Query 022396
Match_columns 298
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03705 CheR_N: CheR methyltr 59.6 26 0.00056 24.5 4.8 55 129-188 3-57 (57)
2 KOG4559 Uncharacterized conser 52.3 28 0.00062 30.0 4.6 22 235-256 95-116 (120)
3 PF01213 CAP_N: Adenylate cycl 50.6 48 0.001 32.3 6.5 57 154-215 84-140 (312)
4 cd07908 Mn_catalase_like Manga 46.6 93 0.002 25.8 6.8 45 128-182 26-70 (154)
5 PF08900 DUF1845: Domain of un 46.4 71 0.0015 29.2 6.6 89 136-243 40-133 (217)
6 cd07316 terB_like_DjlA N-termi 45.7 1.3E+02 0.0029 22.9 7.8 51 145-195 11-61 (106)
7 PF02520 DUF148: Domain of unk 45.4 1E+02 0.0022 24.7 6.6 52 239-290 54-107 (113)
8 PF04391 DUF533: Protein of un 43.3 86 0.0019 28.5 6.6 83 144-231 90-173 (188)
9 TIGR03042 PS_II_psbQ_bact phot 41.8 1.5E+02 0.0034 26.1 7.7 51 207-259 81-131 (142)
10 PF10112 Halogen_Hydrol: 5-bro 40.6 2.1E+02 0.0046 25.0 8.4 83 140-240 85-178 (199)
11 PF05099 TerB: Tellurite resis 39.5 1.1E+02 0.0024 24.4 6.0 86 145-230 35-127 (140)
12 cd07313 terB_like_2 tellurium 38.1 1.8E+02 0.004 22.2 8.4 58 145-202 11-69 (104)
13 TIGR03883 DUF2342_F420 unchara 35.4 1.2E+02 0.0026 30.1 6.7 93 115-243 153-255 (346)
14 PRK13441 F0F1 ATP synthase sub 34.9 86 0.0019 27.1 5.1 46 239-284 25-74 (180)
15 KOG4234 TPR repeat-containing 34.5 1.6E+02 0.0034 28.7 7.0 97 170-274 113-211 (271)
16 KOG3030 Lipid phosphate phosph 34.2 8.8 0.00019 37.3 -1.2 17 132-148 134-150 (317)
17 PF03993 DUF349: Domain of Unk 34.0 61 0.0013 23.7 3.5 41 130-170 6-51 (77)
18 PF06552 TOM20_plant: Plant sp 33.9 1.1E+02 0.0023 28.3 5.7 64 204-268 6-72 (186)
19 cd09234 V_HD-PTP_like Protein- 33.0 4.1E+02 0.0089 25.4 9.7 57 153-209 185-244 (337)
20 PF05227 CHASE3: CHASE3 domain 30.5 2.6E+02 0.0057 21.8 8.5 99 176-274 16-124 (138)
21 TIGR02284 conserved hypothetic 30.4 2.8E+02 0.006 23.5 7.3 35 136-173 16-50 (139)
22 KOG0841 Multifunctional chaper 30.3 1.6E+02 0.0035 28.4 6.4 78 201-289 124-223 (247)
23 KOG0240 Kinesin (SMY1 subfamil 30.2 3.6E+02 0.0078 29.1 9.4 124 154-280 419-547 (607)
24 PF09537 DUF2383: Domain of un 30.1 93 0.002 24.4 4.1 75 222-297 4-80 (111)
25 KOG3251 Golgi SNAP receptor co 27.7 4E+02 0.0087 25.2 8.4 128 160-291 37-186 (213)
26 PF05757 PsbQ: Oxygen evolving 26.6 1.6E+02 0.0035 27.3 5.6 52 207-260 141-192 (202)
27 PF14943 MRP-S26: Mitochondria 26.4 1.6E+02 0.0034 26.5 5.3 65 116-184 69-134 (170)
28 PLN02956 PSII-Q subunit 26.3 3.9E+02 0.0084 24.9 7.9 71 187-260 106-176 (185)
29 cd07177 terB_like tellurium re 26.1 2.7E+02 0.0058 20.4 6.9 84 146-229 12-102 (104)
30 COG5040 BMH1 14-3-3 family pro 25.7 48 0.001 31.7 2.1 115 161-288 83-224 (268)
31 PF07200 Mod_r: Modifier of ru 25.3 3.8E+02 0.0083 22.3 7.2 93 179-276 9-106 (150)
32 cd09235 V_Alix Middle V-domain 24.3 6.4E+02 0.014 24.2 10.4 58 153-210 185-247 (339)
33 TIGR00634 recN DNA repair prot 24.0 7.9E+02 0.017 25.1 11.8 120 153-283 172-301 (563)
34 KOG2013 SMT3/SUMO-activating c 23.9 75 0.0016 33.8 3.2 33 199-234 95-127 (603)
35 cd08915 V_Alix_like Protein-in 22.9 6.5E+02 0.014 23.8 9.8 59 151-209 185-250 (342)
36 PF09675 Chlamy_scaf: Chlamydi 22.5 48 0.001 28.7 1.3 47 175-228 33-82 (114)
37 PF09371 Tex_N: Tex-like prote 22.1 93 0.002 28.2 3.1 13 191-203 26-38 (193)
38 PF12083 DUF3560: Domain of un 22.0 1.2E+02 0.0027 26.1 3.7 34 147-180 91-124 (126)
39 PF15605 Toxin_52: Putative to 21.8 1.6E+02 0.0036 25.1 4.3 52 196-249 39-98 (103)
40 TIGR02284 conserved hypothetic 20.9 2.1E+02 0.0045 24.2 4.8 72 223-295 4-77 (139)
41 PF13767 DUF4168: Domain of un 20.7 2.6E+02 0.0056 21.3 4.9 56 128-187 13-73 (78)
42 PF05739 SNARE: SNARE domain; 20.5 1.3E+02 0.0029 21.2 3.1 34 156-189 11-44 (63)
43 PF07988 LMSTEN: LMSTEN motif; 20.4 1E+02 0.0022 23.1 2.5 27 148-174 20-46 (48)
44 PF02320 UCR_hinge: Ubiquinol- 20.1 1.5E+02 0.0032 22.8 3.4 16 196-211 37-52 (65)
No 1
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=59.63 E-value=26 Score=24.45 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=36.1
Q ss_pred hhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcc
Q 022396 129 EDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTD 188 (298)
Q Consensus 129 ~EW~~iRp~Ff~RCq~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~d 188 (298)
.+|..++..++++|--.-..--...++.+|.++.+... +.-+.+.+..++.+|.|
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~~-----~~~~~~y~~~L~~d~~E 57 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRALG-----LPSFAEYYELLRSDPDE 57 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHT--------HHHHHHHHHH-T--
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHhCCCC
Confidence 57888999999999888888888888888887777766 66777788888777653
No 2
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.32 E-value=28 Score=29.96 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=13.6
Q ss_pred HHhhhhhhhhHHhHHHHHHhhh
Q 022396 235 VSAYDKTLEHVETLDSAQAKFD 256 (298)
Q Consensus 235 V~AYD~ate~~e~LdaA~~kf~ 256 (298)
.+--|...++.+.|++|..|++
T Consensus 95 lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 95 LQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4445556666666777776654
No 3
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=50.64 E-value=48 Score=32.25 Aligned_cols=57 Identities=33% Similarity=0.433 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc
Q 022396 154 MKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH 215 (298)
Q Consensus 154 ~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~ 215 (298)
...+++.++-+-|+=|.. ...+||+-|.+.=.+|..|=.++| ...||.||..+.|+.
T Consensus 84 ~qr~~L~~as~~kKP~~~--~~~~lL~Pl~~~i~~i~~~ke~nR---~s~~fNHLsavsEgi 140 (312)
T PF01213_consen 84 AQRKFLLVASKCKKPDQS--ELQELLKPLSEAIQKIQEFKEKNR---GSKFFNHLSAVSEGI 140 (312)
T ss_dssp HHHHHHHHHHHBE---HH--HHHHHCHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHCGG
T ss_pred HHHHHHHHHHccCCCChh--hHHHHHHHHHHHHHHHHHHHhccC---CCchHHHHHHHHHhh
Confidence 355678888888888877 556666666655445555544444 467999999999998
No 4
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=46.63 E-value=93 Score=25.79 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=32.5
Q ss_pred hhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHH
Q 022396 128 REDWNKYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEI 182 (298)
Q Consensus 128 S~EW~~iRp~Ff~RCq~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei 182 (298)
..||..+-.+||.+...+ ..||..+..|..+++ +|+ +|.+.|..+
T Consensus 26 ~~E~~ai~~Y~y~~~~~~---~~~~~~k~~f~~lA~------eE~-~H~~~l~~~ 70 (154)
T cd07908 26 NSELTAISQYIYQHLISE---EKYPEIAETFLGIAI------VEM-HHLEILGQL 70 (154)
T ss_pred chHHHHHHHHHHHHHHcc---CCCHHHHHHHHHHHH------HHH-HHHHHHHHH
Confidence 689999999999877654 368888777776664 455 666665554
No 5
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=46.39 E-value=71 Score=29.23 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=60.8
Q ss_pred HhHHHHHH--hhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC-Cc--chhHHHhhhccCCchhhHHHHHH
Q 022396 136 ESFYNRCR--TRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDS-PT--DINAVVARRRKDFTGEFFRYLSL 210 (298)
Q Consensus 136 p~Ff~RCq--~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~-p~--di~aIVArRRkDFT~EFF~hL~~ 210 (298)
|+|..++. .++...+||=--..|+++-.++.++.++|+...+-|+.+-.. |. ++..+-..+=.++.--|
T Consensus 40 ~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l~~~l~~~p~~i~i~~~~s~~P~~~~l~~------ 113 (217)
T PF08900_consen 40 PGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARLDALLAELPKGISISEIQSVQPVDVPLFF------ 113 (217)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccccccccCCCccceeEe------
Confidence 56777776 466778999999999999999999999999999988875555 65 44444333222221111
Q ss_pred HhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhh
Q 022396 211 VSETHDSLEDCDAVARLATRCLSAVSAYDKTLE 243 (298)
Q Consensus 211 l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate 243 (298)
-..+|-+|+-++..||...-
T Consensus 114 -------------~splGy~~v~LL~~yD~L~~ 133 (217)
T PF08900_consen 114 -------------RSPLGYRCVYLLVDYDQLAR 133 (217)
T ss_pred -------------cCHHHHHHHHHHHHHHHHHH
Confidence 12567777777777776543
No 6
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=45.73 E-value=1.3e+02 Score=22.85 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=36.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhh
Q 022396 145 RADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVAR 195 (298)
Q Consensus 145 RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVAr 195 (298)
+||-.-++..++.+.++.+++...+.+.+.--+++...+..+.++..+...
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQ 61 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHH
Confidence 577888999999999999998665556777777777666666555444333
No 7
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=45.35 E-value=1e+02 Score=24.75 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=38.8
Q ss_pred hhhhhhHHhHHHHHHhhhhhhCCc--cHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 022396 239 DKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLING 290 (298)
Q Consensus 239 D~ate~~e~LdaA~~kf~DILnSp--SLDaAc~KId~LAk~keLDsaLvLlisK 290 (298)
+....-+..|-.|-.++.+|++.. |..+..++|++|.+.--.+..-+.-|.+
T Consensus 54 ~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~l~~i~~ 107 (113)
T PF02520_consen 54 KNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVDTLFFIRK 107 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 444455566779999999999975 4789999999999887776555554444
No 8
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=43.33 E-value=86 Score=28.48 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred hhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhh-ccCCchhhHHHHHHHhhhcCChhhhH
Q 022396 144 TRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARR-RKDFTGEFFRYLSLVSETHDSLEDCD 222 (298)
Q Consensus 144 ~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVArR-RkDFT~EFF~hL~~l~ea~d~~~~rd 222 (298)
.+||-.-|...+++ +..+|.+..-+-+.+.-|-.++. .|.|+++|++.- -.+---|+|.--.++++ .|++.||.
T Consensus 90 AkADG~ID~~Er~~---I~~~l~~~g~d~e~~~~l~~eL~-~P~d~~~la~~v~~~e~A~evY~aS~laid-~d~~~Er~ 164 (188)
T PF04391_consen 90 AKADGHIDEEERQR---IEGALQELGLDAEERAWLQAELA-APLDPDALAAAVTDPEQAAEVYLASLLAID-VDTFAERA 164 (188)
T ss_pred HHcCCCCCHHHHHH---HHHHHHHhCCCHHHHHHHHHHHh-CCCCHHHHHHhCCCHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 56888899999998 55566664333334444555554 899999999877 23333444433333333 48888898
Q ss_pred HHHHHHHHH
Q 022396 223 AVARLATRC 231 (298)
Q Consensus 223 ~LArL~a~c 231 (298)
-|..|+..+
T Consensus 165 YL~~LA~aL 173 (188)
T PF04391_consen 165 YLDELAQAL 173 (188)
T ss_pred HHHHHHHHh
Confidence 888888654
No 9
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=41.83 E-value=1.5e+02 Score=26.12 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhh
Q 022396 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDIL 259 (298)
Q Consensus 207 hL~~l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DIL 259 (298)
-|+.+..+. -+++|.++-+|+......++.-|.|....+ --.|+..|+.+.
T Consensus 81 dl~~l~~sl-~p~dqk~a~~L~~~Lf~~L~~LD~AA~~kd-~~~a~k~Y~~av 131 (142)
T TIGR03042 81 EMTYLNQSL-LPKDQKEALALAKELKDDLEKLDEAARLQD-GPQAQKAYQKAA 131 (142)
T ss_pred HHHHHHHcc-CHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Confidence 455666665 488899999999999999999999988876 445555555543
No 10
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=40.59 E-value=2.1e+02 Score=25.02 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=43.6
Q ss_pred HHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHH---HHhhhc-
Q 022396 140 NRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLS---LVSETH- 215 (298)
Q Consensus 140 ~RCq~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~---~l~ea~- 215 (298)
.+.++-...-.|+.+..++.++.+-.+ .+++.++.+|.++..+ ..| |+.||- -+++.|
T Consensus 85 ~~i~~~~~~i~~~~~~~~~~~~~~~~~----------~I~~~v~~~P~~l~~a-----~~F---l~~yLp~~~~l~~kY~ 146 (199)
T PF10112_consen 85 RRIEKAIKRIRDLEMIEKVSRIEKIAR----------RIFKYVEKDPERLTQA-----RKF---LYYYLPTAVKLLEKYA 146 (199)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHHHHHHHCHHhHHHH-----HHH---HHHHhhHHHHHHHHHH
Confidence 444445555556665555555555554 4567777788776443 112 334544 455556
Q ss_pred -------CChhhhHHHHHHHHHHHHHHHhhhh
Q 022396 216 -------DSLEDCDAVARLATRCLSAVSAYDK 240 (298)
Q Consensus 216 -------d~~~~rd~LArL~a~cLaaV~AYD~ 240 (298)
.+++-++.+.+.....-...++|..
T Consensus 147 ~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~ 178 (199)
T PF10112_consen 147 ELESQPVKSEEIKQSLEEIEETLDTLNQAFEK 178 (199)
T ss_pred HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444444433
No 11
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=39.53 E-value=1.1e+02 Score=24.42 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=51.7
Q ss_pred hhhhccChHHHHHHHHHHHHhhh-hcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHH----HHHhhhc--CC
Q 022396 145 RADEESEPTMKEKLISLARKVKK-IDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYL----SLVSETH--DS 217 (298)
Q Consensus 145 RAd~E~DP~~K~kL~kL~RKLK~-IDeevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL----~~l~ea~--d~ 217 (298)
.||-+-+|..+..+..+.+..-. -+++++...+.+......+.++..++..-+..|+.+.-..+ .-++.|= -+
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~ 114 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADGEIS 114 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC-S
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCC
Confidence 47778888888888887754444 46777777778888888888888888777777775432222 2222111 33
Q ss_pred hhhhHHHHHHHHH
Q 022396 218 LEDCDAVARLATR 230 (298)
Q Consensus 218 ~~~rd~LArL~a~ 230 (298)
+.+++-|.+++..
T Consensus 115 ~~E~~~l~~ia~~ 127 (140)
T PF05099_consen 115 PEEQEFLRRIAEA 127 (140)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556666665543
No 12
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=38.11 E-value=1.8e+02 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=43.7
Q ss_pred hhhhccChHHHHHHHHHHHHhhhhc-HHHHHHHHHHHHHhcCCcchhHHHhhhccCCch
Q 022396 145 RADEESEPTMKEKLISLARKVKKID-DEMESHYELLKEIQDSPTDINAVVARRRKDFTG 202 (298)
Q Consensus 145 RAd~E~DP~~K~kL~kL~RKLK~ID-eevq~HneLL~ei~e~p~di~aIVArRRkDFT~ 202 (298)
++|-+-++..+..+..+.+..-.++ ++..+=-+......+.+.++..++..-+..|+.
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY 69 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH
Confidence 5788889999999999888865555 566666666777777788898888887777743
No 13
>TIGR03883 DUF2342_F420 uncharacterized protein, coenzyme F420 biosynthesis associated. protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.
Probab=35.36 E-value=1.2e+02 Score=30.05 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCCccchhhhhcchhh--------hhhhhHhHHHHHHhhhhh-ccChH-HHHHHHHHHHHhhhhcHHHHHHHHHHHHHhc
Q 022396 115 KPRVKQWRKYLVFRED--------WNKYRESFYNRCRTRADE-ESEPT-MKEKLISLARKVKKIDDEMESHYELLKEIQD 184 (298)
Q Consensus 115 Kp~pkDWRkLLaFS~E--------W~~iRp~Ff~RCq~RAd~-E~DP~-~K~kL~kL~RKLK~IDeevq~HneLL~ei~e 184 (298)
.-++.|.|-+|++++. =|=+|+|++....+-+.. ..|++ +..+|....|.+.. . .
T Consensus 153 ~v~~~d~rlwlalhE~aH~~~F~avPWLr~~l~~~ve~~a~~i~~d~~~~~~~l~~~~~~~~~---~------------~ 217 (346)
T TIGR03883 153 GVDPHDFRLWVCLHEVTHRVQFTAAPWLRDHLEGELEALLEALDEDVGDLVERLRRAVRSLRQ---G------------T 217 (346)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhccc---c------------C
Confidence 4478999999999883 233899999988877665 44544 23333333333221 0 0
Q ss_pred CCcchhHHHhhhccCCchhhHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhh
Q 022396 185 SPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLE 243 (298)
Q Consensus 185 ~p~di~aIVArRRkDFT~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate 243 (298)
.|++ .-+.+....++.|.++.+|- +.+|+||.|=...-
T Consensus 218 ~~~~--------------------~g~~~~~~tp~Q~aal~rLe-t~maLvEGwvd~Vm 255 (346)
T TIGR03883 218 RSGE--------------------TGLLELVQTPEQREALDRLQ-ALMTLLEGHADHVM 255 (346)
T ss_pred CCCc--------------------ccccccCCCHHHHHHHHHHH-HHHHHHhhHHHHHH
Confidence 1111 12345557789999999996 56899999965443
No 14
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=34.94 E-value=86 Score=27.10 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=31.1
Q ss_pred hhhhhhHHhHHHHHHhhhhhhCCccHHHHHHH--HHHHHH--hCCCChHH
Q 022396 239 DKTLEHVETLDSAQAKFDDILNSPSVDVACEK--IKSLAK--AKELDSSL 284 (298)
Q Consensus 239 D~ate~~e~LdaA~~kf~DILnSpSLDaAc~K--Id~LAk--~keLDsaL 284 (298)
+...++...+...-.++.++|.+|++....++ |+++.+ ++.+|+.+
T Consensus 25 ~~v~~~l~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~ 74 (180)
T PRK13441 25 EEYGEFLDLVCQIYESAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFF 74 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHH
Confidence 33444444455554556899999999988776 888765 45688654
No 15
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.47 E-value=1.6e+02 Score=28.67 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhH
Q 022396 170 DEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH-DSLEDCDAVARLATRCLSAVSAYDKTLEHVETL 248 (298)
Q Consensus 170 eevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~-d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~L 248 (298)
+-...|.+-|+.+.+.+++..+|.=..|.-. | +++..+ ..-++...-..|+.+---|++---.+-+..+..
T Consensus 113 eA~skY~~Ale~cp~~~~e~rsIly~Nraaa----~----iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 113 EANSKYQEALESCPSTSTEERSILYSNRAAA----L----IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred HHHHHHHHHHHhCccccHHHHHHHHhhhHHH----H----HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 4467899999999999999999887666421 1 111111 011112222223333222333223344566888
Q ss_pred HHHHHhhhhhhCC-ccHHHHHHHHHHH
Q 022396 249 DSAQAKFDDILNS-PSVDVACEKIKSL 274 (298)
Q Consensus 249 daA~~kf~DILnS-pSLDaAc~KId~L 274 (298)
+.|-.-|..|+.+ ||.++|.++|-.|
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8999999999999 9999999988766
No 16
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=34.22 E-value=8.8 Score=37.33 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=15.0
Q ss_pred hhhhHhHHHHHHhhhhh
Q 022396 132 NKYRESFYNRCRTRADE 148 (298)
Q Consensus 132 ~~iRp~Ff~RCq~RAd~ 148 (298)
-++|||||.|||=....
T Consensus 134 GRlRP~Fl~vC~P~~~~ 150 (317)
T KOG3030|consen 134 GRLRPHFLDVCQPDGTD 150 (317)
T ss_pred cCCCCCeeccccCCccC
Confidence 47899999999988876
No 17
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=33.97 E-value=61 Score=23.68 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=29.9
Q ss_pred hhhhhhHhHHHHHHh-----hhhhccChHHHHHHHHHHHHhhhhcH
Q 022396 130 DWNKYRESFYNRCRT-----RADEESEPTMKEKLISLARKVKKIDD 170 (298)
Q Consensus 130 EW~~iRp~Ff~RCq~-----RAd~E~DP~~K~kL~kL~RKLK~IDe 170 (298)
+-..+...||.+|+. +...+.+-..|..|+.=++.|....+
T Consensus 6 ~F~~a~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d 51 (77)
T PF03993_consen 6 RFRAACDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345567788888875 45557788888888877777777665
No 18
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=33.87 E-value=1.1e+02 Score=28.33 Aligned_cols=64 Identities=20% Similarity=0.251 Sum_probs=48.0
Q ss_pred hHHHHHHHhhh-c-CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCC-ccHHHHH
Q 022396 204 FFRYLSLVSET-H-DSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNS-PSVDVAC 268 (298)
Q Consensus 204 FF~hL~~l~ea-~-d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DILnS-pSLDaAc 268 (298)
||+|.+-..++ | .||.+=|.|.+-|-.+|-.-+. -...+..+-++.|..||+..|.- |..-+|.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqf-k~g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQF-KQGPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 89999999988 4 8899999999988888776553 44456778899999999998876 7655554
No 19
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=33.01 E-value=4.1e+02 Score=25.42 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC--Ccch-hHHHhhhccCCchhhHHHHH
Q 022396 153 TMKEKLISLARKVKKIDDEMESHYELLKEIQDS--PTDI-NAVVARRRKDFTGEFFRYLS 209 (298)
Q Consensus 153 ~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~--p~di-~aIVArRRkDFT~EFF~hL~ 209 (298)
.....+.+|...|.+|++=-.+-..+++++++. ..|| ..|+...+.+|..=|-+||.
T Consensus 185 ~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~eL~ 244 (337)
T cd09234 185 EDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTTGGDMEDLFKEELK 244 (337)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhcchhHHHHHHHHHH
Confidence 334456667777777777777788888888655 5688 77777775688665556663
No 20
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=30.53 E-value=2.6e+02 Score=21.76 Aligned_cols=99 Identities=9% Similarity=0.109 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc--------CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHh
Q 022396 176 YELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH--------DSLEDCDAVARLATRCLSAVSAYDKTLEHVET 247 (298)
Q Consensus 176 neLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~--------d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~ 247 (298)
+.+...+.+..+.+-+.+-.....|-.+|.+...-+...+ ++|+.+..|..+....-.-++..|....-...
T Consensus 16 ~~l~~~l~~~e~~~RgYlltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~ 95 (138)
T PF05227_consen 16 EQLESALLDQESALRGYLLTGDPEFLEPYQEARARLEKALAQLRQLVQDNPEQQERLDQLEELIDQWRELLEPQIALRKS 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG
T ss_pred HHHHHHHHHHHHHhhHHHHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555666777787777888777777655554444 89999999999988877777777766665544
Q ss_pred --HHHHHHhhhhhhCCccHHHHHHHHHHH
Q 022396 248 --LDSAQAKFDDILNSPSVDVACEKIKSL 274 (298)
Q Consensus 248 --LdaA~~kf~DILnSpSLDaAc~KId~L 274 (298)
.++|...+...-...-+|..-..|+.+
T Consensus 96 ~~~~~a~~~~~~~~~~~~~~~i~~~~~~~ 124 (138)
T PF05227_consen 96 GGMEAARALVNSGEGKQLMDQIRQLLEQI 124 (138)
T ss_dssp -GHHHHHHHHHHHGGG-HHHHHHHHHHHH
T ss_pred cChHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 667777776655555455555555544
No 21
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=30.37 E-value=2.8e+02 Score=23.47 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=23.0
Q ss_pred HhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHH
Q 022396 136 ESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEME 173 (298)
Q Consensus 136 p~Ff~RCq~RAd~E~DP~~K~kL~kL~RKLK~IDeevq 173 (298)
-.+|++|-+++ .||..|.-+.+.+..=...=.+++
T Consensus 16 ~~gY~~aae~v---~~~~lk~~f~~~~~~~~~~~~eL~ 50 (139)
T TIGR02284 16 KDGFEESAEEV---KDPELATLFRRIAGEKSAIVSELQ 50 (139)
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877 778888877666655444333333
No 22
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=1.6e+02 Score=28.41 Aligned_cols=78 Identities=28% Similarity=0.480 Sum_probs=43.2
Q ss_pred chhhHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHH-------------hHHHHHHhhhhhhCCcc----
Q 022396 201 TGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVE-------------TLDSAQAKFDDILNSPS---- 263 (298)
Q Consensus 201 T~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate~~e-------------~LdaA~~kf~DILnSpS---- 263 (298)
.|++|+|+-.+. .+.++.+ .+. ...+||-++++-.. +|+-+ .-|.+|+|||-
T Consensus 124 Kgdy~rylae~~---sg~erke-~~~------~sl~aYk~a~~ia~~~l~PthPirLgLaLnfS-vf~yeilnsPe~ac~ 192 (247)
T KOG0841|consen 124 KGDYYRYLAEFA---SGDERKE-AAD------QSLEAYKEASEIAKAELQPTHPIRLGLALNFS-VFYYEILNSPERACS 192 (247)
T ss_pred cchhHHHHHHhc---chhHHHH-HHH------HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-HHHHHHHcChHHHHH
Confidence 367777776655 3444433 332 24556666665544 23333 33489999994
Q ss_pred -----HHHHHHHHHHHHHhCCCChHHHHHHH
Q 022396 264 -----VDVACEKIKSLAKAKELDSSLILLIN 289 (298)
Q Consensus 264 -----LDaAc~KId~LAk~keLDsaLvLlis 289 (298)
.|+|..-.|.|.+..=-||+||....
T Consensus 193 lak~a~d~ai~eldtl~e~sykdStlimqll 223 (247)
T KOG0841|consen 193 LAKQAFDEAIAELDTLSEESYKDSTLIMQLL 223 (247)
T ss_pred HHHHHHHHHHHhhccccHHHHhhhHHHHHHH
Confidence 24444444455555556777765543
No 23
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=30.20 E-value=3.6e+02 Score=29.14 Aligned_cols=124 Identities=18% Similarity=0.236 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhcCChhhhHHHHHHHHHHHH
Q 022396 154 MKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLS 233 (298)
Q Consensus 154 ~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLa 233 (298)
....+-+|.+.+-.-|++|.+...|.++++..-.+=++..+.-|++.+.- |+++..+.+ + .....+.....-+..=.
T Consensus 419 ~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~-q~e~~~~Q~-~-~e~~~~e~~e~~~al~e 495 (607)
T KOG0240|consen 419 LTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDI-QQELSEIQE-E-NEAAKDEVKEVLTALEE 495 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999999988666666667667766654 566777666 3 33333346666677777
Q ss_pred HHHhhhhhhhhHHh-----HHHHHHhhhhhhCCccHHHHHHHHHHHHHhCCC
Q 022396 234 AVSAYDKTLEHVET-----LDSAQAKFDDILNSPSVDVACEKIKSLAKAKEL 280 (298)
Q Consensus 234 aV~AYD~ate~~e~-----LdaA~~kf~DILnSpSLDaAc~KId~LAk~keL 280 (298)
.+.+||..++.++. +..+-...+...++++.-..---+..+...|++
T Consensus 496 l~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~ 547 (607)
T KOG0240|consen 496 LAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELRKDLGEI 547 (607)
T ss_pred HHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHHhhhccc
Confidence 88999999988762 344555666777777655444444444444443
No 24
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=30.06 E-value=93 Score=24.37 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCCc--cHHHHHHHHHHHHHhCCCChHHHHHHHHhhhhhcC
Q 022396 222 DAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNSP--SVDVACEKIKSLAKAKELDSSLILLINGQRHNVLS 297 (298)
Q Consensus 222 d~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DILnSp--SLDaAc~KId~LAk~keLDsaLvLlisKAwaAa~~ 297 (298)
+.|-.|-..|-.+++.|+.+.+..+. ..-...|.++.+.- -.++.-..|..|-..-.=++++.-.+.++|+..-+
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~ 80 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKAED-PELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKS 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHH
Confidence 46777888999999999999999874 44456677776652 13333344444444444445899999999987643
No 25
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.69 E-value=4e+02 Score=25.22 Aligned_cols=128 Identities=22% Similarity=0.231 Sum_probs=92.6
Q ss_pred HHHHHhhhhcHHHHHHHHHHHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc-CChhhhHHHHHHHHHHHH-----
Q 022396 160 SLARKVKKIDDEMESHYELLKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH-DSLEDCDAVARLATRCLS----- 233 (298)
Q Consensus 160 kL~RKLK~IDeevq~HneLL~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~-d~~~~rd~LArL~a~cLa----- 233 (298)
.+-+.+.+++..+++...++....-. .-.-+++|-|=-++=|.||..=+..+ +--++|+.+++-....|.
T Consensus 37 ~i~~sI~~~~s~~~rl~~~~~~epp~----~rq~~rlr~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~~~ 112 (213)
T KOG3251|consen 37 SIQRSIDQYASRCQRLDVLVSKEPPK----SRQAARLRVDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRFTN 112 (213)
T ss_pred HHHHhHHHHHHHHHHHHhHhhcCCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCC
Confidence 46677777777777777665443322 23456677777788889999888887 455567777776655552
Q ss_pred ---HHHh-hhhhhhhHHhHHHHHHhhhhhhCCcc------------HHHHHHHHHHHHHhCCCChHHHHHHHHh
Q 022396 234 ---AVSA-YDKTLEHVETLDSAQAKFDDILNSPS------------VDVACEKIKSLAKAKELDSSLILLINGQ 291 (298)
Q Consensus 234 ---aV~A-YD~ate~~e~LdaA~~kf~DILnSpS------------LDaAc~KId~LAk~keLDsaLvLlisKA 291 (298)
.++- ||.-+...+.+..+..-.+|+|.+.+ |-.+-+||-+.+..=-|.-+.|=+|.|-
T Consensus 113 ~~~~~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR 186 (213)
T KOG3251|consen 113 GATGTSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERR 186 (213)
T ss_pred CCccCCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3334 88888888889999999999988865 6678888888888888888888888764
No 26
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=26.65 E-value=1.6e+02 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhC
Q 022396 207 YLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILN 260 (298)
Q Consensus 207 hL~~l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DILn 260 (298)
-|+.++.+. ..++|.++.+|++..+..++..|.+..+-. ...|+.-|.|.+.
T Consensus 141 DL~~liss~-p~~~kk~l~~La~~lf~~ie~LD~Aar~K~-~~~a~~~Y~~t~~ 192 (202)
T PF05757_consen 141 DLNTLISSK-PKDEKKALTDLANKLFDNIEELDYAARSKD-VPEAEKYYADTVK 192 (202)
T ss_dssp HHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 355555554 368899999999999999999999998887 6677777777654
No 27
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=26.44 E-value=1.6e+02 Score=26.50 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=46.7
Q ss_pred CCccchhhhhcchhhhh-hhhHhHHHHHHhhhhhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhc
Q 022396 116 PRVKQWRKYLVFREDWN-KYRESFYNRCRTRADEESEPTMKEKLISLARKVKKIDDEMESHYELLKEIQD 184 (298)
Q Consensus 116 p~pkDWRkLLaFS~EW~-~iRp~Ff~RCq~RAd~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e 184 (298)
-...+|+.+++...+|+ .+..---.|.+.-+. -.....|.++.++.++-.+.++++.+-...+++
T Consensus 69 ~ee~E~~~l~a~N~~~N~~~~~~Re~Rl~~e~e----~~~~~~l~~~~~~~~~~~~~~~~~e~~V~~~~e 134 (170)
T PF14943_consen 69 EEEEEHRRLMAWNEEWNAEIAELREERLAKERE----EREEEILERLERKEEEEEERKERKEEEVRQLKE 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999 566555555554433 334566778888888888888888876665554
No 28
>PLN02956 PSII-Q subunit
Probab=26.30 E-value=3.9e+02 Score=24.87 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=52.8
Q ss_pred cchhHHHhhhccCCchhhHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhC
Q 022396 187 TDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILN 260 (298)
Q Consensus 187 ~di~aIVArRRkDFT~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DILn 260 (298)
.+|..+-.--|.-.+ +-.+-|+++..+. -+++|.++-+|++.+...++--|.|..... .-.|+..|++++.
T Consensus 106 ~~W~yvrn~LRgp~s-~Lr~DL~~Ii~sl-pp~Drk~a~~La~~LFd~l~~LD~AAR~kd-~~~a~k~Y~~tva 176 (185)
T PLN02956 106 ESWKEAQKALRRSAS-NLKQDLYAIIQAK-PGKDRPQLRRLYSDLFNSVTKLDYAARDKD-ETRVWEYYENIVA 176 (185)
T ss_pred ccHHHHHHHHHccHH-HHHHHHHHHHHhc-CHhHhHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 466555444444433 3455677777777 488999999999999999999999998887 6667777877764
No 29
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=26.07 E-value=2.7e+02 Score=20.43 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=48.4
Q ss_pred hhhccChHHHHHHHHHHHHhhhh-cHHHHHHHHHHHHHhc---CCcchhHHHhhhcc-CCchhhHHHHHHHhhhc--CCh
Q 022396 146 ADEESEPTMKEKLISLARKVKKI-DDEMESHYELLKEIQD---SPTDINAVVARRRK-DFTGEFFRYLSLVSETH--DSL 218 (298)
Q Consensus 146 Ad~E~DP~~K~kL~kL~RKLK~I-Deevq~HneLL~ei~e---~p~di~aIVArRRk-DFT~EFF~hL~~l~ea~--d~~ 218 (298)
||-+-+|..++.+..+.+.+-.. +.+.++-.+++..... .+..+..+...... +=-..+++.+.-++.+= =++
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~aDG~~~~ 91 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAEAGDLAALAALLKELPDAELREALLAALWEVALADGELDP 91 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCCH
Confidence 68889999999999888887653 2344555555555554 33344444432221 12224555555555554 344
Q ss_pred hhhHHHHHHHH
Q 022396 219 EDCDAVARLAT 229 (298)
Q Consensus 219 ~~rd~LArL~a 229 (298)
.++.-|.+++.
T Consensus 92 ~E~~~l~~l~~ 102 (104)
T cd07177 92 EERALLRRLAD 102 (104)
T ss_pred HHHHHHHHHHh
Confidence 56666666654
No 30
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=25.69 E-value=48 Score=31.75 Aligned_cols=115 Identities=28% Similarity=0.416 Sum_probs=68.1
Q ss_pred HHHHhhhhcHHHHHHH-HHHHHHhcC--C--cchhHHHhhhccCCchhhHHHHHHHhhhcCChhhhHHHHHHHHHHHHHH
Q 022396 161 LARKVKKIDDEMESHY-ELLKEIQDS--P--TDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSAV 235 (298)
Q Consensus 161 L~RKLK~IDeevq~Hn-eLL~ei~e~--p--~di~aIVArRRkDFT~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLaaV 235 (298)
+-.+-|+|.+|+.+-. ++|..+... | +.++.=|== --.-|+|++| ++|-.-++.+.+. + =++.
T Consensus 83 I~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFy--yKMKGDYyRY---lAEf~~G~~~~e~-a------~~sl 150 (268)
T COG5040 83 IKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFY--YKMKGDYYRY---LAEFSVGEAREEA-A------DSSL 150 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEE--EeecchHHHH---HHHhccchHhHHH-H------HhHH
Confidence 3456677888877753 455555433 2 111111100 0113555555 4555555555442 2 2478
Q ss_pred HhhhhhhhhHHh---------HHHHHHh----hhhhhCCcc---------HHHHHHHHHHHHHhCCCChHHHHHH
Q 022396 236 SAYDKTLEHVET---------LDSAQAK----FDDILNSPS---------VDVACEKIKSLAKAKELDSSLILLI 288 (298)
Q Consensus 236 ~AYD~ate~~e~---------LdaA~~k----f~DILnSpS---------LDaAc~KId~LAk~keLDsaLvLli 288 (298)
|+|-.+++---+ |-- +++ |.+|||||. .|+|...+|.|.+..-=||+||.-+
T Consensus 151 E~YK~AseiA~teLpPT~PirLGL-ALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQL 224 (268)
T COG5040 151 EAYKAASEIATTELPPTHPIRLGL-ALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQL 224 (268)
T ss_pred HHHHHHHHHhhccCCCCCchhhhh-eecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 899888764432 111 233 469999996 6888889999999999999998654
No 31
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.34 E-value=3.8e+02 Score=22.25 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHhcCCcchhHHHhhhccCCchhhHHHHHHHhhhc-----CChhhhHHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 022396 179 LKEIQDSPTDINAVVARRRKDFTGEFFRYLSLVSETH-----DSLEDCDAVARLATRCLSAVSAYDKTLEHVETLDSAQA 253 (298)
Q Consensus 179 L~ei~e~p~di~aIVArRRkDFT~EFF~hL~~l~ea~-----d~~~~rd~LArL~a~cLaaV~AYD~ate~~e~LdaA~~ 253 (298)
|.++-.+|..++++|..- +...++.....-+..+. .+++.+..|..+.+.+-.. |+....-.+..+.-..
T Consensus 9 L~~Ll~d~~~l~~~v~~l--~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~---~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 9 LQELLSDEEKLDAFVKSL--PQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQEL---YEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHH-HHHHHHGGGG--S--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344555666677777642 22444444444444444 4555566666666666543 3443344444445556
Q ss_pred hhhhhhCCccHHHHHHHHHHHHH
Q 022396 254 KFDDILNSPSVDVACEKIKSLAK 276 (298)
Q Consensus 254 kf~DILnSpSLDaAc~KId~LAk 276 (298)
.++.+...-|.+....++...+.
T Consensus 84 ~~~~l~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 84 QQDELSSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHH
Confidence 77777777777766666655544
No 32
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=24.28 E-value=6.4e+02 Score=24.21 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcch-hHHHhh--hccCC--chhhHHHHHH
Q 022396 153 TMKEKLISLARKVKKIDDEMESHYELLKEIQDSPTDI-NAVVAR--RRKDF--TGEFFRYLSL 210 (298)
Q Consensus 153 ~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di-~aIVAr--RRkDF--T~EFF~hL~~ 210 (298)
.....+..|...|.+|+.=-.+-..+++++++...|| ..|++. ..+.| ..=|.+||.-
T Consensus 185 ~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL~k 247 (339)
T cd09235 185 QGSEAVQELRQLMEQVETIKAEREVIESELKSATFDMKSKFLSALAQDGAINEEAISVEELDR 247 (339)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCccHHHhhHHHHHH
Confidence 3455566777777777777777777899999998888 677743 34444 4446777743
No 33
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.02 E-value=7.9e+02 Score=25.15 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC---CcchhHHHhhhccCCchhhHHHHHHHhhhcCChhhh------HH
Q 022396 153 TMKEKLISLARKVKKIDDEMESHYELLKEIQDS---PTDINAVVARRRKDFTGEFFRYLSLVSETHDSLEDC------DA 223 (298)
Q Consensus 153 ~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~---p~di~aIVArRRkDFT~EFF~hL~~l~ea~d~~~~r------d~ 223 (298)
..+.+|-++.++-++...+++.-..-+++|++. |.+.+.+-+.+++==..+ .-...+..++..++.. ..
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e--~i~~~~~~~~~~L~~~~~~~~~~~ 249 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLE--KLRELSQNALAALRGDVDVQEGSL 249 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHH--HHHHHHHHHHHHHhCCccccccCH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhH-HhHHHHHHhhhhhhCCccHHHHHHHHHHHHHhCCCChH
Q 022396 224 VARLATRCLSAVSAYDKTLEHV-ETLDSAQAKFDDILNSPSVDVACEKIKSLAKAKELDSS 283 (298)
Q Consensus 224 LArL~a~cLaaV~AYD~ate~~-e~LdaA~~kf~DILnSpSLDaAc~KId~LAk~keLDsa 283 (298)
+..|+...-.+-+.||..++.. +.++.|... ++++...+.+.+..=++||.
T Consensus 250 ~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~---------l~d~~~~l~~~~~~l~~dp~ 301 (563)
T TIGR00634 250 LEGLGEAQLALASVIDGSLRELAEQVGNALTE---------VEEATRELQNYLDELEFDPE 301 (563)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCCCHH
No 34
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=75 Score=33.81 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=28.6
Q ss_pred CCchhhHHHHHHHhhhcCChhhhHHHHHHHHHHHHH
Q 022396 199 DFTGEFFRYLSLVSETHDSLEDCDAVARLATRCLSA 234 (298)
Q Consensus 199 DFT~EFF~hL~~l~ea~d~~~~rd~LArL~a~cLaa 234 (298)
+|..+||+...++.+++||.+.|.-. ...|++|
T Consensus 95 ~fnv~ff~qfdiV~NaLDNlaAR~yV---Nr~C~~a 127 (603)
T KOG2013|consen 95 KFNVEFFRQFDIVLNALDNLAARRYV---NRMCLAA 127 (603)
T ss_pred chHHHHHHHHHHHHHhhccHHHHHHH---HHHHHhh
Confidence 69999999999999999999999854 5568876
No 35
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=22.90 E-value=6.5e+02 Score=23.80 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHhcC--Ccch-hHHHhhhcc----CCchhhHHHHH
Q 022396 151 EPTMKEKLISLARKVKKIDDEMESHYELLKEIQDS--PTDI-NAVVARRRK----DFTGEFFRYLS 209 (298)
Q Consensus 151 DP~~K~kL~kL~RKLK~IDeevq~HneLL~ei~e~--p~di-~aIVArRRk----DFT~EFF~hL~ 209 (298)
+|.....+..|-..|.+++.=-++-..+++++++. ..|| ..|+...++ +|..=|-+||.
T Consensus 185 ~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~ 250 (342)
T cd08915 185 DPEVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLK 250 (342)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHH
Confidence 44556677778888888888888888888998655 6688 677777754 68666666763
No 36
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=22.50 E-value=48 Score=28.65 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCcchhHHHhhhccCCch---hhHHHHHHHhhhcCChhhhHHHHHHH
Q 022396 175 HYELLKEIQDSPTDINAVVARRRKDFTG---EFFRYLSLVSETHDSLEDCDAVARLA 228 (298)
Q Consensus 175 HneLL~ei~e~p~di~aIVArRRkDFT~---EFF~hL~~l~ea~d~~~~rd~LArL~ 228 (298)
|.+-|..|.+.-.-.+++=|.-|+.|.. |||+++ ++++-++++++||
T Consensus 33 yqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~-------~dp~N~ee~~~Lg 82 (114)
T PF09675_consen 33 YQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFL-------NDPKNYEEAIKLG 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHH-------hCccCHHHHHHhc
Confidence 4445555555544556777788888875 888865 5888899999998
No 37
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=22.09 E-value=93 Score=28.23 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=10.8
Q ss_pred HHHhhhccCCchh
Q 022396 191 AVVARRRKDFTGE 203 (298)
Q Consensus 191 aIVArRRkDFT~E 203 (298)
-|+||+||+-||.
T Consensus 26 PFIARYRKe~TG~ 38 (193)
T PF09371_consen 26 PFIARYRKEMTGG 38 (193)
T ss_dssp HHHHHH-HHHHTS
T ss_pred chhhhhhhhhhCC
Confidence 5899999999996
No 38
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=22.02 E-value=1.2e+02 Score=26.13 Aligned_cols=34 Identities=6% Similarity=0.188 Sum_probs=30.8
Q ss_pred hhccChHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q 022396 147 DEESEPTMKEKLISLARKVKKIDDEMESHYELLK 180 (298)
Q Consensus 147 d~E~DP~~K~kL~kL~RKLK~IDeevq~HneLL~ 180 (298)
...+||+...+|-++.-.++...+.|..+|..|.
T Consensus 91 i~~~~Pda~~ri~~~la~~r~~q~~mk~~nk~~r 124 (126)
T PF12083_consen 91 ISSDDPDALRRIKKKLAELRASQRRMKAANKAIR 124 (126)
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999998874
No 39
>PF15605 Toxin_52: Putative toxin 52
Probab=21.83 E-value=1.6e+02 Score=25.07 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=31.2
Q ss_pred hccCCchhhHHHHHHHhhhcCChhh-hHHHHH-HHH------HHHHHHHhhhhhhhhHHhHH
Q 022396 196 RRKDFTGEFFRYLSLVSETHDSLED-CDAVAR-LAT------RCLSAVSAYDKTLEHVETLD 249 (298)
Q Consensus 196 RRkDFT~EFF~hL~~l~ea~d~~~~-rd~LAr-L~a------~cLaaV~AYD~ate~~e~Ld 249 (298)
++++ |-+|.||.-+.+||.++.. +..|-+ |++ .--.+-.+|++|.-.+..++
T Consensus 39 pKp~--GgywdHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE 98 (103)
T PF15605_consen 39 PKPD--GGYWDHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIE 98 (103)
T ss_pred cCCC--CCccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 9999999999999966654 333433 221 11223445666655555444
No 40
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=20.93 E-value=2.1e+02 Score=24.20 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhhhhhCC--ccHHHHHHHHHHHHHhCCCChHHHHHHHHhhhhh
Q 022396 223 AVARLATRCLSAVSAYDKTLEHVETLDSAQAKFDDILNS--PSVDVACEKIKSLAKAKELDSSLILLINGQRHNV 295 (298)
Q Consensus 223 ~LArL~a~cLaaV~AYD~ate~~e~LdaA~~kf~DILnS--pSLDaAc~KId~LAk~keLDsaLvLlisKAwaAa 295 (298)
.|-.|=..|..++++|+.+.++.+.- .-...|+++-.- --..+.-..|..|-..-+=+++++-.+.++|++.
T Consensus 4 ~Ln~Lie~~~D~~~gY~~aae~v~~~-~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~l 77 (139)
T TIGR02284 4 SLNDLIEISIDGKDGFEESAEEVKDP-ELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKI 77 (139)
T ss_pred HHHHHHHHcccHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 45566777888999999999988643 235567766554 2244445555555545556889999999999943
No 41
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=20.73 E-value=2.6e+02 Score=21.30 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=35.8
Q ss_pred hhhhhhhhHhHHHHHHhhhhhccChHHHHHHHHHH-----HHhhhhcHHHHHHHHHHHHHhcCCc
Q 022396 128 REDWNKYRESFYNRCRTRADEESEPTMKEKLISLA-----RKVKKIDDEMESHYELLKEIQDSPT 187 (298)
Q Consensus 128 S~EW~~iRp~Ff~RCq~RAd~E~DP~~K~kL~kL~-----RKLK~IDeevq~HneLL~ei~e~p~ 187 (298)
..+-..+|..+|.+.+. ..||.....|-.=+ ..+++=.=.+++||+++..++.+|.
T Consensus 13 ~~~ie~ir~~~~~~l~~----~~~~~~~~~l~~~a~~~~~~~I~~~GLtv~~fN~I~~~~q~Dp~ 73 (78)
T PF13767_consen 13 VLEIEPIRQEYQQELQA----AEDPEEIQELQEEAQEEMVEAIEENGLTVERFNEITQAAQSDPE 73 (78)
T ss_pred HHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCHH
Confidence 44567789999998887 55676666653322 1222222247888888888888774
No 42
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.47 E-value=1.3e+02 Score=21.20 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHhcCCcch
Q 022396 156 EKLISLARKVKKIDDEMESHYELLKEIQDSPTDI 189 (298)
Q Consensus 156 ~kL~kL~RKLK~IDeevq~HneLL~ei~e~p~di 189 (298)
..+..|..-...|.++|+.++++|..|..+=...
T Consensus 11 ~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 44 (63)
T PF05739_consen 11 QSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHH
Confidence 4556677777888999999999999998764433
No 43
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=20.41 E-value=1e+02 Score=23.08 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=17.8
Q ss_pred hccChHHHHHHHHHHHHhhhhcHHHHH
Q 022396 148 EESEPTMKEKLISLARKVKKIDDEMES 174 (298)
Q Consensus 148 ~E~DP~~K~kL~kL~RKLK~IDeevq~ 174 (298)
.++||++..|+..|---|+....||.|
T Consensus 20 ~dddpdkekrikelelllms~enev~~ 46 (48)
T PF07988_consen 20 IDDDPDKEKRIKELELLLMSAENEVRR 46 (48)
T ss_dssp -------HHHHHHHHHHHHCHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHhhHHHHhc
Confidence 368999999999999999988888876
No 44
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=20.06 E-value=1.5e+02 Score=22.84 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=13.2
Q ss_pred hccCCchhhHHHHHHH
Q 022396 196 RRKDFTGEFFRYLSLV 211 (298)
Q Consensus 196 RRkDFT~EFF~hL~~l 211 (298)
-..+.++|||.+++.+
T Consensus 37 ~~e~C~ee~fd~~hCv 52 (65)
T PF02320_consen 37 TKEDCVEEYFDLVHCV 52 (65)
T ss_dssp SSG-SHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 5689999999999876
Done!