Query 022402
Match_columns 297
No_of_seqs 105 out of 473
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 04:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xfi_A Unknown protein; struct 100.0 1.7E-67 5.7E-72 501.9 26.2 293 5-297 75-367 (367)
2 2g8l_A 287AA long hypothetical 100.0 2.2E-58 7.6E-63 428.4 19.3 255 6-294 41-296 (299)
3 2ffj_A Conserved hypothetical 100.0 2.2E-57 7.5E-62 422.4 19.2 252 6-293 41-299 (300)
4 3pt1_A UPF0364 protein YMR027W 100.0 7.5E-48 2.6E-52 374.6 13.3 267 5-278 88-429 (471)
5 1eik_A RNA polymerase subunit 49.5 7.5 0.00026 28.2 1.8 21 271-291 39-59 (77)
6 1hmj_A RPB5, protein (subunit 48.3 7.4 0.00025 28.3 1.6 21 271-291 37-57 (78)
7 3oti_A CALG3; calicheamicin, T 41.7 28 0.00095 31.4 4.9 35 144-179 22-56 (398)
8 3tsa_A SPNG, NDP-rhamnosyltran 38.6 30 0.001 30.9 4.6 34 144-178 3-36 (391)
9 4fzr_A SSFS6; structural genom 35.6 40 0.0014 30.3 4.9 35 144-179 17-51 (398)
10 3brc_A Conserved protein of un 33.2 18 0.00063 29.3 1.8 29 225-253 76-105 (156)
11 4ayb_H DNA-directed RNA polyme 33.1 20 0.00068 26.3 1.9 20 272-291 46-65 (84)
12 3h4t_A Glycosyltransferase GTF 30.0 38 0.0013 30.9 3.8 35 144-179 2-36 (404)
13 3ia7_A CALG4; glycosysltransfe 27.4 63 0.0021 28.7 4.7 35 143-178 5-39 (402)
14 3gpi_A NAD-dependent epimerase 26.6 57 0.0019 27.8 4.1 34 143-182 4-37 (286)
15 1edz_A 5,10-methylenetetrahydr 25.5 2.1E+02 0.0073 25.8 7.9 36 142-182 177-212 (320)
16 2fcj_A Small toprim domain pro 24.9 1.3E+02 0.0044 23.3 5.4 52 142-200 50-105 (119)
17 4amg_A Snogd; transferase, pol 22.8 89 0.0031 27.7 4.8 34 144-178 24-57 (400)
18 2p6p_A Glycosyl transferase; X 22.5 82 0.0028 27.9 4.5 35 144-179 2-36 (384)
19 3otg_A CALG1; calicheamicin, T 22.2 95 0.0032 27.7 4.9 37 143-180 21-57 (412)
20 3ius_A Uncharacterized conserv 22.2 85 0.0029 26.6 4.3 34 143-182 6-39 (286)
21 2g1u_A Hypothetical protein TM 21.5 1.3E+02 0.0045 23.1 5.0 33 142-180 19-51 (155)
22 3rsc_A CALG2; TDP, enediyne, s 21.3 1E+02 0.0034 27.6 4.8 35 143-178 21-55 (415)
23 2vvr_A Ribose-5-phosphate isom 20.8 1E+02 0.0035 24.9 4.2 96 144-250 3-110 (149)
No 1
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=100.00 E-value=1.7e-67 Score=501.92 Aligned_cols=293 Identities=84% Similarity=1.307 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 022402 5 ELRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVES 84 (297)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~ 84 (297)
++.+.|.+.++.+.++|+++++|+.|.+..++++++.+.+|.+|||+++|+++|..|+++++.+.+.+++++++.++|.+
T Consensus 75 ~f~~~~~~~l~~l~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~ 154 (367)
T 1xfi_A 75 KFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLEN 154 (367)
T ss_dssp HHHHHHHHHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 35678888899999999999998788999999999999999999999999999999999999999888777656679999
Q ss_pred HHHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHH
Q 022402 85 LIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFA 164 (297)
Q Consensus 85 ~lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~ 164 (297)
++|+++|||++|||+....+.|+++..++.+.++++.+++|++||++++|++|++.++++|+||+||||+|+|+|++|||
T Consensus 155 llr~al~GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La 234 (367)
T 1xfi_A 155 LVRGIFAGNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFA 234 (367)
T ss_dssp HHHHHHHHHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHH
T ss_pred HHHHHHHHhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHH
Confidence 99999999999999987544444445678888888778899999999999999865568999999999988999943599
Q ss_pred HHHHhCCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccCcE
Q 022402 165 RELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADL 244 (297)
Q Consensus 165 ~~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G~~~~~~~l~~~s~el~~~l~~aDL 244 (297)
++|+++|++|++|||++||+||||++|+.|+|++++.++..++.++++++.|+++|+++||++|+++|++|++.|++|||
T Consensus 235 ~~Ll~~g~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~~l~~ADL 314 (367)
T 1xfi_A 235 RELLRRGAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYLSSDADL 314 (367)
T ss_dssp HHHHHTTCEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHHHTTCSE
T ss_pred HHHHHcCCEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHHHHccCCE
Confidence 99999999999999999999999999999999998766566778999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcccceeeccccccccccCCHHHHHHhCCcccCEEEEeccCCC
Q 022402 245 VILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNEVSS 297 (297)
Q Consensus 245 VI~KG~~Ny~~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~~~~~~ 297 (297)
||+||||||+++++++.|+|++++|+++||++||+.+||++|++||+++.+++
T Consensus 315 VI~KG~gNyl~t~~~~~f~~~i~~L~~iKc~~vA~~lg~~~~~~V~~~~~~~~ 367 (367)
T 1xfi_A 315 VIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFKFNEVQS 367 (367)
T ss_dssp EEEESHHHHTTBSTTCCCSSEEEEEEECCCHHHHHHHTCCTTCEEEEEECC--
T ss_pred EEEECCCCCCccchhhhcCcchhHHHhhCcHHHHHHhCCCcCCEEEEeCCCCC
Confidence 99999999998998889999999999999999999999999999999998764
No 2
>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1
Probab=100.00 E-value=2.2e-58 Score=428.44 Aligned_cols=255 Identities=19% Similarity=0.173 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 022402 6 LRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESL 85 (297)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~~ 85 (297)
++..+.+.+..+.+...+..+||. +..++++.+.+.+|+.|||+++|+++|+.|+++++.+.+.+ .++|.++
T Consensus 41 ~~~i~~~~~~~l~~~~~~~~~p~~--~~~~l~r~i~~~~g~~DPy~~~K~~~n~~al~~~~~~~~~l------~d~l~~~ 112 (299)
T 2g8l_A 41 RRRAMILAAKLLAKEYNENAIPAI--AGSLIFLELYKFLGNDDPFIEYKLKSEEMARKVADIIKRKL------KLDFELA 112 (299)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCHHH--HHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHC------CCCHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcHH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 667777777777662244778887 99999999999999999999999999999999999877664 2479999
Q ss_pred HHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHH
Q 022402 86 IRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFAR 165 (297)
Q Consensus 86 lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~~ 165 (297)
+++|+|||++|+|+.... .++.+.+++.++++|.+||++++|+.|++ +++|+||+||||| +|+|++ ||+
T Consensus 113 l~~sl~GN~~D~g~~~~~-------~d~~~~~~~~~~~~~~~dd~~~l~~~l~~--~~~v~~v~DNaGE-iv~Dl~-l~~ 181 (299)
T 2g8l_A 113 VKLAIIGNVIDFSVGFSP-------EDLEEEVEKMLKDKLYIDDSKELFEEVKR--AENILYITDNVGE-HYFDAI-LIE 181 (299)
T ss_dssp HHHHHHHHHCCTTSCSCH-------HHHHHHHHHHHTSCCSEECHHHHHHHHHH--CSEEEEECCBTTH-HHHHHH-HHH
T ss_pred HHHHHHHHHHhhccccCC-------CCHHHHHHHHhhcCCCcccHHHHHHHhcc--CCEEEEEecCCcc-HHHhHH-HHH
Confidence 999999999999974321 23455666667889999999999999986 5899999999995 999997 999
Q ss_pred HHHh-CCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeecccCCcccCcCcccccHHHHHHhccCcE
Q 022402 166 ELLR-RGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVIDLTAVSQELAYLASDADL 244 (297)
Q Consensus 166 ~L~~-~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G~~~~~~~l~~~s~el~~~l~~aDL 244 (297)
+|++ +|++|++|||++||+||||++|+.|+ ++++ +..+|++|+++||++|+++|++|++.|++|||
T Consensus 182 ~Ll~~~g~~V~~~vK~~P~vnDvT~~D~~~~------------~~~~-~~~vi~~G~~~~g~~l~~~s~el~~~~~~adL 248 (299)
T 2g8l_A 182 KIREISNAEVYIAGKEGPIINDATVEDLKRA------------GLEK-LGKVISTGTRIVGVPLKLVSREFMEAFNKADV 248 (299)
T ss_dssp HHHHHCCCEEEEEEBSSCCTTBCBHHHHHHT------------TGGG-TSEEEECSSSSSSCCTTTSCHHHHHHHHHCSE
T ss_pred HHHHhcCCeEEEEECCcCceeeCCHHHHHHc------------Ccch-hhhhhcCCCCCCCCChHhCCHHHHHHHhcCCE
Confidence 9999 99999999999999999999999995 6664 67999999999999999999999999999999
Q ss_pred EEEecCCCCCCcccceeeccccccccccCCHHHHHHhCCcccCEEEEecc
Q 022402 245 VILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYNE 294 (297)
Q Consensus 245 VI~KG~~Ny~~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~~~ 294 (297)
||+||||||. + +.-.-.+|+++|+++||+|||+.+|+++|++||++++
T Consensus 249 VI~KG~~Nye-~-L~~d~~~~i~~L~~~Kc~~va~~lG~~~g~~V~~~~~ 296 (299)
T 2g8l_A 249 IIAKGQGNFE-T-LSEINDSRIFFLLKAKCPAVARELKVPKGALVCMRNK 296 (299)
T ss_dssp EEEEHHHHHH-H-HTTSCCTTEEEEEECCSHHHHHHHTSCTTCEEEEECC
T ss_pred EEEeCCchHh-h-hhcCCCCCeehhhhcCCHHHHHHhCCCCCCEEEEecc
Confidence 9999999991 1 0000133444455899999999999999999999864
No 3
>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1
Probab=100.00 E-value=2.2e-57 Score=422.38 Aligned_cols=252 Identities=22% Similarity=0.216 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHcccCCCCCCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 022402 6 LRNLLKEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESL 85 (297)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~~~~~~e~~l~~~i~~~~~~~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~~~~~~l~~~ 85 (297)
++..+.+.+..+.+...+..+||. +...+|+.+.+.+|.+|||+++|+++|+.|+++++.+.+.++. .+++|.++
T Consensus 41 ~~~i~~~~~~~l~~~~~~~~~p~~--~~~~lyr~i~~~~g~~Dpf~~~K~~~n~~a~~~l~~~~~~l~~---~~~~l~~~ 115 (300)
T 2ffj_A 41 ISQCVDESLKILAENYSSRPINAH--LATRIHRRVYEILGVEDPYAEVKARANEVARQVLPLAKEIVEG---SDDPFKTA 115 (300)
T ss_dssp HHHHHHHHHHHHHHC-----CCHH--HHHHHHHHHHHHHTCSCTTHHHHHHHHHHHHHHHHHHHHHHHH---SSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcHH--HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHH
Confidence 667777777777663345677765 5555555555777999999999999999999998988766643 34689999
Q ss_pred HHHHHhhhhhhccchhhhhhhcccCCCHHHHHhhhCCCCCccCcHHHHHHHhccCCCCeEEEEecCCChhhhhchHHHHH
Q 022402 86 IRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFAR 165 (297)
Q Consensus 86 lr~al~GN~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~l~~~L~~~~~~~i~~i~DNaGeeiv~Dll~L~~ 165 (297)
+++|+|||++|+|+.... . +..++.+.+++..+++|++||++++|+.|. ++|+||+|||| |+|+|++ ||+
T Consensus 116 l~~sl~GN~~D~g~~~~~-~---~~~d~~~~~~~~~~~~~~~dd~~~~~~~l~----~~v~~v~DNaG-Eiv~Dll-l~~ 185 (300)
T 2ffj_A 116 VIVSIVGNNFDYGVQGHK-V---VEEEFRDFLKRKVQEGLKINDTERIKELSS----GKVVYLTDNAG-EIFFDTL-LMK 185 (300)
T ss_dssp HHHHHHGGGCCC-------C---HHHHHHHHHHHHHHHCCSEECHHHHHHHTT----SEEEEECCBTT-HHHHHHH-HHH
T ss_pred HHHHHhhHhhhccccccc-c---cCCCHHHHHHHhhccCcCcCCHHHHHHHhc----CCEEEEecCCc-cHHHHHH-HHH
Confidence 999999999999974321 0 012345556566678999999999999996 69999999999 5999999 999
Q ss_pred HHHhCCCEEEEEecCCcccccCChHHHHHHHHHhhhhhhhhccccccceeeccc-CCcccCcCcccccHHHHHHhccCcE
Q 022402 166 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANS-GNDLPVIDLTAVSQELAYLASDADL 244 (297)
Q Consensus 166 ~L~~~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~-G~~~~~~~l~~~s~el~~~l~~aDL 244 (297)
+|+++|.+|++|||++||+||||++|+.|+ ++++ +..+|++ |+++||++|+++|++|++.|++|||
T Consensus 186 ~Ll~~g~~V~~~vK~~P~vnDvT~~D~~~~------------~l~~-~~~vi~~~G~~~~~~~l~~~s~el~~~l~~adL 252 (300)
T 2ffj_A 186 EIKRRCEKLTAVVRGRPIISDATIEDARLA------------RVDK-IADELLTNGKGAIGIIMDELPDETRKALEEADL 252 (300)
T ss_dssp HHHTTCSEEEEEEBSSCCTTBCBHHHHHHT------------THHH-HSSEEEECSSCCSSCCGGGCCHHHHHHHHHCSE
T ss_pred HHHHcCCeEEEEECCcCceecCCHHHHHHh------------hhhH-HHhhhcCCCCCCCCcChHhCCHHHHHHHccCCE
Confidence 999999999999999999999999999996 4443 6789999 9999999999999999999999999
Q ss_pred EEEecCCCCC------CcccceeeccccccccccCCHHHHHHhCCcccCEEEEec
Q 022402 245 VILEGMGRGI------ETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVFKYN 293 (297)
Q Consensus 245 VI~KG~~Ny~------~~~i~~~f~~~~l~l~~~KC~~va~~lg~~~~~~v~~~~ 293 (297)
||+||||||. .+|++|+ +++||+|||+.+|+++|++||++-
T Consensus 253 VI~KG~~Nyr~L~~~~~~~i~~L--------~~~Kc~vva~~lG~~~g~~v~~~~ 299 (300)
T 2ffj_A 253 IVAKGMANYECLSDGSLKPIAFL--------LTAKCEPVARDIGVNVGDMVAKVV 299 (300)
T ss_dssp EEEESHHHHHHHC---CCSEEEE--------EECCSHHHHHHHTSCTTCEEEEEE
T ss_pred EEEECChHHHHHhCCCCcchHHH--------HHhCCHHHHHHhCCCCCCeEEEeC
Confidence 9999999991 2455554 478999999999999999999863
No 4
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-48 Score=374.57 Aligned_cols=267 Identities=20% Similarity=0.158 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHcccCCCCCCCc---hHHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 022402 5 ELRNLLKEILEDMKKDPETHGGP---PDCILLCRLREQVLR--ELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIE--- 76 (297)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~---~e~~l~~~i~~~~~~--~~g~~DPf~~~K~~~n~~a~~~~~~l~~~l~~~~--- 76 (297)
+.||.+.+. ...++|+..| .||||||||++.|.. .++.+|||..+|+.++..+...+..+..++..+.
T Consensus 88 ~~wN~~L~~----~~~~tW~~~pWL~aEcYlYRri~~~f~~s~~~~~~D~F~~qK~~~f~~s~~av~~La~~~~~l~~~~ 163 (471)
T 3pt1_A 88 LSFNEYLKK----HPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQL 163 (471)
T ss_dssp THHHHHHHH----STTCBTTBSBHHHHHHHHHHHHHHHHHHSTTTTTCCTTHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCCCEEeCchHHHHHHHHHHHHHHHccCCCCcCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 358888763 2357899999 999999999999975 6899999999999999988877766655433221
Q ss_pred ----h---------hhHHHHHHHHHHHhhhhhhccchhhhhhhcccCCCHH-HHHhhhCCCCCccCcHHHHHHHhccC--
Q 022402 77 ----D---------EGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFL-ASCQNLVPRPWVIDDLETFKVKWSKK-- 140 (297)
Q Consensus 77 ----~---------~~~~l~~~lr~al~GN~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dd~~~l~~~L~~~-- 140 (297)
. ..+.|.+++++|+|||.+|+|+..+..... ...+. ....+..++++++||++++|+.|.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~f~~~l~isLWGN~~DLsl~~~~~~~~--~~~~~~~~~~~~~~~~ilvdD~~~l~~~L~~~k~ 241 (471)
T 3pt1_A 164 REMKQNPGNEIDDILKVLFKEFIEISLWGNATDLSLLTNATLED--IKSIQGAKARAASESKIVVNDTEKAWEVLTKARA 241 (471)
T ss_dssp HHHHHC-----CHHHHHHHHHHHHHHHHGGGCCHHHHTCCSHHH--HHSHHHHHHHHHHHTTEEEECHHHHHHHHHHHHH
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHhhhhcccccCCcchHh--hhhhhhHHHHHHhhcCccccCHHHHHHHHHHhhc
Confidence 1 135699999999999999999976421000 01121 11223347789999999999999742
Q ss_pred ----CCCeEEEEecCCChhhhhchHHHHHHHHhCC--CEEEEEecCCc-ccccCChHHHHHHHHHhhhh-----------
Q 022402 141 ----AWKKAVIFVDNSGADIILGILPFARELLRRG--TQVILAANDLP-SINDVTYPELIEIMSKLKDE----------- 202 (297)
Q Consensus 141 ----~~~~i~~i~DNaGeeiv~Dll~L~~~L~~~g--~~V~~~vK~~P-~vnDvT~~D~~~~l~~l~~~----------- 202 (297)
+.++|+||+||||+|+|+|++ ||++|+++| .+|+||||++| ||||||++|+.|+|++|..+
T Consensus 242 ~~~~~~~rVdiVlDNaGfEl~~Dl~-Lae~Ll~~gla~~V~~hvK~~PwfVSDvT~~D~~~~l~~L~~~~~~~~~~~~~~ 320 (471)
T 3pt1_A 242 DANSREIRVDFVLDNSGFELYADLM-LAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHDLRDREFFPSGEPSTK 320 (471)
T ss_dssp CSSCCCCEEEEECCBSTHHHHHHHH-HHHHHHHHTSCSEEEEEEBSSCCTTTBCBHHHHHHHHHHHHCTTTSCCCSTTSH
T ss_pred cccCCCceEEEEEeCCcchhhHHHH-HHHHHHHcCCCcEEEEEecCCCceeecCcHHHHHHHHHHHhccccccccccchh
Confidence 235999999999988999999 999999977 69999999999 69999999999999999863
Q ss_pred -hhhhcccc--------ccceeecccCC---cccCcCccccc-----HHHHHHhccCcEEEEecCCCC--C-------C-
Q 022402 203 -KGQLMGVD--------TSKLLIANSGN---DLPVIDLTAVS-----QELAYLASDADLVILEGMGRG--I-------E- 255 (297)
Q Consensus 203 -d~~l~~l~--------~~~~~vi~~G~---~~~~~~l~~~s-----~el~~~l~~aDLVI~KG~~Ny--~-------~- 255 (297)
++.++.++ ++.+.+.++-- ++++..|+... |++++.|++|+|||||||+|| + .
T Consensus 321 ~~~~l~~lg~~~~~~~~~G~~~~~~~~FWT~p~~y~~Mp~~~~~~~~p~L~~~L~~S~LVIFKGDLNYRKL~GD~~W~~t 400 (471)
T 3pt1_A 321 ESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRT 400 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEECGGGGSSCCGGGSSTTCCSSSHHHHHHHHTTCSEEEEEHHHHHHHHHTTBCCCTT
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEeCCCccCCCcchhhCChhhcccCCHHHHHHHhhCcEEEEecchhhhhhccccCCCCC
Confidence 22344444 34444444433 35556666655 799999999999999999999 1 1
Q ss_pred cc------cceeeccccccccccCCHHHH
Q 022402 256 TN------LYAQFKCDSLKIGMVKHPEVA 278 (297)
Q Consensus 256 ~~------i~~~f~~~~l~l~~~KC~~va 278 (297)
++ -|.-..+|.+-|++.|+++++
T Consensus 401 TpF~~al~~f~p~~~~v~aLRT~Kadvvv 429 (471)
T 3pt1_A 401 TKWETAIGPLATNGITSLSLRTCKADVQV 429 (471)
T ss_dssp CCHHHHTGGGGTSSCCEEEEEECCSSCCC
T ss_pred CCHHHHhcccCCCCcceeeeeecccceee
Confidence 11 111234788999999999974
No 5
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=49.52 E-value=7.5 Score=28.17 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=18.3
Q ss_pred ccCCHHHHHHhCCcccCEEEE
Q 022402 271 MVKHPEVAQFLGGRLYDCVFK 291 (297)
Q Consensus 271 ~~KC~~va~~lg~~~~~~v~~ 291 (297)
+-+.+|+|+++|.++||+|=+
T Consensus 39 I~~~DPvar~~G~k~GdVvkI 59 (77)
T 1eik_A 39 IKTTDPVAKAIGAKRGDIVKI 59 (77)
T ss_dssp CBTTSHHHHGGGCCTTCEEEE
T ss_pred eeCcCHhhHHhCCCCCCEEEE
Confidence 458899999999999998855
No 6
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=48.27 E-value=7.4 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.3
Q ss_pred ccCCHHHHHHhCCcccCEEEE
Q 022402 271 MVKHPEVAQFLGGRLYDCVFK 291 (297)
Q Consensus 271 ~~KC~~va~~lg~~~~~~v~~ 291 (297)
+-+.+|+|+++|.+.||+|=.
T Consensus 37 I~~~DPvar~~G~k~GdVvkI 57 (78)
T 1hmj_A 37 IYEDDPVIQEIGAKEGDVVRV 57 (78)
T ss_pred eeCcCHhhHHhCCCCCCEEEE
Confidence 458899999999999998855
No 7
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=41.70 E-value=28 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=30.0
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEec
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 179 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 179 (297)
||++++...+. -+.-+++|++.|.+.|++|+++.-
T Consensus 22 rIl~~~~~~~G-hv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 22 RVLFVSSPGIG-HLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp EEEEECCSSHH-HHGGGHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEcCCCcc-hHhHHHHHHHHHHHCCCEEEEecc
Confidence 89999988877 556677899999999999999864
No 8
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=38.61 E-value=30 Score=30.92 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=28.5
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEe
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAA 178 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~v 178 (297)
+|++++...+. -+.-++||++.|.+.||+|+++.
T Consensus 3 rIl~~~~~~~g-h~~~~~~la~~L~~~GheV~v~~ 36 (391)
T 3tsa_A 3 RVLVVPLPYPT-HLMAMVPLCWALQASGHEVLIAA 36 (391)
T ss_dssp EEEEECCSCHH-HHHTTHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCCCcc-hhhhHHHHHHHHHHCCCEEEEec
Confidence 78888888777 44567789999999999999986
No 9
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=35.55 E-value=40 Score=30.31 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=29.3
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEec
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 179 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 179 (297)
+|++++...+. -+.-++||++.|.+.|++|+++.-
T Consensus 17 rIl~~~~~~~g-h~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 17 RILVIAGCSEG-FVMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp EEEEECCSSHH-HHGGGHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEcCCCcc-hHHHHHHHHHHHHHCCCEEEEEcC
Confidence 89999888777 445566899999999999998863
No 10
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.16 E-value=18 Score=29.28 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=21.0
Q ss_pred CcCcccccHHHHHH-hccCcEEEEecCCCC
Q 022402 225 VIDLTAVSQELAYL-ASDADLVILEGMGRG 253 (297)
Q Consensus 225 ~~~l~~~s~el~~~-l~~aDLVI~KG~~Ny 253 (297)
-+.|+.++.-+... ..+|||||++|.+--
T Consensus 76 lTRmPA~~K~LmAvD~~dADlvIARGRLGv 105 (156)
T 3brc_A 76 LTRMPAVTKALMALDISGADLVIARGRLGV 105 (156)
T ss_dssp GSSSHHHHHHHHHHHHHCCSEEEEEEECSS
T ss_pred cccCcHHHHHHHheeccCCcEEEEcccccC
Confidence 45555566666555 479999999999875
No 11
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=33.14 E-value=20 Score=26.31 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=17.2
Q ss_pred cCCHHHHHHhCCcccCEEEE
Q 022402 272 VKHPEVAQFLGGRLYDCVFK 291 (297)
Q Consensus 272 ~KC~~va~~lg~~~~~~v~~ 291 (297)
.+.+|+|+.+|.++||+|=+
T Consensus 46 ~~~DPva~~~g~k~GdVvkI 65 (84)
T 4ayb_H 46 RASDPVARSINAKPGDIIRI 65 (84)
T ss_dssp ESSSHHHHHHTCCTTCEEEE
T ss_pred cccCHhHHhhCCCCCCEEEE
Confidence 47889999999999998743
No 12
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=30.01 E-value=38 Score=30.88 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEec
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 179 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 179 (297)
||+++++-+..++ .=+++|++.|.+.||+|+++.-
T Consensus 2 rIli~~~gt~Ghv-~p~~~La~~L~~~Gh~V~v~~~ 36 (404)
T 3h4t_A 2 GVLITGCGSRGDT-EPLVALAARLRELGADARMCLP 36 (404)
T ss_dssp CEEEEEESSHHHH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEeCCCCccH-HHHHHHHHHHHHCCCeEEEEeC
Confidence 5788887777745 5556799999999999999864
No 13
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=27.40 E-value=63 Score=28.67 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEe
Q 022402 143 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 178 (297)
Q Consensus 143 ~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~v 178 (297)
.+|++++--+..++.. +++|++.|.+.||+|+++.
T Consensus 5 ~~il~~~~~~~Ghv~~-~~~La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 5 RHILFANVQGHGHVYP-SLGLVSELARRGHRITYVT 39 (402)
T ss_dssp CEEEEECCSSHHHHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEeCCCCccccc-HHHHHHHHHhCCCEEEEEc
Confidence 3788888766664544 4479999999999999987
No 14
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=26.63 E-value=57 Score=27.80 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=28.4
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 022402 143 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 182 (297)
Q Consensus 143 ~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 182 (297)
++|++.+ ||+ ...- +++.|++.|++|+...|..+
T Consensus 4 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 4 SKILIAG--CGD---LGLE-LARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCEEEEC--CSH---HHHH-HHHHHHHTTCCEEEEECTTS
T ss_pred CcEEEEC--CCH---HHHH-HHHHHHHCCCEEEEEeCCcc
Confidence 4788777 597 6887 89999999999999998754
No 15
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=25.54 E-value=2.1e+02 Score=25.82 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.6
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 022402 142 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 182 (297)
Q Consensus 142 ~~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 182 (297)
++++++|+ +|+ + ... |++..|...|.+|+++-|..+
T Consensus 177 gk~vvVIG--~G~-i-VG~-~~A~~L~~~gAtVtv~nR~~~ 212 (320)
T 1edz_A 177 GKKCIVIN--RSE-I-VGR-PLAALLANDGATVYSVDVNNI 212 (320)
T ss_dssp TCEEEEEC--CCT-T-THH-HHHHHHHTTSCEEEEECSSEE
T ss_pred CCEEEEEC--CCc-c-hHH-HHHHHHHHCCCEEEEEeCchH
Confidence 47999998 333 2 223 699999999999998877644
No 16
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.90 E-value=1.3e+02 Score=23.26 Aligned_cols=52 Identities=10% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCeEEEEec--CCChhhhhchHHHHHHHHh--CCCEEEEEecCCcccccCChHHHHHHHHHhh
Q 022402 142 WKKAVIFVD--NSGADIILGILPFARELLR--RGTQVILAANDLPSINDVTYPELIEIMSKLK 200 (297)
Q Consensus 142 ~~~i~~i~D--NaGeeiv~Dll~L~~~L~~--~g~~V~~~vK~~P~vnDvT~~D~~~~l~~l~ 200 (297)
.+.|.+++| -+|+ - +.+.|.+ .|.+..|..|...-|.+++.+++...|+.+.
T Consensus 50 ~r~VIi~TD~D~~Ge-k------IRk~i~~~lp~~~hafi~r~~~gVE~a~~~~I~~aL~~~~ 105 (119)
T 2fcj_A 50 GYDVYLLADADEAGE-K------LRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRAR 105 (119)
T ss_dssp TSEEEEECCSSHHHH-H------HHHHHHHHCTTSEEECCCTTTCSTTTSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCccHH-H------HHHHHHHHCCCCcEEeccCCccCcccCCHHHHHHHHHhcc
Confidence 467888875 4787 2 3344444 4778889999888899999999998877655
No 17
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=22.75 E-value=89 Score=27.70 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=27.7
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEe
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAA 178 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~v 178 (297)
||++++=-+...+.-=+ +|++.|.+.||+|+++.
T Consensus 24 RIL~~~~p~~GHv~P~l-~LA~~L~~rGh~Vt~~t 57 (400)
T 4amg_A 24 RALFITSPGLSHILPTV-PLAQALRALGHEVRYAT 57 (400)
T ss_dssp EEEEECCSSHHHHGGGH-HHHHHHHHTTCEEEEEE
T ss_pred eEEEECCCchhHHHHHH-HHHHHHHHCCCEEEEEe
Confidence 89988766666565555 69999999999999986
No 18
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=22.54 E-value=82 Score=27.94 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=27.7
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEec
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAAN 179 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK 179 (297)
+|++++..+|..+..=+ +|++.|.+.|++|+++.-
T Consensus 2 rIl~~~~~~~Gh~~p~~-~la~~L~~~Gh~V~~~~~ 36 (384)
T 2p6p_A 2 RILFVAAGSPATVFALA-PLATAARNAGHQVVMAAN 36 (384)
T ss_dssp EEEEECCSSHHHHHHHH-HHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCccchHhHHH-HHHHHHHHCCCEEEEEeC
Confidence 68888888877565444 599999999999999863
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=22.24 E-value=95 Score=27.66 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.8
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 022402 143 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 180 (297)
Q Consensus 143 ~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 180 (297)
-+|++++-..|.++.. .++|++.|.+.|++|+++.-.
T Consensus 21 MrIl~~~~~~~Gh~~~-~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 21 MRVLFASLGTHGHTYP-LLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp CEEEEECCSSHHHHGG-GHHHHHHHHHTTCEEEEEECG
T ss_pred eEEEEEcCCCcccHHH-HHHHHHHHHHCCCEEEEEccH
Confidence 3899999777775555 546999999999999998753
No 20
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=22.22 E-value=85 Score=26.56 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.1
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCc
Q 022402 143 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLP 182 (297)
Q Consensus 143 ~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P 182 (297)
.+|++.+ ||+ ...- +++.|++.|++|+..+|..+
T Consensus 6 ~~ilVtG--aG~---iG~~-l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 6 GTLLSFG--HGY---TARV-LSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CEEEEET--CCH---HHHH-HHHHHGGGTCEEEEEESCGG
T ss_pred CcEEEEC--CcH---HHHH-HHHHHHHCCCEEEEEEcChh
Confidence 4788887 488 6886 88999999999999998754
No 21
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=21.47 E-value=1.3e+02 Score=23.14 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=27.3
Q ss_pred CCeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecC
Q 022402 142 WKKAVIFVDNSGADIILGILPFARELLRRGTQVILAAND 180 (297)
Q Consensus 142 ~~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~ 180 (297)
..+|++++ +|. .... +++.|.+.|.+|+++.+.
T Consensus 19 ~~~v~IiG--~G~---iG~~-la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFG--CGR---LGSL-IANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEEC--CSH---HHHH-HHHHHHHTTCEEEEEESC
T ss_pred CCcEEEEC--CCH---HHHH-HHHHHHhCCCeEEEEECC
Confidence 46899997 687 6776 899999999999988764
No 22
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=21.31 E-value=1e+02 Score=27.63 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=28.0
Q ss_pred CeEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEe
Q 022402 143 KKAVIFVDNSGADIILGILPFARELLRRGTQVILAA 178 (297)
Q Consensus 143 ~~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~v 178 (297)
.+|++++--++.++ .=++||++.|.+.|++|+++.
T Consensus 21 ~rIl~~~~~~~GHv-~p~l~La~~L~~~Gh~V~v~~ 55 (415)
T 3rsc_A 21 AHLLIVNVASHGLI-LPTLTVVTELVRRGHRVSYVT 55 (415)
T ss_dssp CEEEEECCSCHHHH-GGGHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEeCCCcccc-ccHHHHHHHHHHCCCEEEEEe
Confidence 47888886666645 555579999999999999988
No 23
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=20.83 E-value=1e+02 Score=24.86 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=52.6
Q ss_pred eEEEEecCCChhhhhchHHHHHHHHhCCCEEEEEecCCcc-cccCChHHHHHHHHHhhhhhhhhccccccceeecccC--
Q 022402 144 KAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPS-INDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSG-- 220 (297)
Q Consensus 144 ~i~~i~DNaGeeiv~Dll~L~~~L~~~g~~V~~~vK~~P~-vnDvT~~D~~~~l~~l~~~d~~l~~l~~~~~~vi~~G-- 220 (297)
+|.+-+|.+|+++=- . +.++|.+.|++|+=+. |+ -..+++.|+-..+-.+-.+.+ -+.+ ..+-.||
T Consensus 3 kIaigsDhaG~~lK~--~-i~~~L~~~G~eV~D~G---~~~~~~~dYpd~a~~va~~V~~g~----~d~G-IliCGTGiG 71 (149)
T 2vvr_A 3 KIAFGCDHVGFILKH--E-IVAHLVERGVEVIDKG---TWSSERTDYPHYASQVALAVAGGE----VDGG-ILICGTGVG 71 (149)
T ss_dssp EEEEEECTTGGGGHH--H-HHHHHHHTTCEEEECC---CCSSSCCCHHHHHHHHHHHHHTTS----SSEE-EEEESSSHH
T ss_pred EEEEEeCchhHHHHH--H-HHHHHHHCCCEEEEeC---CCCCCCCChHHHHHHHHHHHHcCC----CceE-EEEeCCcHH
Confidence 688889999996633 2 5689999999887653 32 234567766553332221111 1111 2344555
Q ss_pred -----CcccCcCcccccHHH----HHHhccCcEEEEecC
Q 022402 221 -----NDLPVIDLTAVSQEL----AYLASDADLVILEGM 250 (297)
Q Consensus 221 -----~~~~~~~l~~~s~el----~~~l~~aDLVI~KG~ 250 (297)
...||..-..|...+ .+.-++|-++-.=|.
T Consensus 72 ~siaANKv~GIRAal~~d~~sA~~ar~hNnaNVl~lG~r 110 (149)
T 2vvr_A 72 ISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSR 110 (149)
T ss_dssp HHHHHHTSTTCCEEECSSHHHHHHHHHHHCCCEEEEETT
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEECcc
Confidence 235666555544444 444466766554443
Done!