Query 022400
Match_columns 298
No_of_seqs 150 out of 369
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02902 pantothenate kinase 100.0 1E-59 2.3E-64 483.8 25.7 265 4-280 494-766 (876)
2 KOG4584 Uncharacterized conser 100.0 8.8E-57 1.9E-61 413.4 24.5 265 11-284 5-271 (348)
3 COG1578 Uncharacterized conser 100.0 3.1E-46 6.7E-51 340.3 17.6 210 46-274 1-212 (285)
4 PF01937 DUF89: Protein of unk 100.0 8.3E-37 1.8E-41 293.8 16.2 216 48-272 1-247 (355)
5 KOG3870 Uncharacterized conser 99.4 4E-12 8.8E-17 122.3 15.6 154 114-271 136-299 (434)
6 PRK11557 putative DNA-binding 79.3 25 0.00055 32.3 10.8 95 150-250 116-211 (278)
7 COG1737 RpiR Transcriptional r 76.0 66 0.0014 30.0 12.7 123 117-250 90-213 (281)
8 PRK15482 transcriptional regul 60.3 1.3E+02 0.0029 27.7 11.2 122 118-250 96-218 (285)
9 PF03033 Glyco_transf_28: Glyc 50.5 20 0.00043 28.8 3.5 35 216-251 2-36 (139)
10 PRK11543 gutQ D-arabinose 5-ph 49.2 1.5E+02 0.0032 27.8 9.6 110 132-250 14-125 (321)
11 PF06838 Met_gamma_lyase: Meth 48.3 8.8 0.00019 38.0 1.2 120 102-222 54-198 (403)
12 PRK07535 methyltetrahydrofolat 41.2 1.9E+02 0.0041 26.9 8.9 145 136-295 13-167 (261)
13 PRK09754 phenylpropionate diox 39.6 72 0.0016 30.9 6.1 52 197-256 131-182 (396)
14 COG0326 HtpG Molecular chapero 38.9 3.3E+02 0.0072 28.9 10.9 114 115-247 337-456 (623)
15 PTZ00272 heat shock protein 83 38.2 3.6E+02 0.0077 29.0 11.3 110 118-247 379-493 (701)
16 PRK11337 DNA-binding transcrip 37.4 3.3E+02 0.0072 25.0 11.3 95 150-250 128-223 (292)
17 PF07592 DDE_Tnp_ISAZ013: Rhod 37.2 37 0.00081 32.7 3.5 53 194-247 161-220 (311)
18 COG0062 Uncharacterized conser 37.1 79 0.0017 28.6 5.4 36 212-252 49-87 (203)
19 PLN00016 RNA-binding protein; 36.7 56 0.0012 31.4 4.8 40 212-252 52-91 (378)
20 PRK02947 hypothetical protein; 36.4 2E+02 0.0044 26.3 8.2 39 211-251 105-143 (246)
21 PF00183 HSP90: Hsp90 protein; 34.6 2.5E+02 0.0055 29.0 9.3 46 200-248 276-321 (531)
22 PRK07231 fabG 3-ketoacyl-(acyl 34.4 67 0.0015 28.1 4.6 34 213-251 6-39 (251)
23 cd03784 GT1_Gtf_like This fami 34.4 61 0.0013 30.9 4.6 36 214-250 2-37 (401)
24 PRK13512 coenzyme A disulfide 34.2 73 0.0016 31.4 5.2 51 198-254 134-184 (438)
25 PF13477 Glyco_trans_4_2: Glyc 34.1 58 0.0013 25.9 3.8 36 214-253 1-36 (139)
26 PF08328 ASL_C: Adenylosuccina 33.8 41 0.00088 27.9 2.7 27 102-128 54-80 (115)
27 PRK06138 short chain dehydroge 33.8 88 0.0019 27.4 5.2 35 213-252 6-40 (252)
28 PRK09860 putative alcohol dehy 33.7 1.6E+02 0.0036 28.7 7.5 67 196-267 15-82 (383)
29 cd01080 NAD_bind_m-THF_DH_Cycl 33.6 1.2E+02 0.0027 26.2 6.0 59 212-287 44-102 (168)
30 PRK04965 NADH:flavorubredoxin 32.9 1.1E+02 0.0025 29.2 6.2 50 199-256 130-179 (377)
31 TIGR00514 accC acetyl-CoA carb 32.7 46 0.001 33.0 3.6 30 213-248 3-32 (449)
32 PRK07890 short chain dehydroge 32.6 1.2E+02 0.0027 26.6 6.0 34 213-251 6-39 (258)
33 TIGR03127 RuMP_HxlB 6-phospho 32.6 88 0.0019 26.7 4.9 36 212-249 72-107 (179)
34 PF13460 NAD_binding_10: NADH( 32.2 68 0.0015 26.8 4.1 24 228-252 10-33 (183)
35 COG4100 Cystathionine beta-lya 32.0 46 0.00099 32.4 3.2 167 52-222 10-209 (416)
36 cd05013 SIS_RpiR RpiR-like pro 31.7 2.3E+02 0.005 22.0 7.0 54 195-250 43-96 (139)
37 PF00070 Pyr_redox: Pyridine n 31.3 1.5E+02 0.0032 21.6 5.4 34 229-264 11-44 (80)
38 PRK05653 fabG 3-ketoacyl-(acyl 31.2 69 0.0015 27.7 4.1 34 213-251 6-39 (246)
39 PLN03050 pyridoxine (pyridoxam 31.1 1.4E+02 0.0031 27.5 6.3 32 213-248 61-94 (246)
40 PRK05912 tyrosyl-tRNA syntheta 31.1 3E+02 0.0066 27.3 9.0 71 186-258 6-83 (408)
41 PRK12829 short chain dehydroge 30.9 1E+02 0.0023 27.1 5.3 35 212-251 11-45 (264)
42 cd03808 GT1_cap1E_like This fa 30.9 65 0.0014 28.6 3.9 39 214-253 1-39 (359)
43 PRK08628 short chain dehydroge 30.2 1.3E+02 0.0028 26.5 5.8 35 213-252 8-42 (258)
44 PRK12748 3-ketoacyl-(acyl-carr 30.0 1.4E+02 0.003 26.5 5.9 35 212-250 5-40 (256)
45 PRK08220 2,3-dihydroxybenzoate 29.5 1.4E+02 0.003 26.1 5.8 53 213-270 9-71 (252)
46 PRK06398 aldose dehydrogenase; 29.0 1.7E+02 0.0036 26.2 6.3 52 213-269 7-66 (258)
47 COG0162 TyrS Tyrosyl-tRNA synt 28.8 1.5E+02 0.0033 29.6 6.4 66 197-264 18-88 (401)
48 cd06167 LabA_like LabA_like pr 28.7 1.2E+02 0.0025 24.8 4.8 33 212-250 100-132 (149)
49 PF05226 CHASE2: CHASE2 domain 28.7 1.7E+02 0.0037 27.2 6.5 64 185-249 51-117 (310)
50 PRK07326 short chain dehydroge 28.4 96 0.0021 26.9 4.5 34 213-251 7-40 (237)
51 PRK08591 acetyl-CoA carboxylas 28.3 64 0.0014 31.9 3.7 29 213-247 3-31 (451)
52 PRK05854 short chain dehydroge 28.0 84 0.0018 29.3 4.3 34 212-250 14-47 (313)
53 PRK07806 short chain dehydroge 27.0 1E+02 0.0022 27.0 4.5 35 212-251 6-40 (248)
54 PF01488 Shikimate_DH: Shikima 26.9 87 0.0019 25.7 3.7 33 212-250 12-45 (135)
55 PRK07577 short chain dehydroge 25.7 1.2E+02 0.0026 26.2 4.6 52 213-269 4-63 (234)
56 TIGR03385 CoA_CoA_reduc CoA-di 25.6 2E+02 0.0043 28.0 6.6 50 199-254 124-173 (427)
57 smart00450 RHOD Rhodanese Homo 25.3 1.8E+02 0.0039 20.9 5.0 35 212-251 56-90 (100)
58 PF13344 Hydrolase_6: Haloacid 25.2 1.5E+02 0.0032 23.3 4.6 42 198-244 17-58 (101)
59 TIGR00234 tyrS tyrosyl-tRNA sy 24.8 3.9E+02 0.0084 26.3 8.4 57 199-258 19-80 (377)
60 TIGR01832 kduD 2-deoxy-D-gluco 24.7 1.7E+02 0.0037 25.5 5.5 35 212-251 5-39 (248)
61 PRK05993 short chain dehydroge 24.7 1.4E+02 0.003 27.0 5.0 52 213-269 5-69 (277)
62 KOG1208 Dehydrogenases with di 24.7 1.2E+02 0.0025 29.2 4.6 35 212-251 35-69 (314)
63 PRK07178 pyruvate carboxylase 24.7 80 0.0017 31.7 3.7 30 213-248 3-32 (472)
64 COG4536 CorB Putative Mg2+ and 24.5 64 0.0014 32.2 2.8 99 113-231 214-314 (423)
65 PF01380 SIS: SIS domain SIS d 24.2 96 0.0021 24.3 3.4 57 192-250 32-89 (131)
66 cd08173 Gro1PDH Sn-glycerol-1- 24.1 2.6E+02 0.0056 26.6 6.9 50 212-269 25-74 (339)
67 PF06967 Mo-nitro_C: Mo-depend 24.1 5 0.00011 31.2 -3.9 27 200-226 54-80 (84)
68 PRK05786 fabG 3-ketoacyl-(acyl 24.0 1.2E+02 0.0026 26.3 4.3 35 212-251 5-39 (238)
69 PRK07478 short chain dehydroge 23.9 1.7E+02 0.0038 25.7 5.4 35 213-252 7-41 (254)
70 PRK07904 short chain dehydroge 23.9 1.1E+02 0.0024 27.4 4.1 36 212-252 8-44 (253)
71 PF02093 Gag_p30: Gag P30 core 23.9 47 0.001 30.3 1.6 21 42-62 101-121 (211)
72 PRK07775 short chain dehydroge 23.7 1.9E+02 0.0041 26.1 5.7 33 213-250 11-43 (274)
73 cd03802 GT1_AviGT4_like This f 23.7 1.3E+02 0.0028 27.1 4.6 37 214-252 2-47 (335)
74 PRK07035 short chain dehydroge 23.6 2.6E+02 0.0056 24.5 6.5 34 213-251 9-42 (252)
75 PRK08213 gluconate 5-dehydroge 23.5 1.2E+02 0.0026 26.9 4.2 36 212-252 12-47 (259)
76 PF01936 NYN: NYN domain; Int 23.5 75 0.0016 25.6 2.7 31 212-248 96-126 (146)
77 PRK06924 short chain dehydroge 23.4 2.1E+02 0.0046 25.0 5.8 52 213-269 2-70 (251)
78 PF09840 DUF2067: Uncharacteri 23.3 1.6E+02 0.0034 26.4 4.9 43 233-277 91-133 (190)
79 PRK00726 murG undecaprenyldiph 23.2 1.3E+02 0.0027 28.2 4.5 38 213-251 2-39 (357)
80 PRK06179 short chain dehydroge 23.1 2.2E+02 0.0047 25.4 5.9 52 213-269 5-67 (270)
81 PRK08703 short chain dehydroge 23.0 1.4E+02 0.003 26.0 4.6 36 212-252 6-41 (239)
82 PRK09564 coenzyme A disulfide 23.0 2.2E+02 0.0047 27.8 6.3 50 200-255 137-186 (444)
83 PRK07454 short chain dehydroge 22.9 1.4E+02 0.003 26.1 4.5 34 213-251 7-40 (241)
84 KOG0385 Chromatin remodeling c 22.9 65 0.0014 35.0 2.6 58 182-247 436-493 (971)
85 PF04127 DFP: DNA / pantothena 22.8 1.7E+02 0.0037 25.8 5.0 57 215-274 20-84 (185)
86 TIGR01133 murG undecaprenyldip 22.8 1.2E+02 0.0026 28.0 4.2 35 214-249 2-36 (348)
87 PTZ00130 heat shock protein 90 22.7 1E+03 0.022 26.3 11.5 46 199-247 537-582 (814)
88 PRK05866 short chain dehydroge 22.6 1.9E+02 0.0041 26.7 5.5 34 213-251 41-74 (293)
89 PRK15454 ethanol dehydrogenase 22.4 3.2E+02 0.0069 26.9 7.3 61 199-267 36-100 (395)
90 PRK06196 oxidoreductase; Provi 22.3 1.3E+02 0.0027 28.0 4.3 35 212-251 26-60 (315)
91 PF02441 Flavoprotein: Flavopr 22.2 2E+02 0.0044 23.2 5.1 35 213-249 1-35 (129)
92 PF03853 YjeF_N: YjeF-related 22.2 1.3E+02 0.0027 25.9 3.9 31 212-246 25-57 (169)
93 PF04723 GRDA: Glycine reducta 22.1 2.7E+02 0.0058 23.9 5.7 48 212-264 5-53 (150)
94 PRK06139 short chain dehydroge 22.1 1.5E+02 0.0032 28.2 4.8 35 213-252 8-42 (330)
95 PRK05557 fabG 3-ketoacyl-(acyl 21.9 1.4E+02 0.0031 25.6 4.4 35 213-252 6-40 (248)
96 PRK12825 fabG 3-ketoacyl-(acyl 21.7 1.4E+02 0.003 25.8 4.2 34 213-251 7-40 (249)
97 PRK07856 short chain dehydroge 21.7 2.3E+02 0.0049 25.0 5.7 52 213-269 7-69 (252)
98 PRK08264 short chain dehydroge 21.5 1.6E+02 0.0034 25.6 4.6 35 213-252 7-42 (238)
99 TIGR01830 3oxo_ACP_reduc 3-oxo 21.5 2.1E+02 0.0046 24.5 5.4 30 218-251 3-32 (239)
100 KOG0020 Endoplasmic reticulum 21.3 1.9E+02 0.0042 30.0 5.5 53 193-248 514-566 (785)
101 PRK08017 oxidoreductase; Provi 21.1 1.4E+02 0.0031 26.2 4.2 34 213-251 3-36 (256)
102 PRK09072 short chain dehydroge 21.0 1.5E+02 0.0032 26.4 4.4 33 215-251 7-39 (263)
103 PRK07060 short chain dehydroge 21.0 1.5E+02 0.0032 25.8 4.3 35 212-251 9-43 (245)
104 PF13528 Glyco_trans_1_3: Glyc 21.0 1.4E+02 0.0031 27.3 4.4 37 214-252 2-38 (318)
105 cd08171 GlyDH-like2 Glycerol d 20.9 2.6E+02 0.0055 26.8 6.2 51 212-267 22-72 (345)
106 COG4821 Uncharacterized protei 20.9 2.7E+02 0.0058 25.7 5.8 49 198-248 90-138 (243)
107 cd01523 RHOD_Lact_B Member of 20.9 2.7E+02 0.0058 21.0 5.2 34 212-251 61-94 (100)
108 PF13439 Glyco_transf_4: Glyco 20.8 1.1E+02 0.0023 24.5 3.1 29 223-253 13-41 (177)
109 PRK12743 oxidoreductase; Provi 20.6 1.4E+02 0.003 26.5 4.1 33 213-250 3-35 (256)
110 PRK06914 short chain dehydroge 20.6 1.6E+02 0.0034 26.5 4.5 34 213-251 4-37 (280)
111 TIGR02415 23BDH acetoin reduct 20.6 1.5E+02 0.0032 26.0 4.2 34 213-251 1-34 (254)
112 PRK06197 short chain dehydroge 20.5 1.3E+02 0.0029 27.6 4.1 34 212-250 16-49 (306)
113 TIGR01829 AcAcCoA_reduct aceto 20.5 1.5E+02 0.0033 25.6 4.2 32 214-250 2-33 (242)
114 PRK07062 short chain dehydroge 20.5 2.4E+02 0.0051 25.0 5.6 34 213-251 9-42 (265)
115 cd07766 DHQ_Fe-ADH Dehydroquin 20.5 3.7E+02 0.0081 25.2 7.2 52 212-269 23-74 (332)
116 TIGR01963 PHB_DH 3-hydroxybuty 20.5 1.4E+02 0.0031 26.0 4.1 34 213-251 2-35 (255)
117 PRK13963 unkown domain/putativ 20.4 3.6E+02 0.0078 25.4 6.7 64 51-121 195-258 (258)
118 PRK08278 short chain dehydroge 20.3 3.4E+02 0.0073 24.4 6.6 35 213-252 7-41 (273)
119 PRK12937 short chain dehydroge 20.2 1.3E+02 0.0028 26.1 3.8 36 212-252 5-40 (245)
120 PRK06057 short chain dehydroge 20.2 1.4E+02 0.0031 26.4 4.0 36 212-252 7-42 (255)
121 PLN02986 cinnamyl-alcohol dehy 20.1 1.6E+02 0.0035 27.1 4.6 34 214-251 6-39 (322)
122 PRK06171 sorbitol-6-phosphate 20.0 3.6E+02 0.0078 23.8 6.7 52 213-269 10-71 (266)
123 COG2910 Putative NADH-flavin r 20.0 1E+02 0.0022 28.1 2.9 43 215-262 3-48 (211)
No 1
>PLN02902 pantothenate kinase
Probab=100.00 E-value=1e-59 Score=483.79 Aligned_cols=265 Identities=36% Similarity=0.624 Sum_probs=241.5
Q ss_pred CCCCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHhhhccHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHH
Q 022400 4 ESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSE 82 (298)
Q Consensus 4 ~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~Ci~C~~~qa~~~~-~~~~~~~~~~~~~~~~~~ 82 (298)
+++++|||||.||. +|.|||+||+ +.++| +||++||.+++|.|.+||.... ..+++.+|+++|.++|.+
T Consensus 494 ~~~l~~~pLL~~~~--~Y~p~t~d~~--d~~~r------~yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~ 563 (876)
T PLN02902 494 VPTLEVFPLLADPK--TYEPNTIDLS--DQSER------EYWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSA 563 (876)
T ss_pred ccccccccccCCCC--CCCCCcccCC--ccHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 46799999999998 9999999995 22255 4999999999999999998654 778999999999999999
Q ss_pred HHHhccCCCCCCCCChhHhHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHh
Q 022400 83 ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAG 162 (298)
Q Consensus 83 ~L~~l~~~p~~~~~~~~~r~~~~~~~~~~~~~g~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaG 162 (298)
+|.+++++|.+||.+. ++.+++++|+|++++|++|||+++|+++|+.|++++|.++++++++. +++||.+++|+++||
T Consensus 564 ~L~~l~~~p~a~G~~~-~~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiAG 641 (876)
T PLN02902 564 HLARLMEEPAAYGKLG-LANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLAA 641 (876)
T ss_pred HHHHHHhCccccCCch-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHH
Confidence 9999999999999887 59999999999999999999999999999999999999999998765 478999999999999
Q ss_pred hhhhhchhhhhhhhccC-cccHHHHHhhhcCCCCCCCCHHHHHHHhcc------cCCCeEEEEecCCCcchhcchHHHHH
Q 022400 163 NIFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFAR 235 (298)
Q Consensus 163 N~iD~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~------~~~k~ilyl~DNaGEdiVfD~lpli~ 235 (298)
|+||||++..+++++.+ .+++++.+++++++||.+||+++|+++|.+ .++|++|||+||||+|||||+|||||
T Consensus 642 NifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiR 721 (876)
T PLN02902 642 NIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLAR 721 (876)
T ss_pred hhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHH
Confidence 99999998776666544 367899999999999999999999999974 36899999999999669999999999
Q ss_pred HHHhCCCEEEEEecCCCccccCCHHHHHHHHHHHhhhhhhhhhcc
Q 022400 236 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKVTENMKIKSKSY 280 (298)
Q Consensus 236 ~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~~~a~v~~il~~~~ 280 (298)
+|+++|++|+++||+.|+|||||++|+...+.+++..|+++..+.
T Consensus 722 ELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~ 766 (876)
T PLN02902 722 ELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAA 766 (876)
T ss_pred HHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHH
Confidence 999999999999999999999999999999999988888887664
No 2
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=8.8e-57 Score=413.40 Aligned_cols=265 Identities=58% Similarity=0.893 Sum_probs=246.4
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHhhhccHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhccC
Q 022400 11 PLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKK 89 (298)
Q Consensus 11 pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~Ci~C~~~qa~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~ 89 (298)
+++.+|. .|+|+|.|++ +.+|++.||++||.+.||.|.++|.+++ ..+|+..|+++|.++|..+|..+++
T Consensus 5 ~~~~~~~--~y~p~t~d~~-------k~~~a~~~Wi~~f~~~ip~f~krA~asq~~~~DA~~RAe~F~~~y~~~Le~lk~ 75 (348)
T KOG4584|consen 5 NYRACTI--PYRFPTDDLN-------KDTPAEIYWINVFSNSIPSFKKRAEASQENVPDAPARAEKFAQRYAGILEDLKK 75 (348)
T ss_pred ccccCCC--CCCCCCCCcc-------ccchhhhHHHHHHHHHhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 4555655 6666666664 4477888999999999999999999777 6899999999999999999999999
Q ss_pred CCCCCCCChhHhHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhch
Q 022400 90 DPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGS 169 (298)
Q Consensus 90 ~p~~~~~~~~~r~~~~~~~~~~~~~g~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~ 169 (298)
+|.+||.||..+.+++++|+|++++||.|||+++|+++|..|++++|.+.+.+|++.+...++.+++|+.+|||+||||+
T Consensus 76 ~P~a~G~~~~g~~Ll~lRE~~LrE~gF~Diy~kvK~~ENa~Aia~fP~vv~~lDal~dE~~Rle~LvrGilAGNiFDwGa 155 (348)
T KOG4584|consen 76 DPEAYGGPPLGINLLRLREQILRELGFRDIYKKVKDEENAKAIALFPQVVRLLDALEDEGTRLENLVRGILAGNIFDWGA 155 (348)
T ss_pred ChHhcCCCcchHHHHHHHHHHHHHhCCccHHHHHHHhhhhhHHHHhHHHHHHHhhhcchhHHHHHHHHHHHhcchhhhHH
Confidence 99999998877789999999999999999999999999999999999999999999987789999999999999999999
Q ss_pred hhhhhhhccC-cccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 170 AQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 170 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
+..+.+++.+ .|+|..+++++.+|||.+||++.|.+++.+.|+|++++|+||||.||||+++||+|+|+++|++|++++
T Consensus 156 ~~~~~il~~~~~f~f~~a~~~l~~RPWl~D~ld~f~~r~~~~p~K~~lif~DNSG~DvILGilPf~Rellr~gt~vil~a 235 (348)
T KOG4584|consen 156 KAVVKILESASVFGFLAALQNLESRPWLVDDLDSFLARLKGKPHKCALIFVDNSGFDVILGILPFARELLRRGTEVILCA 235 (348)
T ss_pred HHHHHHHhccccchHHHHHhhhhcCCeeeccHHHHHHHhcCCCcceEEEEecCCCcceeeeecHHHHHHHhCCCeEEEEe
Confidence 9998888765 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCHHHHHHHHHHHhhhhhhhhhcccccc
Q 022400 249 NDLPSINDVTYPELIEIMSKVTENMKIKSKSYNYFF 284 (298)
Q Consensus 249 k~~PilNDaT~~Da~~~l~~~a~v~~il~~~~~~~~ 284 (298)
++.|++||+|..|+...+.+++..++++..+..-.-
T Consensus 236 ns~palNdvt~~el~~l~~~~~~~~~~l~~~~~~~~ 271 (348)
T KOG4584|consen 236 NSSPALNDVTYSELKELAAELANDCNVLLKAIDTGQ 271 (348)
T ss_pred cCcchhccccHHHHHHHHHhhccCChHHHHHhhhcc
Confidence 999999999999999999999999999988876654
No 3
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.1e-46 Score=340.27 Aligned_cols=210 Identities=17% Similarity=0.266 Sum_probs=190.3
Q ss_pred HHhhhccHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHhHHHHHHHHHHHHcCCccchHHHH
Q 022400 46 LDLFLNSIPSFKKRAESDP-TVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVK 124 (298)
Q Consensus 46 ~~~~~~Ci~C~~~qa~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~~r~~~~~~~~~~~~~g~~DPY~~~K 124 (298)
|++.++|.+|+++|+.... ..+++++++.+.++..++.|.+... ....|+ +..+.+|+.+++.+|.+|||++.|
T Consensus 1 mk~~p~C~~C~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~y~---~~~~~a--~~~t~ihr~v~k~~g~eDPyke~K 75 (285)
T COG1578 1 MKASPECLPCLLRQAVNAVKLATDDEDLRSRIMSEALKLLSEEYG---ESAVPA--IAGTLIHREVYKILGNEDPYKEYK 75 (285)
T ss_pred CCCcccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhC---cCCCcH--HHHHHHHHHHHHHcCCCCcHHHHH
Confidence 5678999999999999877 7788888999999999999998642 223333 589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhchhhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHH
Q 022400 125 DEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFK 204 (298)
Q Consensus 125 ~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~ 204 (298)
+++|++|++++|.+++.+ ++..++|++|+++|++||+||||+.+.+ .+++++.+.++++.++.+||+++|.
T Consensus 76 ~r~NeiA~~vl~~vr~~~---~~~~~dl~~Avk~ai~GN~iDfgv~G~~------~~~lee~~~~~~~~~l~i~d~~k~~ 146 (285)
T COG1578 76 RRANEIALKVLPKVRENI---EDTPEDLKTAVKLAIVGNVIDFGVLGFS------PFDLEEEVEKLLDAELYIDDSPKLL 146 (285)
T ss_pred HHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHhcceeeccccCC------HhHHHHHHHHhhcCcccccchHHHH
Confidence 999999999999999955 4456789999999999999999998621 4789999999999999999999999
Q ss_pred HHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHH-HHHHHhhhhh
Q 022400 205 VKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIE-IMSKVTENMK 274 (298)
Q Consensus 205 ~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~-~l~~~a~v~~ 274 (298)
+.|++ + +|+|++||||| |+||++ |++.|+++|.+|+++|||+||+||||++|+++ +++++|++++
T Consensus 147 ~~l~~--a-~VlYl~DNaGE-i~FD~v-lie~ik~~~~~vv~vVrg~PIlnDaT~EDak~~~i~~i~~vit 212 (285)
T COG1578 147 ELLKN--A-SVLYLTDNAGE-IVFDKV-LIEVIKELGKKVVVVVRGGPILNDATMEDAKEAGIDEIAKVIT 212 (285)
T ss_pred HHhcc--C-cEEEEecCCcc-HHHHHH-HHHHHHhcCCceEEEEcCCceechhhHHHHHHcCcchhheeec
Confidence 99987 6 99999999999 999997 99999999999999999999999999999999 9999998877
No 4
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=100.00 E-value=8.3e-37 Score=293.81 Aligned_cols=216 Identities=23% Similarity=0.370 Sum_probs=172.2
Q ss_pred hhhccHHHHHHHhhcCC-CC-CCHHHHHHHHHHHHHHHHHhccCCCCCCCCChh-------------------HhHHHHH
Q 022400 48 LFLNSIPSFKKRAESDP-TV-PDAHVRAEKFAQRYSEILEDMKKDPETHGGPPD-------------------CILLCRL 106 (298)
Q Consensus 48 ~~~~Ci~C~~~qa~~~~-~~-~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~-------------------~r~~~~~ 106 (298)
++.+|+||+++|+.... .. .+.++..+++.+++.+.+.++.. .++++. ....+.+
T Consensus 1 T~~~c~p~il~~~i~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~pWL~~e~yl 76 (355)
T PF01937_consen 1 TFRECLPCILTQAIDSLRRANDDAEEDIKEIIEELSKLRYELDT----NKPLPPITDDGPDSEEGPTWFNAPWLFAECYL 76 (355)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH----TTCGHHH-HHHHHHSTT-BTTBSBHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhc----CCCCCccccccccccccccccccchHHHHHHH
Confidence 46899999999998766 33 33477788899999998888773 455554 0239999
Q ss_pred HHHHHHHcC------CccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhchhhhhhhhccCc
Q 022400 107 REQVLRELG------FRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180 (298)
Q Consensus 107 ~~~~~~~~g------~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~~~~~~~~~~~~ 180 (298)
|+++++.+| ..|||+++|+++|+.|++.++.+.+.+++.++..++|.+++++|+|||++|||+....+. .+
T Consensus 77 yr~i~~~~~~~~~~~~~DPf~~~K~~~~~~al~~~~~l~~~l~~~~~~~~~~~~~l~~al~GN~~Dls~~~~~~~---~~ 153 (355)
T PF01937_consen 77 YRRILEIFGYSSYLKNYDPFAEQKQESNEIALKLIPELAERLESLPDPRERFREALKLALWGNIIDLSLSPGHEV---GE 153 (355)
T ss_dssp HHHHHHHHTHSTTTTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCG--CCCHTSHHC---HH
T ss_pred HHHHHHhcccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCcccCccccchh---cc
Confidence 999999999 999999999999999999999999999876654466999999999999999999762111 13
Q ss_pred ccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCC-cchhcchHHHHHHHHh--CCCEEEEEecCCC-cccc
Q 022400 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSG-ADIILGILPFARELLR--RGTQVILAANDLP-SIND 256 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaG-EdiVfD~lpli~~L~~--~g~~V~lavk~~P-ilND 256 (298)
.+..+.+.+.++++|.+||+++|.+.|++.++++|+||+|||| | +|||++ |+++|++ .|.+|+++||++| ++||
T Consensus 154 ~~~~~~~~~~~~~~~l~dd~~~~~~~l~~~~~~~v~~v~DNaG~E-lv~D~l-l~~~L~~~~~~~~V~~~vK~~P~~vnD 231 (355)
T PF01937_consen 154 FDQEEEIEKALEKPILVDDSDEFWEKLENKKAKRVDIVLDNAGFE-LVFDLL-LAEFLLESGPGSKVVFHVKGIPWFVND 231 (355)
T ss_dssp HHHHHHHHHHHHSTESEE-HHHHHHHHCTCHTSEEEEE--BTTHH-HHHHHH-HHHHHHHTCTTSEEEEEEBSS--TTTB
T ss_pred cchHHHHHHhhhcCCccccHHHHHHHhhccCCCEEEEEEcCCCcH-HHhhHH-HHHHHHHhCCCCeEEEEECCCCCeecc
Confidence 4567777888889999999999999994334899999999999 7 999998 9999999 7999999999999 9999
Q ss_pred CCHHHHHHHHHHHhhh
Q 022400 257 VTYPELIEIMSKVTEN 272 (298)
Q Consensus 257 aT~~Da~~~l~~~a~v 272 (298)
||++|+...|+.++..
T Consensus 232 vT~~D~~~~l~~l~~~ 247 (355)
T PF01937_consen 232 VTMEDAEWLLERLADS 247 (355)
T ss_dssp -BHHHHHHHHHHHH-T
T ss_pred CcHHHHHHHHHHHHhc
Confidence 9999999555544433
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4e-12 Score=122.32 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=122.3
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchH----HHHHHHHHHHHhhhhhhchhhhhhhhccCcccHHHHHhh
Q 022400 114 LGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGK----RVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQN 189 (298)
Q Consensus 114 ~g~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d----~l~~a~r~alaGN~iD~G~~~~~~~~~~~~~~~~~~~~~ 189 (298)
...-|+|.++|++--......+..+..+...+..+.+ -+.++++++++||..|++.....+. ..+....+++++
T Consensus 136 l~~yD~F~~~K~~~~~~s~~~i~ela~~~~~l~~~~~~~~~~F~~llkisLWGN~~Dlsl~~~~~~--~~~~q~~~~va~ 213 (434)
T KOG3870|consen 136 LKKYDYFFDQKESTLTSSLPAIEELAKRTRGLERSLESIHEVFVELLKISLWGNATDLSLNGGTES--KQNIQVLKAVAD 213 (434)
T ss_pred hhhcChHHHHhHHHHhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhcccccccccccccc--cchhHHHHHHHh
Confidence 3567999999999988888888777777665555555 6899999999999999997332111 012223344444
Q ss_pred hcCCCCCCCCHHHHHHHhccc---CCCeEEEEecCCCcchhcchHHHHHHHHhCC--CEEEEEecCCCc-cccCCHHHHH
Q 022400 190 LVPRPWVIDDLETFKVKWSKK---AWKKAVIFVDNSGADIILGILPFARELLRRG--TQVILAANDLPS-INDVTYPELI 263 (298)
Q Consensus 190 ~~~~~~~~dd~~~~~~~L~~~---~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g--~~V~lavk~~Pi-lNDaT~~Da~ 263 (298)
.++..++||++.+.+.|.+. ++++|-+++||||.|.+-|++ |++.|++.| .+|++.+|.-|. +.|||..|..
T Consensus 214 -~~~~iLvnd~~~vW~~L~~~k~s~~~rVDfVlDNaGfEL~~DLi-lAeyli~~glA~kV~fH~KaiPWFVSDvt~~Df~ 291 (434)
T KOG3870|consen 214 -LDEFILVNDTEDVWSKLSNAKHSRNGRVDFVLDNAGFELFTDLI-LAEYLISSGLATKVRFHVKAIPWFVSDVTEKDFD 291 (434)
T ss_pred -hccceeecChHHHHHHhhcchhcCCceEEEEEeCCccchhHHHH-HHHHHHhccccceEEEcccCCceeeecccccchH
Confidence 35568999999999999764 567899999999999999998 999999998 699999999999 8999999997
Q ss_pred HHHHHHhh
Q 022400 264 EIMSKVTE 271 (298)
Q Consensus 264 ~~l~~~a~ 271 (298)
-.++.+..
T Consensus 292 wll~~L~~ 299 (434)
T KOG3870|consen 292 WLLEFLRD 299 (434)
T ss_pred HHHHHHhc
Confidence 77776654
No 6
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=79.28 E-value=25 Score=32.28 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=56.7
Q ss_pred HHHHHHHHHHH-HhhhhhhchhhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhc
Q 022400 150 KRVESLIRGIF-AGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIIL 228 (298)
Q Consensus 150 d~l~~a~r~al-aGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVf 228 (298)
+.+..+++... +.+++=+|......+ -..|...+.++-..-...+|...+...+..-..+.++++...+|+ .-
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~G~s~~~----A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~-~~- 189 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGIGASGLV----AQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGE-RR- 189 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhHHH----HHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCC-CH-
Confidence 56777776655 555556776442111 123444444432222334566555555443335679999999998 33
Q ss_pred chHHHHHHHHhCCCEEEEEecC
Q 022400 229 GILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 229 D~lpli~~L~~~g~~V~lavk~ 250 (298)
+.+-.++..+++|.+|+.....
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcCC
Confidence 2233678888999999988874
No 7
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=76.05 E-value=66 Score=30.01 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=77.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhh-hhhhchhhhhhhhccCcccHHHHHhhhcCCCC
Q 022400 117 RDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGN-IFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW 195 (298)
Q Consensus 117 ~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN-~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
.|+...+.++........+....+.+ ..+.|..++....... ++=+|.....-+ -.++..-+.++-.+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~t~~~l-----~~~~l~~av~~L~~A~rI~~~G~g~S~~v----A~~~~~~l~~ig~~~~ 160 (281)
T COG1737 90 DDGPESILEKLLAANIAALERTLNLL-----DEEALERAVELLAKARRIYFFGLGSSGLV----ASDLAYKLMRIGLNVV 160 (281)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCeEEEEEechhHHH----HHHHHHHHHHcCCcee
Confidence 34444444555555555555555554 3467888888888666 445564332111 2355666666655667
Q ss_pred CCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 196 VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 196 ~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
.+.|.......+..-..+.+++....+|+ -- ..+-.++..+++|.+|+.....
T Consensus 161 ~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~-t~-e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 161 ALSDTHGQLMQLALLTPGDVVIAISFSGY-TR-EIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred EecchHHHHHHHHhCCCCCEEEEEeCCCC-cH-HHHHHHHHHHHCCCcEEEEcCC
Confidence 77777766644443346789999999998 43 5555788888999999887765
No 8
>PRK15482 transcriptional regulator MurR; Provisional
Probab=60.32 E-value=1.3e+02 Score=27.74 Aligned_cols=122 Identities=19% Similarity=0.071 Sum_probs=63.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHH-HhhhhhhchhhhhhhhccCcccHHHHHhhhcCCCCC
Q 022400 118 DIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIF-AGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWV 196 (298)
Q Consensus 118 DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~al-aGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (298)
|....+.+..+......+......++ .+.+..+++... +.+++=+|.....-+ ...+..-+.++-..-..
T Consensus 96 ~~~~~i~~~~~~~~~~~i~~t~~~id-----~~~l~~~~~~i~~A~~I~i~G~G~S~~~----A~~l~~~l~~~g~~~~~ 166 (285)
T PRK15482 96 DSLEVIARKLNREKELALEQTCALFD-----YARLQKIIEVISKAPFIQITGLGGSALV----GRDLSFKLMKIGYRVAC 166 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhCCeeEEEEeChhHHH----HHHHHHHHHhCCCeeEE
Confidence 44444433333333333444444442 356777777766 445556676442111 12333333332111122
Q ss_pred CCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 197 ~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
..|.............+.++++...+|+ -- +.+-.++..+++|.+|+.....
T Consensus 167 ~~d~~~~~~~~~~~~~~Dv~i~iS~sg~-t~-~~~~~~~~a~~~g~~iI~IT~~ 218 (285)
T PRK15482 167 EADTHVQATVSQALKKGDVQIAISYSGS-KK-EIVLCAEAARKQGATVIAITSL 218 (285)
T ss_pred eccHhHHHHHHhcCCCCCEEEEEeCCCC-CH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 2344433322222224679999999998 43 4444778888889999888764
No 9
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=50.51 E-value=20 Score=28.80 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 216 VIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 216 lyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
++.+==+|. .|+=.+++.++|+++||+|++++...
T Consensus 2 li~~~Gt~G-hv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 2 LIATGGTRG-HVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEEEESSHH-HHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred EEEEcCChh-HHHHHHHHHHHHhccCCeEEEeeccc
Confidence 333444555 44556679999999999999887643
No 10
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=49.18 E-value=1.5e+02 Score=27.78 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHHH--hhhhhhchhhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcc
Q 022400 132 ISLFGDVVRLNDVIEDEGKRVESLIRGIFA--GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSK 209 (298)
Q Consensus 132 l~~~~~l~~~ld~~~~~~d~l~~a~r~ala--GN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~ 209 (298)
+..+....+.++.+. +.+..++....- ++++=+|......+ -..+..-+.++-.....+++...+...+..
T Consensus 14 ~~~~~~~~~~~~~l~---~~~~~~~~~l~~~~~~I~i~G~G~S~~~----A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 86 (321)
T PRK11543 14 MLELQEASRLPERLG---DDFVRAANIILHCEGKVVVSGIGKSGHI----GKKIAATLASTGTPAFFVHPAEALHGDLGM 86 (321)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHHHHHhcCCcEEEEecChhHHH----HHHHHHHHHcCCCceeecChHHHhhCCcCc
Confidence 333444445554332 235555555543 35667776442111 123444455433333455555444433333
Q ss_pred cCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 210 KAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 210 ~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
...+.++++..++|+ -- +.+-.++..+++|.+|+.....
T Consensus 87 ~~~~d~~i~iS~sG~-t~-~~~~~~~~ak~~g~~vI~iT~~ 125 (321)
T PRK11543 87 IESRDVMLFISYSGG-AK-ELDLIIPRLEDKSIALLAMTGK 125 (321)
T ss_pred cCCCCEEEEEeCCCC-cH-HHHHHHHHHHHcCCeEEEEECC
Confidence 235679999999999 43 3444788888999999888763
No 11
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=48.34 E-value=8.8 Score=37.97 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHH-HHHHHcCCccchH--HHHHHHHHHHHHHHHHHHH--Hhhhhh-hchHHHHHHHH--HHHHhhhhhhchhh-h
Q 022400 102 LLCRLRE-QVLRELGFRDIFK--KVKDEENAKAISLFGDVVR--LNDVIE-DEGKRVESLIR--GIFAGNIFDLGSAQ-L 172 (298)
Q Consensus 102 ~~~~~~~-~~~~~~g~~DPY~--~~K~~~N~~Al~~~~~l~~--~ld~~~-~~~d~l~~a~r--~alaGN~iD~G~~~-~ 172 (298)
+..+..+ ++.+.||-+|--- ++=---..+++.++.-++- .+-++- ..-|.|.+++- .--.|+..|||+.. .
T Consensus 54 ~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~ 133 (403)
T PF06838_consen 54 IGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYRE 133 (403)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE
T ss_pred ccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEE
Confidence 3334333 5567888887432 1111223344444444431 111111 11345666552 22468999999853 2
Q ss_pred hhhhccCcccHHHHHhhhc----------------CCCCCCCCHHHHHHHhcccCCCeEEEEecCC
Q 022400 173 AEVFSKDGMSFLASCQNLV----------------PRPWVIDDLETFKVKWSKKAWKKAVIFVDNS 222 (298)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNa 222 (298)
+++.+.+.+|++...+.+. .+.|.+++..++.+.+++. ...+++|+|||
T Consensus 134 v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~-~p~~iifVDNC 198 (403)
T PF06838_consen 134 VPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEI-NPDVIIFVDNC 198 (403)
T ss_dssp --B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH--TTSEEEEE-T
T ss_pred EeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhh-CCCeEEEEeCC
Confidence 3333334667665444332 1246777777777777642 34689999999
No 12
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=41.20 E-value=1.9e+02 Score=26.90 Aligned_cols=145 Identities=13% Similarity=0.119 Sum_probs=77.6
Q ss_pred HHHHHHhhhhhhchHHHHHHHHHHHHh-hhhhhchhhhhhhhccCc-ccHHHHHh---hhcCCCCCCCC--HHHHHHHhc
Q 022400 136 GDVVRLNDVIEDEGKRVESLIRGIFAG-NIFDLGSAQLAEVFSKDG-MSFLASCQ---NLVPRPWVIDD--LETFKVKWS 208 (298)
Q Consensus 136 ~~l~~~ld~~~~~~d~l~~a~r~alaG-N~iD~G~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~dd--~~~~~~~L~ 208 (298)
+.+++.+.+ .+.+.-+..|.+..-.| .+||.|.... .. ++ ..+...++ +....|+.+|. .+.+...|+
T Consensus 13 ~~~~~~~~~-~d~~~i~~~A~~~~~~GAdiIDVg~~~~-~~---eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~ 87 (261)
T PRK07535 13 KSIAEAIEA-KDAAFIQKLALKQAEAGADYLDVNAGTA-VE---EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLK 87 (261)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHCCCCEEEECCCCC-ch---hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHH
Confidence 445555533 12223466666666666 6779997531 11 11 12333333 33456888875 455666665
Q ss_pred ccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe---cCCCccccCCHHHHHHHHHHHhhhhhhhhhccccccc
Q 022400 209 KKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA---NDLPSINDVTYPELIEIMSKVTENMKIKSKSYNYFFF 285 (298)
Q Consensus 209 ~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav---k~~PilNDaT~~Da~~~l~~~a~v~~il~~~~~~~~~ 285 (298)
. ++..-++-|=+|+.--++. .++.++++|..|++.. +|.| -|+++..+.+.+... .....+....-+
T Consensus 88 ~--~~G~~iINsIs~~~~~~~~--~~~l~~~~g~~vv~m~~~~~g~P----~t~~~~~~~l~~~v~--~a~~~GI~~~~I 157 (261)
T PRK07535 88 V--AKGPPLINSVSAEGEKLEV--VLPLVKKYNAPVVALTMDDTGIP----KDAEDRLAVAKELVE--KADEYGIPPEDI 157 (261)
T ss_pred h--CCCCCEEEeCCCCCccCHH--HHHHHHHhCCCEEEEecCCCCCC----CCHHHHHHHHHHHHH--HHHHcCCCHhHE
Confidence 4 2234578888887222343 4666778898888765 4545 256555443333211 123444444445
Q ss_pred ccCCCccccc
Q 022400 286 LDDYNVVPIS 295 (298)
Q Consensus 286 ~~~~~~~~~~ 295 (298)
+=|+-+-|++
T Consensus 158 ilDPgi~~~~ 167 (261)
T PRK07535 158 YIDPLVLPLS 167 (261)
T ss_pred EEeCCCCccc
Confidence 6666666654
No 13
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=39.62 E-value=72 Score=30.89 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCcccc
Q 022400 197 IDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSIND 256 (298)
Q Consensus 197 ~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilND 256 (298)
.+|...+.+.+.. .+++++++. |. .+.= ++..|.++|.+|+++-++..++..
T Consensus 131 ~~da~~l~~~~~~--~~~vvViGg--G~---ig~E-~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 131 AGDAARLREVLQP--ERSVVIVGA--GT---IGLE-LAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred HHHHHHHHHHhhc--CCeEEEECC--CH---HHHH-HHHHHHHcCCeEEEEecCCcchhh
Confidence 3456667776655 688999973 54 3554 788899999999999988776653
No 14
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=3.3e+02 Score=28.89 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhchhhhhhhhccCcccHHHHHhhhcCCC
Q 022400 115 GFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRP 194 (298)
Q Consensus 115 g~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (298)
--+.-++.+|+..-++.+..+..+.+.= .+.+.+. ..--|.++=.|+.. ++...+.+.+++.-.
T Consensus 337 Q~n~~l~~Irk~l~kkvl~~L~~La~~~------~e~y~~f--~~~fg~~LKeG~~e--------D~~n~e~l~~lLrf~ 400 (623)
T COG0326 337 QQNRILAAIRKALTKKVLSMLEKLAKDD------PEKYRKF--WKQFGLVLKEGLYE--------DFENKEKLLDLLRFR 400 (623)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhcC------HHHHHHH--HHHHHHHHHhhhhh--------hhhhHHHHHhhhEec
Confidence 4456678888888877777776665431 1222221 12234444444432 223334444433211
Q ss_pred CCC---C---CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 022400 195 WVI---D---DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (298)
Q Consensus 195 ~~~---d---d~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~la 247 (298)
-.- + .+++..++++. +.+.|.|++.++=. .+-.. |.++..+..|.+|.+.
T Consensus 401 St~~~~~~~~sl~eYv~rmke-~q~~IyY~tges~~-~~~~s-P~lE~~k~kgieVL~l 456 (623)
T COG0326 401 STSDSGEKTVSLEEYVSRMKE-GQKQIYYITGESYQ-AAKGS-PHLELFKAKGIEVLLL 456 (623)
T ss_pred ccCCCccCcccHHHHHHhccc-ccceeEEeccccHH-HHhcC-chHHHHHhcCcEEEec
Confidence 101 1 34445555543 36789999988886 77676 7888888777777653
No 15
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=38.20 E-value=3.6e+02 Score=29.04 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=64.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhchhhhhhhhccCcccHHHHHhhhcCCCC--
Q 022400 118 DIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPW-- 195 (298)
Q Consensus 118 DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (298)
.-.+.+|+.-.+..++.+..+.+. ++.+.. -..--|..+=.|+.. ++...+.+.+++--.-
T Consensus 379 ~~l~~i~~~i~~ki~~~l~~la~~-------~~~y~~--f~~~~g~~lK~G~~~--------D~~~~~~l~~Llrf~ss~ 441 (701)
T PTZ00272 379 KILKVIRKNIVKKCLEMFDEVAEN-------KEDYKQ--FYEQFGKNIKLGIHE--------DTANRKKLMELLRFYSTE 441 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-------HHHHHH--HHHHHhhhhheeecc--------CHhHHHHHHHhhceeecC
Confidence 345666666666666666555321 122221 223456666666532 2233444444432110
Q ss_pred ---CCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 022400 196 ---VIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (298)
Q Consensus 196 ---~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~la 247 (298)
..-.+++..++++. +.+.|.|++.++=+ .+--- |+++.++++|.+|+|+
T Consensus 442 ~~~~~~sL~eYv~rmk~-~Q~~IYY~~~~s~~-~~~~s-P~lE~~~~kg~EVL~l 493 (701)
T PTZ00272 442 SGEEMTTLKDYVTRMKA-GQKSIYYITGDSKK-KLETS-PFIEQARRRGLEVLFM 493 (701)
T ss_pred CCCceeeHHHHHHhhcc-CCceEEEEeCCCHH-HHHhC-hHHHHHHhCCCeEEEe
Confidence 11256777777764 36789999987776 66666 8999999999999987
No 16
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=37.45 E-value=3.3e+02 Score=25.04 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhh-hhhhchhhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhc
Q 022400 150 KRVESLIRGIFAGN-IFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIIL 228 (298)
Q Consensus 150 d~l~~a~r~alaGN-~iD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVf 228 (298)
+.+..++....-.+ ++=||......+ ...|..-+.++-..-...+|...+.........+.++++...+|+ --
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~----A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~-t~- 201 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGAGGSAAI----ARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGR-TS- 201 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHH----HHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCC-CH-
Confidence 56777777666444 445565432111 112333333321111234455444332222225679999999997 32
Q ss_pred chHHHHHHHHhCCCEEEEEecC
Q 022400 229 GILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 229 D~lpli~~L~~~g~~V~lavk~ 250 (298)
+.+-.++..+++|.+|+.....
T Consensus 202 ~~~~~~~~ak~~g~~ii~IT~~ 223 (292)
T PRK11337 202 DVIEAVELAKKNGAKIICITNS 223 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCC
Confidence 3444677888889998888753
No 17
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.25 E-value=37 Score=32.73 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHhcc---cCCCeEEEEecCCCcchhcchHHHHHHHHhC----CCEEEEE
Q 022400 194 PWVIDDLETFKVKWSK---KAWKKAVIFVDNSGADIILGILPFARELLRR----GTQVILA 247 (298)
Q Consensus 194 ~~~~dd~~~~~~~L~~---~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~----g~~V~la 247 (298)
.|.+|.+..|.+.+.+ ..++++|+.+||-|+ -=.-.-.+..+|++. |..|.++
T Consensus 161 ~Fav~~i~~WW~~~g~~~yp~a~~lli~~D~Ggs-N~~r~r~wk~~L~~la~~~gl~I~v~ 220 (311)
T PF07592_consen 161 DFAVDSIRRWWEEMGKARYPHAKRLLITADNGGS-NGSRRRLWKKRLQELADETGLSIRVC 220 (311)
T ss_pred HHHHHHHHHHHHHhChhhcCchheEEEeccCCCC-ccchhHHHHHHHHHHHHHhCCEEEEE
Confidence 3677778888888743 237899999999999 555544377777654 8887765
No 18
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=37.12 E-value=79 Score=28.59 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.0
Q ss_pred CCeEEEEe---cCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFV---DNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~---DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+++++++| +|-|- +.+ .+|+|...|..|++..-+.|
T Consensus 49 ~~~v~vlcG~GnNGGD----G~V-aAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGD----GLV-AARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHH----HHH-HHHHHHhCCCceEEEEeCCC
Confidence 56899998 66664 454 99999999988777765544
No 19
>PLN00016 RNA-binding protein; Provisional
Probab=36.66 E-value=56 Score=31.38 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=32.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.++||++.=|+|.-=.++.- +++.|++.|++|+.++|+..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~-lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFY-LAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cceEEEEeccCCCceeEhHH-HHHHHHHCCCEEEEEecCCc
Confidence 46788886666654568996 99999999999999999854
No 20
>PRK02947 hypothetical protein; Provisional
Probab=36.44 E-value=2e+02 Score=26.26 Aligned_cols=39 Identities=28% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 211 AWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 211 ~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
..+.++++..++|+ -- +.+-+++.++++|.+|+......
T Consensus 105 ~~~Dv~i~iS~sG~-t~-~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 105 RPGDVLIVVSNSGR-NP-VPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCCEEEEEeCCCC-CH-HHHHHHHHHHHCCCEEEEEcCCc
Confidence 35789999999998 43 45557888999999999887753
No 21
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=34.59 E-value=2.5e+02 Score=29.03 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=28.4
Q ss_pred HHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 200 LETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 200 ~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
++...+++.. +.+.|.|++..+-+ .+--- |+++.++++|.+|+|+.
T Consensus 276 L~eYv~rmke-~Qk~IYY~~g~s~~-~~~~S-P~lE~~k~kG~EVL~l~ 321 (531)
T PF00183_consen 276 LDEYVERMKE-GQKQIYYLTGESRE-EAEQS-PYLEAFKKKGYEVLFLT 321 (531)
T ss_dssp HHHHHHTS-T-T-SEEEEEESSSHH-HHHTS-GGGHHHHHCT--EEEE-
T ss_pred HHHhhhcccc-ccccceEEecchHH-HHhhc-cchhhHHhhCceEEEeC
Confidence 3344444433 36789999976665 55566 78888888888888763
No 22
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.42 E-value=67 Score=28.06 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=26.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++.+-+ |. ++.- +++.|+++|++|+++.|+.
T Consensus 6 ~~vlItGas-g~---iG~~-l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 6 KVAIVTGAS-SG---IGEG-IARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cEEEEECCC-Ch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 566666554 44 5897 9999999999999999875
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=34.40 E-value=61 Score=30.91 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=28.5
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
+|++++=.+-. .+.=+++++++|+++||+|+++.-.
T Consensus 2 rIl~~~~p~~G-Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIGSRG-DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 46666655555 6677778999999999999999765
No 24
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=34.21 E-value=73 Score=31.42 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCcc
Q 022400 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 254 (298)
Q Consensus 198 dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pil 254 (298)
++...+.+.+.+...+++++++ +|. + +.= ++..|.+.|.+|+++.++..++
T Consensus 134 ~~~~~l~~~l~~~~~~~vvViG--gG~-i--g~E-~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 134 EDTDAIDQFIKANQVDKALVVG--AGY-I--SLE-VLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred HHHHHHHHHHhhcCCCEEEEEC--CCH-H--HHH-HHHHHHhCCCcEEEEecccccc
Confidence 3455556655443358999998 565 3 554 7788999999999999987655
No 25
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=34.07 E-value=58 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.5
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 253 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pi 253 (298)
+|||+++-... |.. .+++.|.+.|.+|+++.-+...
T Consensus 1 KIl~i~~~~~~---~~~-~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTPST---FIY-NLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCcHH---HHH-HHHHHHHHCCCEEEEEEcCCCc
Confidence 47888877754 344 5899999999999998876554
No 26
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=33.83 E-value=41 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCccchHHHHHHHH
Q 022400 102 LLCRLREQVLRELGFRDIFKKVKDEEN 128 (298)
Q Consensus 102 ~~~~~~~~~~~~~g~~DPY~~~K~~~N 128 (298)
++.+-.+.+++..|++|||...|+.--
T Consensus 54 VlaEpIQTvmRr~g~~~pYE~LK~lTR 80 (115)
T PF08328_consen 54 VLAEPIQTVMRRYGIPNPYEKLKELTR 80 (115)
T ss_dssp GGHHHHHHHHHHTT-SSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHc
Confidence 566667788999999999999998653
No 27
>PRK06138 short chain dehydrogenase; Provisional
Probab=33.79 E-value=88 Score=27.37 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=27.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
|++++.+-+ |. ++.. +++.|.+.|++|++..|..+
T Consensus 6 k~~lItG~s-g~---iG~~-la~~l~~~G~~v~~~~r~~~ 40 (252)
T PRK06138 6 RVAIVTGAG-SG---IGRA-TAKLFAREGARVVVADRDAE 40 (252)
T ss_pred cEEEEeCCC-ch---HHHH-HHHHHHHCCCeEEEecCCHH
Confidence 566666665 44 5897 99999999999999988643
No 28
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=33.71 E-value=1.6e+02 Score=28.71 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHhcccCCCeEEEEecCCCcch-hcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHH
Q 022400 196 VIDDLETFKVKWSKKAWKKAVIFVDNSGADI-ILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS 267 (298)
Q Consensus 196 ~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdi-VfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~ 267 (298)
..+-+.++-+.+++-+.|++++++|..=... .+|. +.+.|.+.|.++++.-.-.| +.|.+++.++.+
T Consensus 15 G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~--v~~~L~~~~i~~~~f~~v~~---np~~~~v~~~~~ 82 (383)
T PRK09860 15 GADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGD--VQKALEERNIFSVIYDGTQP---NPTTENVAAGLK 82 (383)
T ss_pred CcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHH--HHHHHHHcCCeEEEeCCCCC---CcCHHHHHHHHH
Confidence 3444555555555434689999999621101 2565 57777777877654422222 566776666544
No 29
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.59 E-value=1.2e+02 Score=26.23 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=39.8
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHHHHhhhhhhhhhccccccccc
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKVTENMKIKSKSYNYFFFLD 287 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~~~a~v~~il~~~~~~~~~~~ 287 (298)
.+++++++ +|| + .+.. +++.|.++|.+|+++-|. .+++...+.+ .+++-++...+.++.
T Consensus 44 gk~vlViG--~G~-~-~G~~-~a~~L~~~g~~V~v~~r~--------~~~l~~~l~~----aDiVIsat~~~~ii~ 102 (168)
T cd01080 44 GKKVVVVG--RSN-I-VGKP-LAALLLNRNATVTVCHSK--------TKNLKEHTKQ----ADIVIVAVGKPGLVK 102 (168)
T ss_pred CCEEEEEC--CcH-H-HHHH-HHHHHhhCCCEEEEEECC--------chhHHHHHhh----CCEEEEcCCCCceec
Confidence 58899986 487 3 4774 999999999999988875 3455444443 455555555544443
No 30
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=32.87 E-value=1.1e+02 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=35.5
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCcccc
Q 022400 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSIND 256 (298)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilND 256 (298)
++..+.+.+.. .+++++++ +|. .+.- ++..|.+.|.+|+++.++..++..
T Consensus 130 ~~~~~~~~~~~--~~~vvViG--gG~---~g~e-~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 130 EYRAAETQLRD--AQRVLVVG--GGL---IGTE-LAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred HHHHHHHHhhc--CCeEEEEC--CCH---HHHH-HHHHHHhcCCeEEEEecCCcccch
Confidence 44445555544 68899998 454 3554 778888999999999988766543
No 31
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=32.69 E-value=46 Score=32.98 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=25.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
|||+++ |.|+ + .+ ++++.++++|++|+.+-
T Consensus 3 kkili~--g~g~-~--~~-~~~~aa~~lG~~vv~~~ 32 (449)
T TIGR00514 3 DKILIA--NRGE-I--AL-RILRACKELGIKTVAVH 32 (449)
T ss_pred ceEEEe--CCCH-H--HH-HHHHHHHHcCCeEEEEE
Confidence 688888 9999 4 66 69999999999988874
No 32
>PRK07890 short chain dehydrogenase; Provisional
Probab=32.59 E-value=1.2e+02 Score=26.58 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=26.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++ +--+|. ++.- +++.|.++|.+|+++.|+.
T Consensus 6 k~vlI-tGa~~~---IG~~-la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 6 KVVVV-SGVGPG---LGRT-LAVRAARAGADVVLAARTA 39 (258)
T ss_pred CEEEE-ECCCCc---HHHH-HHHHHHHcCCEEEEEeCCH
Confidence 55554 445555 6997 9999999999999998754
No 33
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.57 E-value=88 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk 249 (298)
.+.++++...+|+ -- +.+-.++.++++|.+|+....
T Consensus 72 ~~Dv~I~iS~sG~-t~-~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 72 KGDLLIAISGSGE-TE-SLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred CCCEEEEEeCCCC-cH-HHHHHHHHHHHCCCeEEEEEC
Confidence 4679999999998 43 333367788889999888775
No 34
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=32.23 E-value=68 Score=26.80 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred cchHHHHHHHHhCCCEEEEEecCCC
Q 022400 228 LGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 228 fD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.+.. ++++|++.|++|+..+|+..
T Consensus 10 vG~~-l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 10 VGRA-LAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHH-HHHHHHHTTSEEEEEESSGG
T ss_pred HHHH-HHHHHHHCCCEEEEEecCch
Confidence 5886 99999999999999999976
No 35
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=32.04 E-value=46 Score=32.44 Aligned_cols=167 Identities=19% Similarity=0.154 Sum_probs=83.4
Q ss_pred cHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHhccC--CCCC----CCCChhHhHHHHHH-HHHHHHcCCccchHH
Q 022400 52 SIPSFKKRAESDP--TVPDAHVRAEKFAQRYSEILEDMKK--DPET----HGGPPDCILLCRLR-EQVLRELGFRDIFKK 122 (298)
Q Consensus 52 Ci~C~~~qa~~~~--~~~~~~~~~~~~~~~~~~~L~~l~~--~p~~----~~~~~~~r~~~~~~-~~~~~~~g~~DPY~~ 122 (298)
-+..+++||+... ....-++.++.=..++++..++.+- +.+. ||.-- +..+.. +.+.+.+|-++-.-.
T Consensus 10 ~~~k~~~~ae~~l~~~f~~ide~~~~Nq~kVL~AF~~~rvs~~hf~~stGYGydD---~GRdtLe~vyA~vf~aE~a~VR 86 (416)
T COG4100 10 TILKLLRQAEQDLAPIFKEIDEIAEYNQKKVLEAFRHHRVSESHFTGSTGYGYDD---LGRDTLERVYAQVFGAEAALVR 86 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCCCCCccc---cchhHHHHHHHHHhccccceee
Confidence 3556777887644 2233344445445566666665442 1111 23211 222222 234455665554432
Q ss_pred HHHHH--HHHHHHHHHHHHH--H-hhhhhhchHHHHHHH--HHHHHhhhhhhchhhh-hhhhccCcccHHHHHhhhcC--
Q 022400 123 VKDEE--NAKAISLFGDVVR--L-NDVIEDEGKRVESLI--RGIFAGNIFDLGSAQL-AEVFSKDGMSFLASCQNLVP-- 192 (298)
Q Consensus 123 ~K~~~--N~~Al~~~~~l~~--~-ld~~~~~~d~l~~a~--r~alaGN~iD~G~~~~-~~~~~~~~~~~~~~~~~~~~-- 192 (298)
..--+ ..++..++.-++- + +......-|.|.+.+ |+--.|...|||.... +++-..+..|++.....+..
T Consensus 87 pq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~t 166 (416)
T COG4100 87 PQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISDRT 166 (416)
T ss_pred eeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCccc
Confidence 22112 2334444433331 1 111111235566643 4555788899997642 22222335666554443321
Q ss_pred -------------C-CCCCCCHHHHHHHhcccCCCeEEEEecCC
Q 022400 193 -------------R-PWVIDDLETFKVKWSKKAWKKAVIFVDNS 222 (298)
Q Consensus 193 -------------~-~~~~dd~~~~~~~L~~~~~k~ilyl~DNa 222 (298)
| .+.+++.+++.+.+++. .-+++.|+|||
T Consensus 167 kli~IQRS~GY~~RpS~~I~eI~~~i~~vk~i-npn~ivFVDNC 209 (416)
T COG4100 167 KLIGIQRSKGYAWRPSLSIAEIEEMITFVKEI-NPNVIVFVDNC 209 (416)
T ss_pred eEEEEEeccCcCCCCcccHHHHHHHHHHHHhc-CCCEEEEEecc
Confidence 2 36677788888887753 45799999999
No 36
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.68 E-value=2.3e+02 Score=22.04 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 195 WVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 195 ~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
..+++.+...........+.++++...+|+ -- +.+-+++.++++|.+|++....
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~-~~-~~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 43 VLLSDPHLQLMSAANLTPGDVVIAISFSGE-TK-ETVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred EEecCHHHHHHHHHcCCCCCEEEEEeCCCC-CH-HHHHHHHHHHHcCCeEEEEcCC
Confidence 445555555544433235679999999998 32 3334678888889998877664
No 37
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.33 E-value=1.5e+02 Score=21.64 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=25.8
Q ss_pred chHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHH
Q 022400 229 GILPFARELLRRGTQVILAANDLPSINDVTYPELIE 264 (298)
Q Consensus 229 D~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~ 264 (298)
+.= ++..|.++|.+|+++.++..++ ...-+++..
T Consensus 11 g~E-~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~ 44 (80)
T PF00070_consen 11 GIE-LAEALAELGKEVTLIERSDRLL-PGFDPDAAK 44 (80)
T ss_dssp HHH-HHHHHHHTTSEEEEEESSSSSS-TTSSHHHHH
T ss_pred HHH-HHHHHHHhCcEEEEEeccchhh-hhcCHHHHH
Confidence 443 7888999999999999999888 444455544
No 38
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.18 E-value=69 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++|+.+- +|. ++.. +++.|.++|++|++..|..
T Consensus 6 ~~ilItGa-sg~---iG~~-l~~~l~~~g~~v~~~~r~~ 39 (246)
T PRK05653 6 KTALVTGA-SRG---IGRA-IALRLAADGAKVVIYDSNE 39 (246)
T ss_pred CEEEEECC-CcH---HHHH-HHHHHHHCCCEEEEEeCCh
Confidence 57777666 455 5896 9999999999999999874
No 39
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.13 E-value=1.4e+02 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.9
Q ss_pred CeEEEEe--cCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 213 KKAVIFV--DNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 213 k~ilyl~--DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
++|++|| -|-|. |-+.++|+|..+|.+|.++.
T Consensus 61 ~~V~VlcG~GNNGG----DGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGG----DGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCch----hHHHHHHHHHHCCCeEEEEE
Confidence 6788887 66776 44459999999999999888
No 40
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=31.06 E-value=3e+02 Score=27.34 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=43.4
Q ss_pred HHhhhcCCCC--CCCCHHHHHHHhcccCCCeEEEEe-cCCCcchhcchHH---HHHHHHhCCCEEEEEecCCCc-cccCC
Q 022400 186 SCQNLVPRPW--VIDDLETFKVKWSKKAWKKAVIFV-DNSGADIILGILP---FARELLRRGTQVILAANDLPS-INDVT 258 (298)
Q Consensus 186 ~~~~~~~~~~--~~dd~~~~~~~L~~~~~k~ilyl~-DNaGEdiVfD~lp---li~~L~~~g~~V~lavk~~Pi-lNDaT 258 (298)
.++.+..|++ .+.|.+++.+.+.+ .+..+|.+ |-+|..+-++-+. .++.|++.|+++++.+=+.-+ ++|.+
T Consensus 6 ~l~~l~~Rg~~~~~~~~~~l~~~l~~--~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDps 83 (408)
T PRK05912 6 LLEELKERGLIEQITDEEELEEKLAK--EPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDPS 83 (408)
T ss_pred HHHHHHhCCCeeecCCHHHHHHHhhC--CCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCCC
Confidence 3344333543 35567888888864 34456666 9999546666542 344556679988777755444 66653
No 41
>PRK12829 short chain dehydrogenase; Provisional
Probab=30.93 E-value=1e+02 Score=27.11 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+++++.+-. |. ++.. +++.|++.|++|+++.|..
T Consensus 11 ~~~vlItGa~-g~---iG~~-~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 11 GLRVLVTGGA-SG---IGRA-IAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred CCEEEEeCCC-Cc---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 4677766654 55 5887 9999999999999999864
No 42
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=30.93 E-value=65 Score=28.56 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=27.4
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS 253 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pi 253 (298)
+|++++.+.|....+=. .+++.|.+.|++|+++......
T Consensus 1 kIl~i~~~~~g~~~~~~-~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRL-PLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHH-HHHHHHHhcCCeeEEEecCCCc
Confidence 47888877554244444 5889998899999988766543
No 43
>PRK08628 short chain dehydrogenase; Provisional
Probab=30.22 E-value=1.3e+02 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=27.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+++|+.+-+ |. ++.- +++.|.+.|.+|+++.|..+
T Consensus 8 ~~ilItGas-gg---iG~~-la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 8 KVVIVTGGA-SG---IGAA-ISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CEEEEeCCC-Ch---HHHH-HHHHHHHcCCcEEEEcCChh
Confidence 566666654 44 5897 99999999999999988765
No 44
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.04 E-value=1.4e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=27.9
Q ss_pred CCeEEEEecCC-CcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 212 WKKAVIFVDNS-GADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 212 ~k~ilyl~DNa-GEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
.|++++.+-+. |. ++.. +++.|.+.|.+|+++.|+
T Consensus 5 ~k~vlItGas~~~g---iG~~-la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 5 KKIALVTGASRLNG---IGAA-VCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CcEEEEeCCCCCCC---HHHH-HHHHHHHcCCcEEEEcCC
Confidence 36777777653 45 6887 999999999999998876
No 45
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=29.48 E-value=1.4e+02 Score=26.13 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=36.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC---------CccccCCHHHHHH-HHHHHh
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL---------PSINDVTYPELIE-IMSKVT 270 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~---------PilNDaT~~Da~~-~l~~~a 270 (298)
|++ +++-.+|. ++.- +++.|.+.|.+|+++.|.. .+.=|+|-.+... .++++.
T Consensus 9 k~v-lItGas~~---iG~~-la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 9 KTV-WVTGAAQG---IGYA-VALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CEE-EEeCCCch---HHHH-HHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 444 45666665 5886 9999999999999998865 1223777666555 555543
No 46
>PRK06398 aldose dehydrogenase; Validated
Probab=28.97 E-value=1.7e+02 Score=26.19 Aligned_cols=52 Identities=27% Similarity=0.277 Sum_probs=37.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc-------cccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS-------INDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pi-------lNDaT~~Da~~-~l~~~ 269 (298)
|++|+.+=+.| ++.- +++.|.+.|.+|++..|..+- .-|+|-.+... .++++
T Consensus 7 k~vlItGas~g----IG~~-ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 66 (258)
T PRK06398 7 KVAIVTGGSQG----IGKA-VVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYV 66 (258)
T ss_pred CEEEEECCCch----HHHH-HHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHH
Confidence 66776665444 5997 999999999999999887542 24787766544 55554
No 47
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.84 E-value=1.5e+02 Score=29.58 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhcccCCCeEEEEe-cCCCcchhcchHHHH---HHHHhCCCEEEEEecCCCc-cccCCHHHHHH
Q 022400 197 IDDLETFKVKWSKKAWKKAVIFV-DNSGADIILGILPFA---RELLRRGTQVILAANDLPS-INDVTYPELIE 264 (298)
Q Consensus 197 ~dd~~~~~~~L~~~~~k~ilyl~-DNaGEdiVfD~lpli---~~L~~~g~~V~lavk~~Pi-lNDaT~~Da~~ 264 (298)
+.+-+.+.+.+++ ..--+|++ |-+|.++.++-+..+ +.|+..||+|++.+=+.-. |||.|-.....
T Consensus 18 i~~ee~l~~ll~~--~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r 88 (401)
T COG0162 18 ITDEEELRKLLEE--GPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEER 88 (401)
T ss_pred cCcHHHHHHHHhc--CCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCCCCCCHHHH
Confidence 3355566666654 25577777 999965888865444 4456669999988877776 99997554443
No 48
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=28.74 E-value=1.2e+02 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
...+++++-.+ |.+|+++.|+++|.+|+++.-.
T Consensus 100 ~d~ivLvSgD~------Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 100 IDTIVLVSGDS------DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCEEEEEECCc------cHHHHHHHHHHcCCEEEEEccC
Confidence 46777777655 5669999999999999988765
No 49
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=28.67 E-value=1.7e+02 Score=27.18 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=45.0
Q ss_pred HHHhhhcCCCCCCCCHHHHHHHhcccCCCeEE--EEecCCCcc-hhcchHHHHHHHHhCCCEEEEEec
Q 022400 185 ASCQNLVPRPWVIDDLETFKVKWSKKAWKKAV--IFVDNSGAD-IILGILPFARELLRRGTQVILAAN 249 (298)
Q Consensus 185 ~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~il--yl~DNaGEd-iVfD~lpli~~L~~~g~~V~lavk 249 (298)
+.++++-.-||..+.+.++.++|.+.+++.|. ++-+..+.. -..|.. |.+.|.+.|.+|++++-
T Consensus 51 ~Sl~~~g~~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~~~~~~~D~~-la~al~~~~~~vvl~~~ 117 (310)
T PF05226_consen 51 ESLAELGRWPWPRSVYARLLDRLAAAGAKAIGFDILFDEPDPSNPEGDQA-LAEALRRAGNRVVLASV 117 (310)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCCCCCchHHHH-HHHHHHhCCCeEEEEEe
Confidence 44554445689999999999999765677643 233444420 137997 99999999988888754
No 50
>PRK07326 short chain dehydrogenase; Provisional
Probab=28.45 E-value=96 Score=26.90 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=26.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++.+ .+|. ++.. +++.|+++|.+|++++|..
T Consensus 7 ~~ilItG-atg~---iG~~-la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITG-GSKG---IGFA-IAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CEEEEEC-CCCc---HHHH-HHHHHHHCCCEEEEeeCCH
Confidence 4555554 5776 6997 9999999999999998854
No 51
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=28.30 E-value=64 Score=31.86 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~la 247 (298)
|+||++ |+|+ + .. ++++.++++|++|+.+
T Consensus 3 k~iLi~--g~g~-~--a~-~i~~aa~~~G~~vv~~ 31 (451)
T PRK08591 3 DKILIA--NRGE-I--AL-RIIRACKELGIKTVAV 31 (451)
T ss_pred ceEEEE--CCCH-H--HH-HHHHHHHHcCCeEEEE
Confidence 688888 9998 4 56 6999999999998876
No 52
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.99 E-value=84 Score=29.35 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=29.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
.|++++.+-++| ++.- +++.|.+.|.+|+++.|.
T Consensus 14 gk~~lITGas~G----IG~~-~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 14 GKRAVVTGASDG----LGLG-LARRLAAAGAEVILPVRN 47 (313)
T ss_pred CCEEEEeCCCCh----HHHH-HHHHHHHCCCEEEEEeCC
Confidence 478888888777 4997 999999999999999986
No 53
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.05 E-value=1e+02 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+++++.+=+.| ++.- +++.|++.|++|+++.|..
T Consensus 6 ~k~vlItGasgg----iG~~-l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 6 GKTALVTGSSRG----IGAD-TAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CcEEEEECCCCc----HHHH-HHHHHHHCCCEEEEEeCCc
Confidence 367777765544 5997 9999999999999988854
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.94 E-value=87 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCE-EEEEecC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQ-VILAAND 250 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~-V~lavk~ 250 (298)
.+++++++ +|+ ..+. .+..|..+|.+ |+++-|+
T Consensus 12 ~~~vlviG--aGg---~ar~-v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIG--AGG---AARA-VAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEES--SSH---HHHH-HHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEEC--CHH---HHHH-HHHHHHHcCCCEEEEEECC
Confidence 58999999 798 5886 99999999966 8888875
No 55
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.66 E-value=1.2e+02 Score=26.20 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=34.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc-------cccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS-------INDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pi-------lNDaT~~Da~~-~l~~~ 269 (298)
+++++.+-..| ++.. +++.|.+.|.+|+++.|..+- .=|+|-.+... .++++
T Consensus 4 k~vlItG~s~~----iG~~-ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 63 (234)
T PRK07577 4 RTVLVTGATKG----IGLA-LSLRLANLGHQVIGIARSAIDDFPGELFACDLADIEQTAATLAQI 63 (234)
T ss_pred CEEEEECCCCc----HHHH-HHHHHHHCCCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHHHH
Confidence 56665554444 5887 999999999999999886422 23666555443 44443
No 56
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=25.62 E-value=2e+02 Score=27.96 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=34.5
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCcc
Q 022400 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI 254 (298)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pil 254 (298)
+...+.+.+.....+++++++ +|- .+.- ++..|.+.|.+|+++.++..++
T Consensus 124 ~~~~~~~~l~~~~~~~vvViG--gG~---~g~e-~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 124 DTDAIKQYIDKNKVENVVIIG--GGY---IGIE-MAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred HHHHHHHHHhhcCCCeEEEEC--CCH---HHHH-HHHHHHhCCCcEEEEECCcccC
Confidence 344555555332357899885 343 3554 7788999999999999988774
No 57
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=25.31 E-value=1.8e+02 Score=20.92 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+.|+++| ++|. - -.. ....|++.|.+=++.++|+
T Consensus 56 ~~~iv~~c-~~g~-~--a~~-~~~~l~~~G~~~v~~l~GG 90 (100)
T smart00450 56 DKPVVVYC-RSGN-R--SAK-AAWLLRELGFKNVYLLDGG 90 (100)
T ss_pred CCeEEEEe-CCCc-H--HHH-HHHHHHHcCCCceEEecCC
Confidence 45566665 7776 2 243 7888888998744555665
No 58
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.24 E-value=1.5e+02 Score=23.25 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=27.9
Q ss_pred CCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEE
Q 022400 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQV 244 (298)
Q Consensus 198 dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V 244 (298)
....++.+.|.+. .+++++++.|++. - -.- +++.|.++|..|
T Consensus 17 pga~e~l~~L~~~-g~~~~~lTNns~~-s--~~~-~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 17 PGAVEALDALRER-GKPVVFLTNNSSR-S--REE-YAKKLKKLGIPV 58 (101)
T ss_dssp TTHHHHHHHHHHT-TSEEEEEES-SSS----HHH-HHHHHHHTTTT-
T ss_pred cCHHHHHHHHHHc-CCCEEEEeCCCCC-C--HHH-HHHHHHhcCcCC
Confidence 3455667777652 5889999999987 2 233 778888888764
No 59
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=24.82 E-value=3.9e+02 Score=26.27 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=36.6
Q ss_pred CHHHHHHHhcccCCCeEEEEe-cCCCcchhcchHH---HHHHHHhCCCEEEEEecCCCc-cccCC
Q 022400 199 DLETFKVKWSKKAWKKAVIFV-DNSGADIILGILP---FARELLRRGTQVILAANDLPS-INDVT 258 (298)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~-DNaGEdiVfD~lp---li~~L~~~g~~V~lavk~~Pi-lNDaT 258 (298)
+.+.+.+.+.+ +..+|.+ |-+|..+-++-+. .++.|++.|++|++.+=+.-+ ++|.+
T Consensus 19 ~~~~l~~ll~~---~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~~~~iligd~ta~igdps 80 (377)
T TIGR00234 19 EEEELLKLLER---KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPS 80 (377)
T ss_pred CHHHHHHHhcC---CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccchhhcCCC
Confidence 34555555543 3455665 9999447777542 245666779988877766665 79954
No 60
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.69 E-value=1.7e+02 Score=25.54 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.|++++.+=+.| ++.. +++.|.+.|.+|+++.|..
T Consensus 5 ~k~vlItGas~g----IG~~-ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTG----LGQG-IAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCch----HHHH-HHHHHHHCCCEEEEEcCch
Confidence 367776665444 5996 9999999999999998854
No 61
>PRK05993 short chain dehydrogenase; Provisional
Probab=24.69 E-value=1.4e+02 Score=27.04 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=35.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCc------------cccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS------------INDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pi------------lNDaT~~Da~~-~l~~~ 269 (298)
+++++.+= +|. ++.- +++.|.+.|.+|+++.|...- .=|+|-.+... .++++
T Consensus 5 k~vlItGa-sgg---iG~~-la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~ 69 (277)
T PRK05993 5 RSILITGC-SSG---IGAY-CARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQV 69 (277)
T ss_pred CEEEEeCC-CcH---HHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHH
Confidence 56666665 444 5896 999999999999999986432 23776655444 44444
No 62
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.65 E-value=1.2e+02 Score=29.18 Aligned_cols=35 Identities=40% Similarity=0.454 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+.+++-+=|+|. |.- .+++|.++|.+|++++|..
T Consensus 35 ~~~~vVTGansGI----G~e-ta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 35 GKVALVTGATSGI----GFE-TARELALRGAHVVLACRNE 69 (314)
T ss_pred CcEEEEECCCCch----HHH-HHHHHHhCCCEEEEEeCCH
Confidence 4678888899986 886 9999999999999999986
No 63
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=24.65 E-value=80 Score=31.70 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=24.6
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
||||++ |.|| + .. ++++.++++|.+++.+.
T Consensus 3 ~kvLi~--~~ge-i--a~-~ii~a~~~~Gi~~v~v~ 32 (472)
T PRK07178 3 KKILIA--NRGE-I--AV-RIVRACAEMGIRSVAIY 32 (472)
T ss_pred cEEEEE--CCcH-H--HH-HHHHHHHHcCCeEEEEe
Confidence 688888 9999 5 55 69999999999877653
No 64
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=24.47 E-value=64 Score=32.18 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=68.8
Q ss_pred HcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhhhhchhhhhhhhccCcccHHHHHhhhcC
Q 022400 113 ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVP 192 (298)
Q Consensus 113 ~~g~~DPY~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~a~r~alaGN~iD~G~~~~~~~~~~~~~~~~~~~~~~~~ 192 (298)
-.+.+|||.++=++-+..+-.-+|-.+..+|.+-. -=..+.++|+..-+|- .-.+.+.++..
T Consensus 214 ~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiG-vlh~r~llr~l~e~~~-----------------~~k~d~~~~a~ 275 (423)
T COG4536 214 GIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIG-VLHVRDLLRLLNEKNE-----------------FTKEDILRAAD 275 (423)
T ss_pred eecCCCCHHHHHHHHhhCCCCceeeecCChhHhhh-hhhHHHHHHHhhccCc-----------------ccHhHHHHHhc
Confidence 34678999999999999998888888888765332 2345666666554443 11234556677
Q ss_pred CCCCCCCHHHHHHHhcc--cCCCeEEEEecCCCcchhcchH
Q 022400 193 RPWVIDDLETFKVKWSK--KAWKKAVIFVDNSGADIILGIL 231 (298)
Q Consensus 193 ~~~~~dd~~~~~~~L~~--~~~k~ilyl~DNaGEdiVfD~l 231 (298)
+||.+-+...+...|.+ ...+++-+++|.=|+ + .+.+
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~-i-~GLV 314 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGD-I-QGLV 314 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCc-E-Eeee
Confidence 89999887777766642 125789999999997 4 4554
No 65
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.20 E-value=96 Score=24.34 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=36.6
Q ss_pred CCCCCCCCHHHHHHH-hcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 192 PRPWVIDDLETFKVK-WSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 192 ~~~~~~dd~~~~~~~-L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
.......+...+... +..-..+.++++...+|+ - -+.+-.++.++++|.+|+.....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~-~-~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 32 RIVVISYEAGEFFHGPLENLDPDDLVIIISYSGE-T-RELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp SSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSST-T-HHHHHHHHHHHHTTSEEEEEESS
T ss_pred CcceeccchHHHhhhhcccccccceeEeeecccc-c-hhhhhhhHHHHhcCCeEEEEeCC
Confidence 334444455554333 333235678888889998 3 35555778888899999887743
No 66
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=24.13 E-value=2.6e+02 Score=26.62 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHHHH
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKV 269 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~~~ 269 (298)
++++++++|..=.+..++. +.+.|.+.| .+...+... .|.+.+..+++.+
T Consensus 25 ~~~~liv~d~~~~~~~~~~--v~~~l~~~~-~~~~~~~~~-----~~~~~v~~~~~~~ 74 (339)
T cd08173 25 GGRVLVVTGPTTKSIAGKK--VEALLEDEG-EVDVVIVED-----ATYEEVEKVESSA 74 (339)
T ss_pred CCeEEEEECCchHHHHHHH--HHHHHHhcC-CeEEEEeCC-----CCHHHHHHHHHHh
Confidence 5789999987655344444 456666777 665554444 4777776555444
No 67
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=24.07 E-value=5 Score=31.19 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHhcccCCCeEEEEecCCCcch
Q 022400 200 LETFKVKWSKKAWKKAVIFVDNSGADI 226 (298)
Q Consensus 200 ~~~~~~~L~~~~~k~ilyl~DNaGEdi 226 (298)
+..+++.+..-..+.+-|++|.|||||
T Consensus 54 LNPlYeqlv~LRFRAL~YLaDecgEDi 80 (84)
T PF06967_consen 54 LNPLYEQLVGLRFRALCYLADECGEDI 80 (84)
T ss_pred cChhHHHHHHHHHHHHHHHHHHhCcch
Confidence 444555554322466889999999976
No 68
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.99 E-value=1.2e+02 Score=26.28 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+++++.+-+ |. ++.. +++.|.+.|.+|+++.|..
T Consensus 5 ~~~vlItGa~-g~---iG~~-~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVS-EG---LGYA-VAYFALKEGAQVCINSRNE 39 (238)
T ss_pred CcEEEEECCC-ch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 4677777765 44 4887 9999999999999999854
No 69
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.88 E-value=1.7e+02 Score=25.73 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=26.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
|++++.+-+.| ++.- +++.|.+.|.+|+++.|..+
T Consensus 7 k~~lItGas~g----iG~~-ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 7 KVAIITGASSG----IGRA-AAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CEEEEeCCCCh----HHHH-HHHHHHHCCCEEEEEeCCHH
Confidence 56666655544 5887 99999999999999988643
No 70
>PRK07904 short chain dehydrogenase; Provisional
Probab=23.88 E-value=1.1e+02 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCC-CEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRG-TQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g-~~V~lavk~~P 252 (298)
.+++++.+-+.| ++.- +++.|.+.| .+|++++|...
T Consensus 8 ~~~vlItGas~g----iG~~-la~~l~~~gg~~V~~~~r~~~ 44 (253)
T PRK07904 8 PQTILLLGGTSE----IGLA-ICERYLKNAPARVVLAALPDD 44 (253)
T ss_pred CcEEEEEcCCcH----HHHH-HHHHHHhcCCCeEEEEeCCcc
Confidence 566777776655 5997 999999985 89999988754
No 71
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=23.86 E-value=47 Score=30.28 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=18.0
Q ss_pred hhhHHHhhhccHHHHHHHhhc
Q 022400 42 EIAWLDLFLNSIPSFKKRAES 62 (298)
Q Consensus 42 ~~~w~~~~~~Ci~C~~~qa~~ 62 (298)
.+-|++.+..|+-+=++.|..
T Consensus 101 g~~~L~~yrq~LL~GLr~aa~ 121 (211)
T PF02093_consen 101 GREALRLYRQCLLAGLRGAAR 121 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 457999999999999999854
No 72
>PRK07775 short chain dehydrogenase; Provisional
Probab=23.75 E-value=1.9e+02 Score=26.08 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=25.8
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
|++++.+- +|. ++.- +++.|.+.|.+|+++.|.
T Consensus 11 ~~vlVtGa-~g~---iG~~-la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 11 RPALVAGA-SSG---IGAA-TAIELAAAGFPVALGARR 43 (274)
T ss_pred CEEEEECC-Cch---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 45666654 455 5997 999999999999988874
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=23.66 E-value=1.3e+02 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=25.2
Q ss_pred eEEEEec--------CCCc-chhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 214 KAVIFVD--------NSGA-DIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 214 ~ilyl~D--------NaGE-diVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+|+++++ +.|. +.+.-. +++.|.+.|++|+++.....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~--l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAA--LTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHH--HHHHHHhcCceEEEEecCCC
Confidence 5777776 3343 122232 68889999999999987665
No 74
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.57 E-value=2.6e+02 Score=24.48 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=25.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
|++++.+ -+|. ++.- +++.|.+.|.+|+++.|..
T Consensus 9 k~vlItG-as~g---IG~~-l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 9 KIALVTG-ASRG---IGEA-IAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred CEEEEEC-CCcH---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 5555554 4455 5887 9999999999999998853
No 75
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=23.54 E-value=1.2e+02 Score=26.91 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=28.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.+++++.+-+ |. ++.. +++.|.++|.+|+++.|+.+
T Consensus 12 ~k~ilItGa~-g~---IG~~-la~~l~~~G~~V~~~~r~~~ 47 (259)
T PRK08213 12 GKTALVTGGS-RG---LGLQ-IAEALGEAGARVVLSARKAE 47 (259)
T ss_pred CCEEEEECCC-ch---HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 3677777644 44 4896 99999999999999988654
No 76
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=23.50 E-value=75 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.466 Sum_probs=20.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
...+++++-. | |..|+++.|+++|.+|+++.
T Consensus 96 ~d~ivLvSgD-~-----Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 96 PDTIVLVSGD-S-----DFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp -SEEEEE----G-----GGHHHHHHHHHH--EEEEEE
T ss_pred CCEEEEEECc-H-----HHHHHHHHHHHcCCEEEEEE
Confidence 3566666543 2 56699999999999999987
No 77
>PRK06924 short chain dehydrogenase; Provisional
Probab=23.41 E-value=2.1e+02 Score=24.99 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=35.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC----------------CccccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL----------------PSINDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~----------------PilNDaT~~Da~~-~l~~~ 269 (298)
|++++.+ -+|. ++.- +++.|.+.|.+|+++.|.. .+.-|+|-.+... .++++
T Consensus 2 k~vlItG-asgg---iG~~-ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 70 (251)
T PRK06924 2 RYVIITG-TSQG---LGEA-IANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEI 70 (251)
T ss_pred cEEEEec-CCch---HHHH-HHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHH
Confidence 3455555 5555 6886 9999999999999998865 2345666665554 55544
No 78
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=23.32 E-value=1.6e+02 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHHHHhhhhhhhh
Q 022400 233 FARELLRRGTQVILAANDLPSINDVTYPELIEIMSKVTENMKIKS 277 (298)
Q Consensus 233 li~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~~~a~v~~il~ 277 (298)
|++.|..+|.++-+ ++.-+..|+.++++.+.+.++.++..-++
T Consensus 91 L~~~L~~~G~~ae~--~~~~i~T~a~~eev~~l~~~Lse~~~e~~ 133 (190)
T PF09840_consen 91 LVDALKLLGYKAEY--REDVIKTDAPLEEVVELAERLSEIYKELR 133 (190)
T ss_pred HHHHHHhCCCeeEE--eCCeEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 68888888988876 78877899999999998888887766443
No 79
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=23.16 E-value=1.3e+02 Score=28.25 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=28.5
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+|++++-..|. .+.-.+-|++.|.+.|++|+++..+.
T Consensus 2 ~~i~i~~~g~gG-~~~~~~~la~~L~~~g~ev~vv~~~~ 39 (357)
T PRK00726 2 KKILLAGGGTGG-HVFPALALAEELKKRGWEVLYLGTAR 39 (357)
T ss_pred cEEEEEcCcchH-hhhHHHHHHHHHHhCCCEEEEEECCC
Confidence 368888888887 44444348899999999998887654
No 80
>PRK06179 short chain dehydrogenase; Provisional
Probab=23.07 E-value=2.2e+02 Score=25.38 Aligned_cols=52 Identities=25% Similarity=0.274 Sum_probs=35.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC----------ccccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP----------SINDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P----------ilNDaT~~Da~~-~l~~~ 269 (298)
+++++ +--+|. ++.- +++.|.+.|.+|++..|... +.-|+|-.+-.. .++.+
T Consensus 5 ~~vlV-tGasg~---iG~~-~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 67 (270)
T PRK06179 5 KVALV-TGASSG---IGRA-TAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEV 67 (270)
T ss_pred CEEEE-ecCCCH---HHHH-HHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHH
Confidence 45554 445565 5886 99999999999999998632 233776555444 55544
No 81
>PRK08703 short chain dehydrogenase; Provisional
Probab=23.02 E-value=1.4e+02 Score=26.05 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.+++++.+- +|. ++.- +++.|+++|.+|+++.|...
T Consensus 6 ~k~vlItG~-sgg---iG~~-la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 6 DKTILVTGA-SQG---LGEQ-VAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCEEEEECC-CCc---HHHH-HHHHHHHcCCEEEEEeCChH
Confidence 367777764 454 6997 99999999999999998764
No 82
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.96 E-value=2.2e+02 Score=27.79 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=34.4
Q ss_pred HHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccc
Q 022400 200 LETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSIN 255 (298)
Q Consensus 200 ~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilN 255 (298)
...+.+.+.+...+++++++ +|- .+.- ++..|.+.|.+|+++.++..++.
T Consensus 137 ~~~l~~~l~~~~~~~vvVvG--gG~---~g~e-~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 137 GLALKELLKDEEIKNIVIIG--AGF---IGLE-AVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred HHHHHHHHhhcCCCEEEEEC--CCH---HHHH-HHHHHHhcCCcEEEEeCCcccCc
Confidence 34455555433358899987 354 3553 78889999999999988776554
No 83
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.93 E-value=1.4e+02 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=27.0
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
|++++.+- +|. ++.. +++.|+++|.+|+++.|..
T Consensus 7 k~vlItG~-sg~---iG~~-la~~l~~~G~~V~~~~r~~ 40 (241)
T PRK07454 7 PRALITGA-SSG---IGKA-TALAFAKAGWDLALVARSQ 40 (241)
T ss_pred CEEEEeCC-Cch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 56666654 555 6997 9999999999999999864
No 84
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=22.91 E-value=65 Score=35.04 Aligned_cols=58 Identities=21% Similarity=0.389 Sum_probs=45.0
Q ss_pred cHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 022400 182 SFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~la 247 (298)
++-..+++..+.|++++..+. +.|+.+-==|+.|||-=+|+|+| +..|+..|++|.+.
T Consensus 436 NI~mQLRKccnHPYLF~g~eP------g~pyttdehLv~nSGKm~vLDkL--L~~Lk~~GhRVLIF 493 (971)
T KOG0385|consen 436 NIMMQLRKCCNHPYLFDGAEP------GPPYTTDEHLVTNSGKMLVLDKL--LPKLKEQGHRVLIF 493 (971)
T ss_pred HHHHHHHHhcCCccccCCCCC------CCCCCcchHHHhcCcceehHHHH--HHHHHhCCCeEEEe
Confidence 566778899999999987543 12344555588999998999994 77899999999875
No 85
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.78 E-value=1.7e+02 Score=25.80 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=34.6
Q ss_pred EEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC----C----ccccCCHHHHHHHHHHHhhhhh
Q 022400 215 AVIFVDNSGADIILGILPFARELLRRGTQVILAANDL----P----SINDVTYPELIEIMSKVTENMK 274 (298)
Q Consensus 215 ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~----P----ilNDaT~~Da~~~l~~~a~v~~ 274 (298)
|=||+-.|-. -.+.. +++++.++|.+|+++.... | .++=-|.+|+.+.+.+.+.-.+
T Consensus 20 VR~ItN~SSG--~~G~~-lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~D 84 (185)
T PF04127_consen 20 VRFITNRSSG--KMGAA-LAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSAD 84 (185)
T ss_dssp SEEEEES--S--HHHHH-HHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGS
T ss_pred ceEecCCCcC--HHHHH-HHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcce
Confidence 3345544332 37997 9999999999999998764 2 2445688888874444433334
No 86
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=22.77 E-value=1.2e+02 Score=28.02 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=24.6
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk 249 (298)
+|++++=-.|.++-+.. .|++.|.++|++|+++.+
T Consensus 2 ~i~~~~g~~~g~~~~~~-~La~~L~~~g~eV~vv~~ 36 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPAL-AVAEELIKRGVEVLWLGT 36 (348)
T ss_pred eEEEEeCccHHHHhHHH-HHHHHHHhCCCEEEEEeC
Confidence 46666655555344334 489999999999998875
No 87
>PTZ00130 heat shock protein 90; Provisional
Probab=22.70 E-value=1e+03 Score=26.26 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=27.0
Q ss_pred CHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEE
Q 022400 199 DLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILA 247 (298)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~la 247 (298)
.+++..++++. +.+.|.|++..+=+ .+--- |+++.++++|.+|+++
T Consensus 537 SL~eYv~rMke-~Qk~IYY~t~~s~~-~~~~S-P~lE~~~~kg~EVL~l 582 (814)
T PTZ00130 537 SLDTYIENMKP-DQKFIYYASGDSYE-YLSKI-PQLQIFKKKNIDVVFL 582 (814)
T ss_pred CHHHHHhhhcc-CCeEEEEEeCCCHH-HHhcC-hHHHHHHhCCCeEEEe
Confidence 45555555654 35678888866443 44333 5666666666666655
No 88
>PRK05866 short chain dehydrogenase; Provisional
Probab=22.64 E-value=1.9e+02 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=27.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++.+=+ |. ++.- +++.|.+.|.+|+++.|..
T Consensus 41 k~vlItGas-gg---IG~~-la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 41 KRILLTGAS-SG---IGEA-AAEQFARRGATVVAVARRE 74 (293)
T ss_pred CEEEEeCCC-cH---HHHH-HHHHHHHCCCEEEEEECCH
Confidence 566666654 44 5997 9999999999999999864
No 89
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=22.35 E-value=3.2e+02 Score=26.85 Aligned_cols=61 Identities=11% Similarity=0.220 Sum_probs=33.7
Q ss_pred CHHHHHHHhcccCCCeEEEEecC----CCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHH
Q 022400 199 DLETFKVKWSKKAWKKAVIFVDN----SGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS 267 (298)
Q Consensus 199 d~~~~~~~L~~~~~k~ilyl~DN----aGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~ 267 (298)
-..++-+.+++.+.+++++++|. +|. ++. +.+.|.+.|.++++.-.- --+.|.+.+.++++
T Consensus 36 ~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~---~~~--v~~~L~~~gi~~~~~~~v---~~~P~~~~v~~~~~ 100 (395)
T PRK15454 36 AVSSCGQQAQTRGLKHLFVMADSFLHQAGM---TAG--LTRSLAVKGIAMTLWPCP---VGEPCITDVCAAVA 100 (395)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCcc---HHH--HHHHHHHcCCeEEEECCC---CCCcCHHHHHHHHH
Confidence 34444444443335788888884 343 455 567777778776654211 12556666555443
No 90
>PRK06196 oxidoreductase; Provisional
Probab=22.26 E-value=1.3e+02 Score=28.00 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=28.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+++++.+-+.| ++.- +++.|.+.|.+|+++.|..
T Consensus 26 ~k~vlITGasgg----IG~~-~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 26 GKTAIVTGGYSG----LGLE-TTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCEEEEeCCCch----HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 367777776544 5997 9999999999999999864
No 91
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=22.25 E-value=2e+02 Score=23.23 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=23.4
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEec
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 249 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk 249 (298)
|+|++.+==++. .+. ...+++.|++.|++|.+++-
T Consensus 1 k~i~l~vtGs~~-~~~-~~~~l~~L~~~g~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIA-AYK-APDLLRRLKRAGWEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGG-GGG-HHHHHHHHHTTTSEEEEEES
T ss_pred CEEEEEEECHHH-HHH-HHHHHHHHhhCCCEEEEEEC
Confidence 355555544554 444 55699999999999887753
No 92
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.17 E-value=1.3e+02 Score=25.91 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCeEEEEe--cCCCcchhcchHHHHHHHHhCCCEEEE
Q 022400 212 WKKAVIFV--DNSGADIILGILPFARELLRRGTQVIL 246 (298)
Q Consensus 212 ~k~ilyl~--DNaGEdiVfD~lpli~~L~~~g~~V~l 246 (298)
.++|++|+ -|-|. |-+-.+|+|.++|.+|++
T Consensus 25 ~~~v~il~G~GnNGg----Dgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 25 GPRVLILCGPGNNGG----DGLVAARHLANRGYNVTV 57 (169)
T ss_dssp T-EEEEEE-SSHHHH----HHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECCCCChH----HHHHHHHHHHHCCCeEEE
Confidence 57899998 45555 444599999999999888
No 93
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=22.13 E-value=2.7e+02 Score=23.95 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=35.9
Q ss_pred CCeEEEEecCCCcchhcchHHHHHH-HHhCCCEEEEEecCCCccccCCHHHHHH
Q 022400 212 WKKAVIFVDNSGADIILGILPFARE-LLRRGTQVILAANDLPSINDVTYPELIE 264 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~-L~~~g~~V~lavk~~PilNDaT~~Da~~ 264 (298)
.|++++|+|.-|- =+- -+++ ++..|.+|++.+.+-++=.-+-.-|+..
T Consensus 5 gkKviiiGdRDGi---Pgp--Aie~c~~~~gaevvfs~TeCFVctaagaMDLEn 53 (150)
T PF04723_consen 5 GKKVIIIGDRDGI---PGP--AIEECVKTAGAEVVFSSTECFVCTAAGAMDLEN 53 (150)
T ss_pred CcEEEEEecCCCC---CcH--HHHHHHHhcCceEEEEeeeEEEecccccccHHH
Confidence 5899999999996 444 4554 4556999999999888876666666543
No 94
>PRK06139 short chain dehydrogenase; Provisional
Probab=22.05 E-value=1.5e+02 Score=28.19 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=27.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+++|+.+=.+| ++.. +++.|.+.|.+|+++.|+..
T Consensus 8 k~vlITGAs~G----IG~a-ia~~la~~G~~Vvl~~R~~~ 42 (330)
T PRK06139 8 AVVVITGASSG----IGQA-TAEAFARRGARLVLAARDEE 42 (330)
T ss_pred CEEEEcCCCCH----HHHH-HHHHHHHCCCEEEEEECCHH
Confidence 56666655544 5997 99999999999999998643
No 95
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=21.89 E-value=1.4e+02 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=26.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+++++.+ -+|. ++.- +++.|++.|.+|++..+..+
T Consensus 6 ~~vlItG-~sg~---iG~~-l~~~l~~~G~~v~~~~~~~~ 40 (248)
T PRK05557 6 KVALVTG-ASRG---IGRA-IAERLAAQGANVVINYASSE 40 (248)
T ss_pred CEEEEEC-CCch---HHHH-HHHHHHHCCCEEEEEeCCch
Confidence 5565554 5566 6997 99999999999988777543
No 96
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.71 E-value=1.4e+02 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++|+.+- +|. ++.- +++.|.+.|++|++.++..
T Consensus 7 ~~vlItGa-sg~---iG~~-l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALVTGA-ARG---LGRA-IALRLARAGADVVVHYRSD 40 (249)
T ss_pred CEEEEeCC-Cch---HHHH-HHHHHHHCCCeEEEEeCCC
Confidence 67777665 555 6997 9999999999998877653
No 97
>PRK07856 short chain dehydrogenase; Provisional
Probab=21.67 E-value=2.3e+02 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=34.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC----------ccccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP----------SINDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P----------ilNDaT~~Da~~-~l~~~ 269 (298)
|++++.+-+ |. ++.- +++.|.+.|.+|+++.|... +.-|++-.+... .++++
T Consensus 7 k~~lItGas-~g---IG~~-la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 69 (252)
T PRK07856 7 RVVLVTGGT-RG---IGAG-IARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAI 69 (252)
T ss_pred CEEEEeCCC-ch---HHHH-HHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 566655554 44 4897 99999999999999988541 234666555443 44444
No 98
>PRK08264 short chain dehydrogenase; Validated
Probab=21.53 E-value=1.6e+02 Score=25.57 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=27.1
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCC-EEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGT-QVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~-~V~lavk~~P 252 (298)
+++++. -.+|. ++.- +++.|++.|. +|+++.|...
T Consensus 7 ~~vlIt-Ggsg~---iG~~-la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 7 KVVLVT-GANRG---IGRA-FVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CEEEEE-CCCch---HHHH-HHHHHHHCCcccEEEEecChh
Confidence 455554 45666 6897 9999999998 9999998654
No 99
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=21.50 E-value=2.1e+02 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred EecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 218 FVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 218 l~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
|+--+|. ++.. +++.|.+.|++|+++.|..
T Consensus 3 ItG~~g~---iG~~-la~~l~~~G~~v~~~~r~~ 32 (239)
T TIGR01830 3 VTGASRG---IGRA-IALKLAKEGAKVIITYRSS 32 (239)
T ss_pred EECCCcH---HHHH-HHHHHHHCCCEEEEEeCCc
Confidence 4445665 5886 9999999999998888764
No 100
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=1.9e+02 Score=30.05 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 193 RPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 193 ~~~~~dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
.|-.+..++...++++.. .+.|.|++--+-+ -+ .+-||++-|++.|.+|+|.+
T Consensus 514 ~~~~~TsLdqYveRMK~k-Q~~IyymaGssr~-e~-E~sPfvERLlkKGyEVi~lt 566 (785)
T KOG0020|consen 514 HPTKITSLDQYVERMKEK-QDKIYYMAGSSRK-EV-EKSPFVERLLKKGYEVIYLT 566 (785)
T ss_pred CCCCcccHHHHHHHHhhc-cccEEEecCCcHh-hh-ccCcHHHHHHhcCceEEEEc
Confidence 466777888999998752 5689999887776 44 44499999999999999865
No 101
>PRK08017 oxidoreductase; Provisional
Probab=21.09 E-value=1.4e+02 Score=26.16 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=26.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++.+= +|. ++.. +++.|.+.|.+|+++.|..
T Consensus 3 k~vlVtGa-sg~---IG~~-la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGC-SSG---IGLE-AALELKRRGYRVLAACRKP 36 (256)
T ss_pred CEEEEECC-CCh---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 46666665 454 5997 9999999999999988864
No 102
>PRK09072 short chain dehydrogenase; Provisional
Probab=21.04 E-value=1.5e+02 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=25.7
Q ss_pred EEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 215 AVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 215 ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.++++--+|. ++.- +++.|.+.|.+|+++.|..
T Consensus 7 ~vlItG~s~~---iG~~-ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 7 RVLLTGASGG---IGQA-LAEALAAAGARLLLVGRNA 39 (263)
T ss_pred EEEEECCCch---HHHH-HHHHHHHCCCEEEEEECCH
Confidence 3445555565 5887 9999999999999999864
No 103
>PRK07060 short chain dehydrogenase; Provisional
Probab=20.97 E-value=1.5e+02 Score=25.78 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+++++.+-+.| ++.- +++.|.+.|++|+++.|+.
T Consensus 9 ~~~~lItGa~g~----iG~~-~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 9 GKSVLVTGASSG----IGRA-CAVALAQRGARVVAAARNA 43 (245)
T ss_pred CCEEEEeCCcch----HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 367776655544 5886 9999999999999998864
No 104
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.96 E-value=1.4e+02 Score=27.27 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=28.8
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
+|+|.++..|-=.+.=.+++++.| + |++|++++.+..
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L-r-g~~v~~~~~~~~ 38 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL-R-GHEVTFITSGPA 38 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH-c-cCceEEEEcCCc
Confidence 688888888875566566788888 4 899999888755
No 105
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.95 E-value=2.6e+02 Score=26.78 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHH
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMS 267 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~ 267 (298)
++|+++++|........++ +.+.|.+.|.+++....-.| +.|.+.+..+.+
T Consensus 22 ~~r~liv~d~~~~~~~~~~--v~~~l~~~~~~~~~~~~~~~---~p~~~~v~~~~~ 72 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDK--IKAALEQSGIEITDFIWYGG---ESTYENVERLKK 72 (345)
T ss_pred CCEEEEEeCHHHHHHHHHH--HHHHHHHCCCeEEEEEecCC---CCCHHHHHHHHH
Confidence 4889999997554234444 46667677877654433222 447776665443
No 106
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=20.90 E-value=2.7e+02 Score=25.67 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEe
Q 022400 198 DDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 248 (298)
Q Consensus 198 dd~~~~~~~L~~~~~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lav 248 (298)
+++..+.-...+...+.|+++.-|||- --...= ++++-++.|.+|+.+.
T Consensus 90 eg~~~~~l~~~~i~~~DVliviSnSGr-Npvpie-~A~~~rekGa~vI~vT 138 (243)
T COG4821 90 EGYAKLFLHRLQIRPNDVLIVISNSGR-NPVPIE-VAEYAREKGAKVIAVT 138 (243)
T ss_pred hhHHHHHHHHhcCCCCCEEEEEeCCCC-CCcchH-HHHHHHhcCCeEEEEe
Confidence 344444333333346789999999998 666774 8899999999998764
No 107
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=20.87 E-value=2.7e+02 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=23.3
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
.+.|+++|. +|. --.. .++.|.+.|.+ ++.++|+
T Consensus 61 ~~~ivv~C~-~G~---rs~~-aa~~L~~~G~~-~~~l~GG 94 (100)
T cd01523 61 DQEVTVICA-KEG---SSQF-VAELLAERGYD-VDYLAGG 94 (100)
T ss_pred CCeEEEEcC-CCC---cHHH-HHHHHHHcCce-eEEeCCc
Confidence 467777776 443 1244 78889999999 6666775
No 108
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=20.75 E-value=1.1e+02 Score=24.50 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=19.7
Q ss_pred CcchhcchHHHHHHHHhCCCEEEEEecCCCc
Q 022400 223 GADIILGILPFARELLRRGTQVILAANDLPS 253 (298)
Q Consensus 223 GEdiVfD~lpli~~L~~~g~~V~lavk~~Pi 253 (298)
|.+.+... +++.|.++|++|++++.+..-
T Consensus 13 G~e~~~~~--l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLN--LARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHH--HHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHH--HHHHHHHCCCEEEEEEcCCCc
Confidence 33344444 689999999999999776554
No 109
>PRK12743 oxidoreductase; Provisional
Probab=20.64 E-value=1.4e+02 Score=26.47 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.3
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
|++++.+-+ |. ++.- +++.|.+.|.+|+++.+.
T Consensus 3 k~vlItGas-~g---iG~~-~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTASD-SG---IGKA-CALLLAQQGFDIGITWHS 35 (256)
T ss_pred CEEEEECCC-ch---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 566666654 44 5896 999999999999988653
No 110
>PRK06914 short chain dehydrogenase; Provisional
Probab=20.63 E-value=1.6e+02 Score=26.45 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=25.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++++.+ -+|. ++.- +++.|.+.|++|+++.|..
T Consensus 4 k~~lItG-asg~---iG~~-la~~l~~~G~~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTG-ASSG---FGLL-TTLELAKKGYLVIATMRNP 37 (280)
T ss_pred CEEEEEC-CCch---HHHH-HHHHHHhCCCEEEEEeCCH
Confidence 4555544 4454 5997 9999999999999998864
No 111
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=20.57 E-value=1.5e+02 Score=26.00 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=25.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
|++++.+-+ |. ++.- +++.|.+.|.+|++..|+.
T Consensus 1 k~~lItG~s-g~---iG~~-la~~l~~~G~~v~~~~r~~ 34 (254)
T TIGR02415 1 KVALVTGGA-QG---IGKG-IAERLAKDGFAVAVADLNE 34 (254)
T ss_pred CEEEEeCCC-ch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 356666654 44 4786 9999999999999888763
No 112
>PRK06197 short chain dehydrogenase; Provisional
Probab=20.54 E-value=1.3e+02 Score=27.57 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
.|++++.+-+.| ++.- +++.|.+.|.+|+++.|.
T Consensus 16 ~k~vlItGas~g----IG~~-~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 16 GRVAVVTGANTG----LGYE-TAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CCEEEEcCCCCc----HHHH-HHHHHHHCCCEEEEEeCC
Confidence 366776666554 4997 999999999999999885
No 113
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.53 E-value=1.5e+02 Score=25.58 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=24.2
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecC
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 250 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~ 250 (298)
++|+. --+|. ++.. +++.|.+.|.+|++.+|+
T Consensus 2 ~~lIt-G~sg~---iG~~-la~~l~~~G~~v~~~~r~ 33 (242)
T TIGR01829 2 IALVT-GGMGG---IGTA-ICQRLAKDGYRVAANCGP 33 (242)
T ss_pred EEEEE-CCCCh---HHHH-HHHHHHHCCCEEEEEeCC
Confidence 34444 44565 5887 999999999999998883
No 114
>PRK07062 short chain dehydrogenase; Provisional
Probab=20.48 E-value=2.4e+02 Score=25.04 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.2
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
|++++.+-. |. ++.- +++.|.+.|.+|+++.|..
T Consensus 9 k~~lItGas-~g---iG~~-ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 9 RVAVVTGGS-SG---IGLA-TVELLLEAGASVAICGRDE 42 (265)
T ss_pred CEEEEeCCC-ch---HHHH-HHHHHHHCCCeEEEEeCCH
Confidence 566665544 44 5886 9999999999999998864
No 115
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=20.48 E-value=3.7e+02 Score=25.22 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCccccCCHHHHHHHHHHH
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKV 269 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~PilNDaT~~Da~~~l~~~ 269 (298)
.+++++++|..-.+-.+|. +.+.|.+. .++.+...-.| +.|.+.+..+.+.+
T Consensus 23 ~~~~liv~~~~~~~~~~~~--v~~~l~~~-~~~~~~~~~~~---~p~~~~v~~~~~~~ 74 (332)
T cd07766 23 FDRALVVSDEGVVKGVGEK--VADSLKKL-IAVHIFDGVGP---NPTFEEVKEAVERA 74 (332)
T ss_pred CCeEEEEeCCchhhhHHHH--HHHHHHhc-CcEEEeCCcCC---CcCHHHHHHHHHHH
Confidence 5789999986544334444 45566554 55544433333 37888887665554
No 116
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.45 E-value=1.4e+02 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=25.9
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+++|+ +--+|. ++.. +++.|+++|.+|+++.|..
T Consensus 2 ~~vlI-tGa~g~---lG~~-l~~~l~~~g~~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALV-TGAASG---IGLA-IALALAAAGANVVVNDLGE 35 (255)
T ss_pred CEEEE-cCCcch---HHHH-HHHHHHHCCCEEEEEeCCH
Confidence 34444 445565 5897 9999999999999998864
No 117
>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional
Probab=20.43 E-value=3.6e+02 Score=25.42 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=38.6
Q ss_pred ccHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCCChhHhHHHHHHHHHHHHcCCccchH
Q 022400 51 NSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121 (298)
Q Consensus 51 ~Ci~C~~~qa~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~p~~~~~~~~~r~~~~~~~~~~~~~g~~DPY~ 121 (298)
=|.+...+||........ .+-..-+...++..+ -++. ..+.....+..+-+.+++.+|+.|||.
T Consensus 195 Ic~e~v~rqA~e~~~sl~-~El~~LlIHGlLHLL-GYDH-----e~deEa~~Me~lE~~IL~~Lg~~~PY~ 258 (258)
T PRK13963 195 LCCPVVEKEAREQGKPLE-AHYAHLLVHGALHAQ-GYDH-----EDDEDAAEMEALETDILAKLGFPNPYR 258 (258)
T ss_pred EEHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHc-CCCC-----CChHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 478888888876554322 233333343333333 3342 233334567778888999999999994
No 118
>PRK08278 short chain dehydrogenase; Provisional
Probab=20.26 E-value=3.4e+02 Score=24.45 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=26.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
|++++. --+|. ++.- +++.|.++|.+|+++.|..+
T Consensus 7 k~vlIt-Gas~g---IG~~-ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 7 KTLFIT-GASRG---IGLA-IALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CEEEEE-CCCch---HHHH-HHHHHHHCCCEEEEEecccc
Confidence 555544 44555 5886 99999999999999998654
No 119
>PRK12937 short chain dehydrogenase; Provisional
Probab=20.21 E-value=1.3e+02 Score=26.12 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.+++++.+= +|. ++.. +++.|.++|.+|++..++.+
T Consensus 5 ~~~vlItG~-~~~---iG~~-la~~l~~~g~~v~~~~~~~~ 40 (245)
T PRK12937 5 NKVAIVTGA-SRG---IGAA-IARRLAADGFAVAVNYAGSA 40 (245)
T ss_pred CCEEEEeCC-Cch---HHHH-HHHHHHHCCCEEEEecCCCH
Confidence 355655554 455 5997 99999999999988877543
No 120
>PRK06057 short chain dehydrogenase; Provisional
Probab=20.16 E-value=1.4e+02 Score=26.37 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC
Q 022400 212 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 252 (298)
Q Consensus 212 ~k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P 252 (298)
.+++++.+-+ |. ++.- +++.|.+.|.+|+++.|..+
T Consensus 7 ~~~vlItGas-gg---IG~~-~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 7 GRVAVITGGG-SG---IGLA-TARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred CCEEEEECCC-ch---HHHH-HHHHHHHcCCEEEEEeCCHH
Confidence 3677766665 54 5997 99999999999999987644
No 121
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=20.15 E-value=1.6e+02 Score=27.13 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=28.2
Q ss_pred eEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCC
Q 022400 214 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDL 251 (298)
Q Consensus 214 ~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~ 251 (298)
+.++++--+|. ++.- +++.|++.|++|+..+|..
T Consensus 6 ~~vlVTGatG~---iG~~-l~~~L~~~g~~V~~~~r~~ 39 (322)
T PLN02986 6 KLVCVTGASGY---IASW-IVKLLLLRGYTVKATVRDL 39 (322)
T ss_pred CEEEEECCCcH---HHHH-HHHHHHHCCCEEEEEECCC
Confidence 45677778887 6897 9999999999999888864
No 122
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=20.05 E-value=3.6e+02 Score=23.84 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=35.7
Q ss_pred CeEEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCC---------ccccCCHHHHHH-HHHHH
Q 022400 213 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP---------SINDVTYPELIE-IMSKV 269 (298)
Q Consensus 213 k~ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~P---------ilNDaT~~Da~~-~l~~~ 269 (298)
|++++.+ -+|. ++.. +++.|.+.|.+|+++.+... +.-|+|-.+... .++++
T Consensus 10 k~vlItG-~s~g---IG~~-la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 71 (266)
T PRK06171 10 KIIIVTG-GSSG---IGLA-IVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEI 71 (266)
T ss_pred CEEEEeC-CCCh---HHHH-HHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHH
Confidence 5555554 4454 5997 99999999999999876542 234777766555 55554
No 123
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.03 E-value=1e+02 Score=28.05 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=29.4
Q ss_pred EEEEecCCCcchhcchHHHHHHHHhCCCEEEEEecCCCcc---ccCCHHHH
Q 022400 215 AVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSI---NDVTYPEL 262 (298)
Q Consensus 215 ilyl~DNaGEdiVfD~lpli~~L~~~g~~V~lavk~~Pil---NDaT~~Da 262 (298)
|.+|+- +|- .+.. ++++.+++||+||-.||..-=+ -++|.-+.
T Consensus 3 IaiIgA-sG~---~Gs~-i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~ 48 (211)
T COG2910 3 IAIIGA-SGK---AGSR-ILKEALKRGHEVTAIVRNASKLAARQGVTILQK 48 (211)
T ss_pred EEEEec-Cch---hHHH-HHHHHHhCCCeeEEEEeChHhccccccceeecc
Confidence 444442 454 4676 9999999999999999986444 44554433
Done!