BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022396
         (298 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q84WN0|Y4920_ARATH Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis
           thaliana GN=At4g37920 PE=1 SV=2
          Length = 427

 Score =  334 bits (857), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 162/232 (69%), Positives = 192/232 (82%), Gaps = 7/232 (3%)

Query: 59  SFKTNTLSSSHRTSRQVCGVVTANAEMEEDQSEKEVAEGYTLTQFCDKIIDVFLNEKPRV 118
           +F T+T++ +  TS +V   V       ED  E EVAEGYT+ QFCDKIID+FLNEKP+V
Sbjct: 49  TFATDTVTYNGTTSAEVKSSV-------EDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKV 101

Query: 119 KQWRKYLVFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYEL 178
           KQW+ YLV R++WNKY  +FY RCR RAD E++P +K+KL+SL  KVKKID EME H +L
Sbjct: 102 KQWKTYLVLRDEWNKYSVNFYKRCRIRADTETDPILKQKLVSLESKVKKIDKEMEKHNDL 161

Query: 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAY 238
           LKEIQ++PTDINA+ A+RR+DFTGEFFRY++L+SET D LED DAVARLATRCLSAVSAY
Sbjct: 162 LKEIQENPTDINAIAAKRRRDFTGEFFRYVTLLSETLDGLEDRDAVARLATRCLSAVSAY 221

Query: 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSSLILLING 290
           D TLE VETLD+AQAKF+DILNSPSVD ACEKI+SLAKAKELDSSLILLIN 
Sbjct: 222 DNTLESVETLDTAQAKFEDILNSPSVDSACEKIRSLAKAKELDSSLILLINS 273


>sp|Q2YXX0|SBCC_STAAB Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain bovine
           RF122 / ET3-1) GN=sbcC PE=3 SV=2
          Length = 1009

 Score = 34.7 bits (78), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 6/68 (8%)

Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
           V   D NKY++S+ N  R R + E    + ++L +L + ++K++D +   ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LGDELNNLIKGLEKVEDSIGNNESDYEKIIEL 436

Query: 183 QDSPTDIN 190
            ++ T+IN
Sbjct: 437 NNAITNIN 444


>sp|Q6GH60|SBCC_STAAR Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain MRSA252)
           GN=sbcC PE=3 SV=1
          Length = 1009

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 126 VFREDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEM---ESHYELLKEI 182
           V   D NKY++S+ N  R R + E    + ++L +L   ++K++D +   ES YE + E+
Sbjct: 380 VLFNDINKYQQSYLNIERLRTEGEQ---LADELNNLIEGLEKVEDSIGNNESDYEKIIEL 436

Query: 183 QDSPTDIN 190
            ++ T+IN
Sbjct: 437 NNAITNIN 444


>sp|P13542|MYH8_MOUSE Myosin-8 OS=Mus musculus GN=Myh8 PE=1 SV=2
          Length = 1937

 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 178  LLKEIQDSPTDI---NAVVA---RRRKDFTGEFFRYLSLVSETHDSLEDCDAVAR-LATR 230
            L  E++D   D+   NA  A   +++++F      +     ET   LE C   +R L+T 
Sbjct: 1424 LQNEVEDLMIDVERTNAACAALDKKQRNFDKVLSEWRQKYEETQAELESCQKESRTLSTE 1483

Query: 231  CLSAVSAYDKTLEHVETL 248
                 +AY+++L+H+ETL
Sbjct: 1484 LFKVKNAYEESLDHLETL 1501


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,513,746
Number of Sequences: 539616
Number of extensions: 3664360
Number of successful extensions: 15252
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 15182
Number of HSP's gapped (non-prelim): 190
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)