Query 022397
Match_columns 298
No_of_seqs 163 out of 1493
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 8.6E-90 1.9E-94 600.2 26.1 295 1-298 26-321 (321)
2 KOG0819 Annexin [Intracellular 100.0 3.2E-51 6.9E-56 358.0 16.0 211 1-221 98-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 8.9E-17 1.9E-21 112.4 8.2 66 228-293 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 9.6E-17 2.1E-21 112.3 7.8 66 67-135 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 2.4E-15 5.3E-20 100.4 6.0 53 8-60 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 3.2E-13 6.9E-18 90.1 5.9 53 241-293 1-53 (53)
7 PF13766 ECH_C: 2-enoyl-CoA Hy 67.0 18 0.00039 27.9 5.6 48 171-218 35-90 (118)
8 COG5173 SEC6 Exocyst complex s 59.4 1.9E+02 0.0041 28.7 11.7 78 85-168 292-370 (742)
9 COG5173 SEC6 Exocyst complex s 45.2 1.4E+02 0.0029 29.6 8.4 181 16-218 298-495 (742)
10 PF14003 YlbE: YlbE-like prote 38.7 75 0.0016 21.8 4.2 37 89-125 13-49 (65)
11 PF11159 DUF2939: Protein of u 36.5 72 0.0016 23.3 4.3 51 220-278 7-57 (95)
12 PF13720 Acetyltransf_11: Udp 33.8 36 0.00077 24.5 2.2 21 20-40 27-47 (83)
13 KOG0859 Synaptobrevin/VAMP-lik 33.5 1.9E+02 0.004 24.6 6.5 65 97-162 76-141 (217)
14 PF14003 YlbE: YlbE-like prote 32.7 52 0.0011 22.5 2.7 43 251-293 17-60 (65)
15 PF08587 UBA_2: Ubiquitin asso 32.6 12 0.00026 23.8 -0.4 31 5-35 11-42 (46)
16 KOG2875 8-oxoguanine DNA glyco 28.6 4.4E+02 0.0096 23.8 12.2 115 174-295 165-286 (323)
17 KOG0859 Synaptobrevin/VAMP-lik 28.0 1.6E+02 0.0034 25.0 5.3 48 180-227 76-123 (217)
18 PF01992 vATP-synt_AC39: ATP s 26.6 4.7E+02 0.01 23.4 9.7 48 227-276 172-220 (337)
19 PRK10969 DNA polymerase III su 24.0 1.7E+02 0.0037 20.6 4.0 36 256-291 17-53 (75)
20 KOG2286 Exocyst complex subuni 23.7 7.4E+02 0.016 25.3 10.0 193 85-297 249-450 (667)
21 KOG0031 Myosin regulatory ligh 23.6 4.1E+02 0.0089 21.7 10.6 66 16-90 21-87 (171)
22 PF15595 Imm31: Immunity prote 23.5 2.3E+02 0.0051 21.3 5.2 60 181-257 39-106 (107)
23 PF11757 RSS_P20: Suppressor o 21.9 4.1E+02 0.0089 21.1 6.7 98 25-132 11-115 (137)
24 PF07208 DUF1414: Protein of u 21.6 2.2E+02 0.0048 17.9 3.8 25 13-37 15-40 (44)
25 PF13043 DUF3903: Domain of un 20.3 91 0.002 18.6 1.8 18 258-275 9-26 (40)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-90 Score=600.22 Aligned_cols=295 Identities=39% Similarity=0.594 Sum_probs=289.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCHHHHHHHHHHHHhhhchhHHHHhhhcccccHHHHHHHhccCcHHHHHHHHHHHhccCC
Q 022397 1 MNLYAGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWTLDPAERDAKMAKEALKKSK 80 (298)
Q Consensus 1 ~~A~~g~Gtde~~li~il~~rs~~q~~~I~~~Y~~~~~~~L~~~l~~~~sG~~~~ll~~l~~~~~~~da~~l~~A~~g~~ 80 (298)
++||+||||||++||+||++|||+|||+|+++|+.+||++|.++|++|+||+|++++++|+.+|+++||+.|++||+|
T Consensus 26 ~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~amkg-- 103 (321)
T KOG0819|consen 26 RKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAMKG-- 103 (321)
T ss_pred HHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHHhc--
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccCccHHHHHHHHHhhccCCccccCHHHHHHHHHHHHH
Q 022397 81 SGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIEAAASEANQLHE 160 (298)
Q Consensus 81 ~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l~~l~~~~r~~~~~vd~~~~~~da~~L~~ 160 (298)
.||||.+||||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.++++.|++.+.||..+|.+||+.|++
T Consensus 104 -~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA~~L~~ 182 (321)
T KOG0819|consen 104 -LGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDAQDLYE 182 (321)
T ss_pred -cCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hHhcCCC-ChhhHHHHHhcCCHHHHHHHHHHHHHhhCCChHHHhhhhcCCcHHHHHHHHHHhhcCchhhHHHHHHhhccc
Q 022397 161 AIKAKQL-DHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPERHFAEVIRTSIVG 239 (298)
Q Consensus 161 A~~~~~~-~~~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g~~~~~ll~lv~~~~~~~~~~A~~l~~a~~g 239 (298)
|+..+++ |+..|++||++||.+||+.++++|++.+|+++++.|+.+++|+++.+|++++.|++|||.|||+.||.||+|
T Consensus 183 Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~~yFA~~L~~amkg 262 (321)
T KOG0819|consen 183 AGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPPAYFAERLRKAMKG 262 (321)
T ss_pred HhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHHHHHHHHHHHHHhc
Confidence 9998877 555899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHhcCHHHHHHHHHHhhhhhCCChHHhhhhcCcHHHHHHHHHhhcCCC
Q 022397 240 FGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGSKF 298 (298)
Q Consensus 240 ~gtd~~~L~rii~~r~~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg~~~~~ll~l~~~~~ 298 (298)
.|||+.+||||++||||+||..|+++|+++||+||.++|+++|||||+++|++|||++.
T Consensus 263 ~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~~ 321 (321)
T KOG0819|consen 263 LGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGDD 321 (321)
T ss_pred cCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-51 Score=357.97 Aligned_cols=211 Identities=28% Similarity=0.351 Sum_probs=203.8
Q ss_pred CcccccCCCCHHHHHHHHhCCCHHHHHHHHHHHHhhhchhHHHHhhhcccccHHHHHHHhccC-----------cHHHHH
Q 022397 1 MNLYAGLGTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWTLD-----------PAERDA 69 (298)
Q Consensus 1 ~~A~~g~Gtde~~li~il~~rs~~q~~~I~~~Y~~~~~~~L~~~l~~~~sG~~~~ll~~l~~~-----------~~~~da 69 (298)
++||||+||||.+||||+|+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.|+.+ .+..||
T Consensus 98 ~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA 177 (321)
T KOG0819|consen 98 KKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDA 177 (321)
T ss_pred HHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999852 489999
Q ss_pred HHHHHHhccCCCCCCchHHHHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccCccHHHHHHHHHhhccCCccccCHH
Q 022397 70 KMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLDIE 149 (298)
Q Consensus 70 ~~l~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l~~l~~~~r~~~~~vd~~ 149 (298)
+.|++|.+++ +|||+..++.|||+||.+||+.+.+.|+..+|+++++.|+++++|+|+.+|++++.|.++++
T Consensus 178 ~~L~~Age~k--~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~n~~------ 249 (321)
T KOG0819|consen 178 QDLYEAGEKK--WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIRNPP------ 249 (321)
T ss_pred HHHHHHhhhh--ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHcCHH------
Confidence 9999999997 99999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHHHHHHhHhcCCCChhhHHHHHhcCCHHHHHHHHHHHHHhhCCChHHHhhhhcCCcHHHHHHHHHHh
Q 022397 150 AAASEANQLHEAIKAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILC 221 (298)
Q Consensus 150 ~~~~da~~L~~A~~~~~~~~~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g~~~~~ll~lv~~ 221 (298)
.++|+.|+.||+|.|+++.+||||+++||+.+|..|..+|+++||++|.++|++.+||||+++|++|+++
T Consensus 250 --~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 250 --AYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGG 319 (321)
T ss_pred --HHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999754
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.69 E-value=8.9e-17 Score=112.43 Aligned_cols=66 Identities=36% Similarity=0.637 Sum_probs=63.4
Q ss_pred hHHHHHHhhcccCCCchhhHHHHHHhcCHHHHHHHHHHhhhhhCCChHHhhhhcCcHHHHHHHHHh
Q 022397 228 HFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 293 (298)
Q Consensus 228 ~~A~~l~~a~~g~gtd~~~L~rii~~r~~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg~~~~~ll~l 293 (298)
++|+.|+.||+|+|+|+..+++|+++|++.++..|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.69 E-value=9.6e-17 Score=112.27 Aligned_cols=66 Identities=38% Similarity=0.503 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCCCCCCchHHHHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccCccHHHHHHHH
Q 022397 67 RDAKMAKEALKKSKSGVKHLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRL 135 (298)
Q Consensus 67 ~da~~l~~A~~g~~~~gtde~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l~~l 135 (298)
.||+.|++|++| +|+|+.++++|||+||+.|++.|+++|+..||++|+++|+++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~---~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKG---WGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSS---SSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccC---CCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999 899999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.59 E-value=2.4e-15 Score=100.39 Aligned_cols=53 Identities=43% Similarity=0.680 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHhhhchhHHHHhhhcccccHHHHHHHh
Q 022397 8 GTDEKAVTWVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMW 60 (298)
Q Consensus 8 Gtde~~li~il~~rs~~q~~~I~~~Y~~~~~~~L~~~l~~~~sG~~~~ll~~l 60 (298)
||||..|++|+++||+.||+.|+++|+..||++|+++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999875
No 6
>smart00335 ANX Annexin repeats.
Probab=99.43 E-value=3.2e-13 Score=90.09 Aligned_cols=53 Identities=40% Similarity=0.702 Sum_probs=51.5
Q ss_pred CCchhhHHHHHHhcCHHHHHHHHHHhhhhhCCChHHhhhhcCcHHHHHHHHHh
Q 022397 241 GTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTL 293 (298)
Q Consensus 241 gtd~~~L~rii~~r~~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg~~~~~ll~l 293 (298)
|||+..|++|+++|++.++..|+.+|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999875
No 7
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=66.97 E-value=18 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=35.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhhCCChHHHhhhhc--------CCcHHHHHHHH
Q 022397 171 QVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVG--------KGDLVSLMKMV 218 (298)
Q Consensus 171 ~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~--------~g~~~~~ll~l 218 (298)
...+.|.++||.-+......+++-.+.+|.+.+.-++ .|||..++.++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~ 90 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRAL 90 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4557788889999999999999988899999988763 45666665554
No 8
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=59.42 E-value=1.9e+02 Score=28.69 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccCccHH-HHHHHHHhhccCCccccCHHHHHHHHHHHHHhHh
Q 022397 85 HLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLR-KVLLRLVSSFRYDKELLDIEAAASEANQLHEAIK 163 (298)
Q Consensus 85 de~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~-~~l~~l~~~~r~~~~~vd~~~~~~da~~L~~A~~ 163 (298)
|-..+-+.+..+.|+++. |...|...|.+-|..-+..+.+.... -..++++...++-. +-.++++-......+
T Consensus 292 dL~~i~e~i~~~~pp~~N-I~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~-----~t~e~~f~f~~dev~ 365 (742)
T COG5173 292 DLSFIRENISLSFPPFDN-ILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYY-----NTIESKFNFIADEVG 365 (742)
T ss_pred HHHHHHHHccccCCchHH-HHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH-----HHHHHhCCccHHHhc
Confidence 445666777888888775 77889999988888877776544322 23456665555321 223445444555555
Q ss_pred cCCCC
Q 022397 164 AKQLD 168 (298)
Q Consensus 164 ~~~~~ 168 (298)
|.-.|
T Consensus 366 ~~l~d 370 (742)
T COG5173 366 GRLLD 370 (742)
T ss_pred ccccC
Confidence 44333
No 9
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=45.19 E-value=1.4e+02 Score=29.60 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=86.5
Q ss_pred HHHhCCCHHHHHHHHHHHHhhhchhHHHHhhhcccccHHHHHHHhc-------cCcHHHHHHHHHHHhccCCCCCCchHH
Q 022397 16 WVLSQRTASQRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWT-------LDPAERDAKMAKEALKKSKSGVKHLQV 88 (298)
Q Consensus 16 ~il~~rs~~q~~~I~~~Y~~~~~~~L~~~l~~~~sG~~~~ll~~l~-------~~~~~~da~~l~~A~~g~~~~gtde~~ 88 (298)
+.+....|.. -.|.+.|.+.|.+.|..-+..+.+-.......... .+-.+.++-....+++|. .+.+|..
T Consensus 298 e~i~~~~pp~-~NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~--l~d~e~g 374 (742)
T COG5173 298 ENISLSFPPF-DNILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGR--LLDNETG 374 (742)
T ss_pred HHccccCCch-HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhccc--ccCCcch
Confidence 4444444443 35788899999999998888877655433332221 234555565666666664 5555431
Q ss_pred HHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccCccHHHHHHHHHhhccCCcc-ccCHHHHHHHHHHHHHhHhcC-C
Q 022397 89 IVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKE-LLDIEAAASEANQLHEAIKAK-Q 166 (298)
Q Consensus 89 lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l~~l~~~~r~~~~-~vd~~~~~~da~~L~~A~~~~-~ 166 (298)
. +.+.|......-+.+-+.+-+...+...+-.=-...++..+ .+-++-+. .-+.+..-+.-. +
T Consensus 375 ~--------------L~~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~-~fQmitqQ~e~ia~ 439 (742)
T COG5173 375 E--------------LLEKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVS-LFQMITQQLEPIAF 439 (742)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHH-HHHHHHHHhhhhhc
Confidence 1 12445544333333322222211121111000000111111 11112211 122232222221 2
Q ss_pred CChhhHHHHHhcCCHHHHHHHHHHHHHhhCCChHHHhhhhcCC--------cHHHHHHHH
Q 022397 167 LDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKG--------DLVSLMKMV 218 (298)
Q Consensus 167 ~~~~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g--------~~~~~ll~l 218 (298)
++...++.++. +|+..+.+.|++...-.|.+.+++.++| -+...|+++
T Consensus 440 tn~sdvvgiV~----~~i~~~~tk~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav 495 (742)
T COG5173 440 TNRSDVVGIVF----AHITRTITKYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAV 495 (742)
T ss_pred CCccchhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHH
Confidence 34434443332 4677778888888877777777776543 466666655
No 10
>PF14003 YlbE: YlbE-like protein
Probab=38.71 E-value=75 Score=21.77 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHhccC
Q 022397 89 IVEISCASSPYHLAAVRQAYCALFDCSIEEDITAVVS 125 (298)
Q Consensus 89 lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~~~s 125 (298)
..--..+|+|.++.+.-.++..-|++.+-+-|.+-..
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n 49 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSN 49 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHh
Confidence 3445679999999999999999999999888876543
No 11
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=36.54 E-value=72 Score=23.26 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=36.4
Q ss_pred HhhcCchhhHHHHHHhhcccCCCchhhHHHHHHhcCHHHHHHHHHHhhhhhCCChHHhh
Q 022397 220 LCIRCPERHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDV 278 (298)
Q Consensus 220 ~~~~~~~~~~A~~l~~a~~g~gtd~~~L~rii~~r~~~dl~~Ik~~y~~~yg~sL~~~i 278 (298)
.+..-.|.+-.+.|.+|++. .|-..|.+.+ |+..|+...+......+.+.+
T Consensus 7 ~~~~~sPy~al~~i~~Ai~~--~D~~~l~~~V------D~~avr~slk~ql~~~~~~~~ 57 (95)
T PF11159_consen 7 GYYAASPYYALYQIRQAIQA--HDAAALARYV------DFPAVRASLKDQLNAELVSRI 57 (95)
T ss_pred HHHHHCHHHHHHHHHHHHHH--cCHHHHHHHc------CHHHHHHHHHHHHHHHHHhhc
Confidence 33445677789999999976 6666666554 777787777777766776655
No 12
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=33.82 E-value=36 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhhhchh
Q 022397 20 QRTASQRQLIRQAYQRLYNES 40 (298)
Q Consensus 20 ~rs~~q~~~I~~~Y~~~~~~~ 40 (298)
+.|++++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 358999999999999999644
No 13
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.47 E-value=1.9e+02 Score=24.62 Aligned_cols=65 Identities=6% Similarity=0.155 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhhhhccHHHHHHhccCccHHHHHHHHHhhccCCccccC-HHHHHHHHHHHHHhH
Q 022397 97 SPYHLAAVRQAYCALFDCSIEEDITAVVSMPLRKVLLRLVSSFRYDKELLD-IEAAASEANQLHEAI 162 (298)
Q Consensus 97 s~~~l~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l~~l~~~~r~~~~~vd-~~~~~~da~~L~~A~ 162 (298)
+-.-|..|++.|...||.....++.......|.+.|..-++..-++|. +| ...+...+.+++.-|
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM 141 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVM 141 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHH
Confidence 347899999999999999988888777777777777766655444443 32 334444445555444
No 14
>PF14003 YlbE: YlbE-like protein
Probab=32.65 E-value=52 Score=22.53 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=32.9
Q ss_pred HHhcCHHHHHHHHHHhhhhhCCChHHhhhhcCcH-HHHHHHHHh
Q 022397 251 IITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSG-DYQDFLLTL 293 (298)
Q Consensus 251 i~~r~~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg-~~~~~ll~l 293 (298)
..+|.|.++.+.-.++...|++++-+.|.+-.+| ..-.+++.+
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M 60 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEM 60 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHH
Confidence 3479999999999999999999999999875443 344444443
No 15
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=32.58 E-value=12 Score=23.75 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred ccCCCCHHHHHHHHhCCCH-HHHHHHHHHHHh
Q 022397 5 AGLGTDEKAVTWVLSQRTA-SQRQLIRQAYQR 35 (298)
Q Consensus 5 ~g~Gtde~~li~il~~rs~-~q~~~I~~~Y~~ 35 (298)
+.+|-+.+-|++.|-+-.+ +|-.+|+.||.-
T Consensus 11 ~tMGY~kdeI~eaL~~~~~~~~~neIkDAY~L 42 (46)
T PF08587_consen 11 KTMGYDKDEIYEALESSEPSPQSNEIKDAYLL 42 (46)
T ss_dssp CTT---HHHHHHHCCSSS------SSCCHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 3468899999999998766 888899999864
No 16
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=28.65 E-value=4.4e+02 Score=23.78 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhhCCChHHHhhhhcCCcHHHHHHHHHHhhcCchhhHHHHHHhhcccCCCchhhHHHHHH
Q 022397 174 HILAT-RNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAII 252 (298)
Q Consensus 174 ~il~~-rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g~~~~~ll~lv~~~~~~~~~~A~~l~~a~~g~gtd~~~L~rii~ 252 (298)
+-|+. -.+.||++..=-|..+|=..-..+|..+-.| ++.+..++..+-..|...-..+.|+|+.-...|-++.
T Consensus 165 ~~L~g~~~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g~------~~wLqsl~~~~yeear~~L~~lpGVG~KVADCI~Lm~ 238 (323)
T KOG2875|consen 165 QALAGPEVEAELRKLGFGYRAKYISATARALQEKQGG------LAWLQSLRKSSYEEAREALCSLPGVGPKVADCICLMS 238 (323)
T ss_pred HHhcCcHhHHHHHHcCcchhHHHHHHHHHHHHHhccc------chHHHHHhcccHHHHHHHHhcCCCCcchHhhhhhhhh
Confidence 33443 4688999998889988866666666666555 2223344444445566666778999998877776554
Q ss_pred hcC------HHHHHHHHHHhhhhhCCChHHhhhhcCcHHHHHHHHHhhc
Q 022397 253 TRA------EVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTG 295 (298)
Q Consensus 253 ~r~------~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg~~~~~ll~l~~ 295 (298)
..- ++.+-.|..-| ...|.+=.+.+.....|.-..++..++|
T Consensus 239 l~~~~~VPVDvHi~ria~~y-~l~~~~g~k~l~~ki~~ev~~~f~~~~G 286 (323)
T KOG2875|consen 239 LDKLSAVPVDVHIWRIAQDY-ILPGLSGAKELTPKINGEVSNFFRSLWG 286 (323)
T ss_pred cCCCCcccchhhHHHHhhcc-cCCCccccccCCcchhHHHHHHHHHHhc
Confidence 321 34555777767 3444443333444455555555555554
No 17
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.98 E-value=1.6e+02 Score=25.02 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhhCCChHHHhhhhcCCcHHHHHHHHHHhhcCchh
Q 022397 180 NFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMVILCIRCPER 227 (298)
Q Consensus 180 s~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g~~~~~ll~lv~~~~~~~~ 227 (298)
+..-|..|.+.|.+.||.....++.-.+..+|..-|..-.....+.|.
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 467889999999999999988888877777777777765555444444
No 18
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=26.57 E-value=4.7e+02 Score=23.44 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=29.5
Q ss_pred hhHHHHHHhhcccCCCchhhHHHHHHhcCHHHHHHHHHHhhhh-hCCChHH
Q 022397 227 RHFAEVIRTSIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIM-YKNTLED 276 (298)
Q Consensus 227 ~~~A~~l~~a~~g~gtd~~~L~rii~~r~~~dl~~Ik~~y~~~-yg~sL~~ 276 (298)
.++...+..+.+-.|.+...+.+++. .++|+.+|+..|.-+ ||.+.+.
T Consensus 172 ~yy~~~~~~~~~~~~~~~~~l~~~~~--~~iD~~Ni~~~~R~k~~~~~~~~ 220 (337)
T PF01992_consen 172 RYYEDLLKAAKKLSGSEREILRELLG--MEIDLTNIKTILRAKKYGLSPEE 220 (337)
T ss_dssp HHHHHHHHHHH---TSS-HHHHHHHH--HHHHHHHHHHHHHTTTS---GGG
T ss_pred HHHHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCHhh
Confidence 46667777766334466666667775 468999999999954 6766654
No 19
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=24.01 E-value=1.7e+02 Score=20.60 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhCCC-hHHhhhhcCcHHHHHHHH
Q 022397 256 EVDMKLIKEVYPIMYKNT-LEDDVIGDTSGDYQDFLL 291 (298)
Q Consensus 256 ~~dl~~Ik~~y~~~yg~s-L~~~i~~~~sg~~~~~ll 291 (298)
+.|+.+-..+|++.|+++ ..+.|..+.+.+++.++-
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFr 53 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFR 53 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHH
Confidence 457777778899999988 566788888888887764
No 20
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.72 E-value=7.4e+02 Score=25.30 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHhhhhccHHHHHHh-ccCccHHHHHHHHHhhccCCccccCHHHHHHHHH-HHHHhH
Q 022397 85 HLQVIVEISCASSPYHLAAVRQAYCALFDCSIEEDITA-VVSMPLRKVLLRLVSSFRYDKELLDIEAAASEAN-QLHEAI 162 (298)
Q Consensus 85 de~~lieIl~~rs~~~l~~i~~~Y~~~y~~~L~~~I~~-~~sg~~~~~l~~l~~~~r~~~~~vd~~~~~~da~-~L~~A~ 162 (298)
|-..+.+.+..+.|+++.-... |-..|...|..-+.. .....+..-.+.++ ..+. ..++..
T Consensus 249 dL~~~~~~l~~cfpp~~~if~~-~l~~Yh~~ls~ll~dl~s~~l~~~eil~ll----------------awV~~~~~~~~ 311 (667)
T KOG2286|consen 249 DLRVAKRVLVPCFPPHYNIFSA-YLELYHQALSDLLRDLASEALELREILQLL----------------AWVRNEYYTPL 311 (667)
T ss_pred HHHHHHHhhcccCCchhHHHHH-HHHHHHHHHHHHHHHHhhccccHHHHHHHH----------------HHHHHHhcChh
Q ss_pred hcCCCChhhHHHHHhcCCHHHHHHHHHHHHHhhCCChHHHhhhhcCCcHHHHHHHH-------HHhhcCchhhHHHHHHh
Q 022397 163 KAKQLDHDQVVHILATRNFFQLKATFERYEQMHGSPIDEDISSVGKGDLVSLMKMV-------ILCIRCPERHFAEVIRT 235 (298)
Q Consensus 163 ~~~~~~~~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~~g~~~~~ll~l-------v~~~~~~~~~~A~~l~~ 235 (298)
... +.....++=....+.|...+.+.|-.....++.+.+..-+.=+........ -.+..+-|.-+..++..
T Consensus 312 l~~--~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q 389 (667)
T KOG2286|consen 312 LQL--NVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQ 389 (667)
T ss_pred hhc--cchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHH
Q ss_pred hcccCCCchhhHHHHHHhcCHHHHHHHHHHhhhhhCCChHHhhhhcCcHHHHHHHHHhhcCC
Q 022397 236 SIVGFGTDEAALNRAIITRAEVDMKLIKEVYPIMYKNTLEDDVIGDTSGDYQDFLLTLTGSK 297 (298)
Q Consensus 236 a~~g~gtd~~~L~rii~~r~~~dl~~Ik~~y~~~yg~sL~~~i~~~~sg~~~~~ll~l~~~~ 297 (298)
.+.........|.--+...+-..+.....-|.+.+....++. +.+.++.|+.++++..+.+
T Consensus 390 ~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~~ 450 (667)
T KOG2286|consen 390 QLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINNN 450 (667)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhch
No 21
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=23.58 E-value=4.1e+02 Score=21.73 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHhCCCHHHHHHHHHHHHhhh-chhHHHHhhhcccccHHHHHHHhccCcHHHHHHHHHHHhccCCCCCCchHHHH
Q 022397 16 WVLSQRTASQRQLIRQAYQRLY-NESLIDNITSELSGDFKDAVIMWTLDPAERDAKMAKEALKKSKSGVKHLQVIV 90 (298)
Q Consensus 16 ~il~~rs~~q~~~I~~~Y~~~~-~~~L~~~l~~~~sG~~~~ll~~l~~~~~~~da~~l~~A~~g~~~~gtde~~li 90 (298)
.+..-.+..|+|+.+++|.-+= +++ -- .-.+++++++.++=+.+.+.......+-..| ..+..++.
T Consensus 21 nvFamf~q~QIqEfKEAF~~mDqnrD--G~---IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~g----PINft~FL 87 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLMDQNRD--GF---IDKEDLRDMLASLGKIASDEELDAMMKEAPG----PINFTVFL 87 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHHhccCC--Cc---ccHHHHHHHHHHcCCCCCHHHHHHHHHhCCC----CeeHHHHH
Confidence 4666678899999999997542 111 00 0134678888777666554433333333333 24665544
No 22
>PF15595 Imm31: Immunity protein 31
Probab=23.54 E-value=2.3e+02 Score=21.35 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhCCChHHHhhhhc--------CCcHHHHHHHHHHhhcCchhhHHHHHHhhcccCCCchhhHHHHHH
Q 022397 181 FFQLKATFERYEQMHGSPIDEDISSVG--------KGDLVSLMKMVILCIRCPERHFAEVIRTSIVGFGTDEAALNRAII 252 (298)
Q Consensus 181 ~~~l~~I~~~Y~~~~g~~L~~~i~~~~--------~g~~~~~ll~lv~~~~~~~~~~A~~l~~a~~g~gtd~~~L~rii~ 252 (298)
=..|.++...|-+.+..+|.+.|.-.. +++...+ +-++.+++.++ +|+..|..+|
T Consensus 39 GY~W~~l~~~~l~~~~p~l~~~i~fDpEagmF~ays~~~eal------------~~l~~~i~~~~----ed~~~i~~~i- 101 (107)
T PF15595_consen 39 GYDWEALARVYLRENAPELLEKIDFDPEAGMFCAYSEDKEAL------------KKLAEIIKEAC----EDEELIYDLI- 101 (107)
T ss_pred CccHHHHHHHHHHHhChhHHHhcCcCCCCCEEEEecCCHHHH------------HHHHHHHHHHH----CCHHHHHHHH-
Confidence 345667777777777777777765322 2332222 23455666665 5677666666
Q ss_pred hcCHH
Q 022397 253 TRAEV 257 (298)
Q Consensus 253 ~r~~~ 257 (298)
.+.+.
T Consensus 102 ~~ae~ 106 (107)
T PF15595_consen 102 SRAEI 106 (107)
T ss_pred hhccC
Confidence 55543
No 23
>PF11757 RSS_P20: Suppressor of RNA silencing P21-like; InterPro: IPR021742 This is a large family of putative suppressors of RNA silencing proteins, P20-P25, from ssRNA positive-strand viruses such as Closterovirus, Potyvirus and Cucumovirus families. RNA silencing is one of the major mechanisms of defence against viruses, and, in response, some viruses have evolved or acquired functions for suppression of RNA silencing. These counter-defencive viral proteins with RNA silencing suppressor (RSS) activity were originally discovered in the members of plant virus genera Potyvirus and Cucumovirus. Each of the conserved blocks of amino acids found in P21-like proteins corresponds to a computer-predicted alpha-helix, with the most C-terminal element being 42 residues long. This suggests conservation of the predominantly alpha-helical secondary structure in the P21-like proteins.
Probab=21.86 E-value=4.1e+02 Score=21.06 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhchhHHHHhhhcccccHHHHHHHhcc------CcHHHHHHHHHHHhccCCCCCCchHHHHHHhccCCH
Q 022397 25 QRQLIRQAYQRLYNESLIDNITSELSGDFKDAVIMWTL------DPAERDAKMAKEALKKSKSGVKHLQVIVEISCASSP 98 (298)
Q Consensus 25 q~~~I~~~Y~~~~~~~L~~~l~~~~sG~~~~ll~~l~~------~~~~~da~~l~~A~~g~~~~gtde~~lieIl~~rs~ 98 (298)
-+.+...+|..... +...+|+..+++.++-...... ...+. .++.+... -.+.+..+-|+.+|+
T Consensus 11 ~l~~~I~~Fn~~~a--~v~~~KsD~N~~~~~g~~~~~~~K~~ll~tiE~---~lr~~~~~-----lRr~vv~~~L~~~S~ 80 (137)
T PF11757_consen 11 VLNECILEFNDSTA--LVHCMKSDANDDVRDGHYSMASEKKRLLCTIEA---NLREALDL-----LRRKVVRDKLGIRSP 80 (137)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhccccchhcchhhhhHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHccCcH
Confidence 34443444555443 4556666665543322221111 12232 34444444 344677788999998
Q ss_pred HHH-HHHHHHHHhhhhccHHHHHHhccCccHHHHH
Q 022397 99 YHL-AAVRQAYCALFDCSIEEDITAVVSMPLRKVL 132 (298)
Q Consensus 99 ~~l-~~i~~~Y~~~y~~~L~~~I~~~~sg~~~~~l 132 (298)
.++ .-+.+.|....+.++.+.++.+...--+..|
T Consensus 81 ~dlv~Ff~~ky~~lt~v~~~e~~~~~~k~~~~~VL 115 (137)
T PF11757_consen 81 KDLVAFFVKKYSELTHVPFSEAMEMKMKPLSKAVL 115 (137)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 776 5577888889999999999888754433333
No 24
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=21.60 E-value=2.2e+02 Score=17.87 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=18.1
Q ss_pred HHHHHHh-CCCHHHHHHHHHHHHhhh
Q 022397 13 AVTWVLS-QRTASQRQLIRQAYQRLY 37 (298)
Q Consensus 13 ~li~il~-~rs~~q~~~I~~~Y~~~~ 37 (298)
.+..||- +-+++||+.|.+.|-..-
T Consensus 15 ~vTniln~~V~~~qR~~iAe~Fa~AL 40 (44)
T PF07208_consen 15 MVTNILNTSVPPAQRQAIAEKFAQAL 40 (44)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 4566664 679999999999887643
No 25
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=20.29 E-value=91 Score=18.63 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhCCChH
Q 022397 258 DMKLIKEVYPIMYKNTLE 275 (298)
Q Consensus 258 dl~~Ik~~y~~~yg~sL~ 275 (298)
-+++++.+-++.||++|-
T Consensus 9 ai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHhchhhh
Confidence 356788889999999983
Done!