Query 022399
Match_columns 298
No_of_seqs 280 out of 1643
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 1.2E-45 2.5E-50 363.5 26.0 241 53-296 3-250 (525)
2 KOG1231 Proteins containing th 100.0 4.1E-44 8.9E-49 336.9 19.5 229 58-290 5-241 (505)
3 TIGR01676 GLDHase galactonolac 100.0 9.8E-36 2.1E-40 293.3 21.3 188 99-294 48-235 (541)
4 PRK11230 glycolate oxidase sub 100.0 1.5E-35 3.2E-40 292.9 22.5 209 81-295 22-238 (499)
5 TIGR01678 FAD_lactone_ox sugar 100.0 5.3E-35 1.1E-39 284.6 22.1 185 102-294 4-188 (438)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 4.8E-35 1E-39 283.9 19.6 181 102-293 1-181 (419)
7 PLN02805 D-lactate dehydrogena 100.0 2.6E-34 5.6E-39 286.3 21.7 199 89-294 106-314 (555)
8 TIGR01677 pln_FAD_oxido plant- 100.0 7.3E-34 1.6E-38 282.7 22.7 188 98-291 17-215 (557)
9 COG0277 GlcD FAD/FMN-containin 100.0 5.1E-33 1.1E-37 271.2 19.0 197 91-294 9-213 (459)
10 PLN02465 L-galactono-1,4-lacto 100.0 2E-32 4.4E-37 271.7 21.9 187 97-291 81-267 (573)
11 TIGR00387 glcD glycolate oxida 100.0 1.9E-31 4.1E-36 258.5 18.1 174 116-295 1-181 (413)
12 PRK11282 glcE glycolate oxidas 100.0 1.9E-30 4.1E-35 245.5 18.8 167 121-295 3-177 (352)
13 PRK11183 D-lactate dehydrogena 100.0 3.9E-28 8.4E-33 237.2 16.8 205 81-295 6-273 (564)
14 PF01565 FAD_binding_4: FAD bi 100.0 2.4E-28 5.2E-33 202.0 12.5 138 113-256 1-139 (139)
15 PRK13905 murB UDP-N-acetylenol 99.9 2.6E-26 5.6E-31 213.7 15.0 176 89-289 9-194 (298)
16 KOG4730 D-arabinono-1, 4-lacto 99.9 2.3E-25 5E-30 210.5 17.1 185 104-295 41-225 (518)
17 KOG1232 Proteins containing th 99.9 1.3E-25 2.8E-30 208.0 9.9 209 79-293 54-271 (511)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 1.6E-24 3.5E-29 202.0 12.4 160 109-290 33-200 (305)
19 PRK14652 UDP-N-acetylenolpyruv 99.9 2.3E-24 5E-29 200.6 12.6 179 88-290 13-198 (302)
20 PRK13906 murB UDP-N-acetylenol 99.9 6E-24 1.3E-28 198.3 12.3 174 92-290 18-200 (307)
21 TIGR00179 murB UDP-N-acetyleno 99.9 3.9E-23 8.5E-28 191.0 12.7 161 109-290 9-183 (284)
22 PRK13903 murB UDP-N-acetylenol 99.9 1.7E-22 3.6E-27 191.8 15.6 159 109-288 29-197 (363)
23 PRK14649 UDP-N-acetylenolpyruv 99.9 1.3E-21 2.8E-26 181.7 13.6 165 109-289 17-194 (295)
24 PRK14653 UDP-N-acetylenolpyruv 99.8 7.1E-21 1.5E-25 176.6 12.1 158 109-290 30-196 (297)
25 KOG1233 Alkyl-dihydroxyacetone 99.8 3E-20 6.5E-25 173.0 13.6 184 104-293 152-345 (613)
26 PRK14650 UDP-N-acetylenolpyruv 99.8 2.5E-20 5.4E-25 172.8 11.1 160 109-290 29-197 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.8 5.4E-20 1.2E-24 168.5 12.0 160 109-288 17-184 (291)
28 PRK00046 murB UDP-N-acetylenol 99.8 1.7E-19 3.7E-24 169.4 13.3 158 109-287 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.8 5.2E-19 1.1E-23 166.4 11.7 162 109-290 26-239 (354)
30 KOG1262 FAD-binding protein DI 99.7 2.2E-17 4.8E-22 154.0 5.5 129 164-294 106-235 (543)
31 PRK14651 UDP-N-acetylenolpyruv 99.7 2.2E-16 4.8E-21 144.6 10.0 149 109-290 17-173 (273)
32 PRK13904 murB UDP-N-acetylenol 99.5 1.1E-13 2.4E-18 125.8 10.2 142 109-290 15-162 (257)
33 TIGR02963 xanthine_xdhA xanthi 97.4 0.00071 1.5E-08 67.1 8.8 150 112-285 191-359 (467)
34 PF00941 FAD_binding_5: FAD bi 97.0 0.00074 1.6E-08 58.0 4.0 153 113-282 2-168 (171)
35 PRK09799 putative oxidoreducta 96.9 0.002 4.3E-08 59.0 5.9 100 115-225 4-111 (258)
36 TIGR03312 Se_sel_red_FAD proba 96.6 0.0036 7.8E-08 57.3 5.6 100 115-225 3-110 (257)
37 PLN02906 xanthine dehydrogenas 95.8 0.021 4.6E-07 63.4 7.3 102 113-225 228-351 (1319)
38 PRK09971 xanthine dehydrogenas 95.8 0.0088 1.9E-07 55.7 3.7 101 115-225 6-119 (291)
39 TIGR03195 4hydrxCoA_B 4-hydrox 95.3 0.016 3.4E-07 54.8 3.5 101 113-224 4-117 (321)
40 TIGR03199 pucC xanthine dehydr 95.0 0.014 2.9E-07 53.6 2.1 95 119-224 1-109 (264)
41 TIGR02969 mam_aldehyde_ox alde 94.9 0.096 2.1E-06 58.3 8.7 147 114-284 237-414 (1330)
42 COG1319 CoxM Aerobic-type carb 94.0 0.098 2.1E-06 48.6 5.4 104 113-226 3-119 (284)
43 PLN00192 aldehyde oxidase 92.9 0.27 5.8E-06 55.0 7.4 107 112-225 232-353 (1344)
44 COG4630 XdhA Xanthine dehydrog 91.7 0.47 1E-05 45.6 6.4 105 110-225 200-315 (493)
45 TIGR00178 monomer_idh isocitra 57.6 75 0.0016 32.7 9.3 134 119-268 308-460 (741)
46 cd07033 TPP_PYR_DXS_TK_like Py 42.5 41 0.0009 27.9 4.3 30 113-146 124-153 (156)
47 COG4981 Enoyl reductase domain 37.7 45 0.00098 34.0 4.2 44 110-156 149-198 (717)
48 PF03614 Flag1_repress: Repres 36.2 2.7E+02 0.0058 23.6 8.1 35 115-153 8-43 (165)
49 PF04472 DUF552: Protein of un 34.7 66 0.0014 23.2 3.8 20 115-134 2-21 (73)
50 PF02601 Exonuc_VII_L: Exonucl 33.1 63 0.0014 30.1 4.4 41 111-151 40-88 (319)
51 PRK00286 xseA exodeoxyribonucl 29.8 53 0.0011 32.2 3.4 55 94-150 141-204 (438)
52 cd06397 PB1_UP1 Uncharacterize 29.8 1.2E+02 0.0025 22.9 4.3 38 241-280 40-77 (82)
53 PRK04322 peptidyl-tRNA hydrola 26.6 1.3E+02 0.0029 23.8 4.6 37 101-143 38-74 (113)
54 cd01760 RBD Ubiquitin-like dom 24.9 1.1E+02 0.0024 22.3 3.5 26 182-207 12-38 (72)
55 PLN02683 pyruvate dehydrogenas 24.5 4.6E+02 0.0099 25.1 8.6 84 113-205 165-256 (356)
56 cd07036 TPP_PYR_E1-PDHc-beta_l 24.4 1.3E+02 0.0027 25.6 4.3 31 112-146 134-164 (167)
57 KOG0430 Xanthine dehydrogenase 24.3 1.9E+02 0.0041 32.2 6.4 104 111-224 212-331 (1257)
58 PF02779 Transket_pyr: Transke 24.1 1.5E+02 0.0032 25.1 4.8 33 114-148 139-171 (178)
59 smart00861 Transket_pyr Transk 21.7 1.5E+02 0.0033 24.5 4.3 21 114-134 134-154 (168)
60 smart00455 RBD Raf-like Ras-bi 21.0 1.4E+02 0.0031 21.4 3.4 26 182-207 12-38 (70)
61 PRK09212 pyruvate dehydrogenas 20.2 5.4E+02 0.012 24.2 8.2 84 113-205 142-229 (327)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.2e-45 Score=363.50 Aligned_cols=241 Identities=61% Similarity=0.953 Sum_probs=218.4
Q ss_pred hhHHHHHHHHHHHhhhccccccccccCchhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHH
Q 022399 53 NNMLFIRSFMVLFLCCITVKINLCFSGIPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVK 130 (298)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk 130 (298)
.....+++++++++++.+.....|++........+.+.+++.+| ++..+++||++.+...|.+|++|+|++||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr 82 (525)
T PLN02441 3 SLMLSLRLLLILFLSSLTSSVGLCSSPSSLLPKLLSLDGHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVR 82 (525)
T ss_pred chHHHHHHHHHHHHHHhhhccCcccCcccccccccccCceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHH
Confidence 44566899999999999999888876333333334468999988 7888999999999999999999999999999999
Q ss_pred HHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCC-----eEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc
Q 022399 131 HIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGP-----KMQVYAENSFYVDVSGGELWINILHESVKYGLA 205 (298)
Q Consensus 131 ~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i-----~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~ 205 (298)
.|++ +.++++|++||+|||+.|++...+|++|||++||++ .++++.+. .+|+|+||++|.++++++.++|++
T Consensus 83 ~A~~--~~~~~~V~~rGgGHS~~G~a~~~~GivIdms~Ln~i~~~~~ii~vd~~~-~~VtV~aG~~~~dv~~~l~~~Gla 159 (525)
T PLN02441 83 AAYG--SSSPLTVAARGHGHSLNGQAQAPGGVVVDMRSLRGGVRGPPVIVVSGDG-PYVDVSGGELWIDVLKATLKHGLA 159 (525)
T ss_pred HHhh--ccCCceEEEECCCcCCCCCccCCCeEEEECCCCCCcCccCceEEEcCCC-CEEEEcCCCCHHHHHHHHHHCCCc
Confidence 9973 127899999999999999999888999999999992 26788777 899999999999999999999999
Q ss_pred cccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeE
Q 022399 206 PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLE 285 (298)
Q Consensus 206 ~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~ 285 (298)
|++++++..+||||+++++|+|+++++||.+.|+|.++|||+++|++++|++++|+|||||++||+|+|||||++||+++
T Consensus 160 P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~ 239 (525)
T PLN02441 160 PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGLGQFGIITRARIALE 239 (525)
T ss_pred cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeeec
Q 022399 286 PAPDMVKANYH 296 (298)
Q Consensus 286 p~~~~~~~~~i 296 (298)
|+|+.++|+++
T Consensus 240 Pap~~v~~~~~ 250 (525)
T PLN02441 240 PAPKRVRWIRV 250 (525)
T ss_pred ecCCceEEEEE
Confidence 99999999764
No 2
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=4.1e-44 Score=336.93 Aligned_cols=229 Identities=56% Similarity=0.888 Sum_probs=198.5
Q ss_pred HHHHHHHHhhhccccccccccCchhhhccc--cCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHH
Q 022399 58 IRSFMVLFLCCITVKINLCFSGIPYSLKTL--TLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIW 133 (298)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~c~~~~~~l~~l--~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~ 133 (298)
+++|++.++++.....+.|...+++..+.+ .+.+++.++ ..+++.+||+.+.+..|.+|++|+|+|||++++|+|+
T Consensus 5 ~~lflI~~l~~i~~~~p~~~ks~~~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~ 84 (505)
T KOG1231|consen 5 LRLFLITLLSIIKLITPVITKSSESLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCN 84 (505)
T ss_pred HHHHHHHHHHHHhcccchhhccCcchhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHh
Confidence 355566666666555554444444444444 478888888 5889999999999999999999999999999999999
Q ss_pred HhCCCCCceEEEeCCCcCCCCCccC-CCeEEEEcCC---CCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccC
Q 022399 134 EMGSHSELTVAARGHGHSLQGQAQA-HQGVVINMES---LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSW 209 (298)
Q Consensus 134 ~~~~~~~~~v~vrGgGhs~~g~~~~-~~gvvIdm~~---l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~ 209 (298)
..+ .++||++||+|||+.|++.+ .+|+||.|+. ++++ -.+..++ .+|+|+||..|.||++++.++||+|..|
T Consensus 85 ~~~--s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~-~~~~~~~-~yvdV~~g~~Widll~~t~e~GL~p~sw 160 (505)
T KOG1231|consen 85 DYG--SNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDV-PVLVVDD-LYVDVSAGTLWIDLLDYTLEYGLSPFSW 160 (505)
T ss_pred ccC--CcceeeccCCcccccCccccCCCCeEEEEehhhccCCC-ceeeccc-ceEEeeCChhHHHHHHHHHHcCCCccCc
Confidence 822 38999999999999999998 8998887765 3443 2334444 7999999999999999999999999999
Q ss_pred CCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeEeCCC
Q 022399 210 TDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPD 289 (298)
Q Consensus 210 ~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~ 289 (298)
++|...||||+++|+|+|+++++||++.+||.+++||+++||+++|+++.|++||+++.||+|+||||||||++|+|+|+
T Consensus 161 tDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 161 TDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPK 240 (505)
T ss_pred CCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeeccCcceeeEEEEEEEeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred c
Q 022399 290 M 290 (298)
Q Consensus 290 ~ 290 (298)
+
T Consensus 241 ~ 241 (505)
T KOG1231|consen 241 R 241 (505)
T ss_pred c
Confidence 4
No 3
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=9.8e-36 Score=293.27 Aligned_cols=188 Identities=18% Similarity=0.311 Sum_probs=174.4
Q ss_pred hhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcC
Q 022399 99 HNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYA 178 (298)
Q Consensus 99 ~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~ 178 (298)
...++||++++...|..+++|+|++||+++|+.|++ ++.+|+++|+|||+.+.+.. ++.+|||++||++ +++|.
T Consensus 48 ~~~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~----~g~~Vr~~GsGhS~sg~a~t-~g~lldL~~ln~V-l~vD~ 121 (541)
T TIGR01676 48 LHTVSNWSGTHEVLTRTFHQPEAIEELEGIVKQANE----KKARIRPVGSGLSPNGIGLS-RAGMVNLALMDKV-LEVDE 121 (541)
T ss_pred cccccccCCccccCcceEECCCCHHHHHHHHHHHHH----cCCcEEEECCCcCCCCcccC-CCeEEEhhhCCCC-EEEcC
Confidence 345789999999999999999999999999999999 99999999999999998887 4568999999998 89999
Q ss_pred CCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCC
Q 022399 179 ENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK 258 (298)
Q Consensus 179 ~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~ 258 (298)
++ .+|+|+||+++.+|.+.|.++|++++..+++..+||||+++++++| .+.+||.+.|+|+++++|+++|++++|+++
T Consensus 122 ~~-~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHG-tg~~~G~l~d~V~~l~lVta~G~vv~~s~~ 199 (541)
T TIGR01676 122 EK-KRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHG-TGAKLPPIDEQVIAMKLVTPAKGTIEISKD 199 (541)
T ss_pred CC-CEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcC-CCCCCCCHHHhEEEEEEEECCCCEEEECCC
Confidence 88 8999999999999999999999999888999999999999987655 466899999999999999999999999999
Q ss_pred CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeee
Q 022399 259 QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKAN 294 (298)
Q Consensus 259 ~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~ 294 (298)
+++|||||+++|+|+|||||++||+++|+++.+...
T Consensus 200 ~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~ 235 (541)
T TIGR01676 200 KDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHT 235 (541)
T ss_pred CCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEE
Confidence 999999999999999999999999999999765443
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.5e-35 Score=292.90 Aligned_cols=209 Identities=19% Similarity=0.280 Sum_probs=186.2
Q ss_pred hhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccC
Q 022399 81 PYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA 158 (298)
Q Consensus 81 ~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~ 158 (298)
.++|+.+...+++.++ ....|++|+...+...|.+|++|+|++||+++|++|++ +++||.+||+||++.|++.+
T Consensus 22 ~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~----~~ipv~~rG~Gt~~~gg~~~ 97 (499)
T PRK11230 22 LMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHR----LRVPVVARGAGTGLSGGALP 97 (499)
T ss_pred HHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHH----cCCeEEEECCCcCcCCCccc
Confidence 3467666667788887 66788899876678899999999999999999999999 99999999999999887765
Q ss_pred -CCeEEEEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc-cccCCCCCCceeecccccCCcCCCccccCcc
Q 022399 159 -HQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQ 236 (298)
Q Consensus 159 -~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~-~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~ 236 (298)
.+|++|||++||+| +++|+++ .+|+||||++|.+|.++|.++|+. ++.+++...+||||++++++.|..+.+||..
T Consensus 98 ~~~gividl~~ln~I-~~id~~~-~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~ 175 (499)
T PRK11230 98 LEKGVLLVMARFNRI-LDINPVG-RRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLT 175 (499)
T ss_pred CCCcEEEEcccCCCc-eEEcCCC-CEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCCh
Confidence 47899999999997 7999888 899999999999999999999998 5555566678999999977778888999999
Q ss_pred cccEeEEEEEccCCeEEEecCC----CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeeee
Q 022399 237 ISNVHQLEVVTGKGEIINCSEK----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKANY 295 (298)
Q Consensus 237 ~d~V~~levV~~~Gev~~~s~~----~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~~ 295 (298)
.|+|.++++|++||++++++.. .++||+|+++||+|+|||||++|||+.|.|+...++.
T Consensus 176 ~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~ 238 (499)
T PRK11230 176 VHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLL 238 (499)
T ss_pred hhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEE
Confidence 9999999999999999999854 4789999999999999999999999999998866653
No 5
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=5.3e-35 Score=284.63 Aligned_cols=185 Identities=22% Similarity=0.392 Sum_probs=171.9
Q ss_pred hhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCc
Q 022399 102 ARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENS 181 (298)
Q Consensus 102 ~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~ 181 (298)
+++|++++...|.++++|+|++||+++|+.|++ ++.+|+++|+|||+.+.+.. +|++|||++|+++ +++|+++
T Consensus 4 w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~----~~~~v~v~G~GhS~s~~~~~-~gvvIdl~~l~~i-~~id~~~- 76 (438)
T TIGR01678 4 FQNWAKTYSASPEVYYQPTSVEEVREVLALARE----QKKKVKVVGGGHSPSDIACT-DGFLIHLDKMNKV-LQFDKEK- 76 (438)
T ss_pred EEeCCCcccCCCCEEEecCCHHHHHHHHHHHHH----CCCeEEEECCCCCCCCCccC-CeEEEEhhhcCCc-eEEcCCC-
Confidence 578999899999999999999999999999999 99999999999999887765 7899999999997 7999887
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCc
Q 022399 182 FYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNS 261 (298)
Q Consensus 182 ~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~ 261 (298)
.+|+|+||+++.+|.+.|.++|++++..++++.+||||+++++++| .+.+||.++|+|.++++|+++|+++++++++++
T Consensus 77 ~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG-~~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~ 155 (438)
T TIGR01678 77 KQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHG-SSIKHGILATQVVALTIMTADGEVLECSEERNA 155 (438)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCC-CccccCcHHhhEEEEEEEcCCCcEEEeCCCCCh
Confidence 8999999999999999999999998888889999999999877655 578999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCceEEEEEEEEeEeCCCceeee
Q 022399 262 ELFHSVLGGLGQFGIITRARISLEPAPDMVKAN 294 (298)
Q Consensus 262 dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~ 294 (298)
|+||+.++++|++||||++||+++|..+.....
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~ 188 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQETS 188 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEEE
Confidence 999999999999999999999999988765544
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.8e-35 Score=283.92 Aligned_cols=181 Identities=20% Similarity=0.324 Sum_probs=165.9
Q ss_pred hhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCc
Q 022399 102 ARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENS 181 (298)
Q Consensus 102 ~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~ 181 (298)
+++|++.+...|.++++|+|++||+++|+.|++ +|+++|+|||+.+.+.. +|++|||++||++ +++|+++
T Consensus 1 w~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~-------~v~~~G~Ghs~~~~~~~-~g~~idl~~l~~i-~~~d~~~- 70 (419)
T TIGR01679 1 WSNWSGEQVAAPSAIVRPTDEGELADVIAQAAK-------PVRAVGSGHSFTDLACT-DGTMISLTGLQGV-VDVDQPT- 70 (419)
T ss_pred CcCCCCCccCCCCeEECCCCHHHHHHHHHHhCC-------CEEEEeCCCCCCCcccC-CCEEEEhhHcCCc-eeecCCC-
Confidence 468999889999999999999999999998863 69999999999887665 6899999999997 7999888
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCc
Q 022399 182 FYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNS 261 (298)
Q Consensus 182 ~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~ 261 (298)
.+|+|+||++|.+|.+.|.++|+.++..++...+||||+++++++| .+.+||.+.|+|+++++|++||++++|++++++
T Consensus 71 ~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG-~g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~ 149 (419)
T TIGR01679 71 GLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHG-TGVRFQALHARIVSLRLVTAGGKVLDLSEGDDQ 149 (419)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCC-CCccCCchhhhEEEEEEEcCCCCEEEEcCCCCH
Confidence 8999999999999999999999998888888889999999987655 567999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCceEEEEEEEEeEeCCCceee
Q 022399 262 ELFHSVLGGLGQFGIITRARISLEPAPDMVKA 293 (298)
Q Consensus 262 dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~ 293 (298)
|||||++||+|+|||||++||+++|.++....
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~ 181 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRR 181 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEE
Confidence 99999999999999999999999999865443
No 7
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=2.6e-34 Score=286.26 Aligned_cols=199 Identities=23% Similarity=0.344 Sum_probs=173.4
Q ss_pred CCCeEecc--chhhhhhhcCCcC--CCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccC-CCeEE
Q 022399 89 LDGHLNFD--EVHNAARDFGNRY--QLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVV 163 (298)
Q Consensus 89 ~~g~v~~~--~~~~~~~~~~~~~--~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~-~~gvv 163 (298)
+.+.+.+| ....|.+||...+ ...|.+|++|+|++||+++|++|++ +++|+.+||+|||+.|++.+ ++|++
T Consensus 106 l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~----~~ipv~prGgGts~~G~~~~~~ggiv 181 (555)
T PLN02805 106 LQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNK----YKVPIVPYGGATSIEGHTLAPHGGVC 181 (555)
T ss_pred cCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHH----CCCcEEEECCCCCCCCCccCCCCEEE
Confidence 34568887 4556677764322 2579999999999999999999999 99999999999999988775 57999
Q ss_pred EEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEE
Q 022399 164 INMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQL 243 (298)
Q Consensus 164 Idm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~l 243 (298)
|||++||+| +++|.++ .+|+||||++|.+|+++|.++|+.++..|+ +.+||||.++++++|..+.+||.+.|+|.++
T Consensus 182 Idl~~mn~I-~~id~~~-~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~l 258 (555)
T PLN02805 182 IDMSLMKSV-KALHVED-MDVVVEPGIGWLELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVISL 258 (555)
T ss_pred EEccCCCCe-EEEeCCC-CEEEEeCCcCHHHHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHhEEEE
Confidence 999999997 7899888 899999999999999999999998554454 5689999999888888899999999999999
Q ss_pred EEEccCCeEEEecCC-----CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeee
Q 022399 244 EVVTGKGEIINCSEK-----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKAN 294 (298)
Q Consensus 244 evV~~~Gev~~~s~~-----~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~ 294 (298)
|+|++||++++++.. .++||+|+++||+|+|||||+++|++.|.|+.....
T Consensus 259 evVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~ 314 (555)
T PLN02805 259 KVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVA 314 (555)
T ss_pred EEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEE
Confidence 999999999987532 358999999999999999999999999999876544
No 8
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=7.3e-34 Score=282.74 Aligned_cols=188 Identities=21% Similarity=0.235 Sum_probs=170.4
Q ss_pred hhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeC-CCcCCCCCccCC---CeEEEEcCCCCCCe
Q 022399 98 VHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARG-HGHSLQGQAQAH---QGVVINMESLQGPK 173 (298)
Q Consensus 98 ~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrG-gGhs~~g~~~~~---~gvvIdm~~l~~i~ 173 (298)
..+++++|++++...|.++++|+|++||+++|+.|++ +++||+++| +||++.+.+... +|++|||++||++
T Consensus 17 ~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~----~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~i- 91 (557)
T TIGR01677 17 VSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATA----AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHV- 91 (557)
T ss_pred eecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHH----CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCC-
Confidence 4567899999999999999999999999999999999 999999995 699987665442 4699999999998
Q ss_pred EEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCc-cccCcccccEeEEEEEccCC--
Q 022399 174 MQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQA-FQHGPQISNVHQLEVVTGKG-- 250 (298)
Q Consensus 174 i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~-~~~G~~~d~V~~levV~~~G-- 250 (298)
+++|+++ .+|+|+||+++.+|.+.|.++|++++..++...+||||+++++++|... .+||.+.|+|+++++|+++|
T Consensus 92 l~iD~~~-~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a 170 (557)
T TIGR01677 92 VAVDATA-MTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAA 170 (557)
T ss_pred EEEeCCC-CEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcc
Confidence 8999988 8999999999999999999999998888888889999999987766554 37889999999999999998
Q ss_pred ----eEEEecCCCCchhHHHHhcCCCCceEEEEEEEEeEeCCCce
Q 022399 251 ----EIINCSEKQNSELFHSVLGGLGQFGIITRARISLEPAPDMV 291 (298)
Q Consensus 251 ----ev~~~s~~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~ 291 (298)
+++++++.+++|||||++||+|+|||||++||+++|.++..
T Consensus 171 ~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 171 EGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred cCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccce
Confidence 89999999999999999999999999999999999997643
No 9
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.1e-33 Score=271.20 Aligned_cols=197 Identities=26% Similarity=0.343 Sum_probs=176.3
Q ss_pred CeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCC
Q 022399 91 GHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES 168 (298)
Q Consensus 91 g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~ 168 (298)
..+.++ ....+..||. .....|.+++.|+|++||+++|++|++ +++||.+||+||++.|++.+.++|+|||++
T Consensus 9 ~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~----~~~~v~prG~gts~~g~~~~~~gvvl~l~~ 83 (459)
T COG0277 9 LNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANE----NGIPVVPRGGGTSLSGGAVPDGGVVLDLSR 83 (459)
T ss_pred cceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHH----cCCeEEEECCCCCccccccCCCcEEEEchh
Confidence 335555 5566777777 577899999999999999999999999 999999999999999988774599999999
Q ss_pred CCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCC-CceeecccccCCcCCCccccCcccccEeEEEEEc
Q 022399 169 LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYL-HLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVT 247 (298)
Q Consensus 169 l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~-~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~ 247 (298)
||+| +++|+++ .+|+|+||+++.+|.++|.++|+.++..|+.. .+||||.++++++|..+.+||.+.|+|+++++|+
T Consensus 84 mn~i-~~id~~~-~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~ 161 (459)
T COG0277 84 LNRI-LEIDPED-GTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVL 161 (459)
T ss_pred hcch-hccCcCC-CEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEc
Confidence 9996 5899888 89999999999999999999999977667665 8999999999888889999999999999999999
Q ss_pred cCCeEEEecCC-----CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeee
Q 022399 248 GKGEIINCSEK-----QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKAN 294 (298)
Q Consensus 248 ~~Gev~~~s~~-----~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~ 294 (298)
+||++++++.+ ..+||++++.||+|++||||++++++.|.|+.....
T Consensus 162 ~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~ 213 (459)
T COG0277 162 PDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATA 213 (459)
T ss_pred CCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEE
Confidence 99999999875 347999999999999999999999999998765443
No 10
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=2e-32 Score=271.70 Aligned_cols=187 Identities=20% Similarity=0.306 Sum_probs=172.4
Q ss_pred chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEE
Q 022399 97 EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQV 176 (298)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i 176 (298)
+-...++||+++..+.|.+++.|+|++||+++|+.|++ ++.+|+++|+|||+.+....+ +.+|||++|+++ +++
T Consensus 81 ~~~~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~----~g~~VrvvGsGhS~~~l~~td-~glIdL~~l~~I-l~v 154 (573)
T PLN02465 81 EDLHTVSNWSGTHEVQTRRYHQPESLEELEDIVKEAHE----KGRRIRPVGSGLSPNGLAFSR-EGMVNLALMDKV-LEV 154 (573)
T ss_pred ccchhccccccccCCCCCEEEEeCCHHHHHHHHHHHHH----cCCcEEEEcCCcCCCCeeeCC-CEEEECcCCCCc-EEE
Confidence 33557789999999999999999999999999999999 999999999999999888774 457899999997 799
Q ss_pred cCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEec
Q 022399 177 YAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCS 256 (298)
Q Consensus 177 ~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s 256 (298)
|+++ .+|+|+||+++.+|.+.|.++|++++..+++..+||||+++++ .+|.+.++|.+.|+|+++++|+++|++++++
T Consensus 155 D~e~-~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstG-tHGtG~~~g~i~d~V~~l~lVta~G~vv~~s 232 (573)
T PLN02465 155 DKEK-KRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVG-AHGTGARIPPIDEQVVSMKLVTPAKGTIELS 232 (573)
T ss_pred eCCC-CEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCC-CCCcCCCcCcHhheEEEEEEEECCCCEEEEC
Confidence 9888 8999999999999999999999998888888899999999865 5666778999999999999999999999999
Q ss_pred CCCCchhHHHHhcCCCCceEEEEEEEEeEeCCCce
Q 022399 257 EKQNSELFHSVLGGLGQFGIITRARISLEPAPDMV 291 (298)
Q Consensus 257 ~~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~ 291 (298)
+++++|+|++.++++|.+||||++||+++|.++..
T Consensus 233 ~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 233 KEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred CCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceE
Confidence 99999999999999999999999999999999754
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.9e-31 Score=258.47 Aligned_cols=174 Identities=24% Similarity=0.374 Sum_probs=156.4
Q ss_pred EEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccC-CCeEEEEcCCCCCCeEEEcCCCceEEEEcCCccHHH
Q 022399 116 VLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVVINMESLQGPKMQVYAENSFYVDVSGGELWIN 194 (298)
Q Consensus 116 vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~-~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~~~ 194 (298)
|++|+|++||+++|+.|++ +++||.++|+|||+.|.+.+ +++++|||++||+| +++|+++ .+|+||||+++.+
T Consensus 1 Vv~P~s~eev~~iv~~a~~----~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i-~~id~~~-~~v~veaGv~~~~ 74 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHE----HRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKI-LEIDVVN-LTAVVQPGVRNLE 74 (413)
T ss_pred CCCCCCHHHHHHHHHHHHH----cCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCce-eEEcCCC-CEEEEcCCccHHH
Confidence 5789999999999999999 99999999999999877665 47899999999997 7999887 8999999999999
Q ss_pred HHHHHHhCCCcc-ccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCC-----CCchhHHHHh
Q 022399 195 ILHESVKYGLAP-KSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK-----QNSELFHSVL 268 (298)
Q Consensus 195 L~~~l~~~Gl~~-~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~-----~~~dLf~a~~ 268 (298)
|.++|.++|+.. +.+++....||||++++++.|..+.+||.+.|+|.++++|++||++++++.+ .++|+++.+.
T Consensus 75 l~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~ 154 (413)
T TIGR00387 75 LEQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFV 154 (413)
T ss_pred HHHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcc
Confidence 999999999984 4555566789999999777777889999999999999999999999998753 3579999999
Q ss_pred cCCCCceEEEEEEEEeEeCCCceeeee
Q 022399 269 GGLGQFGIITRARISLEPAPDMVKANY 295 (298)
Q Consensus 269 gs~G~~GIIt~~tl~l~p~~~~~~~~~ 295 (298)
|+.|+|||||+++||++|.|+...+..
T Consensus 155 Gs~GtlGiit~~~lkl~p~p~~~~~~~ 181 (413)
T TIGR00387 155 GSEGTLGIVTEATLKLLPKPENIVVAL 181 (413)
T ss_pred cCCccceEEEEEEEEeecCCCccEEEE
Confidence 999999999999999999998765543
No 12
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=1.9e-30 Score=245.54 Aligned_cols=167 Identities=15% Similarity=0.219 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCceEEEeCCCcC-CCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHH
Q 022399 121 SVSDIATTVKHIWEMGSHSELTVAARGHGHS-LQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHES 199 (298)
Q Consensus 121 s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs-~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l 199 (298)
.++||+++|++|++ +++||.++|+||+ ..+.. .++++|||++||+| +++|+++ .+|+|+||+++.||.++|
T Consensus 3 ~~~ev~~~v~~A~~----~~~~v~~~GgGt~~~~g~~--~~~~vldl~~ln~I-le~d~~~-~~vtV~AG~~l~el~~~L 74 (352)
T PRK11282 3 ISAALLERVRQAAA----DGTPLRIRGGGSKDFYGRA--LAGEVLDTRAHRGI-VSYDPTE-LVITARAGTPLAELEAAL 74 (352)
T ss_pred hHHHHHHHHHHHHH----CCCeEEEECCCCCCCCCCC--CCCeEEEcccCCCc-EEEcCCC-CEEEECCCCCHHHHHHHH
Confidence 47999999999999 9999999999975 44553 25789999999998 8999988 899999999999999999
Q ss_pred HhCCCcccc-CCCCC-CceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCC-----CCchhHHHHhcCCC
Q 022399 200 VKYGLAPKS-WTDYL-HLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEK-----QNSELFHSVLGGLG 272 (298)
Q Consensus 200 ~~~Gl~~~~-~~~~~-~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~-----~~~dLf~a~~gs~G 272 (298)
.++|+.++. ++++. ..||||.++++++|..+.+||..+|+|+++++|+++|++++++.+ .++||||+++||+|
T Consensus 75 ~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~G 154 (352)
T PRK11282 75 AEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLG 154 (352)
T ss_pred HHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCc
Confidence 999987443 33443 489999999988899999999999999999999999999999764 46899999999999
Q ss_pred CceEEEEEEEEeEeCCCceeeee
Q 022399 273 QFGIITRARISLEPAPDMVKANY 295 (298)
Q Consensus 273 ~~GIIt~~tl~l~p~~~~~~~~~ 295 (298)
+|||||+++||++|.|+...++.
T Consensus 155 tLGVitevtlkl~P~p~~~~t~~ 177 (352)
T PRK11282 155 TLGVLLEVSLKVLPRPRAELTLR 177 (352)
T ss_pred hhhhheEEEEEEEecCceEEEEE
Confidence 99999999999999998766543
No 13
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.96 E-value=3.9e-28 Score=237.16 Aligned_cols=205 Identities=15% Similarity=0.142 Sum_probs=173.7
Q ss_pred hhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccC
Q 022399 81 PYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA 158 (298)
Q Consensus 81 ~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~ 158 (298)
.++|.++..+++|.++ ....+.+||.. ....|.+|++|+|++||+++|+.|++ +++||.+||+|+++.|++.+
T Consensus 6 i~~L~~IvG~~~Vltd~~~l~~Y~~D~r~-~~g~P~AVV~P~SteEVa~IVklC~e----~~vPVIPRGgGTGLtGGAvP 80 (564)
T PRK11183 6 INELTRIVGSSHVLTDPAKTERYRKGFRS-GQGDALAVVFPGTLLELWRVLQACVA----ADKIIIMQAANTGLTGGSTP 80 (564)
T ss_pred HHHHHHhcCcccEecCHHHHHHhccCccc-cCCCCCEEEecCCHHHHHHHHHHHHH----cCCeEEEeCCCcccccCccc
Confidence 4567777778889888 67788899875 67889999999999999999999999 99999999999999999887
Q ss_pred CC------eEEEEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccC--CCCCCceeecccccCCcCCCc
Q 022399 159 HQ------GVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSW--TDYLHLTVGGTLSNAGISGQA 230 (298)
Q Consensus 159 ~~------gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~--~~~~~~tVGG~v~naG~g~~~ 230 (298)
.+ +|||||++||+| +++|. + .+++|+||+++.+|.++|.++|+.|+.. +++..+||||.++|++.|...
T Consensus 81 ~~~~~dR~gVVIsl~RMNrI-leID~-~-~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~v 157 (564)
T PRK11183 81 NGNDYDRDIVIISTLRLDKI-QLLNN-G-KQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALV 157 (564)
T ss_pred CCCCCcCCEEEEEhhHcCCc-EEECC-C-CeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhh
Confidence 42 799999999998 88885 4 5899999999999999999999987663 334466899999966557788
Q ss_pred cccCcccccEeEEEEEccCCeE-------EEecCC----------CCc--------------------------------
Q 022399 231 FQHGPQISNVHQLEVVTGKGEI-------INCSEK----------QNS-------------------------------- 261 (298)
Q Consensus 231 ~~~G~~~d~V~~levV~~~Gev-------~~~s~~----------~~~-------------------------------- 261 (298)
.+||.+.++++. ++|+++|++ +....+ .++
T Consensus 158 lRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parf 236 (564)
T PRK11183 158 QRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARF 236 (564)
T ss_pred eEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccc
Confidence 888889999998 999999999 443221 123
Q ss_pred --hhHHHH--hcCCCCceEEEEEEEEeEeCCCceeeee
Q 022399 262 --ELFHSV--LGGLGQFGIITRARISLEPAPDMVKANY 295 (298)
Q Consensus 262 --dLf~a~--~gs~G~~GIIt~~tl~l~p~~~~~~~~~ 295 (298)
|+...+ .||.|++||| ++++++.|.|+..+.+.
T Consensus 237 naDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ 273 (564)
T PRK11183 237 NADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFY 273 (564)
T ss_pred cCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEE
Confidence 888888 9999999999 99999999998766544
No 14
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=2.4e-28 Score=202.04 Aligned_cols=138 Identities=33% Similarity=0.500 Sum_probs=126.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcCCccH
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGELW 192 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~ 192 (298)
|.+|++|+|++||++++++|++ ++++++++|+||++.+.+...++++|||++|+++ +++|+++ .+++|+||++|
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~----~~~~v~~~g~G~~~~~~~~~~~~ivi~~~~l~~i-~~id~~~-~~v~v~aG~~~ 74 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANE----NGVPVRVRGGGHSWTGQSSDEGGIVIDMSRLNKI-IEIDPEN-GTVTVGAGVTW 74 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHH----TTSEEEEESSSTTSSSTTSSTTEEEEECTTCGCE-EEEETTT-TEEEEETTSBH
T ss_pred CcEEEEeCCHHHHHHHHHHHHH----cCCcEEEEcCCCCcccccccCCcEEEeecccccc-ccccccc-eeEEEeccccc
Confidence 7899999999999999999999 9999999999999997777669999999999997 8999887 89999999999
Q ss_pred HHHHHHHHhCCCccc-cCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEec
Q 022399 193 INILHESVKYGLAPK-SWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCS 256 (298)
Q Consensus 193 ~~L~~~l~~~Gl~~~-~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s 256 (298)
.||+++|.++|+.++ ........||||+++++++|..+..||...|+|.++++|++||++++++
T Consensus 75 ~~l~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 75 GDLYEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred hhcccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999998744 4555667899999999888999999999999999999999999999985
No 15
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.94 E-value=2.6e-26 Score=213.68 Aligned_cols=176 Identities=25% Similarity=0.319 Sum_probs=145.8
Q ss_pred CCCeEecc-chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcC
Q 022399 89 LDGHLNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINME 167 (298)
Q Consensus 89 ~~g~v~~~-~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~ 167 (298)
.++++..+ ++..+ +.|. +...|.++++|+|++||++++++|++ +++|+.++|+|||+...+.+.+|++|+|+
T Consensus 9 ~~~~~~~~~~l~~~-~t~~--igg~a~~vv~P~s~edv~~~v~~a~~----~~~p~~v~GgGsnll~~d~g~~gvvI~l~ 81 (298)
T PRK13905 9 LRGRLLENEPLARY-TSFR--VGGPADYLVEPADIEDLQEFLKLLKE----NNIPVTVLGNGSNLLVRDGGIRGVVIRLG 81 (298)
T ss_pred CCceeecCCCcccc-ceee--cCceEeEEEeCCCHHHHHHHHHHHHH----cCCCEEEEeCCceEEecCCCcceEEEEec
Confidence 34455544 33222 3333 67889999999999999999999999 99999999999998766555579999999
Q ss_pred C-CCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccE
Q 022399 168 S-LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNV 240 (298)
Q Consensus 168 ~-l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V 240 (298)
+ |+. ++++. .+|+|+||+.|.+|.+++.++|+. +.++|+ ||||+++ |+|. || .++|+|
T Consensus 82 ~~l~~--i~~~~---~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG----TVGGai~~NaG~------~G~~~~d~v 146 (298)
T PRK13905 82 KGLNE--IEVEG---NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG----TVGGAVFMNAGA------YGGETADVL 146 (298)
T ss_pred CCcce--EEecC---CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc----chhHHHHHcCCc------CceEhheeE
Confidence 8 887 55543 589999999999999999999994 444444 9999999 6654 55 799999
Q ss_pred eEEEEEccCCeEEEecCCCCchhHHHHhcCCCC--ceEEEEEEEEeEeCCC
Q 022399 241 HQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQ--FGIITRARISLEPAPD 289 (298)
Q Consensus 241 ~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~--~GIIt~~tl~l~p~~~ 289 (298)
.++++|+++|++++++++ |++|+||++... +||||+++|+++|..+
T Consensus 147 ~~v~vv~~~G~~~~~~~~---e~~~~yR~s~~~~~~gII~~~~l~l~~~~~ 194 (298)
T PRK13905 147 ESVEVLDRDGEIKTLSNE---ELGFGYRHSALQEEGLIVLSATFQLEPGDK 194 (298)
T ss_pred EEEEEEeCCCCEEEEEHH---HcCCcCccccCCCCCEEEEEEEEEEcCCCH
Confidence 999999999999999765 999999998754 7999999999999854
No 16
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.93 E-value=2.3e-25 Score=210.53 Aligned_cols=185 Identities=21% Similarity=0.288 Sum_probs=165.0
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceE
Q 022399 104 DFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFY 183 (298)
Q Consensus 104 ~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~ 183 (298)
.|..+..++++.|-+|+|++||.++|+.|++ ++.++++.|.|||..+.... +|.+|++..||++ +++|++. .+
T Consensus 41 afPdr~~c~aanv~yP~teaeL~~lVa~A~~----a~~kirvVg~gHSp~~l~ct-dg~lisl~~lnkV-v~~dpe~-~t 113 (518)
T KOG4730|consen 41 AFPDRSTCKAANVNYPKTEAELVELVAAATE----AGKKIRVVGSGHSPSKLVCT-DGLLISLDKLNKV-VEFDPEL-KT 113 (518)
T ss_pred ccCchhhhhhcccCCCCCHHHHHHHHHHHHH----cCceEEEecccCCCCcceec-cccEEEhhhhccc-eeeCchh-ce
Confidence 4455567778888899999999999999999 99999999999999988887 6799999999998 9999998 89
Q ss_pred EEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCchh
Q 022399 184 VDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSEL 263 (298)
Q Consensus 184 V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~dL 263 (298)
|+|++|+++.+|.+++.+.|++++..|....++|||.++++.||.+..-|+...+.+.-..+..++|.+++++++.+||+
T Consensus 114 vTV~aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~ 193 (518)
T KOG4730|consen 114 VTVQAGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPEL 193 (518)
T ss_pred EEeccCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHH
Confidence 99999999999999999999999999999999999999998765555446666666666667778999999999999999
Q ss_pred HHHHhcCCCCceEEEEEEEEeEeCCCceeeee
Q 022399 264 FHSVLGGLGQFGIITRARISLEPAPDMVKANY 295 (298)
Q Consensus 264 f~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~~ 295 (298)
|.|++.|+|.+|||.++||+++|+.+......
T Consensus 194 F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~~ 225 (518)
T KOG4730|consen 194 FNAAKVSLGVLGVISQVTLSVVPAFKRSLTYV 225 (518)
T ss_pred HhhhhhcccceeEEEEEEEEEEecceeeeEEE
Confidence 99999999999999999999999988765443
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.92 E-value=1.3e-25 Score=207.98 Aligned_cols=209 Identities=19% Similarity=0.279 Sum_probs=187.0
Q ss_pred CchhhhccccCCCeEecc--chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCc
Q 022399 79 GIPYSLKTLTLDGHLNFD--EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQA 156 (298)
Q Consensus 79 ~~~~~l~~l~~~g~v~~~--~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~ 156 (298)
+..+.++++..+..+.++ +++.+.+||-+.+++....+++|+|++||++++++|++ +++.|.++||.+.+.|.+
T Consensus 54 ~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~----~kLAVVPQGGNTgLVGgS 129 (511)
T KOG1232|consen 54 KDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCND----RKLAVVPQGGNTGLVGGS 129 (511)
T ss_pred HHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHHHHHHHhhcc----ccEEEecCCCCcccccCc
Confidence 334456666677777776 88999999999999999999999999999999999999 999999999999999998
Q ss_pred cC-CCeEEEEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc-cccCCCCCCceeecccccCCcCCCccccC
Q 022399 157 QA-HQGVVINMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHG 234 (298)
Q Consensus 157 ~~-~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~-~~~~~~~~~~tVGG~v~naG~g~~~~~~G 234 (298)
.+ .+.||++|.+||++ .++|+-. ..+.++||+.++++..++.+.|+. |.+.+.-..+.|||.+++++.|-.-.|||
T Consensus 130 VPvfDEiVlsl~~mNKi-~sfDevs-Gil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYG 207 (511)
T KOG1232|consen 130 VPVFDEIVLSLGLMNKI-LSFDEVS-GILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYG 207 (511)
T ss_pred ccchHHHhhhhhhhccc-ccccccc-ceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEec
Confidence 88 68999999999998 8899887 899999999999999999999997 88899989999999999665577888999
Q ss_pred cccccEeEEEEEccCCeEEEec---C--CCCchhHHHHhcCCCCceEEEEEEEEeEeCCCceee
Q 022399 235 PQISNVHQLEVVTGKGEIINCS---E--KQNSELFHSVLGGLGQFGIITRARISLEPAPDMVKA 293 (298)
Q Consensus 235 ~~~d~V~~levV~~~Gev~~~s---~--~~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~ 293 (298)
...-+|+++|+|+|+|+++..- + ...+|+-+.+.|++|++||||.+.+-..|.|+.+..
T Consensus 208 sLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 208 SLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeE
Confidence 9999999999999999988643 2 245799999999999999999999999999987543
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=1.6e-24 Score=202.01 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=139.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
++..|.++++|+|++||++++++|++ +++|+.++|+|||+...+...+|++|+|++|++ ++++. .+++|+|
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~----~~ip~~v~GgGSNll~~d~g~~GvvI~l~~l~~--i~~~~---~~v~v~a 103 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANK----YNIPVTFLGNGSNVIIKDGGIRGITVSLIHITG--VTVTG---TTIVAQC 103 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHH----cCCCEEEEcCCeEEEEeCCCeeEEEEEeCCcCc--EEEeC---CEEEEEe
Confidence 67889999999999999999999999 999999999999998555545699999988988 66664 5899999
Q ss_pred CccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccCCeEEEecCCCCch
Q 022399 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGKGEIINCSEKQNSE 262 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~Gev~~~s~~~~~d 262 (298)
|+.|.+|.+++.++||. +.++|+ ||||++. |+|. || .+.|.+.++++++++|++++++++ |
T Consensus 104 G~~~~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NAGa------yG~~~~dvl~~v~vv~~~G~v~~~~~~---e 170 (305)
T PRK12436 104 GAAIIDVSRIALDHNLTGLEFACGIPG----SVGGALYMNAGA------YGGEISFVLTEAVVMTGDGELRTLTKE---A 170 (305)
T ss_pred CCcHHHHHHHHHHcCCccchhhcCCcc----chhHHHHhcCcc------chhehheeeeEEEEEeCCCCEEEEEHH---H
Confidence 99999999999999986 555666 9999999 6664 66 677888999999999999999887 8
Q ss_pred hHHHHhcCC--CCceEEEEEEEEeEeCCCc
Q 022399 263 LFHSVLGGL--GQFGIITRARISLEPAPDM 290 (298)
Q Consensus 263 Lf~a~~gs~--G~~GIIt~~tl~l~p~~~~ 290 (298)
+.|+||.+. ....||++++|++.+..+.
T Consensus 171 ~~f~YR~s~~~~~~~iil~a~~~l~~~~~~ 200 (305)
T PRK12436 171 FEFGYRKSVFANNHYIILEARFELEEGVYE 200 (305)
T ss_pred hcCcCCCCcCCCCCEEEEEEEEEEcCCCHH
Confidence 999999984 3357999999999987543
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=2.3e-24 Score=200.59 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=144.5
Q ss_pred cCCCeEeccchhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcC
Q 022399 88 TLDGHLNFDEVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINME 167 (298)
Q Consensus 88 ~~~g~v~~~~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~ 167 (298)
.+++++..+...+..+.|. +...|.++++|+|++||++++++|++ +++|+.++|+|||+...+...+|++|+++
T Consensus 13 ~~~~~~~~~~~l~~~tt~~--igg~a~~~v~p~~~edl~~~v~~a~~----~~ip~~vlGgGSNllv~d~g~~gvVI~l~ 86 (302)
T PRK14652 13 RVRGEVLRDAPLAPRTAVR--VGGPADLLVRPADPDALSALLRAVRE----LGVPLSILGGGANTLVADAGVRGVVLRLP 86 (302)
T ss_pred hhccccccCCCcccccEee--cCCcceEEEEcCCHHHHHHHHHHHHH----CCCcEEEEcCCcceeecCCCEeeEEEEec
Confidence 4555566553333334444 78999999999999999999999999 99999999999998755444469999997
Q ss_pred C-CCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccCcccccEe
Q 022399 168 S-LQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVH 241 (298)
Q Consensus 168 ~-l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G~~~d~V~ 241 (298)
+ ++. ++++ + .+++|+||+.|.+|.+++.++||. +.++|+ ||||++. |+| .+||.+.|+|.
T Consensus 87 ~~~~~--i~~~--~-~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNaG-----a~ggei~d~v~ 152 (302)
T PRK14652 87 QDFPG--ESTD--G-GRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNAG-----TKLGEMKDVVT 152 (302)
T ss_pred CCcce--EEec--C-CEEEEECCCcHHHHHHHHHHcCCcccccccCCCc----chhHHHHHcCC-----CCceEhhheEE
Confidence 7 444 4444 3 589999999999999999999996 555555 9999999 665 45778999999
Q ss_pred EEEEEccCCeEEEecCCCCchhHHHHhcCC-CCceEEEEEEEEeEeCCCc
Q 022399 242 QLEVVTGKGEIINCSEKQNSELFHSVLGGL-GQFGIITRARISLEPAPDM 290 (298)
Q Consensus 242 ~levV~~~Gev~~~s~~~~~dLf~a~~gs~-G~~GIIt~~tl~l~p~~~~ 290 (298)
++++|+++| ..+..++ |+.|+||.+. +..||||+++|++.|.++.
T Consensus 153 ~v~vv~~~G-~~~~~~~---e~~f~YR~s~~~~~~II~~a~~~L~~~~~~ 198 (302)
T PRK14652 153 AVELATADG-AGFVPAA---ALGYAYRTCRLPPGAVITRVEVRLRPGDVA 198 (302)
T ss_pred EEEEECCCC-cEEeehh---hcCcccceeccCCCeEEEEEEEEEecCCHH
Confidence 999999999 5566554 8999999975 4348999999999998754
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=6e-24 Score=198.27 Aligned_cols=174 Identities=19% Similarity=0.276 Sum_probs=144.6
Q ss_pred eEecc-chhhhhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCC
Q 022399 92 HLNFD-EVHNAARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQ 170 (298)
Q Consensus 92 ~v~~~-~~~~~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~ 170 (298)
.+..+ ++..+++. . ....|.++++|+|++||++++++|++ +++|+.++|+|||+...+...+|++|++++|+
T Consensus 18 ~v~~~~~L~~~tt~-~--iGG~A~~~v~p~~~edv~~~v~~a~~----~~ip~~vlGgGSNll~~d~g~~GvvI~l~~l~ 90 (307)
T PRK13906 18 KIKVDEPLKRYTYT-K--TGGNADFYITPTKNEEVQAVVKYAYQ----NEIPVTYLGNGSNIIIREGGIRGIVISLLSLD 90 (307)
T ss_pred eeecCCccccceEc-C--cCceeEEEEEcCCHHHHHHHHHHHHH----cCCCEEEEcCceeEeecCCCcceEEEEecCcc
Confidence 45555 33344333 2 45789999999999999999999999 99999999999999865555579999998899
Q ss_pred CCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCcccc-CcccccEeEEE
Q 022399 171 GPKMQVYAENSFYVDVSGGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQH-GPQISNVHQLE 244 (298)
Q Consensus 171 ~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~-G~~~d~V~~le 244 (298)
+ +++++ .+++|+||+.|.+|.+++.++||. +.++|+ ||||++. |+|. | |.++|+|.+++
T Consensus 91 ~--i~~~~---~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG----tVGGav~mNaGa------yGg~i~D~l~~v~ 155 (307)
T PRK13906 91 H--IEVSD---DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG----SIGGAVYMNAGA------YGGEVKDCIDYAL 155 (307)
T ss_pred c--eEEeC---CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc----cHhHHHHhhCCc------chhhhhhheeEEE
Confidence 8 56654 589999999999999999999996 445555 9999999 7664 5 48899999999
Q ss_pred EEccCCeEEEecCCCCchhHHHHhcCC-C-CceEEEEEEEEeEeCCCc
Q 022399 245 VVTGKGEIINCSEKQNSELFHSVLGGL-G-QFGIITRARISLEPAPDM 290 (298)
Q Consensus 245 vV~~~Gev~~~s~~~~~dLf~a~~gs~-G-~~GIIt~~tl~l~p~~~~ 290 (298)
+|+++|++++.+++ |+.|+||.+. - .--||++++|+|.|..+.
T Consensus 156 vv~~~G~~~~~~~~---e~~f~YR~S~~~~~~~ii~~~~~~l~~~~~~ 200 (307)
T PRK13906 156 CVNEQGSLIKLTTK---ELELDYRNSIIQKEHLVVLEAAFTLAPGKMT 200 (307)
T ss_pred EEeCCCCEEEEEHH---HccCcCCcccCCCCCEEEEEEEEEECCCCHH
Confidence 99999999999887 8999999985 2 235999999999986543
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.89 E-value=3.9e-23 Score=191.01 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=139.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
+...|.++++|+|++||++++++|++ +++|+.++|+|||+...+...++++|++++|+. +.+++ . .+++|+|
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~----~~~p~~vlGgGSNll~~d~~~~gvvi~l~~~~~--~~~~~-~-~~v~v~a 80 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKE----EDQPLLILGEGSNLLILDDGRGGVIINLGKGID--IEDDE-G-EYVHVGG 80 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEecceEEEEccCCcCeEEEECCCCce--EEEec-C-CEEEEEc
Confidence 67889999999999999999999999 999999999999999777777899999999987 45555 4 5899999
Q ss_pred CccHHHHHHHHHhCCC----ccccCCCCCCceeecccc-cCCcCCCccccCc-ccccEeEEEEEccCCeEEEecCCCCch
Q 022399 189 GELWINILHESVKYGL----APKSWTDYLHLTVGGTLS-NAGISGQAFQHGP-QISNVHQLEVVTGKGEIINCSEKQNSE 262 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl----~~~~~~~~~~~tVGG~v~-naG~g~~~~~~G~-~~d~V~~levV~~~Gev~~~s~~~~~d 262 (298)
|+.|.+|.+++.++|| .+.++|+ ||||++. |+|. ||. +.|.|+++++|+++|++++.+++ |
T Consensus 81 G~~~~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNAGa------yG~~i~d~l~~v~vv~~~G~~~~~~~~---~ 147 (284)
T TIGR00179 81 GENWHKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNAGA------YGVEISEVLVYATILLATGKTEWLTNE---Q 147 (284)
T ss_pred CCcHHHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhccc------chhehhheEEEEEEEeCCCCEEEEEHH---H
Confidence 9999999999999999 4677777 9999999 7765 665 45678999999999999999887 9
Q ss_pred hHHHHhcCC--CCc-eEEEEEEEEe-----EeCCCc
Q 022399 263 LFHSVLGGL--GQF-GIITRARISL-----EPAPDM 290 (298)
Q Consensus 263 Lf~a~~gs~--G~~-GIIt~~tl~l-----~p~~~~ 290 (298)
+.|+||.|. ... .||++++|++ .|.++.
T Consensus 148 ~~f~YR~S~f~~~~~~iil~a~~~l~~~~~~~~~~~ 183 (284)
T TIGR00179 148 LGFGYRTSIFQHKYVGLVLKAEFQLTLGFGTRLDPE 183 (284)
T ss_pred ccccCCccccCCCCcEEEEEEEEEecccccccCChh
Confidence 999999985 222 6999999999 655543
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=1.7e-22 Score=191.80 Aligned_cols=159 Identities=16% Similarity=0.271 Sum_probs=139.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
+...|.+++.|+|++||+++++++++ +++|+.++|+|||+.-.+...+|+||+++ ++. ++++++. .+|+|+|
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~----~~~p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~--i~i~~~~-~~v~vgA 100 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDA----AGEPLLVLGGGSNLVIADDGFDGTVVRVA-TRG--VTVDCGG-GLVRAEA 100 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHH----CCCCEEEEeCCeeEeECCCCccEEEEEeC-CCc--EEEeCCC-CEEEEEc
Confidence 78889999999999999999999999 99999999999999866665679999997 576 6666445 6899999
Q ss_pred CccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccC-CeEEEecCCCCc
Q 022399 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGK-GEIINCSEKQNS 261 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~-Gev~~~s~~~~~ 261 (298)
|+.|.+|.+++.++||. +.++|+ ||||++. |+|+ || .+.|.|.++++++.+ |++++.+++
T Consensus 101 G~~~~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~mNaGa------yG~ei~D~l~sV~vvd~~~G~~~~~~~~--- 167 (363)
T PRK13903 101 GAVWDDVVARTVEAGLGGLECLSGIPG----SAGATPVQNVGA------YGQEVSDTITRVRLLDRRTGEVRWVPAA--- 167 (363)
T ss_pred CCCHHHHHHHHHHcCCccccccCCCCc----chhhHhhcCCCh------hHHHHhhhEeEEEEEECCCCEEEEEEHH---
Confidence 99999999999999997 677777 9999999 7776 55 579999999999965 999998765
Q ss_pred hhHHHHhcCC--C-CceEEEEEEEEeEeCC
Q 022399 262 ELFHSVLGGL--G-QFGIITRARISLEPAP 288 (298)
Q Consensus 262 dLf~a~~gs~--G-~~GIIt~~tl~l~p~~ 288 (298)
|++|+||+|. + ..+|||+++|++.|..
T Consensus 168 el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 168 DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999999983 3 3789999999999874
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.3e-21 Score=181.67 Aligned_cols=165 Identities=15% Similarity=0.125 Sum_probs=139.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCC-CCeEEEcCCCceEEEEc
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQ-GPKMQVYAENSFYVDVS 187 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~-~i~i~i~~~~~~~V~V~ 187 (298)
+...+.++++|+|++||+++++++++ +++|+.++|+|||+...+...+|+||+++.++ + +..+.+. .+|+|+
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~----~~ip~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~--i~~~~~~-~~v~v~ 89 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQ----RQLPLFWLGGGSNLLVRDEGFDGLVARYRGQRWE--LHEHGDT-AEVWVE 89 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHH----CCCCEEEEecceeEEEeCCCcCeEEEEecCCCcE--EEEeCCc-EEEEEE
Confidence 78999999999999999999999999 99999999999999988887889999998754 4 5555544 589999
Q ss_pred CCccHHHHHHHHHhCCCc-cccCCCCCCceeecccc-cCCcCCCccccCcccccEeEEEEEccCCeEEEecCCCCchhHH
Q 022399 188 GGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLS-NAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQNSELFH 265 (298)
Q Consensus 188 aG~~~~~L~~~l~~~Gl~-~~~~~~~~~~tVGG~v~-naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~~~dLf~ 265 (298)
||+.|.+|.+++.++||. +....+.|. ||||++. |+|. ..+.+.|.|.++++++.+|++++.+++ |++|
T Consensus 90 AG~~~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGa-----yg~ei~d~l~~V~~~~~~g~~~~~~~~---el~f 160 (295)
T PRK14649 90 AGAPMAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGC-----YGGDTATVLIRAWLLLNGSECVEWSVH---DFAY 160 (295)
T ss_pred cCCcHHHHHHHHHHcCCccccccCCCCc-chhHHHHhhccc-----cceEhheeEEEEEEEeCCCCEEEEeHH---HcCc
Confidence 999999999999999998 333333333 9999777 8775 233689999999999999999999776 9999
Q ss_pred HHhcCC--CC--------ceEEEEEEEEeEeCCC
Q 022399 266 SVLGGL--GQ--------FGIITRARISLEPAPD 289 (298)
Q Consensus 266 a~~gs~--G~--------~GIIt~~tl~l~p~~~ 289 (298)
+||.|. .. --||++++|++.|.++
T Consensus 161 ~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~~ 194 (295)
T PRK14649 161 GYRTSVLKQLRADGITWRPPLVLAARFRLHRDDP 194 (295)
T ss_pred ccceeecccccccccccCCeEEEEEEEEECCCCH
Confidence 999984 21 2399999999998754
No 24
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=7.1e-21 Score=176.55 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=138.0
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
+...+.+++.|+|.+|+++++++++ .++|+.++|+|+|+...+.+.+|+||.+.+|+. +++++ .+++|+|
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~-----~~~p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~--i~i~~---~~v~v~A 99 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLK-----EGIEVKILGNGTNVLPKDEPMDFVVVSTERLDD--IFVDN---DKIICES 99 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHh-----cCCCEEEEcCCeeEEEecCCccEEEEEeCCcCc--eEEeC---CEEEEeC
Confidence 7899999999999999999999886 488999999999999888777899999977988 66664 4799999
Q ss_pred CccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccCc-ccccEeEEEEEccCCeEEEecCCCCch
Q 022399 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHGP-QISNVHQLEVVTGKGEIINCSEKQNSE 262 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G~-~~d~V~~levV~~~Gev~~~s~~~~~d 262 (298)
|+.|.+|.+++.++||. +.++|+ ||||++. |+|. ||. +.|.|.++++++ +|++++.+++ |
T Consensus 100 G~~l~~L~~~~~~~GL~GlE~l~gIPG----TVGGAv~mNAGa------yG~ei~d~l~~V~~~d-~g~v~~~~~~---e 165 (297)
T PRK14653 100 GLSLKKLCLVAAKNGLSGFENAYGIPG----SVGGAVYMNAGA------YGWETAENIVEVVAYD-GKKIIRLGKN---E 165 (297)
T ss_pred CCcHHHHHHHHHHCCCcchhhhcCCch----hHHHHHHHhCcc------CchhhheeEEEEEEEC-CCEEEEEchh---h
Confidence 99999999999999996 666777 9999999 8776 775 899999999999 7899998777 8
Q ss_pred hHHHHhcCC-CC--ceEEEEEEEEeEeCCCc
Q 022399 263 LFHSVLGGL-GQ--FGIITRARISLEPAPDM 290 (298)
Q Consensus 263 Lf~a~~gs~-G~--~GIIt~~tl~l~p~~~~ 290 (298)
+-|.||.+. +. -.|||+++|+|.|.++.
T Consensus 166 ~~f~YR~S~~~~~~~~iI~~a~f~L~~~~~~ 196 (297)
T PRK14653 166 IKFSYRNSIFKEEKDLIILRVTFKLKKGNKN 196 (297)
T ss_pred ccccCccccCCCCCcEEEEEEEEEEecCCHH
Confidence 899999874 32 23999999999997654
No 25
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.84 E-value=3e-20 Score=173.01 Aligned_cols=184 Identities=19% Similarity=0.304 Sum_probs=157.9
Q ss_pred hcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC-ccC--CCe--EEEEcCCCCCCeEEEcC
Q 022399 104 DFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-AQA--HQG--VVINMESLQGPKMQVYA 178 (298)
Q Consensus 104 ~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~-~~~--~~g--vvIdm~~l~~i~i~i~~ 178 (298)
=|-+.....|+.|+.|+..+||..+|+.|.+ +++-+.+.|||+|..+. ..+ +.- +.+||+.||++ +-+|.
T Consensus 152 Lregkf~RiPDiVvWP~chdevVkiv~lA~k----hN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnri-LWidr 226 (613)
T KOG1233|consen 152 LREGKFPRIPDIVVWPKCHDEVVKIVELAMK----HNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRI-LWIDR 226 (613)
T ss_pred HhcCccCCCCceEecccchHHHHHHHHHHhh----cCeEEEEeCCcccccccccCCcccceeEEEecHHhhhhe-eEecc
Confidence 3455678999999999999999999999999 99999999999998744 333 222 44688899998 88999
Q ss_pred CCceEEEEcCCccHHHHHHHHHhCCCc-cccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEE-Eec
Q 022399 179 ENSFYVDVSGGELWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEII-NCS 256 (298)
Q Consensus 179 ~~~~~V~V~aG~~~~~L~~~l~~~Gl~-~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~-~~s 256 (298)
++ .++.+++|+.-.+|.+.|.+.|++ ...+-++...|+||.+++.+.|-.-..||.+-|.|+.+++|+|.|.+- .|.
T Consensus 227 eN-LT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq 305 (613)
T KOG1233|consen 227 EN-LTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQ 305 (613)
T ss_pred cc-ceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhc
Confidence 88 899999999999999999999998 333345667799999998888888889999999999999999999764 344
Q ss_pred CC---CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceee
Q 022399 257 EK---QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKA 293 (298)
Q Consensus 257 ~~---~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~ 293 (298)
.. .+||+-+-..||.|++|||||+++|+.|.|+..++
T Consensus 306 ~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ry 345 (613)
T KOG1233|consen 306 VPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRY 345 (613)
T ss_pred CCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhc
Confidence 32 57899999999999999999999999999987654
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=2.5e-20 Score=172.78 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=141.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccC-CCeEEEEcCCCCCCeEEEcCCCceEEEEc
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQA-HQGVVINMESLQGPKMQVYAENSFYVDVS 187 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~-~~gvvIdm~~l~~i~i~i~~~~~~~V~V~ 187 (298)
+...+..++.|+|++|++++++++++ .++|+.+.|+|+|+...+.+ .+|+||.+.+|+. ++++. ..++|+
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~----~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~--i~~~~---~~v~a~ 99 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIE----EKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK--IEIHD---NQIVAE 99 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHH----cCCCEEEEeceeEEEEECCCccceEEEEECCcCc--EEEeC---CEEEEE
Confidence 78999999999999999999999999 99999999999999877776 6899999867888 66654 469999
Q ss_pred CCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccCCeEEEecCCCCc
Q 022399 188 GGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGKGEIINCSEKQNS 261 (298)
Q Consensus 188 aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~Gev~~~s~~~~~ 261 (298)
||+.|.+|.+++.++||. +.++|+ ||||++. |+|+ || .+.|.|.++++++.+|++++.+.+
T Consensus 100 AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNAGa------yG~ei~d~l~sV~~~d~~g~~~~~~~~--- 166 (302)
T PRK14650 100 CGTNFEDLCKFALQNELSGLEFIYGLPG----TLGGAIWMNARC------FGNEISEILDKITFIDEKGKTICKKFK--- 166 (302)
T ss_pred eCCcHHHHHHHHHHcCCchhhhhcCCCc----chhHHHHhhCCc------cccchheeEEEEEEEECCCCEEEEEHH---
Confidence 999999999999999997 778888 9999999 8886 55 589999999999999999998877
Q ss_pred hhHHHHhcCC--CCceEEEEEEEEeEeCCCc
Q 022399 262 ELFHSVLGGL--GQFGIITRARISLEPAPDM 290 (298)
Q Consensus 262 dLf~a~~gs~--G~~GIIt~~tl~l~p~~~~ 290 (298)
|+-|+||.|. ..-.||++++|+|.|.++.
T Consensus 167 e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~~ 197 (302)
T PRK14650 167 KEEFKYKISPFQNKNTFILKATLNLKKGNKK 197 (302)
T ss_pred HcCcccccccCCCCCEEEEEEEEEEcCCCHH
Confidence 8999999985 2236999999999997654
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=5.4e-20 Score=168.54 Aligned_cols=160 Identities=19% Similarity=0.304 Sum_probs=143.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
++..+..++.|++.+|+.++++.+.+ .++|+.+.|+|+|+.-.+...++++|.+..++. ++++.+. .+++|++
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~----~~~p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~--~~~~~~~-~~i~a~a 89 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKA----EDLPVLILGGGSNLLVRDGGIGGVVIKLGKLNF--IEIEGDD-GLIEAGA 89 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhh----cCCCEEEEecCceEEEecCCCceEEEEcccccc--eeeeccC-CeEEEcc
Confidence 78999999999999999999999999 999999999999988777767899999988877 5666655 5999999
Q ss_pred CccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccCCeEEEecCCCCch
Q 022399 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGKGEIINCSEKQNSE 262 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~Gev~~~s~~~~~d 262 (298)
|+.|.+|.+++.++||. ..++|+ ||||++. |+|+ || .+.|.+.++++++.+|++.+.+++ |
T Consensus 90 G~~~~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNaGA------yG~Ei~d~~~~v~~ld~~G~~~~l~~~---e 156 (291)
T COG0812 90 GAPWHDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNAGA------YGVEISDVLVSVEVLDRDGEVRWLSAE---E 156 (291)
T ss_pred CCcHHHHHHHHHHcCCcchhhhcCCCc----ccchhhhccCcc------cccchheeEEEEEEEcCCCCEEEEEHH---H
Confidence 99999999999999997 778888 9999999 8886 55 589999999999999999999888 9
Q ss_pred hHHHHhcCC--CCceEEEEEEEEeEeCC
Q 022399 263 LFHSVLGGL--GQFGIITRARISLEPAP 288 (298)
Q Consensus 263 Lf~a~~gs~--G~~GIIt~~tl~l~p~~ 288 (298)
+-|+||.|. -...||++|+|+|.|..
T Consensus 157 l~f~YR~S~f~~~~~vvl~v~f~L~~~~ 184 (291)
T COG0812 157 LGFGYRTSPFKKEYLVVLSVEFKLTKGD 184 (291)
T ss_pred hCcccccCcCCCCCEEEEEEEEEeCCCC
Confidence 999999985 33389999999999974
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.7e-19 Score=169.44 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=137.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEc--CCCceEEEE
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVY--AENSFYVDV 186 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~--~~~~~~V~V 186 (298)
+...+..++.|+|++|++++++++++ .++|+.+.|+|+|+...+ ..+|+||.+ ++++ ++++ .++...|+|
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~----~~~p~~vlG~GSNlLv~D-~~~g~vI~~-~~~~--~~~~~~~~~~~~v~a 88 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARA----AGLPVLVLGGGSNVLFTE-DFDGTVLLN-RIKG--IEVLSEDDDAWYLHV 88 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHH----cCCCEEEEeceEEEEECC-CCCEEEEEe-cCCc--eEEEecCCCeEEEEE
Confidence 78999999999999999999999999 999999999999998766 578999997 4887 5652 222037999
Q ss_pred cCCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccC-CeEEEecCCC
Q 022399 187 SGGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGK-GEIINCSEKQ 259 (298)
Q Consensus 187 ~aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~-Gev~~~s~~~ 259 (298)
+||+.|.+|.+++.++||+ +.++|+ ||||++. |+|+ || .+.|.|.++++++.+ |++++.+++
T Consensus 89 ~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGa------yG~ei~d~l~~V~v~d~~~g~~~~~~~~- 157 (334)
T PRK00046 89 GAGENWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQNIGA------YGVELKDVCDYVEALDLATGEFVRLSAA- 157 (334)
T ss_pred EcCCcHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHhcCCc------CcccHheeEEEEEEEECCCCcEEEEEHH-
Confidence 9999999999999999997 778888 9999999 8887 55 589999999999987 999999887
Q ss_pred CchhHHHHhcCC-C-C---ceEEEEEEEEeEeC
Q 022399 260 NSELFHSVLGGL-G-Q---FGIITRARISLEPA 287 (298)
Q Consensus 260 ~~dLf~a~~gs~-G-~---~GIIt~~tl~l~p~ 287 (298)
|+.|+||.|. - . --||++++|+|.|.
T Consensus 158 --e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 158 --ECRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred --HcCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 9999999985 2 2 34999999999986
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=5.2e-19 Score=166.39 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=137.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEE---cCCCceEEE
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQV---YAENSFYVD 185 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i---~~~~~~~V~ 185 (298)
+...+..++.|+|.+|++++++++++ .++|+.+.|+|+|+...+.+.+|+||.+.+|+. +++ ..+. ..++
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~----~~~p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~--i~i~~~~~~~-~~v~ 98 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQR----ARIPLSLIGGGSNVLIADEGVPGLMLSLRRFRS--LHTQTQRDGS-VLVH 98 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHH----cCCCEEEEeceeEEEEeCCCccEEEEEeCCcCc--eEEeeccCCc-EEEE
Confidence 78999999999999999999999999 999999999999999888777899999967888 453 2333 4799
Q ss_pred EcCCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEE-------------
Q 022399 186 VSGGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVV------------- 246 (298)
Q Consensus 186 V~aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV------------- 246 (298)
|+||+.|.+|.+++.++||. +.++|+ ||||++. |+|+ || .+.|.|.+++++
T Consensus 99 agAG~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~mNAGA------yG~ei~d~l~~V~v~d~~~~~~~~~~~~ 168 (354)
T PRK14648 99 AGAGLPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYMNARC------YGRAIADCFHSARTLVLHPVRSRAKELP 168 (354)
T ss_pred EEeCCcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhhcCCc------cceEhhheEEEEEEEeccCccccccccc
Confidence 99999999999999999997 778888 9999999 8887 55 589999999999
Q ss_pred -------ccCCeE-------------EEecCCCCchhHHHHhcCCCC----------ceEEEEEEEEeEeCCCc
Q 022399 247 -------TGKGEI-------------INCSEKQNSELFHSVLGGLGQ----------FGIITRARISLEPAPDM 290 (298)
Q Consensus 247 -------~~~Gev-------------~~~s~~~~~dLf~a~~gs~G~----------~GIIt~~tl~l~p~~~~ 290 (298)
+.+|++ .+.+++ |+.|+||.|.=. --||++++|+|.|.++.
T Consensus 169 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~~~ 239 (354)
T PRK14648 169 EVRKNAQDKRGECLGLDGGPFTCSSFQTVFAR---AGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNPA 239 (354)
T ss_pred ccccccccCCCceecccccccccccceEecHH---HcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCCHH
Confidence 566776 444444 889999998421 24999999999987643
No 30
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.68 E-value=2.2e-17 Score=154.03 Aligned_cols=129 Identities=22% Similarity=0.297 Sum_probs=118.5
Q ss_pred EEcCCCCCCeEEEcCCCceEEEEcCCccHHHHHHHHHhCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEE
Q 022399 164 INMESLQGPKMQVYAENSFYVDVSGGELWINILHESVKYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQL 243 (298)
Q Consensus 164 Idm~~l~~i~i~i~~~~~~~V~V~aG~~~~~L~~~l~~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~l 243 (298)
|++..|..| +++|.++ .+|+|+|+++.+++.++|.+.|++++..+...+.||||.+.+-|+-+++++||.+.+.+.+.
T Consensus 106 v~id~l~dI-Leld~ek-mtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 106 VPIDELHDI-LELDEEK-MTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred CCHHHHhHH-Hhcchhc-ceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhhee
Confidence 333444455 7888888 89999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEccCCeEEEecCC-CCchhHHHHhcCCCCceEEEEEEEEeEeCCCceeee
Q 022399 244 EVVTGKGEIINCSEK-QNSELFHSVLGGLGQFGIITRARISLEPAPDMVKAN 294 (298)
Q Consensus 244 evV~~~Gev~~~s~~-~~~dLf~a~~gs~G~~GIIt~~tl~l~p~~~~~~~~ 294 (298)
|+|++||++++++++ +++|||+|+-.|.|++|..+.+++|+.|..+.++-.
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvklt 235 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLT 235 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEE
Confidence 999999999999988 899999999999999999999999999999887654
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=2.2e-16 Score=144.58 Aligned_cols=149 Identities=20% Similarity=0.206 Sum_probs=126.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCC-CCCCeEEEcCCCceEEEEc
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES-LQGPKMQVYAENSFYVDVS 187 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~-l~~i~i~i~~~~~~~V~V~ 187 (298)
+...+..++ |+|++|+++++ ++|+.+.|+|+|+.-.+...+|+||.+.+ ++. ++++ . +|+
T Consensus 17 iGG~A~~~~-p~~~~~l~~~~----------~~p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~--~~~~----~--~a~ 77 (273)
T PRK14651 17 VGGPAELWT-VETHEQLAEAT----------EAPYRVLGGGSNLLVSDAGVPERVIRLGGEFAE--WDLD----G--WVG 77 (273)
T ss_pred cCceEEEEe-cCCHHHHHHHH----------CCCeEEEeceeEEEEcCCCcceEEEEECCccee--EeEC----C--EEE
Confidence 678888888 99999999887 25899999999998887777899998865 444 3332 3 599
Q ss_pred CCccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccCCeEEEecCCCCc
Q 022399 188 GGELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGKGEIINCSEKQNS 261 (298)
Q Consensus 188 aG~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~Gev~~~s~~~~~ 261 (298)
||+.|.+|.+++.++||. +.++|+ ||||++. |+|+ || .+.|.|.++++++ +|++++.+++
T Consensus 78 AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGa------yG~ei~d~l~~V~~~~-~g~~~~~~~~--- 143 (273)
T PRK14651 78 GGVPLPGLVRRAARLGLSGLEGLVGIPA----QVGGAVKMNAGT------RFGEMADALHTVEIVH-DGGFHQYSPD--- 143 (273)
T ss_pred CCCcHHHHHHHHHHCCCcchhhhcCCCc----chhhHHHhhCCc------cccChheeEEEEEEEE-CCCEEEEEHH---
Confidence 999999999999999997 778888 9999999 8886 55 6899999999998 8999999887
Q ss_pred hhHHHHhcCC-CCceEEEEEEEEeEeCCCc
Q 022399 262 ELFHSVLGGL-GQFGIITRARISLEPAPDM 290 (298)
Q Consensus 262 dLf~a~~gs~-G~~GIIt~~tl~l~p~~~~ 290 (298)
|+.|+||.|. ..-.||++++|+|.|..+.
T Consensus 144 e~~f~YR~S~~~~~~iIl~a~f~l~~~~~~ 173 (273)
T PRK14651 144 ELGFGYRHSGLPPGHVVTRVRLKLRPSTPE 173 (273)
T ss_pred HccccccccCCCCCEEEEEEEEEECCCCHH
Confidence 9999999985 3235999999999997654
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.49 E-value=1.1e-13 Score=125.78 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=115.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcC
Q 022399 109 YQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSG 188 (298)
Q Consensus 109 ~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~a 188 (298)
+...++.++.|++.+ + ++|+.+.|+|+|+.-.+...++++ -+++++. ++++. .+++|+|
T Consensus 15 iGG~A~~~~~~~~~~-l--------------~~p~~vlG~GSNlLv~D~g~~~vv-~~~~~~~--~~~~~---~~v~~~A 73 (257)
T PRK13904 15 IGPPLEVLVLEEIDD-F--------------SQDGQIIGGANNLLISPNPKNLAI-LGKNFDY--IKIDG---ECLEIGG 73 (257)
T ss_pred ECceEEEEEEechhh-h--------------CCCeEEEeceeEEEEecCCccEEE-EccCcCe--EEEeC---CEEEEEc
Confidence 788999999998887 5 358999999999886665645555 3456877 66654 4799999
Q ss_pred CccHHHHHHHHHhCCCc----cccCCCCCCceeecccc-cCCcCCCccccC-cccccEeEEEEEccCCeEEEecCCCCch
Q 022399 189 GELWINILHESVKYGLA----PKSWTDYLHLTVGGTLS-NAGISGQAFQHG-PQISNVHQLEVVTGKGEIINCSEKQNSE 262 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~----~~~~~~~~~~tVGG~v~-naG~g~~~~~~G-~~~d~V~~levV~~~Gev~~~s~~~~~d 262 (298)
|+.|.+|.+++.++||. +.++|+ ||||++. |+|+ || .+.|.|.++++++ | +.+++ |
T Consensus 74 G~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGAv~mNaGa------~g~ei~d~l~~V~~~~--~---~~~~~---e 135 (257)
T PRK13904 74 ATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGLVKMNAGL------KEYEISNNLESICTNG--G---WIEKE---D 135 (257)
T ss_pred CCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHHHHhcCCc------CccchheeEEEEEEEe--e---EEeHH---H
Confidence 99999999999999997 777888 9999999 8886 44 5889999999998 4 44444 8
Q ss_pred hHHHHhcCCCCceEEEEEEEEeEeCCCc
Q 022399 263 LFHSVLGGLGQFGIITRARISLEPAPDM 290 (298)
Q Consensus 263 Lf~a~~gs~G~~GIIt~~tl~l~p~~~~ 290 (298)
+.|+||.+.=. .||++++|+|.|.++.
T Consensus 136 ~~f~YR~S~~~-~iIl~a~f~l~~~~~~ 162 (257)
T PRK13904 136 IGFGYRSSGIN-GVILEARFKKTHGFDE 162 (257)
T ss_pred CcccccCcCCC-cEEEEEEEEECCCCHH
Confidence 99999998533 4999999999997643
No 33
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=97.38 E-value=0.00071 Score=67.08 Aligned_cols=150 Identities=11% Similarity=0.038 Sum_probs=91.7
Q ss_pred CccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC---ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEc
Q 022399 112 LPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVS 187 (298)
Q Consensus 112 ~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~---~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~ 187 (298)
....+++|+|.+|+.++++.. . ...+.+||+.+.-. ......++||++++... .++.++ ..++++
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~-------~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~---~~l~IG 259 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH-------P-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETD---DGIEIG 259 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC-------C-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcC---CEEEEe
Confidence 456789999999999998642 1 25678999987421 12235789999886542 145543 579999
Q ss_pred CCccHHHHHHHHHhC--CCc-----cccCCCCCCceeecccccCCcCCCccccCcccccE-------eEEEEEccCCeEE
Q 022399 188 GGELWINILHESVKY--GLA-----PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNV-------HQLEVVTGKGEII 253 (298)
Q Consensus 188 aG~~~~~L~~~l~~~--Gl~-----~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V-------~~levV~~~Gev~ 253 (298)
|++++.++.+.+.++ .|. ..+..--...||||.++++.. .+|.. -.+++..++|+ +
T Consensus 260 A~vT~~el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~-R 329 (467)
T TIGR02963 260 AAVTLTDAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGR-R 329 (467)
T ss_pred cCCcHHHHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCc-E
Confidence 999999998755543 221 233333456699999998642 22322 13455566663 2
Q ss_pred EecCCCCchhHHHHhc-CCCCceEEEEEEEEeE
Q 022399 254 NCSEKQNSELFHSVLG-GLGQFGIITRARISLE 285 (298)
Q Consensus 254 ~~s~~~~~dLf~a~~g-s~G~~GIIt~~tl~l~ 285 (298)
+..-+ |.|-.++- .+..--||+++.+...
T Consensus 330 ~vpl~---dF~~g~~kt~L~~~EiI~~I~iP~~ 359 (467)
T TIGR02963 330 TLPLE---DFFIDYGKTDRQPGEFVEALHVPRP 359 (467)
T ss_pred EEeHH---HhhcccccccCCCCceEEEEEecCC
Confidence 22222 54443332 2233358888877643
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.00 E-value=0.00074 Score=57.98 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=83.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC---ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcC
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSG 188 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~---~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~a 188 (298)
+..+++|+|.+|+.++++ .. . ...+.+||+..... ......++||++++... .|+.++ ..++++|
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~~----~--~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~---~~l~IGA 70 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--KG----P--DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDD---GGLRIGA 70 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--HG----T--TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEET---SEEEEET
T ss_pred CeEEEccCCHHHHHHHHh--cC----C--CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEec---cEEEECC
Confidence 456899999999999998 22 2 46788899886411 11235799999886432 256664 5899999
Q ss_pred CccHHHHHHHHH---------hCCCccccCCCCCCceeecccccCCcCCCccccCcccccEeEEEEEccCCeEEEecCCC
Q 022399 189 GELWINILHESV---------KYGLAPKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNVHQLEVVTGKGEIINCSEKQ 259 (298)
Q Consensus 189 G~~~~~L~~~l~---------~~Gl~~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V~~levV~~~Gev~~~s~~~ 259 (298)
+++..++.+.-. +.-....+.+--...|+||.++++...+-. .-.+.-.=-.+++..++|+. +..-+
T Consensus 71 ~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~sD~--~~~Llal~A~v~i~~~~g~r-~~~~~- 146 (171)
T PF00941_consen 71 AVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNASPASDL--APALLALDARVEIASPDGTR-TVPLE- 146 (171)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT-SH--HHHHHHTT-EEEEEETTEEE-EEEGG-
T ss_pred CccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccCcccccH--HHHHHHhCcEEEEEcCCeeE-EEEHH-
Confidence 999999988611 111112222223456999999976531110 00011111256677778743 33332
Q ss_pred CchhHHHHhc-CCCCceEEEEEEE
Q 022399 260 NSELFHSVLG-GLGQFGIITRARI 282 (298)
Q Consensus 260 ~~dLf~a~~g-s~G~~GIIt~~tl 282 (298)
|+|.++.- .+..--+||++.+
T Consensus 147 --~f~~g~~~~~l~~~eli~~I~i 168 (171)
T PF00941_consen 147 --DFFTGPRKTDLEPGELITSIRI 168 (171)
T ss_dssp --GGEECTTEESS-TTEEEEEEEE
T ss_pred --HhcCccccccCCCCcEEEEEEC
Confidence 43322221 2334467888765
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=96.87 E-value=0.002 Score=59.01 Aligned_cols=100 Identities=12% Similarity=0.087 Sum_probs=67.1
Q ss_pred EEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCC-CccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCCccH
Q 022399 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQG-QAQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGELW 192 (298)
Q Consensus 115 ~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g-~~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG~~~ 192 (298)
.+++|+|.+|..++++. .+-...+.+||+.+.. .......++||++++ .. .++.++ ..++++|++++
T Consensus 4 ~y~~P~sl~Ea~~ll~~-------~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~---~~l~IGA~vT~ 72 (258)
T PRK09799 4 QFFRPDSVEQALELKRR-------YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDN---GALRIGAMSRL 72 (258)
T ss_pred cEeCCCCHHHHHHHHHh-------CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecC---CEEEEccCCcH
Confidence 57899999999998863 2223567899999842 222245789999975 42 145433 58999999999
Q ss_pred HHHHHHHHhC-CCc-----cccCCCCCCceeecccccCC
Q 022399 193 INILHESVKY-GLA-----PKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 193 ~~L~~~l~~~-Gl~-----~~~~~~~~~~tVGG~v~naG 225 (298)
.++.+...-. .|. ..+..--...|+||.++++.
T Consensus 73 ~~l~~~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 73 QPLRDARFIPAALREALGFVYSRHLRNQSTIGGEIAARQ 111 (258)
T ss_pred HHHHhCcccHHHHHHHHHHhCCHHHhccchhHHHhhcCC
Confidence 9998743211 121 22333345569999999763
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.61 E-value=0.0036 Score=57.32 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=64.7
Q ss_pred EEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCC-CCccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCCccH
Q 022399 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQ-GQAQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGELW 192 (298)
Q Consensus 115 ~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~-g~~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG~~~ 192 (298)
.+++|+|.+|..++++. .+-.-.+.+||+.+. ........++||++++ .. .|+.++ ..++++|.+++
T Consensus 3 ~y~~P~sl~Ea~~ll~~-------~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~---~~l~IGA~~t~ 71 (257)
T TIGR03312 3 QFFRPESTIQALELKKR-------HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQG---GALHIGAMCHL 71 (257)
T ss_pred ceECCCCHHHHHHHHHh-------CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecC---CEEEEEeCCcH
Confidence 36899999999998763 221246789999985 2222334688999876 43 145443 57999999999
Q ss_pred HHHHHHHHhC-CCc-----cccCCCCCCceeecccccCC
Q 022399 193 INILHESVKY-GLA-----PKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 193 ~~L~~~l~~~-Gl~-----~~~~~~~~~~tVGG~v~naG 225 (298)
.++.+...-. .|. ..+..--...|+||.++|+.
T Consensus 72 ~~l~~~~~~~~~L~~aa~~va~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 72 QSLIDNELTPAALKEALGFVYSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred HHHHhCcchHHHHHHHHHHhCCHHHhccccHHHHhhcCC
Confidence 9987531100 111 22222334569999999764
No 37
>PLN02906 xanthine dehydrogenase
Probab=95.81 E-value=0.021 Score=63.41 Aligned_cols=102 Identities=10% Similarity=0.009 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC---ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcC
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSG 188 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~---~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~a 188 (298)
...+++|+|.+|+.++++.. .+ .++.+||+.+... ......++||++++... .|+.++ ..++++|
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~------~~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~---~~l~IGA 296 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY------PD--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKD---DGLEIGA 296 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC------CC--CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecC---CEEEEec
Confidence 45699999999999987642 12 4678899987421 12235789999886542 145443 5799999
Q ss_pred CccHHHHHHHHHhCC-------------C-----ccccCCCCCCceeecccccCC
Q 022399 189 GELWINILHESVKYG-------------L-----APKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 189 G~~~~~L~~~l~~~G-------------l-----~~~~~~~~~~~tVGG~v~naG 225 (298)
++++.++.+.|.+.= | ...+..--...|+||.++|+.
T Consensus 297 ~vT~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 297 AVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred CCcHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 999999998644320 0 022333345669999999864
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.79 E-value=0.0088 Score=55.69 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=65.4
Q ss_pred EEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCC---CccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCCc
Q 022399 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQG---QAQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGE 190 (298)
Q Consensus 115 ~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g---~~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG~ 190 (298)
.+++|+|.+|..++++. .+ ...+.+||+.+.. ........+||++++... .|+..++ ..++++|++
T Consensus 6 ~~~~P~sl~Ea~~ll~~-------~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~--~~l~IGA~v 75 (291)
T PRK09971 6 EYHEAATLEEAIELLAD-------NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAED--GSIRIGAAT 75 (291)
T ss_pred ceeCCCCHHHHHHHHHh-------CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCC--CEEEEEeCC
Confidence 68999999999998863 21 2467899998741 112235789999886542 1454332 479999999
Q ss_pred cHHHHHHH--HHhC-C-Cc-----cccCCCCCCceeecccccCC
Q 022399 191 LWINILHE--SVKY-G-LA-----PKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 191 ~~~~L~~~--l~~~-G-l~-----~~~~~~~~~~tVGG~v~naG 225 (298)
++.++.+. +.++ . |. ..+..--...|+||.++++.
T Consensus 76 t~~~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 76 TFTQIIEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred cHHHHhcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 99999761 1111 0 11 22222334569999999764
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.30 E-value=0.016 Score=54.85 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC---ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcC
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSG 188 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~---~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~a 188 (298)
+-.+++|+|.+|..++++.. + .-.+.+||+.+... .......+||+.++... .|+.++ ..++++|
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~-------~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~---~~l~IGA 72 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAH-------P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLA---DGLRIGA 72 (321)
T ss_pred CceEECCCCHHHHHHHHhhC-------C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecC---CEEEEec
Confidence 34689999999999988642 1 23578999976311 12235789999876432 155543 5799999
Q ss_pred CccHHHHHHHHH-hCC---Cc-----cccCCCCCCceeecccccC
Q 022399 189 GELWINILHESV-KYG---LA-----PKSWTDYLHLTVGGTLSNA 224 (298)
Q Consensus 189 G~~~~~L~~~l~-~~G---l~-----~~~~~~~~~~tVGG~v~na 224 (298)
++++.++.+.-. +.- |. ..+..--...|+||.++++
T Consensus 73 ~vT~~~l~~~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 73 GVTLAALAEDALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred cCcHHHHhhChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 999999865311 110 11 2222333556999999964
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.99 E-value=0.014 Score=53.64 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC--c--cCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCCccHH
Q 022399 119 PNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ--A--QAHQGVVINMESLQGP-KMQVYAENSFYVDVSGGELWI 193 (298)
Q Consensus 119 P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~--~--~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG~~~~ 193 (298)
|+|.+|+.++++.. . ...+.+||+.+... . ......+||++++... .++.+ + ..++++|++++.
T Consensus 1 P~sl~ea~~ll~~~-~-------~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~--~-~~l~IGA~vt~~ 69 (264)
T TIGR03199 1 PAALDEAWSLLEKA-P-------DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTS--D-THVSIGALTTLN 69 (264)
T ss_pred CCCHHHHHHHHHhC-C-------CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEec--C-CEEEEecCCcHH
Confidence 88999999988742 1 24678999987421 1 1225789999987543 14443 3 589999999999
Q ss_pred HHHHHHH-hC---CCc-----cccCCCCCCceeecccccC
Q 022399 194 NILHESV-KY---GLA-----PKSWTDYLHLTVGGTLSNA 224 (298)
Q Consensus 194 ~L~~~l~-~~---Gl~-----~~~~~~~~~~tVGG~v~na 224 (298)
++.+.-. +. .|. ..+..--...|+||.++++
T Consensus 70 ~l~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 70 ECRKNPLIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HHhhChHhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 9964210 11 111 2223334556999999975
No 41
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=94.90 E-value=0.096 Score=58.33 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=89.0
Q ss_pred cEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC---ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCC
Q 022399 114 SAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ---AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGG 189 (298)
Q Consensus 114 ~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~---~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG 189 (298)
...+.|+|.+|+.++++.. . .-++.+||+.+.-. ......++||++++... .++.++ ..++++|+
T Consensus 237 ~~~~~P~tl~ea~~ll~~~------~--~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~---~~l~IGA~ 305 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY------P--QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTG---DGLTLGAG 305 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC------C--CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcC---CEEEEecc
Confidence 5699999999999987642 1 24578899997421 12234589999886543 144443 57999999
Q ss_pred ccHHHHHHHHHhC---------C----Cc-----cccCCCCCCceeecccccCCcCCCccccCcccccE-------eEEE
Q 022399 190 ELWINILHESVKY---------G----LA-----PKSWTDYLHLTVGGTLSNAGISGQAFQHGPQISNV-------HQLE 244 (298)
Q Consensus 190 ~~~~~L~~~l~~~---------G----l~-----~~~~~~~~~~tVGG~v~naG~g~~~~~~G~~~d~V-------~~le 244 (298)
+++.++.+.|.+. . |. ..+..--...|+||.++|+... .|.. -.++
T Consensus 306 vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~---------sD~~p~LlAl~A~v~ 376 (1330)
T TIGR02969 306 LSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD---------SDLNPLLAVGNCTLN 376 (1330)
T ss_pred ccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc---------hhHHHHHHHcCcEEE
Confidence 9999998864422 1 10 2233334567999999987532 2221 1334
Q ss_pred EEccCCeEEEecCCCCchhHH-HH-hcCCCCceEEEEEEEEe
Q 022399 245 VVTGKGEIINCSEKQNSELFH-SV-LGGLGQFGIITRARISL 284 (298)
Q Consensus 245 vV~~~Gev~~~s~~~~~dLf~-a~-~gs~G~~GIIt~~tl~l 284 (298)
+..++|+ ++..-+ |.|. .+ .-.+..--||+++.|..
T Consensus 377 l~s~~g~-R~vpl~---dff~~~~~~t~L~~~Eil~~I~iP~ 414 (1330)
T TIGR02969 377 LLSKEGK-RQIPLS---EQFLSKCPDADLKPQEILVSVNIPY 414 (1330)
T ss_pred EecCCce-EEEehH---HhhhcccccccCCCCceEEEEEecC
Confidence 5556664 333222 4342 22 22333345899987763
No 42
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.02 E-value=0.098 Score=48.60 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=67.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCc---cCCCeEEEEcCCCCC-CeEEEcCCCceEEEEcC
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQA---QAHQGVVINMESLQG-PKMQVYAENSFYVDVSG 188 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~---~~~~gvvIdm~~l~~-i~i~i~~~~~~~V~V~a 188 (298)
+..+++|.|++|...+++. .+ ...+.+|||++...- .....-+||+.++.. ..+... +. ..++++|
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~-------~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~-~g-~~l~IGA 72 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR-------AP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTT-EG-GSLRIGA 72 (284)
T ss_pred ceEEECCCCHHHHHHHHHh-------CC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEee-cC-CEEEEee
Confidence 5678999999999888873 33 578899999986321 224567888888742 112222 33 5799999
Q ss_pred CccHHHHHHHHHhCCCc---------cccCCCCCCceeecccccCCc
Q 022399 189 GELWINILHESVKYGLA---------PKSWTDYLHLTVGGTLSNAGI 226 (298)
Q Consensus 189 G~~~~~L~~~l~~~Gl~---------~~~~~~~~~~tVGG~v~naG~ 226 (298)
-+++.++.+--...... ..+..--...|+||.++++-.
T Consensus 73 ~vt~~ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 73 LVTLTEIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred cccHHHHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCC
Confidence 99999986433211111 222223345699999987643
No 43
>PLN00192 aldehyde oxidase
Probab=92.88 E-value=0.27 Score=54.96 Aligned_cols=107 Identities=9% Similarity=-0.053 Sum_probs=70.1
Q ss_pred CccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCC-ccCCCeEEEEcCCCCCC-eEEEcCCCceEEEEcCC
Q 022399 112 LPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQ-AQAHQGVVINMESLQGP-KMQVYAENSFYVDVSGG 189 (298)
Q Consensus 112 ~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~-~~~~~gvvIdm~~l~~i-~i~i~~~~~~~V~V~aG 189 (298)
.....++|.|.+|+.++++.... .+-...+..||+.+.-. ......++||++++... .++.++ ..++++|+
T Consensus 232 ~~~~~~~P~sl~ea~~ll~~~~~----~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~---~~l~IGA~ 304 (1344)
T PLN00192 232 SRYRWYTPVSVEELQSLLESNNF----DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDE---KGIEIGAV 304 (1344)
T ss_pred CCceEECcCCHHHHHHHHHhCCC----CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecC---CEEEEeec
Confidence 45579999999999999864210 01125677888886422 22234789999886542 145443 57999999
Q ss_pred ccHHHHHHHHHhCCC----c---------cccCCCCCCceeecccccCC
Q 022399 190 ELWINILHESVKYGL----A---------PKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 190 ~~~~~L~~~l~~~Gl----~---------~~~~~~~~~~tVGG~v~naG 225 (298)
+++.++.+.+.+.-. . ..+..--...|+||.++|+.
T Consensus 305 vTl~el~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 305 VTISKAIEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred CcHHHHHHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 999999876654321 0 22333345669999999873
No 44
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=91.70 E-value=0.47 Score=45.55 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=65.8
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCcc---CCCeEEEEcCCCCCC-eEEEcCCCceEEE
Q 022399 110 QLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQ---AHQGVVINMESLQGP-KMQVYAENSFYVD 185 (298)
Q Consensus 110 ~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~---~~~gvvIdm~~l~~i-~i~i~~~~~~~V~ 185 (298)
......++.|.+.+|+++++.. +-..++..|++.+.-... .+-..||-...+... .|++.+ ..++
T Consensus 200 ~~~~~r~~~P~~l~D~a~l~aa--------~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~---~~l~ 268 (493)
T COG4630 200 GSGDDRFIVPATLADFADLLAA--------HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVST---GGLE 268 (493)
T ss_pred cCCCceeEeeccHHHHHHHHhh--------CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecC---CcEE
Confidence 4556789999999999999863 223566667776542211 122334434444332 145554 6899
Q ss_pred EcCCccHHHHHHHHHhCC--C---c--cccCCCCCCceeecccccCC
Q 022399 186 VSGGELWINILHESVKYG--L---A--PKSWTDYLHLTVGGTLSNAG 225 (298)
Q Consensus 186 V~aG~~~~~L~~~l~~~G--l---~--~~~~~~~~~~tVGG~v~naG 225 (298)
++||++..+.++.|.++= | . ..+-.--...|+||.++|+.
T Consensus 269 iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS 315 (493)
T COG4630 269 IGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS 315 (493)
T ss_pred EccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC
Confidence 999999999999988532 1 1 12222223459999999875
No 45
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=57.63 E-value=75 Score=32.72 Aligned_cols=134 Identities=13% Similarity=0.253 Sum_probs=74.4
Q ss_pred CCC-HHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCCCccCCCeEEEEcCC--CCCC--e-EEEcCCCceEEEEcCCc--
Q 022399 119 PNS-VSDIATTVKHIWEMGSHSELTVAARGHGHSLQGQAQAHQGVVINMES--LQGP--K-MQVYAENSFYVDVSGGE-- 190 (298)
Q Consensus 119 P~s-~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g~~~~~~gvvIdm~~--l~~i--~-i~i~~~~~~~V~V~aG~-- 190 (298)
|.+ .+||.+-++.+.+ .+-+++..-.-.++...-.+ ..|+||-+- |=+- . ..-+.+...+.-|=|--
T Consensus 308 p~~~~~eI~a~i~~~~~----~~P~laMVnSdkGITNLHvP-sDVIIDASMPAmIR~~GkmW~~dG~~~Dt~avIPD~sY 382 (741)
T TIGR00178 308 PAAQQEEIEADLQAVYA----QRPELAMVNSDKGITNLHVP-SDVIVDASMPAMIRASGKMWGPDGKLKDTKAVIPDRCY 382 (741)
T ss_pred ChhhHHHHHHHHHHHHh----hCCCEEEeccCCCccccCCC-cCeEEecCcHHHHhccCCccCCCCCcccceeecCCccc
Confidence 444 4679999999998 77777776655555555555 678888542 1000 0 00010000122222221
Q ss_pred --cHHHHHHHHHhCCCc-cccCCCCCCceeecccccCCc-CCCccccCcc-------cccEeEEEEEccCCeEEEecCCC
Q 022399 191 --LWINILHESVKYGLA-PKSWTDYLHLTVGGTLSNAGI-SGQAFQHGPQ-------ISNVHQLEVVTGKGEIINCSEKQ 259 (298)
Q Consensus 191 --~~~~L~~~l~~~Gl~-~~~~~~~~~~tVGG~v~naG~-g~~~~~~G~~-------~d~V~~levV~~~Gev~~~s~~~ 259 (298)
...++++.|.++|-. |..+ |++.|-|- -..+-.||+- .|- .++||+.+|+++..-.-+
T Consensus 383 A~vYq~~I~~ck~nGafDp~Tm---------GsV~NVGLMAqKAEEYGSHdkTFei~~~G--~v~Vvd~~G~vl~eh~Ve 451 (741)
T TIGR00178 383 AGVYQVVIEDCKQNGAFDPTTM---------GTVPNVGLMAQKAEEYGSHDKTFQIPADG--VVRVVDSSGEVLLEQSVE 451 (741)
T ss_pred hHHHHHHHHHHHhcCCCCcccc---------cCCcchhHhHHHHHHhcCCCcceecCCCc--eEEEEeCCCCEEEEeecc
Confidence 246777888899966 5433 44554432 1223456643 222 367889999988766656
Q ss_pred CchhHHHHh
Q 022399 260 NSELFHSVL 268 (298)
Q Consensus 260 ~~dLf~a~~ 268 (298)
..|+|++..
T Consensus 452 ~GDIwRmcq 460 (741)
T TIGR00178 452 AGDIWRMCQ 460 (741)
T ss_pred CCcchhhhh
Confidence 668887653
No 46
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=42.51 E-value=41 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEe
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAAR 146 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vr 146 (298)
=..|+.|.+.+|+..+++.+.+ .+-|+.+|
T Consensus 124 g~~v~~Ps~~~~~~~ll~~a~~----~~~P~~ir 153 (156)
T cd07033 124 NMTVLRPADANETAAALEAALE----YDGPVYIR 153 (156)
T ss_pred CCEEEecCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 4478999999999999999998 66688776
No 47
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=37.70 E-value=45 Score=33.96 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEe-----CCCc-CCCCCc
Q 022399 110 QLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAAR-----GHGH-SLQGQA 156 (298)
Q Consensus 110 ~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vr-----GgGh-s~~g~~ 156 (298)
.+.|-..++|.|+|+|.++|+.|++. ...|+.+. +||| |+....
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~---P~~pIilq~egGraGGHHSweDld 198 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKAN---PTFPIILQWEGGRAGGHHSWEDLD 198 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcC---CCCceEEEEecCccCCccchhhcc
Confidence 46788999999999999999999971 34676653 3444 454443
No 48
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=36.18 E-value=2.7e+02 Score=23.57 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHHhCCCCCceEEEeC-CCcCCC
Q 022399 115 AVLHPNSVSDIATTVKHIWEMGSHSELTVAARG-HGHSLQ 153 (298)
Q Consensus 115 ~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrG-gGhs~~ 153 (298)
+=+.|++.+-++..+++++. +++||++.. .|+.+.
T Consensus 8 AEvwprdys~ler~l~f~r~----~~~pVrvv~~ng~~f~ 43 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRF----NDIPVRVVSENGQVFC 43 (165)
T ss_pred cccCcchHHHHHHHHHHHHh----cCCceEEEecCCcEEE
Confidence 45789999999999999999 999998765 465543
No 49
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=34.74 E-value=66 Score=23.21 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.9
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q 022399 115 AVLHPNSVSDIATTVKHIWE 134 (298)
Q Consensus 115 ~vv~P~s~edV~~ivk~a~~ 134 (298)
.+++|++-+|+.+++...++
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~ 21 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALRE 21 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHT
T ss_pred EEEeeCCHHHHHHHHHHHHc
Confidence 57899999999999998886
No 50
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=33.05 E-value=63 Score=30.08 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=28.9
Q ss_pred CCccEEEECCC------HHHHHHHHHHHHHhC--CCCCceEEEeCCCcC
Q 022399 111 LLPSAVLHPNS------VSDIATTVKHIWEMG--SHSELTVAARGHGHS 151 (298)
Q Consensus 111 ~~p~~vv~P~s------~edV~~ivk~a~~~~--~~~~~~v~vrGgGhs 151 (298)
.....+++|.. +++|.+.++.+.+.+ ....+=|.+||||+-
T Consensus 40 ~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 40 PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 33557777765 588999999998622 114577899999974
No 51
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=29.85 E-value=53 Score=32.21 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=35.3
Q ss_pred eccchhhhhhhcCCcC-CCC--ccEEEECCCH------HHHHHHHHHHHHhCCCCCceEEEeCCCc
Q 022399 94 NFDEVHNAARDFGNRY-QLL--PSAVLHPNSV------SDIATTVKHIWEMGSHSELTVAARGHGH 150 (298)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~--p~~vv~P~s~------edV~~ivk~a~~~~~~~~~~v~vrGgGh 150 (298)
.+....++..|+-... ... ....++|..+ .+|.+.++.+.+.+ ..+=|.+||||+
T Consensus 141 iTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~--~Dviii~RGGGS 204 (438)
T PRK00286 141 ITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARG--EDVLIVARGGGS 204 (438)
T ss_pred EeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCC--CCEEEEecCCCC
Confidence 3333444555554322 122 4678888877 78888888887611 377899999996
No 52
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=29.80 E-value=1.2e+02 Score=22.92 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=28.3
Q ss_pred eEEEEEccCCeEEEecCCCCchhHHHHhcCCCCceEEEEE
Q 022399 241 HQLEVVTGKGEIINCSEKQNSELFHSVLGGLGQFGIITRA 280 (298)
Q Consensus 241 ~~levV~~~Gev~~~s~~~~~dLf~a~~gs~G~~GIIt~~ 280 (298)
..++.++.||..++.+.+ .||.-+++.+....++|.+.
T Consensus 40 ~~vtYiDeD~D~ITlssd--~eL~d~~~~~~~~~~~v~k~ 77 (82)
T cd06397 40 VGVTYIDNDNDEITLSSN--KELQDFYRLSHRESTEVIKL 77 (82)
T ss_pred eEEEEEcCCCCEEEecch--HHHHHHHHhcccccCceeEe
Confidence 567899999999998654 38888888665546666554
No 53
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=26.59 E-value=1.3e+02 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=29.9
Q ss_pred hhhhcCCcCCCCccEEEECCCHHHHHHHHHHHHHhCCCCCceE
Q 022399 101 AARDFGNRYQLLPSAVLHPNSVSDIATTVKHIWEMGSHSELTV 143 (298)
Q Consensus 101 ~~~~~~~~~~~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v 143 (298)
+...|. ..+.+..+++..|++|+.++.+.+.+ .+++.
T Consensus 38 ~~~~W~--~~G~~Kvvlkv~~~~el~~l~~~a~~----~~l~~ 74 (113)
T PRK04322 38 WLEEWL--NEGQKKVVLKVNSEEELLELKEKAER----LGLPT 74 (113)
T ss_pred HHHHHH--HCCCcEEEEeCCCHHHHHHHHHHHHH----cCCCE
Confidence 344565 35679999999999999999999998 77764
No 54
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=24.89 E-value=1.1e+02 Score=22.29 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=21.6
Q ss_pred eEEEEcCCccHHHHHHHHH-hCCCccc
Q 022399 182 FYVDVSGGELWINILHESV-KYGLAPK 207 (298)
Q Consensus 182 ~~V~V~aG~~~~~L~~~l~-~~Gl~~~ 207 (298)
..|.|.||.+..|+++.+. ++|+.|.
T Consensus 12 t~V~vrpg~ti~d~L~~~c~kr~l~~~ 38 (72)
T cd01760 12 TVVPVRPGMSVRDVLAKACKKRGLNPE 38 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCHH
Confidence 6899999999999887766 7888744
No 55
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.49 E-value=4.6e+02 Score=25.10 Aligned_cols=84 Identities=17% Similarity=0.027 Sum_probs=48.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEe----CCCcCCC-CCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEc
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAAR----GHGHSLQ-GQAQAHQGVVINMESLQGPKMQVYAENSFYVDVS 187 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vr----GgGhs~~-g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~ 187 (298)
=..|+.|.+.+|+..+++++.+ .+-|+.+| ..+..+. .....++.-.+. +.+- ..+.+++ ....+.
T Consensus 165 nl~V~~Pad~~e~~~~l~~a~~----~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~---~Gk~-~v~r~G~-dvtIia 235 (356)
T PLN02683 165 GLKVLAPYSSEDARGLLKAAIR----DPDPVVFLENELLYGESFPVSAEVLDSSFVLP---IGKA-KIEREGK-DVTIVA 235 (356)
T ss_pred CCEEEEeCCHHHHHHHHHHHHh----CCCcEEEEEehhhccCCCCCCCCCCCcccccc---CCee-EEEEcCC-CEEEEE
Confidence 3478999999999999999987 77799887 3333221 111000001111 1221 1122333 466677
Q ss_pred CCccHHHHHH---HHHhCCCc
Q 022399 188 GGELWINILH---ESVKYGLA 205 (298)
Q Consensus 188 aG~~~~~L~~---~l~~~Gl~ 205 (298)
.|....+..+ .|.+.|+.
T Consensus 236 ~G~~v~~Al~Aa~~L~~~GI~ 256 (356)
T PLN02683 236 FSKMVGYALKAAEILAKEGIS 256 (356)
T ss_pred ccHHHHHHHHHHHHHHhcCCC
Confidence 7877776654 44567765
No 56
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=24.42 E-value=1.3e+02 Score=25.56 Aligned_cols=31 Identities=16% Similarity=0.054 Sum_probs=25.5
Q ss_pred CccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEe
Q 022399 112 LPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAAR 146 (298)
Q Consensus 112 ~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vr 146 (298)
.=..|+.|.+.+|...+++.+.+ .+-|+.++
T Consensus 134 Pg~~V~~Psd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 134 PGLKVVAPSTPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred CCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 44589999999999999999998 66677653
No 57
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=24.27 E-value=1.9e+02 Score=32.23 Aligned_cols=104 Identities=7% Similarity=-0.070 Sum_probs=59.5
Q ss_pred CCccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCC-CCccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcCC
Q 022399 111 LLPSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQ-GQAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGG 189 (298)
Q Consensus 111 ~~p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~-g~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG 189 (298)
..-.....|.|.+|+.++.+ . .. ......|.+... -....+-...||.+..... ..++.++ .-+.++|+
T Consensus 212 ~~~~~W~~P~sl~eL~~~~~--~-----~~-~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el-~~~~~~~-~gi~lGa~ 281 (1257)
T KOG0430|consen 212 NDGIRWYWPVSLEELFELKA--N-----KP-DAKLVAGNTAHGVYRRSPDYQKFIDVSGVPEL-KALNVDD-NGLELGAA 281 (1257)
T ss_pred CCCcEEeCcccHHHHHHHHh--c-----Cc-ceEEEeccccceEEeccCCCcceechhcCchh-hhcccCC-CceEEccc
Confidence 34456788999999999987 2 21 233333333321 1111123456777665532 1223223 57999999
Q ss_pred ccHHHHHHHHHhCCCc---------------cccCCCCCCceeecccccC
Q 022399 190 ELWINILHESVKYGLA---------------PKSWTDYLHLTVGGTLSNA 224 (298)
Q Consensus 190 ~~~~~L~~~l~~~Gl~---------------~~~~~~~~~~tVGG~v~na 224 (298)
+++.++.+.+.+.--. ..+.+--...|+||.+..+
T Consensus 282 ~sls~~~~~l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~ 331 (1257)
T KOG0430|consen 282 LSLSETMELLRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTK 331 (1257)
T ss_pred ccHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEec
Confidence 9999888777743211 2233334556899999754
No 58
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=24.08 E-value=1.5e+02 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=24.9
Q ss_pred cEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCC
Q 022399 114 SAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGH 148 (298)
Q Consensus 114 ~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGg 148 (298)
..|+.|.+.+|+..+++.+.+ ...+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~--~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIR--RESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH--SSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHH--hCCCCeEEEEee
Confidence 579999999999999999987 112367777654
No 59
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=21.66 E-value=1.5e+02 Score=24.49 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=19.3
Q ss_pred cEEEECCCHHHHHHHHHHHHH
Q 022399 114 SAVLHPNSVSDIATTVKHIWE 134 (298)
Q Consensus 114 ~~vv~P~s~edV~~ivk~a~~ 134 (298)
..|+.|.+.+|+..+++.+.+
T Consensus 134 ~~v~~P~~~~e~~~~l~~a~~ 154 (168)
T smart00861 134 LKVVAPSDPAEAKGLLRAAIR 154 (168)
T ss_pred cEEEecCCHHHHHHHHHHHHh
Confidence 568999999999999999986
No 60
>smart00455 RBD Raf-like Ras-binding domain.
Probab=20.99 E-value=1.4e+02 Score=21.44 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEcCCccHHHHHHHHH-hCCCccc
Q 022399 182 FYVDVSGGELWINILHESV-KYGLAPK 207 (298)
Q Consensus 182 ~~V~V~aG~~~~~L~~~l~-~~Gl~~~ 207 (298)
..|.+.||.+..|+++.+. ++|+.|.
T Consensus 12 ~~V~vrpg~tl~e~L~~~~~kr~l~~~ 38 (70)
T smart00455 12 TVVKVRPGKTVRDALAKALKKRGLNPE 38 (70)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCHH
Confidence 5789999999999887766 7899743
No 61
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=20.21 E-value=5.4e+02 Score=24.16 Aligned_cols=84 Identities=12% Similarity=-0.042 Sum_probs=48.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHHhCCCCCceEEEeCCCcCCCC-CccCCCeEEEEcCCCCCCeEEEcCCCceEEEEcCCcc
Q 022399 113 PSAVLHPNSVSDIATTVKHIWEMGSHSELTVAARGHGHSLQG-QAQAHQGVVINMESLQGPKMQVYAENSFYVDVSGGEL 191 (298)
Q Consensus 113 p~~vv~P~s~edV~~ivk~a~~~~~~~~~~v~vrGgGhs~~g-~~~~~~gvvIdm~~l~~i~i~i~~~~~~~V~V~aG~~ 191 (298)
=..|+.|.+.+|+..+++.+.+ .+-|+.++=.+.-+.. ....++.--+. +.+. ..+.++. ....+.-|.+
T Consensus 142 ~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~~~~~~~~~~~~~~~~~---~Gk~-~vl~~G~-di~iva~G~~ 212 (327)
T PRK09212 142 GLKVVAPYFAADCKGLLKTAIR----DPNPVIFLENEILYGHSHEVPEEEESIP---IGKA-AILREGS-DVTIVTFSIQ 212 (327)
T ss_pred CCEEEeeCCHHHHHHHHHHHHh----CCCcEEEEEchhhcCCCCCCCCCCcccc---CCee-EEEEeCC-CEEEEEccHH
Confidence 3478999999999999999998 7789988654333321 01111100111 1121 1122333 5677788888
Q ss_pred HHHHHHHH---HhCCCc
Q 022399 192 WINILHES---VKYGLA 205 (298)
Q Consensus 192 ~~~L~~~l---~~~Gl~ 205 (298)
.....+.+ .+.|..
T Consensus 213 ~~~a~eAa~~L~~~Gi~ 229 (327)
T PRK09212 213 VKLALEAAELLEKEGIS 229 (327)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 77765554 456654
Done!