTTTCC
T ss_pred cCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC------CCCEEEcCCCCC
Confidence 44578999998 8999998887776 46777766665 9999 999999999997 87665 357999999999
Q ss_pred EEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCC
Q 022394 160 TFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEG 206 (298)
Q Consensus 160 ~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~ 206 (298)
+||. ||+|+. .|+..+|++|+|++++|.|||.+..
T Consensus 91 ~Fd~-tG~~~~-----------~P~~~~L~~~~v~v~~g~V~V~~~~ 125 (139)
T 1rfs_A 91 QYNN-QGRVVR-----------GPAPLSLALAHCDVDDGKVVFVPWT 125 (139)
T ss_dssp EEET-TCCEEE-----------SSCCSCCCEEEEEEETTEEEEEECC
T ss_pred EECC-CCCCcc-----------CCCCCCCCEEEEEEECCEEEEEeCC
Confidence 9997 999997 6777899999999999999999754
No 29
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.84 E-value=3e-21 Score=167.47 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCccEEceeCCCCCCCCeEEEEECC--cEEEEEEe----------CCeEEEEcCCCCCCcc-ccccccccccCCCCeEEc
Q 022394 88 GENWVPVVPLSALPKGERRVIIQDG--ETILLLWY----------KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVC 154 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~G--~~lvl~R~----------~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~C 154 (298)
...+..||+++||++|+.+.+++.+ ++++|+|. +|+++|++|.|||+|+ |+.| . .++.|+|
T Consensus 48 ~~p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~-----~~~~i~C 121 (175)
T 4aay_B 48 EYPANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-A-----DNKTFNC 121 (175)
T ss_dssp CCCCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-----TTTEEEC
T ss_pred CCCcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-C-----CCCEEEc
Confidence 3457799999999999999999874 58999997 8999999999999997 8877 4 5789999
Q ss_pred CCcCcEEeCC-CCceecccCCCccccccCCCCCCCcceeEEE-ECCeEEEE
Q 022394 155 PTTESTFDLR-TGAVRDWYPNNPVLRALTPALSTLYIFPVKT-DEKNIYIR 203 (298)
Q Consensus 155 P~HG~~Fdl~-tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~-~~g~V~V~ 203 (298)
|||||+||++ ||+|+. +|+..+|++|+|++ ++|.||+-
T Consensus 122 P~Hg~~Fd~~~tG~~~~-----------gPa~~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 122 PGHFSVFDPEKGGQQVW-----------GQATQNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp TTTCCEEEGGGTTEEEE-----------CSCSSCCCBEEEEECTTSEEEEE
T ss_pred CCCCCEECCCCCceEec-----------CCCCCCcCEEEEEEEcCCEEEEE
Confidence 9999999998 899997 78888999999999 58999854
No 30
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.79 E-value=5.1e-19 Score=154.65 Aligned_cols=97 Identities=22% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCccEEceeCCCCCCCCeEEEEECCcEEEEEEe---------------------------CCeEEEEcCCCCCCcc-ccc
Q 022394 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA-YSE 139 (298)
Q Consensus 88 ~~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~---------------------------~g~v~A~~n~CpH~Ga-Ls~ 139 (298)
...|+.| .+++|++|+.+.+++.|++|+|+|. +|+++|+.|.|||+|+ +..
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 4579999 6999999999999999999999986 5899999999999997 422
Q ss_pred cccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEECCeEEE
Q 022394 140 GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYI 202 (298)
Q Consensus 140 G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V 202 (298)
... +++.+.||||||+||+ +|+++. +|+..+|++|++++++|.|||
T Consensus 139 ~~~-----~~~~~~CPcHGs~FD~-~G~v~~-----------gPa~~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAG-----DFGGWFCPCHGSHYDI-SGRIRK-----------GPAPLNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EET-----TTTEEEETTTTEEECT-TCCEEE-----------SSCCSCCCCCCEEEETTEEEE
T ss_pred CCC-----CCCEEEcCCCCCEECC-CCCEec-----------CCCCCCcceEEEEEECCEEEE
Confidence 211 4579999999999999 899997 688889999999999999997
No 31
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=1e-20 Score=157.27 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=83.6
Q ss_pred CCccEEce-eCCCCCCCCeEEEE--ECCcEEEEEEeCCe--EEEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEE
Q 022394 88 GENWVPVV-PLSALPKGERRVII--QDGETILLLWYKDE--VFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTF 161 (298)
Q Consensus 88 ~~~W~~V~-~~~eL~~g~~~~v~--~~G~~lvl~R~~g~--v~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~F 161 (298)
...++.+. .++|+++|+.+.+. +++..|++++.+|+ ++|++|+|||+|+ |+.|. .++.|+||||||+|
T Consensus 13 ~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~------~~~~i~CP~Hg~~F 86 (133)
T 3azc_A 13 LGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV------SENKFICPCHGSQY 86 (133)
Confidence 34555555 46789988888877 66666667777888 9999999999997 87765 25789999999999
Q ss_pred eCCCCceecccCCCccccccCCCCCCCcceeEEE-ECCeEEEEeCCC
Q 022394 162 DLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKT-DEKNIYIRMEGG 207 (298)
Q Consensus 162 dl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~-~~g~V~V~l~~~ 207 (298)
| .||+|+. .|+..+|++|+|++ ++|.|||....+
T Consensus 87 d-~tG~~~~-----------~P~~~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 87 D-STGKVVR-----------GPAPLSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 9 5999997 57777899999999 999999997643
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.78 E-value=4.3e-19 Score=156.40 Aligned_cols=93 Identities=19% Similarity=0.275 Sum_probs=84.2
Q ss_pred EceeCCCCCCCCeEEEEECCcEEEEEEe---------------------------CCeEEEEcCCCCCCcc-cccccccc
Q 022394 93 PVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA-YSEGLINA 144 (298)
Q Consensus 93 ~V~~~~eL~~g~~~~v~~~G~~lvl~R~---------------------------~g~v~A~~n~CpH~Ga-Ls~G~v~g 144 (298)
..+.+++|++|+.+.++..|++|+|+|. +|+++|+.|.|||+|+ |+.|..
T Consensus 74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~-- 151 (196)
T 1pp9_E 74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAG-- 151 (196)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCS--
T ss_pred cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCC--
Confidence 3478999999999999999999999985 8899999999999998 887765
Q ss_pred ccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEE-ECCeEEE
Q 022394 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKT-DEKNIYI 202 (298)
Q Consensus 145 ~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~-~~g~V~V 202 (298)
+.+.|.||||||+||+ +|+++. +|+..+|.+|++++ ++|.|+|
T Consensus 152 ---~~~~~~CP~HGs~FD~-~G~v~~-----------gPa~~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 152 ---DFGGYYCPCHGSHYDA-SGRIRK-----------GPAPLNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp ---TTSSEEETTTTEEECT-TCCEEE-----------SSCCSCCCCCCEEEETTTEEEE
T ss_pred ---CCCEEEeCCCCCEECC-CCCCcc-----------CCCCCCCcceeEEEEECCEEEE
Confidence 4588999999999999 899997 78888999999999 7999987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.78 E-value=1.2e-18 Score=152.48 Aligned_cols=97 Identities=23% Similarity=0.254 Sum_probs=84.1
Q ss_pred CccEEceeCCCCCCCCeEEEEECCcEEEEEEe-----------------------------------------CCeEEEE
Q 022394 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-----------------------------------------KDEVFAI 127 (298)
Q Consensus 89 ~~W~~V~~~~eL~~g~~~~v~~~G~~lvl~R~-----------------------------------------~g~v~A~ 127 (298)
..|+.+ .+++|++|+.+.++..|++|+|+|. +|+++|+
T Consensus 47 ~~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~ 125 (187)
T 2qjy_C 47 LASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVM 125 (187)
T ss_dssp CCCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEE
T ss_pred cccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEE
Confidence 358776 8999999999999999999999982 7899999
Q ss_pred cCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEEE-CCeEEE
Q 022394 128 ENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKTD-EKNIYI 202 (298)
Q Consensus 128 ~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~-~g~V~V 202 (298)
.|.|||+|+ |+.+ ..+ ..+.|.||||||+||+ +|+++. +|+..+|++|+++++ ++.|+|
T Consensus 126 ~~~C~H~G~~l~~~-~~g---~~~~~~CP~Hg~~Fd~-~G~~~~-----------gPa~~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 126 WGVCTHLGCSPIGG-VSG---DFGGWFCPCHGSHYDS-AGRIRK-----------GPAPENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp ECCCTTTSCCCEEE-EET---TTTEEEETTTTEEECT-TSCEEE-----------SSCCSCCCBCSEEEEETTEEEE
T ss_pred eCccCCCCeECccC-cCC---CcCEEEeCCCCCEECC-CCeEeC-----------CCCCCCCceEEEEEEeCCEEEE
Confidence 999999997 8764 211 3479999999999999 799997 688889999999997 789987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.78 E-value=8.5e-19 Score=146.99 Aligned_cols=90 Identities=23% Similarity=0.235 Sum_probs=81.0
Q ss_pred eCCCCCCCCeEEEEECCcEEEEEEe-----------------------------------------CCeEEEEcCCCCCC
Q 022394 96 PLSALPKGERRVIIQDGETILLLWY-----------------------------------------KDEVFAIENRSPAE 134 (298)
Q Consensus 96 ~~~eL~~g~~~~v~~~G~~lvl~R~-----------------------------------------~g~v~A~~n~CpH~ 134 (298)
.+++|++|+.+.++..|++|.|.|. +|+++|+.|.|||+
T Consensus 7 d~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H~ 86 (141)
T 2nwf_A 7 DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHL 86 (141)
T ss_dssp ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTTT
T ss_pred ecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCCC
Confidence 6789999999999999999999985 68899999999999
Q ss_pred cc-ccc-cccccccCCCCeEEcCCcCcEEeCCCCceecccCCCccccccCCCCCCCcceeEEE-ECCeEEE
Q 022394 135 GA-YSE-GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVLRALTPALSTLYIFPVKT-DEKNIYI 202 (298)
Q Consensus 135 Ga-Ls~-G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~~P~~p~~~~~~p~~~~L~~ypV~~-~~g~V~V 202 (298)
|+ |+. +.. .++.|.||||||+||+ +|+++. +|+..+|.+|++++ ++|.|+|
T Consensus 87 G~~l~~~~~~-----~~~~~~CP~Hgs~Fd~-~G~~~~-----------gPa~~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 87 GCVPIGGVSG-----DFGGWFCPCHGSHWDS-AGRIRK-----------GPAPENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp CCCCEEEEET-----TTTEEEETTTTEEECT-TSCEEE-----------SSCCSCCCBCSEEESSSSEEEE
T ss_pred CeEccccCcc-----CCCEEEcCCCCCEECC-CCCCcc-----------CCCCCCCCceeEEEEECCEEEE
Confidence 97 876 543 4589999999999999 899997 68888999999999 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.77 E-value=6e-19 Score=151.60 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=78.5
Q ss_pred eCCCCCCCCeEEEEECCc-------------EEEEEEe-------------CCeEEEEcCCCCCCcc-ccccccccccCC
Q 022394 96 PLSALPKGERRVIIQDGE-------------TILLLWY-------------KDEVFAIENRSPAEGA-YSEGLINAKLTQ 148 (298)
Q Consensus 96 ~~~eL~~g~~~~v~~~G~-------------~lvl~R~-------------~g~v~A~~n~CpH~Ga-Ls~G~v~g~~~~ 148 (298)
.+++|++|+.+.+...|. .+++.|. .++++|+.|.|||+|+ |++|.. .
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~gv~A~~~~CpH~G~~L~~g~~-----~ 100 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVA-----D 100 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTTEEEEECBCTTTCCBCCEEEG-----G
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCCEEEEEeecCCCCeEcccccC-----C
Confidence 567777777666654222 2555564 2459999999999998 888877 5
Q ss_pred CCeEEcCCcCcEEeCCCCc-eecccCCCccccccCCCCCCCcceeEEEECCeEEEEeCCCCC
Q 022394 149 DGCIVCPTTESTFDLRTGA-VRDWYPNNPVLRALTPALSTLYIFPVKTDEKNIYIRMEGGAS 209 (298)
Q Consensus 149 ~~~I~CP~HG~~Fdl~tG~-~~~~~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~~~~~ 209 (298)
++.|.||||||+||++||. |+. +|+..+|..|++++++|.|||+++..++
T Consensus 101 ~~~i~CP~Hgs~Fd~~tG~~~~~-----------gPa~~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 101 EEAALCPCHGGVYDLRHGAQVIA-----------GPPPRPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp GTEEECTTTCCEEEGGGTTEEEE-----------SSCSSCCCEECEEEETTEEEECSSCSSC
T ss_pred CCEEECCCCCCEEcCCCCCeeec-----------CCCCCCCcEEEEEEECCEEEEEecCccc
Confidence 6799999999999998896 887 6777899999999999999999887644
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.68 E-value=1.9e-18 Score=150.06 Aligned_cols=91 Identities=21% Similarity=0.332 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEE-ECCcEEEEEEe-CCeE--EEEcCCCCCCcc-ccccccccccCCCCeEEcCCcCcEEeCCCCceecc
Q 022394 97 LSALPKGERRVII-QDGETILLLWY-KDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (298)
Q Consensus 97 ~~eL~~g~~~~v~-~~G~~lvl~R~-~g~v--~A~~n~CpH~Ga-Ls~G~v~g~~~~~~~I~CP~HG~~Fdl~tG~~~~~ 171 (298)
+++|++|+.+.+. +.|++++++|. +|++ +|+.|.|||+|+ |+.+. .++.|.||||||+||+ +|+|+.
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~------~~~~~~CP~Hgs~Fd~-~G~~~~- 141 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA------AENKFKCPCHGSQYDE-TGRVIR- 141 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS------SSSSEECTTTCCEECS-SSCCCS-
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC------CCCEEECCCCCCEECC-CCcEec-
Confidence 4688888887776 67888877765 8887 999999999998 87654 3578999999999998 899997
Q ss_pred cCCCccccccCCCCCCCcceeEEEECCeEEEEeC
Q 022394 172 YPNNPVLRALTPALSTLYIFPVKTDEKNIYIRME 205 (298)
Q Consensus 172 ~P~~p~~~~~~p~~~~L~~ypV~~~~g~V~V~l~ 205 (298)
+|+..+|++|++++++|.|||.+-
T Consensus 142 ----------gPa~~~L~~~~v~v~~g~v~v~~~ 165 (179)
T 1vf5_D 142 ----------GPAPLSLALCHATVQDDNIVLTPW 165 (179)
T ss_dssp ----------SSCCSCCBCCCCCCSSSSCCCCCC
T ss_pred ----------CCCCCCCCeEEEEEECCEEEEEee
Confidence 788889999999999999999863
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.62 E-value=1.1e-16 Score=141.75 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=71.2
Q ss_pred EEEEECCcEEEEEEe-------------CCeEEEEcCCCCCCcc-ccccccccc------cCCCCeEEcCCcCcEEeCCC
Q 022394 106 RVIIQDGETILLLWY-------------KDEVFAIENRSPAEGA-YSEGLINAK------LTQDGCIVCPTTESTFDLRT 165 (298)
Q Consensus 106 ~~v~~~G~~lvl~R~-------------~g~v~A~~n~CpH~Ga-Ls~G~v~g~------~~~~~~I~CP~HG~~Fdl~t 165 (298)
+.+++.+.+++++|. +|+++|+.|.|||+|+ |+.|.+... -..++.|.||||||+||++|
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 445667777777775 5899999999999997 887753000 00467999999999999977
Q ss_pred C-ceecccCCCccccccCCCCCCCcceeEEEE--CCeEEEEeCC
Q 022394 166 G-AVRDWYPNNPVLRALTPALSTLYIFPVKTD--EKNIYIRMEG 206 (298)
Q Consensus 166 G-~~~~~~P~~p~~~~~~p~~~~L~~ypV~~~--~g~V~V~l~~ 206 (298)
| +++. +|+..+|+.|+++++ +|.|||....
T Consensus 136 GG~v~~-----------gPa~~~L~~~~v~v~~~~g~v~v~g~~ 168 (204)
T 1jm1_A 136 GGVVVS-----------GPAPRPLPIVILDYDSSTGDIYAVGTN 168 (204)
T ss_dssp TSEEEE-----------SSCCSCCCBEEEEECTTTCEEEEEEES
T ss_pred CCeEec-----------CCCCCCCCeEeeEEEecCCEEEEEeCC
Confidence 6 9986 677788999999998 8999987643
No 38
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.64 E-value=9.2e-06 Score=72.94 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.5
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
.+...+.+|+.|||+||+||+..++.|.+||+|++.++.
T Consensus 172 ~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~ 210 (232)
T 2bhw_A 172 AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHH
T ss_pred HHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345567789999999999999999999999999999863
No 39
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.61 E-value=1.3e-05 Score=72.25 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=34.6
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCccccccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 283 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~ 283 (298)
.+.....+|+.|||+||+||+..++.|++||+|.+.++
T Consensus 189 ~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l 226 (243)
T 3pl9_A 189 KKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNW 226 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 45567778999999999999999999999999999887
No 40
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.60 E-value=7e-06 Score=75.10 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
..+.....+|+.|||+||+||+..++.|.+||+|++.++.
T Consensus 212 e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 212 QKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3466778889999999999999999999999999999875
No 41
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.60 E-value=1.2e-05 Score=73.74 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=31.1
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
.+.....+|+.|||+||+||+..++.|++||+|++.++.
T Consensus 220 ~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 220 SLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 355677889999999999999999999999999999873
No 42
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.39 E-value=3.5e-05 Score=69.48 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=34.2
Q ss_pred CccceeecccchhHHHHHHHHHHHHHH-HhhCcccccccc
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFE-LLTGKGLLKGTG 284 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e-~~tg~~~l~~~g 284 (298)
.+.....+|+.|||+||+||+..++.| .+||+|++.+++
T Consensus 183 ~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 183 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp SCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 455567789999999999999999999 589999999876
No 43
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=96.95 E-value=7.7e-05 Score=67.64 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.2
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHHhhCcccc
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 280 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l 280 (298)
..+.+...+|++|||+||+|++..++.|++++.|++
T Consensus 86 e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp CCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 467889999999999999999999999999998876
No 44
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=96.39 E-value=0.00064 Score=61.60 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.2
Q ss_pred ceeecccchhHHHHHHHHHHHHHHHhhCcccccccc
Q 022394 249 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 284 (298)
Q Consensus 249 f~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l~~~g 284 (298)
-.+.+|+-|||| |+|++..+++|.+||++.+.++.
T Consensus 199 ~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~ 233 (251)
T 2wsc_4 199 EAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLL 233 (251)
T ss_dssp SCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTT
T ss_pred HHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHH
Confidence 345679999999 99999999999999999998863
No 45
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=96.20 E-value=0.00013 Score=66.90 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.8
Q ss_pred cceeecccchhHHHHHHHHHHHHHHHhhCcccc
Q 022394 248 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 280 (298)
Q Consensus 248 gf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l 280 (298)
.|...+|++|||+||+|++..++.|++++.|++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 788899999999999999999999999988865
No 46
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=95.85 E-value=0.0018 Score=59.12 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=31.9
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHHhhCcccc
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 280 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~~~l 280 (298)
..+.+...+|+.|||+||+|++..++.|++++.|++
T Consensus 97 e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 97 ESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp SCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 457788889999999999999999999999977664
No 47
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=95.77 E-value=0.0026 Score=57.14 Aligned_cols=33 Identities=36% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCccceeecccchhHHHHHHHHHHHHHHHhhCc
Q 022394 245 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGK 277 (298)
Q Consensus 245 ~~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg~ 277 (298)
..+.+...+|+.|||+||+|++..++.|+++|.
T Consensus 87 ~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 87 FGLQRFRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 346678888999999999999999999999763
No 48
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=94.24 E-value=0.012 Score=52.59 Aligned_cols=31 Identities=32% Similarity=0.266 Sum_probs=27.4
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhhC
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLTG 276 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~tg 276 (298)
.+.+...+|+.|||+||+|++..++.|+++.
T Consensus 57 ~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 57 TFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 4667788999999999999999999998764
No 49
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=84.93 E-value=0.032 Score=50.06 Aligned_cols=30 Identities=27% Similarity=0.125 Sum_probs=26.0
Q ss_pred CccceeecccchhHHHHHHHHHHHHHHHhh
Q 022394 246 GFGFNVTSELINGKAAAIGFLLLLDFELLT 275 (298)
Q Consensus 246 ~fgf~~~aE~~NGR~Am~g~~~~~~~e~~t 275 (298)
.+.+...+|+.|||+||++++..++.|+++
T Consensus 79 ~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 79 NLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp HHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred HHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 456677889999999999999999999854
No 50
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=48.89 E-value=18 Score=27.67 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=33.0
Q ss_pred eCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeC
Q 022394 120 YKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 120 ~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
.+|+++..++-||.+-|...|++.. .+..|+|==|.-.-.+
T Consensus 48 ~dg~vrv~es~CPdkiCv~~GwIs~---~Gq~IVCLPnklvI~I 88 (101)
T 3ld7_A 48 DGERIRIKEDNSPDQVGVKMGWKSK---AGDTIVCLPHKVFVEI 88 (101)
T ss_dssp ETTEEEEEEECCSSCHHHHHCCBCS---TTCEEEETTTTEEEEE
T ss_pred ECCEEEEEECCCCCcccccCCCcCC---CCCEEEEcCCEEEEEE
Confidence 4999999999999998877788842 4678999777666555
No 51
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=48.67 E-value=29 Score=26.74 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=39.9
Q ss_pred EEEEECCcEEEEEEeCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeCC
Q 022394 106 RVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (298)
Q Consensus 106 ~~v~~~G~~lvl~R~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl~ 164 (298)
+.+++.|..++ .=.+|+++..++-||.+-|...|++.. .+..|+|-=|.-.-.++
T Consensus 38 ~~i~i~g~n~I-eI~dg~vrv~es~CPdkiCv~~GwIs~---~Gq~IVCLPnklvI~I~ 92 (104)
T 4esn_A 38 QTIEIQDGNRL-RIQNGQAKMEWADCPDQLCVHQKAISR---TGESIICLPNQVVVSVQ 92 (104)
T ss_dssp EEEEETTTEEE-EEETTEEEEEEECCSSCHHHHSCCBCS---TTCEEEETTTTEEEEEE
T ss_pred cEEEECCcEEE-EEECCEEEEEECCCCCcchhhCCCcCC---CCCEEEEcCCEEEEEEE
Confidence 44555564433 234999999999999998877888842 46789998887766653
No 52
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=45.04 E-value=35 Score=30.23 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=30.9
Q ss_pred eCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeC
Q 022394 120 YKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 120 ~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
.+|+++..++-||.+ |...|++.. .|..|+|==|.-.-..
T Consensus 89 ~dG~irv~es~cPdq-Cv~~G~I~k---~G~~IvCLPnrv~I~I 128 (248)
T 1m1h_A 89 ENGEVKVVESVEGDT-CVNAPPISK---PGQKITCKENKTEAKI 128 (248)
T ss_dssp CSSCEEEEECSTTCG-GGGSCCBCS---TTCEEEETTTTEEEEE
T ss_pred ECCEEEEEECCCChh-hhccccccc---CCCEEEecCCeEEEEE
Confidence 489999999999999 987888842 5678998666554443
No 53
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=42.92 E-value=36 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=34.8
Q ss_pred EEEeCCeEEEEcCCCCCCccccccccccccCCCCeEEcCCcCcEEeC
Q 022394 117 LLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (298)
Q Consensus 117 l~R~~g~v~A~~n~CpH~GaLs~G~v~g~~~~~~~I~CP~HG~~Fdl 163 (298)
+.=.+|+++..++-||.+-|...|++.. .+..|+|-=|.-.-.+
T Consensus 45 IeIkdg~vrv~es~CPdkiCv~~GwIsk---~Gq~IVCLPnkvvI~I 88 (114)
T 2kpp_A 45 MEVDGERIRIKEDNSPDQVGVKMGWKSK---AGDTIVCLPHKVFVEI 88 (114)
T ss_dssp EEEESSCEEEEEECCSSCHHHHHCSBCS---TTCEEEEGGGTEEEEE
T ss_pred EEEECCEEEEEECCCCCeehhhcCCcCC---CCCEEEEcCCEEEEEE
Confidence 3335999999999999998877788842 5678999888776665
No 54
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0
Probab=31.43 E-value=14 Score=30.90 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.0
Q ss_pred CCcCcEEeCCCCceec
Q 022394 155 PTTESTFDLRTGAVRD 170 (298)
Q Consensus 155 P~HG~~Fdl~tG~~~~ 170 (298)
..|||.||++||++..
T Consensus 149 ~V~G~vydi~tG~l~~ 164 (166)
T 3las_A 149 IISGAIYDVDTGRVRE 164 (166)
T ss_dssp EEEEEEECTTTCCEEE
T ss_pred EEEEEEEECCCcEEEE
Confidence 4899999999999863
No 55
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis}
Probab=28.63 E-value=17 Score=30.36 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.8
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
...|||.||++||++..
T Consensus 153 l~v~G~~ydi~tG~v~~ 169 (172)
T 1ylk_A 153 TSLRGFVFDVATGKLNE 169 (172)
T ss_dssp SEEEEEEECTTTCCEEE
T ss_pred CEEEEEEEECCCCeEEE
Confidence 47899999999999864
No 56
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=25.77 E-value=19 Score=31.40 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=15.0
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
...|||.||++||++..
T Consensus 177 l~vhG~~Ydi~tG~v~~ 193 (223)
T 3qy1_A 177 VTIHGWAYSINDGLLRD 193 (223)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 46899999999999875
No 57
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Probab=25.29 E-value=19 Score=29.83 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=15.1
Q ss_pred EcCCcCcEEeCCCCceec
Q 022394 153 VCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 153 ~CP~HG~~Fdl~tG~~~~ 170 (298)
....|||.||++||++..
T Consensus 148 ~l~v~G~~ydi~tG~v~~ 165 (170)
T 1g5c_A 148 SIGVHGLIIDINTGRLKP 165 (170)
T ss_dssp TSEEEEEEECTTTCCEEE
T ss_pred CCEEEEEEEECCCCeEEE
Confidence 456899999999999853
No 58
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=24.58 E-value=21 Score=30.93 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=14.2
Q ss_pred cCCcCcEEeCCCCcee
Q 022394 154 CPTTESTFDLRTGAVR 169 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~ 169 (298)
...|||.||++||++.
T Consensus 192 l~v~G~~ydi~tG~v~ 207 (221)
T 1ekj_A 192 LALKGGYYDFVKGSFE 207 (221)
T ss_dssp CEEEEEEEETTTTEEE
T ss_pred cEEEEEEEECCCCeEE
Confidence 5689999999999975
No 59
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A
Probab=23.44 E-value=24 Score=30.95 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.2
Q ss_pred CCcCcEEeCCCCceec
Q 022394 155 PTTESTFDLRTGAVRD 170 (298)
Q Consensus 155 P~HG~~Fdl~tG~~~~ 170 (298)
-.|||.||++||++..
T Consensus 182 ~V~G~~Ydi~tG~v~~ 197 (227)
T 3ucj_A 182 SVHGIVYTPGTGLVKE 197 (227)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred EEEEEEEECCCCEEEE
Confidence 4799999999999875
No 60
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Probab=23.20 E-value=23 Score=31.11 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.6
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
.-.|||.||++||++..
T Consensus 174 l~IhG~~Ydi~tG~v~~ 190 (229)
T 3e3i_A 174 LSLHGWVYDVNDGFLVD 190 (229)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 34899999999999874
No 61
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A
Probab=22.82 E-value=21 Score=30.86 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.8
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
...|||.||++||++..
T Consensus 188 l~V~G~~Ydi~tG~v~~ 204 (215)
T 1ym3_A 188 LAIVGVTYQLDDGRAVL 204 (215)
T ss_dssp CEEEEEEECTTTCCCEE
T ss_pred cEEEEEEEECCCCeEEE
Confidence 46899999999999864
No 62
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=22.70 E-value=24 Score=31.16 Aligned_cols=18 Identities=28% Similarity=0.312 Sum_probs=15.7
Q ss_pred EcCCcCcEEeCCCCceec
Q 022394 153 VCPTTESTFDLRTGAVRD 170 (298)
Q Consensus 153 ~CP~HG~~Fdl~tG~~~~ 170 (298)
....|||.||++||++..
T Consensus 208 ~l~VhG~vYdi~tG~v~~ 225 (243)
T 2w3q_A 208 EVFVHGWLYDLSTGNIVD 225 (243)
T ss_dssp CCEEEEEEEETTTTEEEE
T ss_pred ceEEEEEEEECCCCeEEE
Confidence 457899999999999875
No 63
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=22.56 E-value=50 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.585 Sum_probs=16.3
Q ss_pred CCCeEEcCCcCcEEeCCCCc
Q 022394 148 QDGCIVCPTTESTFDLRTGA 167 (298)
Q Consensus 148 ~~~~I~CP~HG~~Fdl~tG~ 167 (298)
.++...|||-|.+|-++.+.
T Consensus 37 ~~g~~~CpYCg~~f~l~~~~ 56 (67)
T 2jrr_A 37 DTGWVECPYCDCKYVLKGSK 56 (67)
T ss_dssp TTSEEEETTTTEEEEETTSG
T ss_pred CCCeEECCCCCCEEEECCCc
Confidence 35789999999999986443
No 64
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Probab=21.93 E-value=26 Score=30.53 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=14.8
Q ss_pred cCCcCcEEeCCCCceec
Q 022394 154 CPTTESTFDLRTGAVRD 170 (298)
Q Consensus 154 CP~HG~~Fdl~tG~~~~ 170 (298)
...|||.||++||++..
T Consensus 190 L~vhG~~Ydi~tG~v~~ 206 (216)
T 3eyx_A 190 LQVYGLLYNVEDGLLQT 206 (216)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred cEEEEEEEECCCcEEEE
Confidence 45899999999999874
Done!