BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022399
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/214 (54%), Positives = 149/214 (69%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S D+ +
Sbjct: 35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAA-NSTPG 93
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 94 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 152
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWTDYL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 153 VLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 212
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 213 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 246
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/214 (53%), Positives = 150/214 (70%), Gaps = 8/214 (3%)
Query: 81 PYSLKTLTLDGHLNFDEVHNAA--RDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSH 138
P SL L LDG L D AA DFGN LP+AVL+P+S +D+ +
Sbjct: 17 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAA-NSTPG 75
Query: 139 SELTVAARGHGHSLQGQAQAHQGVVINMESLQG----PKMQVYAENSFYVDVSGGELWIN 194
T+A RG GHSL GQA A GVV+NM SL P++ V A+ YVD G ++WI+
Sbjct: 76 WPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDAAAPPRINVSADGR-YVDAGGEQVWID 134
Query: 195 ILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIIN 254
+L S+ G+AP+SWT+YL+LTVGGTLSNAGISGQAF+HGPQISNV +++V+TG GE++
Sbjct: 135 VLRASLARGVAPRSWTEYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT 194
Query: 255 CSEKQNSELFHSVLGGLGQFGIITRARISLEPAP 288
CS++ N++LF +VLGGLGQFG+ITRARI++EPAP
Sbjct: 195 CSKQLNADLFDAVLGGLGQFGVITRARIAVEPAP 228
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 139/197 (70%), Gaps = 8/197 (4%)
Query: 101 AARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQ 160
A RDFG + P AV+ P DIA VK +LTVAARG+GHS+ GQA A
Sbjct: 50 AGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALR---SDKLTVAARGNGHSINGQAXAEG 106
Query: 161 GVVINMESLQGPKMQVY----AENSFYVDVSGGELWINILHESV-KYGLAPKSWTDYLHL 215
G+V++ + +V + + +VDVSGG LW ++L V +YGLAP+SWTDYL L
Sbjct: 107 GLVVDXSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLGL 166
Query: 216 TVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFG 275
TVGGTLSNAG+SGQAF++GPQ SNV +L+VVTG G+++ CSE +NSELF SVLGGLGQFG
Sbjct: 167 TVGGTLSNAGVSGQAFRYGPQTSNVTELDVVTGNGDVVTCSEIENSELFFSVLGGLGQFG 226
Query: 276 IITRARISLEPAPDMVK 292
IITRAR+ L+PAPD V+
Sbjct: 227 IITRARVLLQPAPDXVR 243
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 95 FDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQG 154
FD + N + R+ PS + S D+A +V++ + G L ++ R GH+ G
Sbjct: 24 FDAIANI---WDGRHLQRPSLIARCLSAGDVAKSVRYACDNG----LEISVRSGGHNPNG 76
Query: 155 QAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWI-------NILHESVKYGLAPK 207
A G+V+++ + NS ++D +G I +++ E+ K+GLA
Sbjct: 77 YATNDGGIVLDLRLM----------NSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAAV 126
Query: 208 SWTDYLHLTVG--GTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFH 265
+ +H VG G N G+ ++G N+ +VT G++I CS+ + ELF
Sbjct: 127 TG---MHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFW 183
Query: 266 SVLGGLGQFGIITRARISLEPAPDMVKANY 295
+V G FG++T + L P + A +
Sbjct: 184 AVRGAGPNFGVVTEVEVQLYELPRKMLAGF 213
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 121 SVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAEN 180
S SD V+ + V ARG G S AQ G+VI+M +L ++
Sbjct: 36 STSDPEVIVRAVTRAAEEGGRGVIARGLGRSYGDNAQNGGGLVIDMPALN--RIHSIDSG 93
Query: 181 SFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISN- 239
+ VDV G ++ ++ +GL +TVGG + I G+ N
Sbjct: 94 TRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAI-GCDIHGKNHHSAGSFGNH 152
Query: 240 VHQLEVVTGKGEIINCSEK-QNSELFHSVLGGLGQFGIITRARISLEP 286
V +E++T GE+ + + +S+LF + +GG G GII RA I + P
Sbjct: 153 VRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGLTGIILRATIEMTP 200
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 149 GHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKS 208
G S AQ G+VI+M L + ++ VD+ G ++ ++ +GL
Sbjct: 77 GRSYGDNAQNGGGLVIDMTPLN--TIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPV 134
Query: 209 WTDYLHLTVGGTLSNAGISGQAFQHGPQISN-VHQLEVVTGKGEIINCSEK-QNSELFHS 266
+TVGG ++ I G+ N V ++++T GEI + + +++ELF +
Sbjct: 135 LPGTRQVTVGGAIA-CDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWA 193
Query: 267 VLGGLGQFGIITRARISLEP 286
+GG G GII RA I + P
Sbjct: 194 TVGGNGLTGIIMRATIEMTP 213
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 6/145 (4%)
Query: 147 GHGHSLQGQAQAHQGVVINMESLQG-PKMQVYAENSFYVDVSGGELWINILHESVKYGLA 205
G GHS A+ G V + SL G P + + V V GG + + GLA
Sbjct: 47 GSGHSFNEIAEPGDGGV--LLSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLA 104
Query: 206 PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFH 265
+ H++V G+++ G G +G S V ++E+VT G + + + E F
Sbjct: 105 LPNMASLPHISVAGSVAT-GTHGSGVGNGSLASVVREVELVTADGSTVVIA--RGDERFG 161
Query: 266 SVLGGLGQFGIITRARISLEPAPDM 290
+ LG G++T + LEPA +M
Sbjct: 162 GAVTSLGALGVVTSLTLDLEPAYEM 186
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 156 AQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL 215
AQ G+VI+M +L ++ + VDV G ++ ++ +GL +
Sbjct: 6 AQNGGGLVIDMPALN--RIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQV 63
Query: 216 TVGGTLSNAGISGQAFQHGPQISN-VHQLEVVTGKGEIINCSEK-QNSELFHSVLGGLGQ 273
TVGG + I G+ N V +E++T GE+ + + +S+LF + +GG G
Sbjct: 64 TVGGAIG-CDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDLFWATVGGNGL 122
Query: 274 FGIITRARISLEP 286
GII RA I + P
Sbjct: 123 TGIILRATIEMTP 135
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 13/187 (6%)
Query: 116 VLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG-VVINMESLQGPKM 174
VL P S ++ I ++ + + + + +G L G H G VVI+++ K+
Sbjct: 55 VLRPGSTEEVVA----ICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRXD--KI 108
Query: 175 QVYAENSFYVDVSGGELWINILHESVKYG-LAPKSWTDYLHLTVGGTLSNAGISGQAFQH 233
+ +S + V G + + ++ + L P S T+GG LS A +
Sbjct: 109 REIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAY 168
Query: 234 GPQISNVHQLEVVTGKGEIINCS---EKQNS--ELFHSVLGGLGQFGIITRARISLEPAP 288
G +EVV G + N +K N+ +L +G G GIIT A + L P P
Sbjct: 169 GLARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKP 228
Query: 289 DMVKANY 295
V+ +
Sbjct: 229 RAVETAF 235
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHS----LQGQAQAHQGVVI 164
++ +P VL P D+ V + L + G G S L A + +I
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETR-TII 256
Query: 165 NMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSN 223
++++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 257 SLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316
Query: 224 AGISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITR 279
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT
Sbjct: 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 280 ARISLEPAPDMVK 292
A I + P P+ K
Sbjct: 377 ATIKIRPTPEYQK 389
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHS----LQGQAQAHQGVVI 164
++ +P VL P D+ V + L + G G S L A + +I
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETR-TII 256
Query: 165 NMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSN 223
++++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 257 SLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316
Query: 224 AGISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITR 279
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT
Sbjct: 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 280 ARISLEPAPDMVK 292
A I + P P+ K
Sbjct: 377 ATIKIRPTPEYQK 389
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 14/193 (7%)
Query: 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHS----LQGQAQAHQGVVI 164
++ +P VL P D+ V + L + G G S L A + +I
Sbjct: 202 FERIPDIVLWPTCHDDVVKIVN----LACKYNLCIIPIGGGTSVSYGLMCPADETR-TII 256
Query: 165 NMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHL-TVGGTLSN 223
++++ Q ++ EN+ V G + + + G D L TVGG +S
Sbjct: 257 SLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316
Query: 224 AGISGQAFQHGPQISNVHQLEVVTGKGEI-INCSEKQNS---ELFHSVLGGLGQFGIITR 279
+ +G V ++VVT +G I +C + S ++ H ++G G G+IT
Sbjct: 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITE 376
Query: 280 ARISLEPAPDMVK 292
A I + P P+ K
Sbjct: 377 ATIKIRPTPEYQK 389
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 233 HGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMV 291
HG + + VV I++ SE +N++LF ++ GG G F I++ + AP+++
Sbjct: 157 HGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEII 215
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 233 HGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMV 291
HG + + VV I++ SE +N++LF ++ GG G F I++ + AP+++
Sbjct: 157 HGLTLDWLIGATVVLADASIVHVSETENADLFWALRGGGGGFAIVSEFEFNTFEAPEII 215
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 217 VGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGI 276
+ G ++ G + HG + +V + VV G I+ S +N++LF + G FGI
Sbjct: 137 ISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGI 196
Query: 277 ITRARISLEPAPDMV 291
+ +++ PAP ++
Sbjct: 197 VAVWKLATFPAPKVL 211
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFT-AGWAPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMV 291
+ V
Sbjct: 218 EKV 220
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 71 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 126
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 127 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFT-AGWCPTVGTGGHISGGGFGMMSR 185
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 186 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 242
Query: 289 DMV 291
+ V
Sbjct: 243 EKV 245
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFT-AGWAPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMV 291
+ V
Sbjct: 218 EKV 220
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 46 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 101
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFT-AGWCPTVGTGGHISGGGFGMMSR 160
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 161 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 217
Query: 289 DMV 291
+ V
Sbjct: 218 EKV 220
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 52 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 107
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 108 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGAISGGGFGMMSR 166
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 167 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 223
Query: 289 DMV 291
+ V
Sbjct: 224 EKV 226
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R GHS +G + ++I++ +L
Sbjct: 52 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLN 107
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 108 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTA-GWCPTVGTGGHISGGGFGMMSR 166
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 167 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 223
Query: 289 DMV 291
+ V
Sbjct: 224 EKV 226
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 16/186 (8%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQG----QAQAHQGVVINMES 168
P ++ P + S I V G + + R GH +G + V++M
Sbjct: 55 PLYIITPTNASHIQAAV----VCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNK 110
Query: 169 LQGPKMQVYAENSFYVDVSG--GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGI 226
++ + A + +VD G+L+ I S K G T +
Sbjct: 111 MRAVSIDGKAATA-WVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGML 169
Query: 227 SGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLE 285
++G NV +VV +G +++ + + F ++ GG G+ FGI+ ++ L
Sbjct: 170 ---LRKYGTAADNVIDAKVVDAQGRLLD-RKAMGEDHFWAIRGGGGESFGIVASWQVKLL 225
Query: 286 PAPDMV 291
P P V
Sbjct: 226 PVPPKV 231
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 12/183 (6%)
Query: 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQG--VVINMESLQ 170
PSA++ P S +++ T++ I T+ R G S +G + ++I++ +L
Sbjct: 49 PSAIILPGSKEELSNTIRCI----RKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLN 104
Query: 171 GPKMQVYAENSFYVDVSG-GELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQ 229
+ + +E ++ S GEL+ I S K G W + + G+ +
Sbjct: 105 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFT-AGWCPTVGTGGHISGGGFGMMSR 163
Query: 230 AFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ-FGIITRARISLEPAP 288
++G NV ++ G I++ + ++F ++ GG G +G I +I L P P
Sbjct: 164 --KYGLAADNVVDAILIDANGAILD-RQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVP 220
Query: 289 DMV 291
+ V
Sbjct: 221 EKV 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,301,931
Number of Sequences: 62578
Number of extensions: 366059
Number of successful extensions: 849
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 35
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)