BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022403
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like
OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1
Length = 447
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 217/294 (73%), Positives = 250/294 (85%), Gaps = 1/294 (0%)
Query: 2 AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEI 60
++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGRVIEI
Sbjct: 4 SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63
Query: 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 120
A+T + +AVKILS+ ILSAPV D SS DW+ERYLGI+DYS+IILWVLE+AELAA
Sbjct: 64 QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123
Query: 121 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 180
A S +ATAAGVG G VGALG ALGMTGP A AGL AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183
Query: 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 240
TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243
Query: 241 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EV
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEV 297
>sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1
OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2
Length = 424
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 141/274 (51%), Gaps = 38/274 (13%)
Query: 21 EAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILS 80
E + +K S E L A F IPV +FP + IEI +DT++ +AV+ LS+ +LS
Sbjct: 33 EDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLS 92
Query: 81 APVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140
APV DAP + W +RY+GIV++ I++W+L E
Sbjct: 93 APVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLE------------------------ 128
Query: 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPF 200
P + VAA+ G A T+ + F++V+ E +
Sbjct: 129 ---------PPSPRSPAVAASNGFSHDFTTDVLDNGDSAVTSGN-----FFEVLTSSELY 174
Query: 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV 260
K+T VR I ++RWAPFL + ++S L++LLLLSKY+++++P+++ G I+N ITQS V
Sbjct: 175 KNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGV 234
Query: 261 VQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV 294
+ L C G WF+ + +S++GLP MS D +
Sbjct: 235 IHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHI 268
>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens
GN=PRKAG3 PE=1 SV=3
Length = 489
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 37/72 (51%)
Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
I + E K T R I + P + ++ +DS+ + L K R+ +P+++P + ++ +
Sbjct: 261 IYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLH 320
Query: 254 YITQSAVVQGLE 265
+T +++ L
Sbjct: 321 ILTHKRLLKFLH 332
>sp|Q0AIP0|DAPF_NITEC Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91)
GN=dapF PE=1 SV=1
Length = 278
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 43 RIPVLSFPNVPGGRVIEIMA-DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGI 101
R+PV +P G + IEI A P AV+I+ + ++ + P + + ER
Sbjct: 139 RMPV--YPLQIGDKTIEISAVSIGNPHAVQIIPDIDLAPVTTEGPKIEAHPLFPERV--- 193
Query: 102 VDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAA 161
+A + +++ A + F GT GT GA A+ G+ + GL
Sbjct: 194 ---NAGFMQIIDRAHIRLRVFERGTGETLACGT---GACAAVVCGI-----LRGLLDTTV 242
Query: 162 GAAVAGGLAAEKGAGKDAP 180
A+ GG + GKD P
Sbjct: 243 QVAMHGGNLQIRWDGKDKP 261
>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa
GN=PRKAG3 PE=1 SV=2
Length = 514
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 253
I + E K T R I + P + ++ +DS+ + L K R+ +P+++P + + +
Sbjct: 286 IYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGAVLH 345
Query: 254 YITQSAVVQGLE 265
+T +++ L
Sbjct: 346 ILTHKRLLKFLH 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,867,370
Number of Sequences: 539616
Number of extensions: 4371375
Number of successful extensions: 19774
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 18203
Number of HSP's gapped (non-prelim): 1380
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)