Query 022403
Match_columns 297
No_of_seqs 107 out of 119
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 1E-20 2.3E-25 176.7 13.7 128 41-267 161-293 (294)
2 KOG1764 5'-AMP-activated prote 99.8 2.5E-20 5.5E-25 179.9 11.0 201 16-290 2-237 (381)
3 cd04618 CBS_pair_5 The CBS dom 99.6 1E-14 2.2E-19 112.6 10.6 97 55-262 1-97 (98)
4 cd04619 CBS_pair_6 The CBS dom 99.5 1.2E-13 2.5E-18 106.6 11.8 112 56-262 2-113 (114)
5 cd04617 CBS_pair_4 The CBS dom 99.5 8.1E-14 1.8E-18 108.0 10.9 114 56-262 2-117 (118)
6 cd04641 CBS_pair_28 The CBS do 99.5 1.9E-13 4E-18 106.0 12.3 117 56-263 2-120 (120)
7 cd04603 CBS_pair_KefB_assoc Th 99.5 2.6E-13 5.6E-18 104.5 11.3 109 56-262 2-110 (111)
8 cd04643 CBS_pair_30 The CBS do 99.5 1.2E-12 2.7E-17 99.4 12.1 114 56-262 2-115 (116)
9 cd04600 CBS_pair_HPP_assoc Thi 99.5 1.3E-12 2.8E-17 100.7 12.3 122 55-262 2-123 (124)
10 cd04630 CBS_pair_17 The CBS do 99.5 1.2E-12 2.7E-17 100.3 11.6 112 56-262 2-113 (114)
11 COG3448 CBS-domain-containing 99.4 6.8E-13 1.5E-17 127.2 11.4 123 54-267 252-374 (382)
12 cd04627 CBS_pair_14 The CBS do 99.4 2E-12 4.2E-17 100.7 11.5 120 56-261 2-121 (123)
13 cd04593 CBS_pair_EriC_assoc_ba 99.4 2.4E-12 5.3E-17 98.5 11.5 112 56-262 2-114 (115)
14 cd04607 CBS_pair_NTP_transfera 99.4 2.6E-12 5.7E-17 98.0 11.6 110 56-262 3-112 (113)
15 cd04629 CBS_pair_16 The CBS do 99.4 3.6E-12 7.9E-17 96.6 12.0 112 56-262 2-113 (114)
16 cd04586 CBS_pair_BON_assoc Thi 99.4 3.5E-12 7.6E-17 101.0 11.8 133 55-262 2-134 (135)
17 cd04632 CBS_pair_19 The CBS do 99.4 5.7E-12 1.2E-16 98.4 12.4 125 56-262 2-127 (128)
18 cd04623 CBS_pair_10 The CBS do 99.4 4.7E-12 1E-16 95.2 11.4 111 56-262 2-112 (113)
19 cd04640 CBS_pair_27 The CBS do 99.4 5.1E-12 1.1E-16 99.3 11.7 120 56-262 2-125 (126)
20 cd04642 CBS_pair_29 The CBS do 99.4 4.1E-12 9E-17 99.5 11.1 124 56-262 2-125 (126)
21 cd04614 CBS_pair_1 The CBS dom 99.4 6.3E-12 1.4E-16 95.9 11.4 94 56-262 2-95 (96)
22 cd04589 CBS_pair_CAP-ED_DUF294 99.4 1.1E-11 2.4E-16 94.1 12.4 110 56-263 2-111 (111)
23 cd04626 CBS_pair_13 The CBS do 99.4 8.9E-12 1.9E-16 94.6 11.9 109 56-262 2-110 (111)
24 cd04608 CBS_pair_PALP_assoc Th 99.4 5.2E-12 1.1E-16 100.5 10.6 113 56-264 3-124 (124)
25 cd04803 CBS_pair_15 The CBS do 99.4 9.5E-12 2.1E-16 95.6 11.6 120 56-262 2-121 (122)
26 cd04636 CBS_pair_23 The CBS do 99.4 7.8E-12 1.7E-16 98.7 11.4 131 56-263 2-132 (132)
27 cd04625 CBS_pair_12 The CBS do 99.4 9.8E-12 2.1E-16 94.2 11.4 110 56-262 2-111 (112)
28 cd04801 CBS_pair_M50_like This 99.4 7.1E-12 1.5E-16 95.8 10.7 111 56-262 2-113 (114)
29 COG0517 FOG: CBS domain [Gener 99.4 8.6E-12 1.9E-16 94.6 10.8 110 55-261 7-117 (117)
30 cd04621 CBS_pair_8 The CBS dom 99.4 1.8E-11 3.9E-16 99.0 12.9 133 56-262 2-134 (135)
31 cd04635 CBS_pair_22 The CBS do 99.3 1.6E-11 3.5E-16 94.3 11.5 120 56-262 2-121 (122)
32 cd04620 CBS_pair_7 The CBS dom 99.3 1.6E-11 3.4E-16 93.8 11.3 110 56-262 2-114 (115)
33 cd04639 CBS_pair_26 The CBS do 99.3 2.6E-11 5.7E-16 91.7 12.4 109 56-262 2-110 (111)
34 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3E-11 6.5E-16 91.4 12.4 109 56-262 2-110 (111)
35 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 2.8E-11 6.1E-16 91.1 12.1 112 56-262 2-113 (114)
36 cd04595 CBS_pair_DHH_polyA_Pol 99.3 3.5E-11 7.6E-16 91.2 12.6 108 55-262 2-109 (110)
37 PRK01862 putative voltage-gate 99.3 1.4E-11 3E-16 122.9 13.5 132 38-267 441-573 (574)
38 PRK10892 D-arabinose 5-phospha 99.3 1.6E-11 3.6E-16 113.3 12.9 123 43-263 201-323 (326)
39 cd04633 CBS_pair_20 The CBS do 99.3 1.3E-11 2.8E-16 94.7 10.2 119 56-262 2-120 (121)
40 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 4.9E-11 1.1E-15 89.7 12.6 109 56-262 2-110 (111)
41 cd04631 CBS_pair_18 The CBS do 99.3 3E-11 6.5E-16 93.2 11.6 123 56-262 2-124 (125)
42 cd04585 CBS_pair_ACT_assoc2 Th 99.3 3.1E-11 6.7E-16 91.6 11.2 120 56-262 2-121 (122)
43 cd04599 CBS_pair_GGDEF_assoc2 99.3 3.8E-11 8.2E-16 89.7 11.4 102 56-261 2-103 (105)
44 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 5.1E-11 1.1E-15 89.3 11.9 106 56-262 3-108 (109)
45 cd04802 CBS_pair_3 The CBS dom 99.3 3.6E-11 7.9E-16 91.1 11.1 110 56-262 2-111 (112)
46 cd04602 CBS_pair_IMPDH_2 This 99.3 4.2E-11 9.1E-16 92.1 11.3 109 56-262 3-113 (114)
47 cd04588 CBS_pair_CAP-ED_DUF294 99.3 9.1E-11 2E-15 88.6 12.9 108 56-262 2-109 (110)
48 cd04615 CBS_pair_2 The CBS dom 99.3 7.2E-11 1.6E-15 89.6 12.4 110 57-262 3-112 (113)
49 cd04609 CBS_pair_PALP_assoc2 T 99.3 4E-11 8.7E-16 89.7 10.8 110 55-263 1-110 (110)
50 cd04624 CBS_pair_11 The CBS do 99.3 9.6E-11 2.1E-15 88.8 13.0 110 56-262 2-111 (112)
51 cd04590 CBS_pair_CorC_HlyC_ass 99.3 9.9E-11 2.1E-15 88.6 12.8 109 56-262 2-110 (111)
52 PRK11543 gutQ D-arabinose 5-ph 99.3 2.4E-11 5.2E-16 111.6 11.3 122 43-262 196-317 (321)
53 cd04587 CBS_pair_CAP-ED_DUF294 99.3 4.6E-11 1E-15 90.4 10.9 111 56-262 2-112 (113)
54 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.4E-11 1.2E-15 90.3 11.2 101 57-262 3-103 (104)
55 cd04622 CBS_pair_9 The CBS dom 99.3 7.3E-11 1.6E-15 89.3 11.5 111 56-262 2-112 (113)
56 cd02205 CBS_pair The CBS domai 99.3 1.3E-10 2.8E-15 85.1 12.2 111 56-262 2-112 (113)
57 cd04637 CBS_pair_24 The CBS do 99.3 1.3E-10 2.8E-15 89.5 12.5 121 56-263 2-122 (122)
58 cd04605 CBS_pair_MET2_assoc Th 99.3 1.8E-10 3.8E-15 87.1 12.7 108 55-262 2-109 (110)
59 cd04606 CBS_pair_Mg_transporte 99.3 7.8E-11 1.7E-15 89.7 10.7 103 60-264 2-109 (109)
60 COG3620 Predicted transcriptio 99.2 4.9E-11 1.1E-15 106.2 10.9 115 54-267 72-186 (187)
61 cd04601 CBS_pair_IMPDH This cd 99.2 9.8E-11 2.1E-15 87.9 11.0 106 56-262 3-109 (110)
62 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 1.7E-10 3.6E-15 87.2 12.2 111 56-262 3-113 (114)
63 cd04596 CBS_pair_DRTGG_assoc T 99.2 1.5E-10 3.2E-15 88.0 11.9 105 56-262 3-107 (108)
64 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 3.9E-10 8.6E-15 84.8 12.7 109 56-262 2-110 (111)
65 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 2.8E-10 6.1E-15 85.4 11.8 105 56-263 2-106 (106)
66 PRK07807 inosine 5-monophospha 99.2 2.1E-10 4.6E-15 114.3 14.1 129 34-267 79-207 (479)
67 cd04610 CBS_pair_ParBc_assoc T 99.2 3.8E-10 8.3E-15 84.6 12.0 105 55-262 2-106 (107)
68 PRK14869 putative manganese-de 99.2 3.2E-10 6.9E-15 112.4 13.9 196 54-265 75-304 (546)
69 cd04634 CBS_pair_21 The CBS do 99.2 3.6E-10 7.7E-15 91.6 10.7 142 56-263 2-143 (143)
70 TIGR00400 mgtE Mg2+ transporte 99.2 3.1E-10 6.8E-15 111.0 12.3 119 54-274 138-261 (449)
71 PLN02274 inosine-5'-monophosph 99.1 5.1E-10 1.1E-14 112.2 13.3 116 55-266 108-223 (505)
72 PRK07107 inosine 5-monophospha 99.1 3.3E-10 7E-15 113.6 11.6 112 58-264 108-219 (502)
73 cd04584 CBS_pair_ACT_assoc Thi 99.1 2E-09 4.4E-14 82.3 12.7 119 56-262 2-120 (121)
74 TIGR01137 cysta_beta cystathio 99.1 6.3E-10 1.4E-14 107.0 12.1 127 36-264 327-453 (454)
75 COG2905 Predicted signal-trans 99.1 4.3E-10 9.3E-15 114.5 10.0 134 54-284 156-289 (610)
76 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 1.7E-09 3.8E-14 107.8 13.4 124 38-267 82-205 (475)
77 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.5E-09 3.3E-14 89.1 10.4 114 56-249 2-120 (133)
78 TIGR01302 IMP_dehydrog inosine 99.0 1.8E-09 4E-14 106.1 12.6 115 54-265 87-201 (450)
79 cd04591 CBS_pair_EriC_assoc_eu 99.0 3.3E-09 7.1E-14 82.0 11.4 103 55-262 2-104 (105)
80 PTZ00314 inosine-5'-monophosph 99.0 1.4E-09 3.1E-14 108.6 11.8 115 55-265 104-218 (495)
81 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.6E-09 5.7E-14 81.7 10.3 113 56-262 2-118 (119)
82 TIGR00393 kpsF KpsF/GutQ famil 99.0 2.7E-09 5.9E-14 95.1 11.5 114 44-256 155-268 (268)
83 PRK05567 inosine 5'-monophosph 99.0 3.3E-09 7.1E-14 105.1 12.8 111 55-265 95-205 (486)
84 PRK15094 magnesium/cobalt effl 99.0 4.5E-09 9.7E-14 98.2 12.7 133 37-268 58-192 (292)
85 cd04638 CBS_pair_25 The CBS do 99.0 1E-08 2.2E-13 77.4 12.2 104 56-262 2-105 (106)
86 PF00571 CBS: CBS domain CBS d 98.9 5.8E-09 1.2E-13 72.6 7.0 56 205-265 1-56 (57)
87 TIGR03520 GldE gliding motilit 98.9 2E-08 4.4E-13 97.7 13.2 132 35-267 180-313 (408)
88 KOG1764 5'-AMP-activated prote 98.7 7.8E-08 1.7E-12 93.7 11.5 126 55-269 237-363 (381)
89 COG2239 MgtE Mg/Co/Ni transpor 98.5 6.6E-07 1.4E-11 89.4 10.1 122 54-277 139-265 (451)
90 PF00571 CBS: CBS domain CBS d 98.4 6.9E-07 1.5E-11 62.1 6.0 50 55-112 7-56 (57)
91 PRK11573 hypothetical protein; 98.4 4.6E-06 9.9E-11 81.7 13.2 141 31-268 170-314 (413)
92 COG3620 Predicted transcriptio 98.3 1.7E-06 3.8E-11 77.5 6.2 95 187-293 50-147 (187)
93 COG1253 TlyC Hemolysins and re 98.1 4.1E-05 8.8E-10 75.0 12.2 145 30-274 188-336 (429)
94 cd04627 CBS_pair_14 The CBS do 98.1 1.2E-05 2.5E-10 62.6 6.8 54 215-268 1-54 (123)
95 TIGR01186 proV glycine betaine 98.0 7.7E-05 1.7E-09 72.3 12.2 108 58-267 253-360 (363)
96 cd04618 CBS_pair_5 The CBS dom 97.9 2.1E-05 4.5E-10 60.7 5.9 48 217-264 3-50 (98)
97 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.8E-05 3.9E-10 62.5 5.6 55 203-262 58-112 (113)
98 PRK10070 glycine betaine trans 97.9 0.00014 3.1E-09 71.3 12.2 107 58-266 288-394 (400)
99 cd04643 CBS_pair_30 The CBS do 97.9 4.7E-05 1E-09 57.7 6.9 56 217-273 3-58 (116)
100 COG2524 Predicted transcriptio 97.9 2.4E-05 5.2E-10 74.5 5.9 66 197-268 166-231 (294)
101 cd04641 CBS_pair_28 The CBS do 97.8 5.2E-05 1.1E-09 58.7 6.7 50 216-266 2-51 (120)
102 smart00116 CBS Domain in cysta 97.7 0.00011 2.4E-09 46.3 5.7 48 216-264 1-48 (49)
103 COG4109 Predicted transcriptio 97.7 0.00026 5.5E-09 70.2 10.7 114 54-269 197-310 (432)
104 cd04603 CBS_pair_KefB_assoc Th 97.7 6.5E-05 1.4E-09 57.7 4.7 56 44-110 56-111 (111)
105 COG3448 CBS-domain-containing 97.7 4.1E-05 9E-10 74.4 4.4 57 202-263 244-300 (382)
106 cd04631 CBS_pair_18 The CBS do 97.7 0.00012 2.6E-09 56.4 6.0 51 217-267 3-53 (125)
107 PRK14869 putative manganese-de 97.6 0.00012 2.7E-09 73.0 7.0 61 203-268 68-128 (546)
108 PRK11543 gutQ D-arabinose 5-ph 97.6 0.00014 3.1E-09 67.1 7.0 62 202-266 196-257 (321)
109 cd04617 CBS_pair_4 The CBS dom 97.6 0.00023 5.1E-09 55.1 7.0 50 215-265 1-50 (118)
110 cd04600 CBS_pair_HPP_assoc Thi 97.6 0.00025 5.5E-09 54.5 6.7 53 216-269 3-55 (124)
111 TIGR00400 mgtE Mg2+ transporte 97.6 9.4E-05 2E-09 72.9 5.4 53 55-115 203-255 (449)
112 cd04605 CBS_pair_MET2_assoc Th 97.6 0.00035 7.6E-09 52.6 7.1 52 215-267 2-53 (110)
113 cd04614 CBS_pair_1 The CBS dom 97.5 0.00022 4.7E-09 54.4 6.0 48 216-264 2-49 (96)
114 cd04637 CBS_pair_24 The CBS do 97.5 0.00029 6.3E-09 54.2 6.7 50 216-267 2-51 (122)
115 cd04633 CBS_pair_20 The CBS do 97.5 0.00023 5E-09 54.5 6.1 50 215-266 1-50 (121)
116 smart00116 CBS Domain in cysta 97.5 0.00037 8E-09 43.9 6.1 46 57-110 2-47 (49)
117 cd04630 CBS_pair_17 The CBS do 97.5 0.00036 7.8E-09 53.4 7.1 51 216-266 2-52 (114)
118 cd04609 CBS_pair_PALP_assoc2 T 97.5 0.00029 6.3E-09 52.6 6.3 51 215-267 1-51 (110)
119 PRK10892 D-arabinose 5-phospha 97.5 0.00026 5.7E-09 65.8 7.1 63 201-266 200-262 (326)
120 cd04639 CBS_pair_26 The CBS do 97.5 0.00043 9.4E-09 52.2 7.0 51 216-267 2-52 (111)
121 cd04621 CBS_pair_8 The CBS dom 97.5 0.00028 6.1E-09 57.1 6.4 50 216-266 2-51 (135)
122 cd02205 CBS_pair The CBS domai 97.5 0.00054 1.2E-08 49.9 7.2 54 216-270 2-55 (113)
123 cd04624 CBS_pair_11 The CBS do 97.5 0.00043 9.4E-09 52.3 6.8 51 216-267 2-52 (112)
124 cd04592 CBS_pair_EriC_assoc_eu 97.4 0.00044 9.6E-09 56.9 6.7 49 217-266 3-51 (133)
125 TIGR00393 kpsF KpsF/GutQ famil 97.4 0.00045 9.7E-09 61.9 7.2 60 202-265 154-213 (268)
126 PRK01862 putative voltage-gate 97.4 0.00047 1E-08 69.5 8.1 61 200-265 444-504 (574)
127 cd04803 CBS_pair_15 The CBS do 97.4 0.0005 1.1E-08 52.7 6.2 52 216-268 2-53 (122)
128 cd04801 CBS_pair_M50_like This 97.4 0.00061 1.3E-08 52.0 6.4 49 216-265 2-51 (114)
129 cd04588 CBS_pair_CAP-ED_DUF294 97.4 0.00068 1.5E-08 51.1 6.5 49 216-266 2-50 (110)
130 TIGR01137 cysta_beta cystathio 97.4 0.00034 7.4E-09 67.7 6.2 62 200-266 332-393 (454)
131 cd04590 CBS_pair_CorC_HlyC_ass 97.4 0.00074 1.6E-08 51.0 6.7 50 217-266 3-52 (111)
132 cd04608 CBS_pair_PALP_assoc Th 97.3 0.00076 1.6E-08 53.7 7.0 50 216-266 3-52 (124)
133 cd04642 CBS_pair_29 The CBS do 97.3 0.00047 1E-08 54.0 5.6 49 217-266 3-51 (126)
134 cd04623 CBS_pair_10 The CBS do 97.3 0.00093 2E-08 50.1 7.0 51 216-267 2-52 (113)
135 cd04632 CBS_pair_19 The CBS do 97.3 0.00082 1.8E-08 52.4 6.8 50 216-266 2-51 (128)
136 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00061 1.3E-08 53.9 6.1 50 216-266 3-52 (135)
137 cd04629 CBS_pair_16 The CBS do 97.3 0.00062 1.3E-08 51.4 5.9 50 216-266 2-51 (114)
138 COG0517 FOG: CBS domain [Gener 97.3 0.00075 1.6E-08 51.1 6.2 53 216-270 8-60 (117)
139 cd04619 CBS_pair_6 The CBS dom 97.3 0.00092 2E-08 51.5 6.7 49 217-266 3-51 (114)
140 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.00098 2.1E-08 50.9 6.4 50 216-266 2-51 (121)
141 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.0011 2.4E-08 49.8 6.4 50 216-266 2-51 (114)
142 cd04611 CBS_pair_PAS_GGDEF_DUF 97.2 0.0012 2.5E-08 49.5 6.4 49 216-266 2-50 (111)
143 cd04636 CBS_pair_23 The CBS do 97.2 0.00096 2.1E-08 52.6 6.2 52 216-268 2-53 (132)
144 cd04582 CBS_pair_ABC_OpuCA_ass 97.2 0.0011 2.4E-08 49.6 6.2 49 216-265 2-50 (106)
145 cd04596 CBS_pair_DRTGG_assoc T 97.2 0.00089 1.9E-08 50.7 5.4 55 44-109 53-107 (108)
146 TIGR03520 GldE gliding motilit 97.2 0.00077 1.7E-08 66.0 6.3 74 191-266 179-252 (408)
147 cd04615 CBS_pair_2 The CBS dom 97.2 0.0015 3.3E-08 49.4 6.5 49 217-266 3-51 (113)
148 cd04583 CBS_pair_ABC_OpuCA_ass 97.2 0.0017 3.6E-08 48.5 6.7 49 216-265 3-51 (109)
149 cd04800 CBS_pair_CAP-ED_DUF294 97.1 0.0015 3.2E-08 49.3 6.3 48 216-265 2-49 (111)
150 cd04612 CBS_pair_SpoIVFB_EriC_ 97.1 0.0014 2.9E-08 49.2 6.1 49 216-266 2-50 (111)
151 cd04626 CBS_pair_13 The CBS do 97.1 0.0017 3.7E-08 49.1 6.5 50 216-266 2-51 (111)
152 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.0016 3.5E-08 49.2 6.1 49 216-266 2-50 (122)
153 cd04587 CBS_pair_CAP-ED_DUF294 97.1 0.0022 4.7E-08 48.4 6.6 49 216-266 2-50 (113)
154 cd04595 CBS_pair_DHH_polyA_Pol 97.1 0.002 4.4E-08 48.6 6.4 48 216-265 3-50 (110)
155 cd04634 CBS_pair_21 The CBS do 97.0 0.0015 3.3E-08 52.9 6.0 50 216-267 2-51 (143)
156 cd04598 CBS_pair_GGDEF_assoc T 97.0 0.0014 3.1E-08 50.0 5.5 50 216-267 2-52 (119)
157 cd04610 CBS_pair_ParBc_assoc T 97.0 0.0018 3.9E-08 48.4 5.7 47 55-109 60-106 (107)
158 cd04593 CBS_pair_EriC_assoc_ba 97.0 0.0027 5.9E-08 48.4 6.7 51 216-267 2-52 (115)
159 cd04604 CBS_pair_KpsF_GutQ_ass 97.0 0.0022 4.8E-08 48.3 6.1 51 216-267 3-53 (114)
160 cd04607 CBS_pair_NTP_transfera 97.0 0.0034 7.3E-08 47.8 7.0 50 217-267 4-53 (113)
161 cd04635 CBS_pair_22 The CBS do 96.9 0.0024 5.1E-08 49.0 5.6 47 217-264 3-49 (122)
162 PRK15094 magnesium/cobalt effl 96.9 0.0034 7.4E-08 59.1 7.6 73 191-265 55-127 (292)
163 cd04640 CBS_pair_27 The CBS do 96.9 0.0033 7.2E-08 49.3 6.3 46 216-262 2-47 (126)
164 cd04597 CBS_pair_DRTGG_assoc2 96.9 0.0023 5E-08 50.5 5.4 47 55-109 66-112 (113)
165 PRK07107 inosine 5-monophospha 96.8 0.0036 7.8E-08 63.5 7.9 88 162-261 64-153 (502)
166 cd04802 CBS_pair_3 The CBS dom 96.8 0.0044 9.5E-08 46.8 6.5 47 217-265 3-49 (112)
167 cd04620 CBS_pair_7 The CBS dom 96.8 0.0028 6E-08 48.2 5.4 47 55-109 66-114 (115)
168 cd04625 CBS_pair_12 The CBS do 96.8 0.0029 6.2E-08 47.8 5.4 54 44-109 58-111 (112)
169 cd04606 CBS_pair_Mg_transporte 96.8 0.0037 8E-08 47.4 5.9 47 55-109 61-107 (109)
170 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0053 1.1E-07 46.4 6.6 48 217-266 3-50 (111)
171 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.0031 6.7E-08 46.9 5.2 46 55-109 59-104 (105)
172 PRK05567 inosine 5'-monophosph 96.8 0.0037 8E-08 62.5 7.3 49 55-111 156-204 (486)
173 COG4536 CorB Putative Mg2+ and 96.8 0.0062 1.3E-07 60.9 8.7 138 34-269 188-328 (423)
174 PRK07807 inosine 5-monophospha 96.7 0.0019 4.1E-08 65.2 4.4 59 198-261 84-142 (479)
175 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0043 9.3E-08 47.0 5.0 46 55-109 58-103 (104)
176 cd04602 CBS_pair_IMPDH_2 This 96.5 0.008 1.7E-07 46.1 5.9 47 216-262 3-51 (114)
177 cd04622 CBS_pair_9 The CBS dom 96.5 0.0097 2.1E-07 44.8 6.2 47 217-265 3-50 (113)
178 KOG2550 IMP dehydrogenase/GMP 96.4 0.0091 2E-07 60.5 7.5 111 55-263 116-226 (503)
179 cd04601 CBS_pair_IMPDH This cd 96.4 0.0075 1.6E-07 45.1 5.4 46 216-262 3-48 (110)
180 cd04591 CBS_pair_EriC_assoc_eu 96.4 0.0068 1.5E-07 46.7 5.0 46 55-109 59-104 (105)
181 KOG0474 Cl- channel CLC-7 and 96.2 0.018 3.8E-07 60.9 8.5 146 54-263 589-745 (762)
182 cd04638 CBS_pair_25 The CBS do 96.2 0.018 3.9E-07 43.3 6.4 45 217-262 3-47 (106)
183 TIGR01302 IMP_dehydrog inosine 96.2 0.0081 1.7E-07 59.7 5.6 47 216-262 89-137 (450)
184 TIGR01303 IMP_DH_rel_1 IMP deh 96.1 0.0069 1.5E-07 61.2 4.4 58 198-261 83-140 (475)
185 PTZ00314 inosine-5'-monophosph 96.0 0.0071 1.5E-07 61.2 4.3 45 217-261 106-152 (495)
186 KOG0475 Cl- channel CLC-3 and 95.6 0.1 2.2E-06 55.1 10.9 177 14-264 517-694 (696)
187 COG2239 MgtE Mg/Co/Ni transpor 95.6 0.03 6.5E-07 56.6 6.8 56 55-118 204-259 (451)
188 PLN02274 inosine-5'-monophosph 95.6 0.026 5.7E-07 57.4 6.3 49 56-112 174-222 (505)
189 COG1253 TlyC Hemolysins and re 94.6 0.098 2.1E-06 51.6 7.1 80 188-269 191-270 (429)
190 PRK11573 hypothetical protein; 94.5 0.13 2.8E-06 50.9 7.5 73 191-265 175-247 (413)
191 COG4535 CorC Putative Mg2+ and 92.3 0.48 1E-05 45.6 7.2 118 53-268 75-192 (293)
192 TIGR01186 proV glycine betaine 91.9 0.49 1.1E-05 46.2 7.0 51 54-113 309-359 (363)
193 COG2905 Predicted signal-trans 87.8 0.87 1.9E-05 47.9 5.3 48 54-110 221-268 (610)
194 TIGR03415 ABC_choXWV_ATP choli 86.1 1.5 3.1E-05 43.4 5.6 47 217-266 335-381 (382)
195 PRK10070 glycine betaine trans 84.4 2.3 5E-05 42.2 6.1 46 56-110 346-391 (400)
196 KOG0476 Cl- channel CLC-2 and 76.3 2.7 5.9E-05 45.9 3.8 69 199-271 584-653 (931)
197 COG4109 Predicted transcriptio 72.2 5.5 0.00012 40.4 4.5 58 203-263 188-245 (432)
198 COG4175 ProV ABC-type proline/ 66.9 13 0.00028 37.5 5.8 54 212-267 332-385 (386)
199 cd03077 GST_N_Alpha GST_N fami 62.6 7.6 0.00016 29.2 2.6 30 237-270 48-78 (79)
200 COG4535 CorC Putative Mg2+ and 58.7 8.8 0.00019 37.2 2.9 69 200-270 64-132 (293)
201 COG0625 Gst Glutathione S-tran 57.8 12 0.00025 32.4 3.3 50 218-271 29-79 (211)
202 cd02958 UAS UAS family; UAS is 56.3 21 0.00046 28.2 4.4 67 198-268 38-111 (114)
203 KOG0474 Cl- channel CLC-7 and 51.9 12 0.00025 40.5 2.8 64 200-267 579-646 (762)
204 smart00594 UAS UAS domain. 51.6 27 0.00058 28.4 4.3 63 198-264 48-121 (122)
205 COG1125 OpuBA ABC-type proline 50.7 25 0.00055 34.6 4.6 36 227-263 273-308 (309)
206 KOG2550 IMP dehydrogenase/GMP 48.6 18 0.0004 37.4 3.5 62 204-267 106-169 (503)
207 COG1125 OpuBA ABC-type proline 48.2 25 0.00055 34.6 4.2 41 62-110 268-308 (309)
208 TIGR03415 ABC_choXWV_ATP choli 46.8 30 0.00065 34.3 4.6 44 56-109 334-377 (382)
209 PF09308 LuxQ-periplasm: LuxQ, 40.4 20 0.00044 34.0 2.2 32 238-269 129-167 (238)
210 TIGR02196 GlrX_YruB Glutaredox 38.8 55 0.0012 22.5 3.8 47 216-263 26-72 (74)
211 cd03046 GST_N_GTT1_like GST_N 37.2 44 0.00095 23.9 3.1 32 233-268 43-75 (76)
212 PF13417 GST_N_3: Glutathione 36.3 36 0.00077 25.0 2.6 34 232-269 38-72 (75)
213 cd03050 GST_N_Theta GST_N fami 31.6 60 0.0013 23.5 3.1 31 232-266 43-74 (76)
214 PF02798 GST_N: Glutathione S- 31.4 51 0.0011 24.5 2.8 32 232-266 43-76 (76)
215 TIGR02200 GlrX_actino Glutared 31.3 1.1E+02 0.0024 21.6 4.4 30 236-265 47-76 (77)
216 cd03044 GST_N_EF1Bgamma GST_N 28.1 79 0.0017 23.0 3.3 30 234-266 44-74 (75)
217 cd03075 GST_N_Mu GST_N family, 27.4 50 0.0011 25.0 2.1 26 237-266 54-80 (82)
218 cd03047 GST_N_2 GST_N family, 26.9 69 0.0015 23.1 2.7 28 233-264 44-72 (73)
219 cd03045 GST_N_Delta_Epsilon GS 26.7 78 0.0017 22.5 3.0 31 231-265 42-73 (74)
220 cd03040 GST_N_mPGES2 GST_N fam 26.7 73 0.0016 23.0 2.8 33 236-269 43-77 (77)
221 cd03057 GST_N_Beta GST_N famil 24.7 96 0.0021 22.4 3.2 31 234-267 44-75 (77)
222 cd03051 GST_N_GTT2_like GST_N 24.3 88 0.0019 21.8 2.8 29 233-264 44-73 (74)
223 cd03053 GST_N_Phi GST_N family 24.3 86 0.0019 22.5 2.8 29 234-266 46-75 (76)
224 cd03048 GST_N_Ure2p_like GST_N 24.0 1E+02 0.0022 22.6 3.2 35 234-269 45-80 (81)
225 cd03076 GST_N_Pi GST_N family, 23.5 80 0.0017 23.0 2.5 29 234-266 43-72 (73)
226 TIGR01262 maiA maleylacetoacet 22.6 94 0.002 26.5 3.2 33 233-269 44-77 (210)
227 COG4536 CorB Putative Mg2+ and 22.5 1E+02 0.0023 31.7 3.9 70 198-269 195-264 (423)
228 cd01787 GRB7_RA RA (RAS-associ 21.6 88 0.0019 25.5 2.6 28 51-78 10-37 (85)
229 cd01816 Raf_RBD Ubiquitin doma 21.4 1.4E+02 0.003 24.0 3.6 31 48-79 5-36 (74)
230 PRK10542 glutathionine S-trans 21.3 1.1E+02 0.0023 26.0 3.2 32 234-268 45-77 (201)
231 PLN02473 glutathione S-transfe 20.7 1E+02 0.0022 26.5 3.0 34 232-269 45-79 (214)
232 cd03059 GST_N_SspA GST_N famil 20.6 1.3E+02 0.0028 21.2 3.1 28 235-266 43-71 (73)
233 cd03060 GST_N_Omega_like GST_N 20.5 98 0.0021 22.2 2.5 28 231-261 39-66 (71)
234 cd03080 GST_N_Metaxin_like GST 20.3 99 0.0022 22.6 2.5 31 234-268 43-74 (75)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.85 E-value=1e-20 Score=176.72 Aligned_cols=128 Identities=20% Similarity=0.336 Sum_probs=115.6
Q ss_pred hhcCccccCCCCC-----CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 41 FARIPVLSFPNVP-----GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 41 fa~IPVsSfP~~~-----~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
++--.|.|+|+.+ +.+++.+++|+|+.||.|+|++|+|.||||+|.+ +++||++++||..
T Consensus 161 idi~~m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---------k~vGiit~~dI~~------ 225 (294)
T COG2524 161 IDISKMVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD---------KIVGIITLSDIAK------ 225 (294)
T ss_pred EEEeeeeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC---------ceEEEEEHHHHHH------
Confidence 4555688999987 8899999999999999999999999999999998 8999999999998
Q ss_pred HHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhh
Q 022403 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (297)
Q Consensus 116 e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~ 195 (297)
+ + +
T Consensus 226 --a--------------------------i---------------------------------------------a---- 228 (294)
T COG2524 226 --A--------------------------I---------------------------------------------A---- 228 (294)
T ss_pred --H--------------------------H---------------------------------------------H----
Confidence 3 1 1
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++-.++||.++|+.. .++|+.|..+++|+++|.||+++||.|+|. +|+++||||++||+..|+..
T Consensus 229 --~g~~~~kV~~~M~k~----vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 229 --NGNLDAKVSDYMRKN----VITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred --cCCccccHHHHhccC----CceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhcc
Confidence 333579999999999 999999999999999999999999999998 57999999999999988753
No 2
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.83 E-value=2.5e-20 Score=179.88 Aligned_cols=201 Identities=21% Similarity=0.295 Sum_probs=173.3
Q ss_pred hhhHHHHHHhhccCCCCHHHHHHHHhhcCccccCCCCC-----------------------------------CCCcEEe
Q 022403 16 CDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVP-----------------------------------GGRVIEI 60 (297)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~e~Ln~~fa~IPVsSfP~~~-----------------------------------~~~VIeI 60 (297)
|.+|.|..+++.++|+...+.++.+|...|.+.+|..+ +++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 81 (381)
T KOG1764|consen 2 LRADDESLAPEFKPPLRTLSPLNLGFSSRPASRRPEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLPTSSKLVVF 81 (381)
T ss_pred cccccccccccCCcchhhccccccccccCchhccccccccccccccccccccchhHHHHHHHhccCcccccCCcceeEEe
Confidence 56788888888888888888888888888888877654 5677888
Q ss_pred cCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccccch
Q 022403 61 MADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL 140 (297)
Q Consensus 61 ~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~ 140 (297)
+...++.+|+.+|..|.+.++||.|... ++|+|++++.|++..++-....
T Consensus 82 d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~~----------------------- 131 (381)
T KOG1764|consen 82 DTKLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYKS----------------------- 131 (381)
T ss_pred eCCCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhcc-----------------------
Confidence 8888888888888888888888888764 3788888888888753322111
Q ss_pred hhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEe
Q 022403 141 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPV 220 (297)
Q Consensus 141 ~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV 220 (297)
....++++.+++....+..+++.+.+...|.||+.+
T Consensus 132 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 167 (381)
T KOG1764|consen 132 --------------------------------------------KSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSI 167 (381)
T ss_pred --------------------------------------------CCcHHHHhhhhhhhccccchhhhhhccccCCCceee
Confidence 133567889999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhccccccccCCCccc
Q 022403 221 ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS 290 (297)
Q Consensus 221 ~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~lselgLp~~~ 290 (297)
.++.+++++++.|.++|+|||||+|.+.|.+.+|+||.+|+++|..|.+.-||..|..++++|||+|.++
T Consensus 168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~ 237 (381)
T KOG1764|consen 168 SPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS 237 (381)
T ss_pred cCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence 9999999999999999999999999888899999999999999999999999999999999999999988
No 3
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=1e-14 Score=112.58 Aligned_cols=97 Identities=22% Similarity=0.409 Sum_probs=86.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++++.+.+++|+.+|++.|.++++.+.||+|.+. ++++|+|+..|+.. .
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~-------~~~~Givt~~Dl~~--------~---------------- 49 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK-------QQFVGMLTITDFIL--------I---------------- 49 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC-------CEEEEEEEHHHHhh--------h----------------
Confidence 3789999999999999999999999999999642 27999999999876 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .
T Consensus 50 ----------~---------------------------------------------~----------------------- 51 (98)
T cd04618 50 ----------L---------------------------------------------R----------------------- 51 (98)
T ss_pred ----------e---------------------------------------------e-----------------------
Confidence 1 0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++++++||+|.++|+++|+||++++++
T Consensus 52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7889999999999999999999999999975479999999999975
No 4
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.2e-13 Score=106.55 Aligned_cols=112 Identities=17% Similarity=0.271 Sum_probs=94.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+|..+++++|+.+|.+.|.+++...+||+|.+ ++|+|+|+..++..++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--------g~~~G~vt~~dl~~~~~~~--------------------- 52 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH--------GKLAGVLTKTDVVRQMGRC--------------------- 52 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEehHHHHHHHhhc---------------------
Confidence 67889999999999999999999999999976 3899999999998741110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+...+++|+++|...
T Consensus 53 -------------------------------------------------------------~~~~~~~~v~~~~~~~--- 68 (114)
T cd04619 53 -------------------------------------------------------------GGPGCTAPVENVMTRA--- 68 (114)
T ss_pred -------------------------------------------------------------CCCcccCCHHHHhcCC---
Confidence 0011356788998765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||++++++
T Consensus 69 -~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 69 -VVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred -CeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 8899999999999999999999999999964 69999999999875
No 5
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=8.1e-14 Score=108.04 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=94.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|++.|.++++...||.|.+ ++++|+|+..+|....+.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~--------~~~~Givt~~dl~~~~~~---------------------- 51 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED--------GDLVGVVSRKDLLKASIG---------------------- 51 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHc----------------------
Confidence 67899999999999999999999999999975 389999999998872100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+.+.++.++|... .
T Consensus 52 -------------------------------------------------------------~~~~~~~~~~~~~~~~--~ 68 (118)
T cd04617 52 -------------------------------------------------------------GADLQKVPVGVIMTRM--P 68 (118)
T ss_pred -------------------------------------------------------------CCCccCCCHHHHhCCC--C
Confidence 0112456788888631 2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC--CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~--~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++++.+||||.++ ++++|+||+++++.
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 69 NITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 378999999999999999999999999999863 69999999999874
No 6
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.9e-13 Score=106.01 Aligned_cols=117 Identities=17% Similarity=0.247 Sum_probs=90.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+++..||.....+.. ...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~--------~~~~Giv~~~dl~~~~~~~~-~~~---------------- 56 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN--------GKVVDVYSRFDVINLAKEGA-YNN---------------- 56 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC--------CeEEEEEeHHHHHHHHhcCc-ccc----------------
Confidence 57889999999999999999999999999875 38999999999997421110 000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH--hhhcc
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI--IKSYR 213 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI--~~s~r 213 (297)
....+.+. .+...
T Consensus 57 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 71 (120)
T cd04641 57 -----------------------------------------------------------------LDLTVGEALERRSQD 71 (120)
T ss_pred -----------------------------------------------------------------ccCCHHHHHhhcccC
Confidence 00011111 11222
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+.|+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||+++++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhcC
Confidence 4468899999999999999999999999999974 699999999999863
No 7
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.6e-13 Score=104.48 Aligned_cols=109 Identities=13% Similarity=0.230 Sum_probs=91.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|++.|.+++....||+|.+ ++++|+|+..|+.. ...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~--------~~~--------------- 50 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE--------NKVLGQVTLSDLLE--------IGP--------------- 50 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHh--------hcc---------------
Confidence 46788999999999999999999999999875 38999999999876 100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.+.+++|.++|...
T Consensus 51 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 65 (111)
T cd04603 51 --------------------------------------------------------------NDYETLKVCEVYIVP--- 65 (111)
T ss_pred --------------------------------------------------------------ccccccChhheeecC---
Confidence 112345688888544
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ |++.|+||++++++
T Consensus 66 -~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 66 -VPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred -CcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 7889999999999999999999999999964 69999999999986
No 8
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.2e-12 Score=99.39 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|.+.+.++++...||+|.+ ++++|+|+..+|..|+....+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~------------------ 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE--------GKYVGTISLTDILWKLKGLENL------------------ 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC--------CcEEEEEeHHHHHHHhhccCch------------------
Confidence 67899999999999999999999999999874 3899999999999863211000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.+. ..++++.++|...
T Consensus 56 -----------------------------------------------------~~~~-------~~~~~v~~~~~~~--- 72 (116)
T cd04643 56 -----------------------------------------------------DLER-------LVDLKVIDVMNTD--- 72 (116)
T ss_pred -----------------------------------------------------hHHH-------HhCCcHHHHhcCC---
Confidence 0010 1356788998765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++ .+||+|. ++++.|+||+.++++
T Consensus 73 -~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~ 115 (116)
T cd04643 73 -VPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK 115 (116)
T ss_pred -CceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence 899999999999999998865 5999996 469999999999986
No 9
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=1.3e-12 Score=100.69 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=96.6
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.++.++|.++++...||+|.+ ++++|+|+..+|..++......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~~~~----------------- 56 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD--------RRLVGIVTQRDLLRHARPDGRR----------------- 56 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC--------CCEEEEEEHHHHHhhhcccccc-----------------
Confidence 467899999999999999999999999999875 3899999999998742100000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.. -.+++ .....+++.++|...
T Consensus 57 --------------------------------------------------~~-~~~~~-----~~~~~~~i~~~~~~~-- 78 (124)
T cd04600 57 --------------------------------------------------PL-RGRLR-----GRDKPETVGDIMSPP-- 78 (124)
T ss_pred --------------------------------------------------hh-hhhhh-----cccccccHHHhccCC--
Confidence 00 00111 123566799998664
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|. +|++.|+||++++++
T Consensus 79 --~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~ 123 (124)
T cd04600 79 --VVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA 123 (124)
T ss_pred --CeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence 899999999999999999999999999997 469999999999975
No 10
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.2e-12 Score=100.30 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=93.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|++.|.++++...||.|.+. ++|+|+|+..|+..++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------~~~~G~v~~~dl~~~~~~~~-------------------- 54 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE-------SDAYGIVTMRDILKKVVAEG-------------------- 54 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC-------CcEEEEEehHHHHHHHHhCC--------------------
Confidence 467899999999999999999999999998641 28999999999988532110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....+++.++|..
T Consensus 55 --------------------------------------------------------------~~~~~~~v~~~~~~---- 68 (114)
T cd04630 55 --------------------------------------------------------------RDPDRVNVYEIMTK---- 68 (114)
T ss_pred --------------------------------------------------------------CCCCccCHHHHhcC----
Confidence 01134678899864
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||++++++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 69 PLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 4889999999999999999999999999995 68999999999875
No 11
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.44 E-value=6.8e-13 Score=127.17 Aligned_cols=123 Identities=22% Similarity=0.384 Sum_probs=108.9
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+..|+++..|+|+.+|-++|-+|+|..-||.|+++ |++|||...|+... +.
T Consensus 252 SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~--------rl~GiVt~~dl~~~-------a~-------------- 302 (382)
T COG3448 252 SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHR--------RLVGIVTQRDLLKH-------AR-------------- 302 (382)
T ss_pred CccceecCCcCChHHHHHHHHHcCccccccccccc--------ceeeeeeHHHHhhc-------cC--------------
Confidence 68999999999999999999999999999999985 89999999998772 11
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
++| |+-| ...+.++|+.||++-
T Consensus 303 --------------~~p----------------------------------------~qrl---r~~~~~~vk~imt~~- 324 (382)
T COG3448 303 --------------PSP----------------------------------------FQRL---RFLRPPTVKGIMTTP- 324 (382)
T ss_pred --------------cch----------------------------------------HHHh---hccCCCcccccccCc-
Confidence 122 4444 466899999999987
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
..++++|+++-+.+-+|...+.|-|||+|. .|+++|||||+|+|..|...
T Consensus 325 ---v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 325 ---VVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ---ceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHHH
Confidence 999999999999999999999999999998 57999999999999998754
No 12
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2e-12 Score=100.69 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++++.+|.+.|.++++..+||+|.+. ++++|+|+..|++.++....+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~-------~~~~Giv~~~dl~~~~~~~~~~~~~--------------- 59 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES-------GEVIGILSQRRLVEFLWENARSFPG--------------- 59 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC-------CcEEEEEEHHHHHHHHHHhHHhccc---------------
Confidence 567899999999999999999999999999751 2899999999999864322111100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+... + ...++.+++. .
T Consensus 60 ----------------------------------------------------~~~~~---~----~~~~~~~~~~----~ 76 (123)
T cd04627 60 ----------------------------------------------------LDPLY---P----IPLRDLTIGT----S 76 (123)
T ss_pred ----------------------------------------------------hhhhh---h----hhhhhcccCc----C
Confidence 00000 0 0012234443 3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
++..+.+++++.+++.+|.+++++++||+|.+ ++++|+||++++=
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 48999999999999999999999999999974 6899999999873
No 13
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.42 E-value=2.4e-12 Score=98.51 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=92.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+++++|+.++.+.|.++++...||.|.+ ++|+|+|+..+|...+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~~~~~--------------------- 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD--------GGVVGIITLPDLLRALEAD--------------------- 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC--------CCEEEEEEHHHHHHHHhcc---------------------
Confidence 34678999999999999999999999999875 4899999999998731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....++++++|...
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~~~--- 67 (115)
T cd04593 53 --------------------------------------------------------------EAGEPSAVDEVATPP--- 67 (115)
T ss_pred --------------------------------------------------------------cccccccHHHhccCC---
Confidence 011234577777654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC-CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~-~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.++ |++.|+||+++|++
T Consensus 68 -~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 68 -LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 88899999999999999999999999999752 69999999999985
No 14
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2.6e-12 Score=98.04 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.+|++.|.++++...||.|.+ ++++|+|+..|+..++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~~--------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN--------GRLLGTVTDGDIRRALLKG--------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC--------CCEEEEEEcHHHHHHHhcC---------------------
Confidence 45778999999999999999999999999876 3899999999997731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.. .+++|.++|...
T Consensus 54 --------------------------------------------------------------~~-~~~~v~~~~~~~--- 67 (113)
T cd04607 54 --------------------------------------------------------------LS-LDDPVSEVMNRN--- 67 (113)
T ss_pred --------------------------------------------------------------CC-cCCCHHHhhcCC---
Confidence 01 135688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..|.+++++.+++.+|.+++.+++||+|. ++++.|+||+++|+.
T Consensus 68 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 68 -PITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred -CEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 788999999999999999999999999996 469999999999863
No 15
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3.6e-12 Score=96.55 Aligned_cols=112 Identities=22% Similarity=0.380 Sum_probs=93.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.++++...||+|.+ ++++|+|+..+|..++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~-------------------- 53 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN--------GNLVGFLSEQDCLKQLLESS-------------------- 53 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC--------CeEEEEeehHHHHHHhhhhh--------------------
Confidence 56789999999999999999999999999875 38999999999988532211
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ ....+.++.++|..
T Consensus 54 -------------------------------------------------------~------~~~~~~~v~~~~~~---- 68 (114)
T cd04629 54 -------------------------------------------------------Y------HCDGVATVRDIMTT---- 68 (114)
T ss_pred -------------------------------------------------------h------ccCCCccHHHHhcc----
Confidence 0 00124568888865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. |.+.|+||+.++++
T Consensus 69 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 69 EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4788999999999999999999999999995 69999999999975
No 16
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.5e-12 Score=101.00 Aligned_cols=133 Identities=18% Similarity=0.310 Sum_probs=95.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.++..+++++++.+|+++|.++++...||+|.+ ++++|+|+..+|...+.........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~--------~~~~Gvi~~~dl~~~~~~~~~~~~~-------------- 59 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD--------GRLVGIVSEGDLLRRAELGTERRRA-------------- 59 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC--------CCEEEEeeHHHHHHHhcccCcchhh--------------
Confidence 567889999999999999999999999999875 4899999999998632211100000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
..+.. ....+++...+ ......+++++|..
T Consensus 60 --------~~~~~------------------------------------~~~~~~~~~~~---~~~~~~~v~~~~~~--- 89 (135)
T cd04586 60 --------RWLDL------------------------------------LAGAEELAAAF---VRSHGRKVADVMTR--- 89 (135)
T ss_pred --------hHHHH------------------------------------hcchHHHHHHH---HHhcCCCHHHHhCC---
Confidence 00000 00000000000 01234579999865
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+++||+| +|++.|+||+.++++
T Consensus 90 -~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~ 134 (135)
T cd04586 90 -PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR 134 (135)
T ss_pred -CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence 489999999999999999999999999999 479999999999875
No 17
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.7e-12 Score=98.42 Aligned_cols=125 Identities=20% Similarity=0.300 Sum_probs=95.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|.++|.++++.+.||+|.+ ++|+|+|+..++..++........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~dl~~~~~~~~~~~~---------------- 57 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN--------GKLTGIVTRHDIVDFVVRDRDKAR---------------- 57 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC--------CcEEEEEEHHHHHHHHhhhhhhcc----------------
Confidence 56789999999999999999999999999986 389999999999875332111000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...+ . + . +.+.+++++++|..
T Consensus 58 ---------~-~~~~----------------------------------~---~-~------~~~~~~~~~~~~~~---- 79 (128)
T cd04632 58 ---------T-GDRS----------------------------------G---E-K------ERMLDLPVYDAMSS---- 79 (128)
T ss_pred ---------h-hhhh----------------------------------h---h-h------hhhccCcHHHHhcC----
Confidence 0 0000 0 0 0 11245678999865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcC-CCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~-~~~~i~niITQSaVI~ 262 (297)
|++.+.++.++.+++.+|.+++.+.+||++. ++++++|+||++++++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4889999999999999999999999999963 4579999999999986
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.7e-12 Score=95.21 Aligned_cols=111 Identities=24% Similarity=0.374 Sum_probs=92.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++|+.++.+.+.++++...||+|.+ ++++|++...++..++.+. .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~Giv~~~~l~~~~~~~---~----------------- 53 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG--------GRLVGIFSERDIVRKVALR---G----------------- 53 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEehHHHHHHHhhc---C-----------------
Confidence 56789999999999999999999999999875 3899999999998742110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.+++++|..
T Consensus 54 --------------------------------------------------------------~~~~~~~~~~~~~~---- 67 (113)
T cd04623 54 --------------------------------------------------------------ASALDTPVSEIMTR---- 67 (113)
T ss_pred --------------------------------------------------------------CCccccCHHHhcCC----
Confidence 00124568888854
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 68 ~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 68 NVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4888999999999999999999999999996 68999999999976
No 19
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.1e-12 Score=99.25 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=90.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++++.+|++.|.++++...||+|.+ ++++|+|+..||..-... ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~~~~~---~~----------------- 53 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD--------DNFIGVITAVDLLGEEPI---KR----------------- 53 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC--------CcEEEEEEHHHHhhChhh---HH-----------------
Confidence 46889999999999999999999999999975 389999999998851000 00
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ . .......+++|.++|+...
T Consensus 54 ---------~---------------------------------------------~---~~~~~~~~~~v~~im~~~~-- 74 (126)
T cd04640 54 ---------I---------------------------------------------Q---EGGISRSELTVADVMTPKE-- 74 (126)
T ss_pred ---------H---------------------------------------------H---HcCCCchheEHHHhcCchh--
Confidence 0 0 0001123567999995431
Q ss_pred CceEe----cCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPV----ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV----~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+.+.+ .+++++.+++.+|.+++.+.+||+|.+.|++.|+||++++++
T Consensus 75 ~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 75 DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 11223 368899999999999999999999975358999999999975
No 20
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.1e-12 Score=99.51 Aligned_cols=124 Identities=19% Similarity=0.259 Sum_probs=90.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.+|++.|.++++...||+|.+ ++|+|+|+..|+............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~~---------------- 57 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK--------GKLIGNISASDLKGLLLSPDDLLL---------------- 57 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC--------CcEEEEEEHHHhhhhhcCcchhhc----------------
Confidence 57889999999999999999999999999876 389999999999874221110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.| .. .+.+.. + ++++.+. ....
T Consensus 58 -------------~~------------------------------~~------~~~~~~---~-----~~~~~~~-~~~~ 79 (126)
T cd04642 58 -------------YR------------------------------TI------TFKELS---E-----KFTDSDG-VKSR 79 (126)
T ss_pred -------------cc------------------------------ch------hhhhhh---h-----hcccccc-cccC
Confidence 00 00 000000 0 1122111 2345
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+.+++++.+++.+|.+++.+++||+|.+ ++++|+||++++++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 68899999999999999999999999999974 69999999999986
No 21
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=6.3e-12 Score=95.95 Aligned_cols=94 Identities=19% Similarity=0.352 Sum_probs=83.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|++.|.++++..+||+|.+ ++|+|+|+..||.. .
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~--------~~~~Giv~~~dl~~--------~----------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD--------GKLSGIITERDLIA--------K----------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC--------CCEEEEEEHHHHhc--------C-----------------
Confidence 46788999999999999999999999999865 38999999888866 1
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. .
T Consensus 49 ---------~----------------------------------------------------~----------------- 50 (96)
T cd04614 49 ---------S----------------------------------------------------E----------------- 50 (96)
T ss_pred ---------C----------------------------------------------------C-----------------
Confidence 0 0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++++++||+|.+ |++.|+||++++++
T Consensus 51 -~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~ 95 (96)
T cd04614 51 -VVTATKRTTVSECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK 95 (96)
T ss_pred -cEEecCCCCHHHHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999975
No 22
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.38 E-value=1.1e-11 Score=94.07 Aligned_cols=110 Identities=25% Similarity=0.321 Sum_probs=91.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.+|++.|.+++....||.|.+ +++|+|+..++.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~~------~----------------- 49 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGD---------PRLGIVTRTDLLDAV------L----------------- 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCC---------eEEEEEEHHHHHHHH------H-----------------
Confidence 45788999999999999999999999999873 799999999987610 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.....+++++++|..
T Consensus 50 ------------------------------------------------------------~~~~~~~~~i~~~~~~---- 65 (111)
T cd04589 50 ------------------------------------------------------------LDGLPSSTPVGEIATF---- 65 (111)
T ss_pred ------------------------------------------------------------cCCCCCCCCHHHHhCC----
Confidence 0011245778898865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..|++++++.+++.+|.+++.+.+||+|. +++.|+||+.+++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~~ 111 (111)
T cd04589 66 PLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLSF 111 (111)
T ss_pred CcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhcC
Confidence 4899999999999999999999999999994 689999999999864
No 23
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=8.9e-12 Score=94.56 Aligned_cols=109 Identities=18% Similarity=0.305 Sum_probs=91.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.++++.+.++++...||+|.+ ++++|+++..++..+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~~~---------------------- 51 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE--------EKLKGVVTFTDILDLDLF---------------------- 51 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC--------CCEEEEEehHHhHHHHhh----------------------
Confidence 56789999999999999999999999999875 389999999999874110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.+|.++|..
T Consensus 52 --------------------------------------------------------------~~~~~~~v~~~~~~---- 65 (111)
T cd04626 52 --------------------------------------------------------------ESFLEKKVFNIVSQ---- 65 (111)
T ss_pred --------------------------------------------------------------cccccCcHHHHhcC----
Confidence 00023457888764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+++||+|. +++.|+||..++++
T Consensus 66 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 66 DVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 4889999999999999999999999999996 68999999999875
No 24
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.37 E-value=5.2e-12 Score=100.50 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=93.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|++.|.++++...||+|.+ ++++|+|+..+++.-+.+.
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~--------~~~~Gii~~~dl~~~~~~~--------------------- 53 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES--------GKILGMVTLGNLLSSLSSG--------------------- 53 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CCEEEEEEHHHHHHHHHHh---------------------
Confidence 56889999999999999999999999999875 3899999999998721110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..-.+++|.++|...
T Consensus 54 --------------------------------------------------------------~~~~~~~v~~im~~~--- 68 (124)
T cd04608 54 --------------------------------------------------------------KVQPSDPVSKALYKQ--- 68 (124)
T ss_pred --------------------------------------------------------------ccCCCCcHHHHhhcc---
Confidence 011357899999776
Q ss_pred CceEecCCCCHHHHHHHHhhc---------CCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKY---------RLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~---------rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+..+++++++.++..+|.++ +.+.+||+|. +|+++||||..+++++|
T Consensus 69 -~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 69 -FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred -ceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 88999999999999976443 5788899885 47999999999999874
No 25
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.5e-12 Score=95.60 Aligned_cols=120 Identities=18% Similarity=0.314 Sum_probs=95.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.++.++|.++++..+||+|.+ ++++|+|...+|..+........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED--------GKLVGLLTQRDLLRAALSSLSDN----------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC--------CCEEEEEEHHHHHHHhccccccc-----------------
Confidence 67889999999999999999999999999875 38999999999987421110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..++. +...++++.+++...
T Consensus 57 ---------------------------------------------------~~~~~------~~~~~~~v~~~~~~~--- 76 (122)
T cd04803 57 ---------------------------------------------------GEESL------TKERDVPVAEVMKTD--- 76 (122)
T ss_pred ---------------------------------------------------ccccc------ccccCcCHHHhhCCC---
Confidence 00000 122567899998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||..++++
T Consensus 77 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 77 -VLTVTPDTPLREAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred -CeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 8899999999999999999999999999974 69999999999875
No 26
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7.8e-12 Score=98.69 Aligned_cols=131 Identities=23% Similarity=0.314 Sum_probs=96.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++.+.||.|.+ ++++|+|+..+|..|+......... +
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~i~~~~l~~~~~~~~~~~~~-------------~- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE--------GRVVGIVSEGDLIRKIYKGKGLFYV-------------T- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC--------CCEEEEEeHHHHHHHHhccCCcccc-------------c-
Confidence 46789999999999999999999999999875 3899999999999864322110000 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.. +..... + ++-. +....+++.++|...
T Consensus 60 ---------~~-------------------------~~~~~~------~---~~~~------~~~~~~~v~~~~~~~--- 87 (132)
T cd04636 60 ---------LL-------------------------YSVIFL------D---ESKI------KKLLGKKVEEIMTKK--- 87 (132)
T ss_pred ---------cc-------------------------cccccc------c---hHHH------HHHcCCCHHHhccCC---
Confidence 00 000000 0 1111 112345788998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+..+.+++++.+++.+|.+++.+++||+|. |+++|+||+++++++
T Consensus 88 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~~ 132 (132)
T cd04636 88 -VITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIRS 132 (132)
T ss_pred -ceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhcC
Confidence 788999999999999999999999999996 699999999999864
No 27
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.8e-12 Score=94.20 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=88.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++|+.+|.+.|.++++...||.+.+ +|+|+|+..+|..++.+. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~---~----------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERG---------ELVGLLTFREVLQAMAQH---G----------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCC---------EEEEEEEHHHHHHHHHhc---C-----------------
Confidence 46788999999999999999987666666543 899999999998742110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+++|.++|+..
T Consensus 53 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 67 (112)
T cd04625 53 --------------------------------------------------------------AGVLDTTVRAIMNPE--- 67 (112)
T ss_pred --------------------------------------------------------------CchhcCCHHHHhCCC---
Confidence 011245789998654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++.+++||+| ++++.|+||++++++
T Consensus 68 -~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 68 -PIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK 111 (112)
T ss_pred -CeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence 78899999999999999999999999999 468999999999975
No 28
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=7.1e-12 Score=95.81 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=89.8
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++..+.+++|+.+|.+.|.+++ +..+||.|.+ ++++|+|...||.... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~dl~~~~------~---------------- 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE--------GRYVGIISLADLRAIP------T---------------- 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC--------CcEEEEEEHHHHHHHH------H----------------
Confidence 4678899999999999998876 8999999875 3899999999987620 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+.+.++++.++|....
T Consensus 52 ---------------------------------------------------------------~~~~~~~v~~~~~~~~- 67 (114)
T cd04801 52 ---------------------------------------------------------------SQWAQTTVIQVMTPAA- 67 (114)
T ss_pred ---------------------------------------------------------------hhccccchhhhhcccc-
Confidence 0012456888886432
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. ++++.|+||+.+|++
T Consensus 68 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 68 -KLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 3568889999999999999999999999996 468999999998875
No 29
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.36 E-value=8.6e-12 Score=94.60 Aligned_cols=110 Identities=22% Similarity=0.394 Sum_probs=93.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
..++.+.++.++.+|.++|.++++.+.||.+.+ +++|+|+..||+..+....
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~---------~l~Giit~~di~~~~~~~~------------------- 58 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG---------KLVGIITERDILRALAAGG------------------- 58 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHHHhccC-------------------
Confidence 578999999999999999999999999999987 8999999999999411110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+|.++|+.
T Consensus 59 -----------------------------------------------------------------~~~~~v~~v~~~--- 70 (117)
T COG0517 59 -----------------------------------------------------------------KRLLPVKEVMTK--- 70 (117)
T ss_pred -----------------------------------------------------------------CccccHHHhccC---
Confidence 000067777776
Q ss_pred CCceEecCCCCHHHHHHHHhh-cCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSK-YRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK-~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
|.+.+.++.++.+++.+|.+ ++++++||+|.++++++|+||+.+++
T Consensus 71 -~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 71 -PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 68999999999999999999 89999999998534999999999874
No 30
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.8e-11 Score=98.98 Aligned_cols=133 Identities=14% Similarity=0.243 Sum_probs=95.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+..++|+.+|+++|.++++...||+|.+ ++++|+|+..++..+........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~--------~~~~Giv~~~dl~~~~~~~~~~~----------------- 56 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN--------GKPVGVITYRDLAFAEFEDNERG----------------- 56 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC--------CCEEEEEeHHHHHHHhhcccccc-----------------
Confidence 45778999999999999999999999999975 38999999999988532110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ | ++.. . ......+++... ..-.+.+|+++|..
T Consensus 57 ---------~----~-------------------------~~~~-~-~~~~~~~~~~~~---~~~~~~~v~~~~~~---- 89 (135)
T cd04621 57 ---------L----P-------------------------KKSI-K-MKRKAGQKRYRY---VKEVPLVAEDIMTE---- 89 (135)
T ss_pred ---------c----c-------------------------hhhh-h-hhhhcccccccc---cccccccHHHhcCC----
Confidence 0 0 0000 0 000000001000 11135579999865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..|.+++++.+++.+|.+++.+.+||+|. +++.|+||++++++
T Consensus 90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 90 EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 4889999999999999999999999999995 68999999999976
No 31
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.6e-11 Score=94.30 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=93.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++++.|.++++...||+|.+ ++++|+++..+|.... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~------~~~--------------- 52 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA--------GELIGIITRRDIIRAG------SVR--------------- 52 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEcHHHHhhc------ccc---------------
Confidence 56889999999999999999999999999875 4899999999997620 000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. + .++.. +.....++++.++|...
T Consensus 53 ---------~----~------------------------------------~~~~~----~~~~~~~~~~~~~~~~~--- 76 (122)
T cd04635 53 ---------T----S------------------------------------VEDQQ----RTQTKASPTVEKIMSTP--- 76 (122)
T ss_pred ---------c----c------------------------------------ccchh----hhhhhccCcHHHHhcCC---
Confidence 0 0 00000 00011356788888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 77 -VYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred -CeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 8999999999999999999999999999974 79999999999875
No 32
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.6e-11 Score=93.78 Aligned_cols=110 Identities=16% Similarity=0.346 Sum_probs=87.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+++.++.++|+.++.+.+.+++ ....||.|.+ +++|+|+..||.....+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~-------------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG---------RLLGIFTERDIVRLTAIG-------------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCC---------cEEEEEeHHHHHHHHhcC--------------------
Confidence 4577899999999999999888 4556666643 899999999997631000
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+++++++|..
T Consensus 53 ---------------------------------------------------------------~~~~~~~i~~~~~~--- 66 (115)
T cd04620 53 ---------------------------------------------------------------KDLSDLPIGEVMTQ--- 66 (115)
T ss_pred ---------------------------------------------------------------CCccccCHHHhcCC---
Confidence 01124668888854
Q ss_pred CCceEecCC--CCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATD--DSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~--~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.++ +++.+++.+|.+++.+.+||+|.+ |++.|+||++++++
T Consensus 67 -~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 67 -PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred -CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 47888877 789999999999999999999974 69999999999986
No 33
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=2.6e-11 Score=91.71 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=91.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+.+++|+.+|.++|.+++....||+|.+ ++++|+|+..++..++.+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD--------GHLVGLLTRDDLIRALAE---------------------- 51 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC--------CcEEEEeeHHHHHHHHHh----------------------
Confidence 45678999999999999999999999999974 389999999998874210
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...++.|.++|..
T Consensus 52 ---------------------------------------------------------------~~~~~~v~~~~~~---- 64 (111)
T cd04639 52 ---------------------------------------------------------------GGPDAPVRGVMRR---- 64 (111)
T ss_pred ---------------------------------------------------------------cCCCCcHHHHhcC----
Confidence 0013457888754
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++.+|.+++.+.+||+|.+ +++.|+||++++++
T Consensus 65 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 65 DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 58999999999999999999999999999963 69999999999976
No 34
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.33 E-value=3e-11 Score=91.41 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=91.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.+|.+.|.++++...||.|.+ +++|+|...++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~---------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDG---------RLVGIVTDRDLRNRVVAE--------------------- 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECC---------EEEEEEEhHHHHHHHhcc---------------------
Confidence 56789999999999999999999999999873 899999999998621000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+...++++.+++...
T Consensus 52 --------------------------------------------------------------~~~~~~~i~~~~~~~--- 66 (111)
T cd04800 52 --------------------------------------------------------------GLDPDTPVSEVMTAP--- 66 (111)
T ss_pred --------------------------------------------------------------CCCccCCHHHHhCCC---
Confidence 111235688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+++++++.+++.+|.+++.+.+||+|. +++.|+||..+|++
T Consensus 67 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 67 -PITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 889999999999999999999999999996 68999999999985
No 35
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.33 E-value=2.8e-11 Score=91.12 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=93.0
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+.+++++.++.++|.++++...||+|.+ ++++|+|...++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD--------GRLVGIVSLDDIREILFD---------------------- 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC--------CCEEEEEEHHHHHHHHhc----------------------
Confidence 46779999999999999999999999999975 389999999998764100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+...++.++|+..
T Consensus 52 -------------------------------------------------------------~~~~~~~~v~~~~~~~--- 67 (114)
T cd04613 52 -------------------------------------------------------------PSLYDLVVASDIMTKP--- 67 (114)
T ss_pred -------------------------------------------------------------ccccccEEHHHhccCC---
Confidence 0112246788988765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++..|.+++.+.+||+|.+.+++.|+||+.++++
T Consensus 68 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 68 -PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 7889999999999999999999999999862368999999999875
No 36
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=3.5e-11 Score=91.17 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=91.2
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.+|.+.|.++++...||+|.+ +|+|+|...++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~dl~~~~------~---------------- 50 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGG---------RVVGIISRRDVEKAL------R---------------- 50 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCC---------EEEEEEEHHHHHHHH------h----------------
Confidence 467889999999999999999999999999973 899999999987621 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+.+.+.+++++|..
T Consensus 51 ---------------------------------------------------------------~~~~~~~~~~~~~~--- 64 (110)
T cd04595 51 ---------------------------------------------------------------HGLGHAPVKDYMST--- 64 (110)
T ss_pred ---------------------------------------------------------------cccccCcHHHHhcC---
Confidence 01134568888865
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+++.+..++++.+++.+|.+++.+.+||+| +|++.|+||+.++++
T Consensus 65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 478899999999999999999999999999 569999999999875
No 37
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.33 E-value=1.4e-11 Score=122.94 Aligned_cols=132 Identities=12% Similarity=0.184 Sum_probs=108.9
Q ss_pred HHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHH
Q 022403 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (297)
Q Consensus 38 n~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~ 117 (297)
...+..++|..+... +.+.++.++++.|+++.+.+++....||+|++ +|++|+|+..|+...+.+.
T Consensus 441 ~~~L~~~~V~dim~~---~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~--------g~lvGiVt~~dL~~~l~~~--- 506 (574)
T PRK01862 441 RERLRTTQMRELIQP---AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD--------GRFRGAVALKDITSDLLDK--- 506 (574)
T ss_pred hhHHhhCcHHHHhcC---CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC--------CeEEEEEEHHHHHHHhhcc---
Confidence 456788999887653 56789999999999999999999999999976 4899999999987721100
Q ss_pred HHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhc
Q 022403 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (297)
Q Consensus 118 a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~ 197 (297)
T Consensus 507 -------------------------------------------------------------------------------- 506 (574)
T PRK01862 507 -------------------------------------------------------------------------------- 506 (574)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCC-CCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~-~~i~niITQSaVI~~L~~~ 267 (297)
+...+++++|+|+.. +..+++++++.+++.+|.+++.+++||+|.++ +++.|+||++|+++.+.+.
T Consensus 507 ~~~~~~~v~dim~~~----~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 507 RDTTDKTAADYAHTP----FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred cccccchHHHhccCC----CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHhh
Confidence 111235788998765 78999999999999999999999999999754 5899999999999998753
No 38
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.33 E-value=1.6e-11 Score=113.34 Aligned_cols=123 Identities=9% Similarity=0.124 Sum_probs=96.8
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
.++|..+-.. ..+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+|+-.||... + . .
T Consensus 201 ~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~--------g~lvGivt~~Dl~~~-~-----~-~-- 262 (326)
T PRK10892 201 LLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDN--------MKIEGIFTDGDLRRV-F-----D-M-- 262 (326)
T ss_pred cCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC--------CcEEEEEecHHHHHH-H-----h-c--
Confidence 3445555431 2378999999999999999999998666777755 389999999998651 0 0 0
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
.....+
T Consensus 263 --------------------------------------------------------------------------~~~~~~ 268 (326)
T PRK10892 263 --------------------------------------------------------------------------GIDLRQ 268 (326)
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 001235
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++|.++|... ++.+.+++++.+++.+|.+++++++||+| +++++||||++++++.
T Consensus 269 ~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 269 ASIADVMTPG----GIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCHHHhcCCC----CEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 6799999764 88999999999999999999999999998 4589999999999863
No 39
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.3e-11 Score=94.72 Aligned_cols=119 Identities=19% Similarity=0.332 Sum_probs=94.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++|+.++.++|.++++...||+|.+ +++|+++..+|...+.......
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~---------~~~G~v~~~~l~~~~~~~~~~~----------------- 55 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGG---------KLVGIVTEKDIADALRSFRPLV----------------- 55 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECC---------EEEEEEchHHHHHhhhhhhhcc-----------------
Confidence 56789999999999999999999999999863 8999999999987422110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+.. .+...+...++.++|+.
T Consensus 56 ------------------------------------------------------~~~--~~~~~~~~~~~~~~~~~---- 75 (121)
T cd04633 56 ------------------------------------------------------RDR--HQERRIRNLPVSDIMTR---- 75 (121)
T ss_pred ------------------------------------------------------cch--hhhhhhhccCHHHHccC----
Confidence 000 01122355678888865
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 4889999999999999999999999999996 69999999999986
No 40
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.32 E-value=4.9e-11 Score=89.67 Aligned_cols=109 Identities=23% Similarity=0.354 Sum_probs=91.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.+|.+.|.+++....||.|.+ +|+|+++..++..+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~~l~~~~~~~--------------------- 51 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDG---------RPLGIVTERDILRLLASG--------------------- 51 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEeHHHHHHHHhcC---------------------
Confidence 56789999999999999999999999999873 899999999998741100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. + .++++.++|..
T Consensus 52 -------------------------------------------------------~------~--~~~~v~~~~~~---- 64 (111)
T cd04611 52 -------------------------------------------------------P------D--LQTPVGEVMSS---- 64 (111)
T ss_pred -------------------------------------------------------C------C--CCcCHHHhcCC----
Confidence 0 0 24567788755
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+++.+.+++++.+++.+|.+++.+.+||+|. +|++.|+||++++++
T Consensus 65 ~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 65 PLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 4888999999999999999999999999997 468999999999875
No 41
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3e-11 Score=93.17 Aligned_cols=123 Identities=19% Similarity=0.302 Sum_probs=95.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|.++|.++++...||+|.+. ++++|+|+-.++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~-------~~~~G~v~~~dl~~~~~~~~~~~~~--------------- 59 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT-------GKLVGIITATDILKYLGGGEKFNKI--------------- 59 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC-------CEEEEEEEHHHHHHHhhccchhccc---------------
Confidence 568899999999999999999999999998752 3899999999998754322111100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
++.. . .....+++++++...
T Consensus 60 --------------------------------------------~~~~-------~------~~~~~~~~~~~~~~~--- 79 (125)
T cd04631 60 --------------------------------------------KTGN-------G------LEAINEPVRSIMTRN--- 79 (125)
T ss_pred --------------------------------------------cccc-------c------chhhhcCHHHHhcCC---
Confidence 0000 0 112346688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |.+.|+||..+|++
T Consensus 80 -~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 80 -VITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred -ceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 8899999999999999999999999999963 68999999999986
No 42
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.31 E-value=3.1e-11 Score=91.62 Aligned_cols=120 Identities=22% Similarity=0.305 Sum_probs=94.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++...||+|.+ +++|+++..++..|...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~i~~~~l~~~~~~~~~-~----------------- 54 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRG---------KLVGIVTDRDLKLASPSKAT-T----------------- 54 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCC---------eEEEEEeHHHHHHhhhcccc-c-----------------
Confidence 56789999999999999999999999999873 89999999999875211000 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...++. ....+.++.++|...
T Consensus 55 ---------~----------------------------------------~~~~~~------~~~~~~~~~~~~~~~--- 76 (122)
T cd04585 55 ---------L----------------------------------------DIWELY------YLLSKIKVSDIMTRD--- 76 (122)
T ss_pred ---------c----------------------------------------cchhhh------hhhcccCHHHhccCC---
Confidence 0 000111 012456788998764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++..|.+++.+++||+|. +|++.|+||+.++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 77 -PITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred -CeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 889999999999999999999999999996 469999999999986
No 43
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=3.8e-11 Score=89.74 Aligned_cols=102 Identities=16% Similarity=0.298 Sum_probs=87.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.++++..+||.|.+ +++|+|+..++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~Giv~~~~l~~--------~~---------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG---------KLVGIITSRDVRR--------AH---------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECC---------EEEEEEehHHhhc--------cc----------------
Confidence 56789999999999999999999999999843 8999999888865 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.++.++++|..
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~~---- 59 (105)
T cd04599 49 -----------------------------------------------------------------PNRLVADAMTR---- 59 (105)
T ss_pred -----------------------------------------------------------------ccCCHHHHccC----
Confidence 12346777754
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
++..+..++++.+++.+|.+++.+.+||+|. +++.|+||+.+++
T Consensus 60 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 60 EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4889999999999999999999999999995 6999999999987
No 44
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.30 E-value=5.1e-11 Score=89.31 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=89.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++.+.|.++++...||+|.+ ++++|+|+..++..+. .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~dl~~~~------~----------------- 51 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD--------NKLLGIVSLESLEQAY------K----------------- 51 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC--------CcEEEEEEHHHHHHHh------h-----------------
Confidence 46788999999999999999999999999875 3899999999997630 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+++.++|...
T Consensus 52 -----------------------------------------------------------------~~~~v~~~~~~~--- 63 (109)
T cd04583 52 -----------------------------------------------------------------EAKSLEDIMLED--- 63 (109)
T ss_pred -----------------------------------------------------------------cCCcHhHhhcCC---
Confidence 013466777554
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 64 -~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 64 -VFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred -ceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 7889999999999999999999999999974 69999999999875
No 45
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=3.6e-11 Score=91.08 Aligned_cols=110 Identities=20% Similarity=0.362 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.++++.|.+++....||.|.+ +|+|+|+..++..|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~~~~~-------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE---------KPVGIITERDLVKKVVSRN-------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC---------EEEEEEEHHHHHHHHhhcc--------------------
Confidence 56789999999999999999999999999965 8999999999998632110
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+.++.++|..
T Consensus 53 --------------------------------------------------------------~~~~~~~~~~~~~~---- 66 (112)
T cd04802 53 --------------------------------------------------------------LKPREVPVGEVMST---- 66 (112)
T ss_pred --------------------------------------------------------------CCcccCCHHHhcCC----
Confidence 00123467888854
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+.+++++.+++.+|.+++.+.+||+|.+ ++.|+||+.+|++
T Consensus 67 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 67 PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 48889999999999999999999999999953 8999999999986
No 46
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.29 E-value=4.2e-11 Score=92.07 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=86.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.+|.+.|.++++..+||+|.+.. .++++|+|+..++.. ..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~-----~~~~~G~v~~~dl~~--------~~---------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKS-----GGKLLGIVTSRDIDF--------LT---------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCc-----CCEEEEEEEhHHhhh--------hh----------------
Confidence 4578899999999999999999999999986200 038999999877643 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. .+++|+++|...
T Consensus 54 --------------------------------------------------------------~--~~~~v~~~~~~~--- 66 (114)
T cd04602 54 --------------------------------------------------------------D--SETPLSEVMTPR--- 66 (114)
T ss_pred --------------------------------------------------------------c--cCCCHHHhcCCC---
Confidence 0 124588888554
Q ss_pred CceEecC--CCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVAT--DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~--~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+.++.. +.++.+++.+|.+++.+.+||+|. ++++.|+||+.++++
T Consensus 67 -~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 67 -EVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred -ceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 556655 999999999999999999999986 469999999999875
No 47
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.29 E-value=9.1e-11 Score=88.64 Aligned_cols=108 Identities=18% Similarity=0.333 Sum_probs=90.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++|+.+|.+.|.++++...||.|.+ +|+|+|...++..+ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~~l~~~-------~~---------------- 49 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDG---------KLVGIVTLSDIAHA-------IA---------------- 49 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEHHHHHHH-------Hh----------------
Confidence 56789999999999999999999999999874 89999999999874 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+....+++.+++..
T Consensus 50 --------------------------------------------------------------~~~~~~~v~~~~~~---- 63 (110)
T cd04588 50 --------------------------------------------------------------RGLELAKVKDVMTK---- 63 (110)
T ss_pred --------------------------------------------------------------ccccccCHHHHhcC----
Confidence 00011557777753
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..|.++.++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 64 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 64 DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 58999999999999999999999999999973 69999999999875
No 48
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=7.2e-11 Score=89.57 Aligned_cols=110 Identities=20% Similarity=0.376 Sum_probs=92.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
.+.+.+++++.+|.+.+.++++...||+|.+ ++++|+|+..++..-.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~--------~~~~G~v~~~dl~~~~~~----------------------- 51 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK--------KRLVGIITRYDVLSYALE----------------------- 51 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC--------CCEEEEEEHHHHHHhhhh-----------------------
Confidence 5778999999999999999999999999875 389999999999761000
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
.+.+.++++.++|...
T Consensus 52 ------------------------------------------------------------~~~~~~~~i~~~~~~~---- 67 (113)
T cd04615 52 ------------------------------------------------------------SEELKDAKVREVMNSP---- 67 (113)
T ss_pred ------------------------------------------------------------hhhhcCCcHHHhccCC----
Confidence 0223456788888654
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..++.++++.+++.+|.+++.+++||+|.+ |++.|+||+.++++
T Consensus 68 ~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 68 VITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 8889999999999999999999999999974 69999999999874
No 49
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.29 E-value=4e-11 Score=89.74 Aligned_cols=110 Identities=21% Similarity=0.323 Sum_probs=88.7
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++++.++.++|+.+|.+.|.++++...||+|.+ +++|+|+..++..++.+..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~dl~~~~~~~~------------------- 52 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG---------RVVGSIDESDLLDALIEGK------------------- 52 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeCC---------eeEEEEeHHHHHHHHhccc-------------------
Confidence 467889999999999999999999999999863 8999999999998521110
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
....+++.++|+.
T Consensus 53 ----------------------------------------------------------------~~~~~~~~~~~~~--- 65 (110)
T cd04609 53 ----------------------------------------------------------------AKFSLPVREVMGE--- 65 (110)
T ss_pred ----------------------------------------------------------------cccCcCHHHHhcC---
Confidence 0013567788854
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..++.++++.+++.+|.+ + +.+||||. ++++.|+||+++|+++
T Consensus 66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred -CCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 48889999999999999988 3 35788986 4799999999999864
No 50
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=9.6e-11 Score=88.76 Aligned_cols=110 Identities=27% Similarity=0.373 Sum_probs=92.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+...+..++++.+|.+.|.++++...||.|.+ ++|+|+|+..++..++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~~l~~~~~~---------------------- 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD--------ERPIGIVTERDIVRAVAA---------------------- 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC--------CCEEEEeeHHHHHHHHhc----------------------
Confidence 45778999999999999999999999999986 389999999999874211
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
....+++++++|..
T Consensus 52 --------------------------------------------------------------~~~~~~~v~~~~~~---- 65 (112)
T cd04624 52 --------------------------------------------------------------GIDLDTPVSEIMTR---- 65 (112)
T ss_pred --------------------------------------------------------------cCCCccCHHHhccC----
Confidence 00124568888764
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++.+|.+++.+.+||+|.. |++.|+||.+++++
T Consensus 66 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 66 DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred CCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 48999999999999999999999999999974 68999999999875
No 51
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.29 E-value=9.9e-11 Score=88.56 Aligned_cols=109 Identities=17% Similarity=0.278 Sum_probs=89.6
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++|+.+|.+.|.++++...||.|.+. ++++|+++..++..+..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~-------~~~~G~v~~~~l~~~~~~---------------------- 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL-------DNIIGVVHVKDLLRALAE---------------------- 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC-------ceEEEEEEHHHHHHHHHc----------------------
Confidence 578899999999999999999999999998752 289999999999874100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. ...+.+.++++
T Consensus 53 --------------------------------------------------------------~-~~~~~~~~~~~----- 64 (111)
T cd04590 53 --------------------------------------------------------------G-EEDLDLRDLLR----- 64 (111)
T ss_pred --------------------------------------------------------------C-CCcCCHHHHhc-----
Confidence 0 00145666653
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+..++++.+++.+|.+++.+.+||+|. +|++.|+||++++++
T Consensus 65 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 65 PPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred CCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 4678899999999999999999999999996 468999999999875
No 52
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.28 E-value=2.4e-11 Score=111.57 Aligned_cols=122 Identities=12% Similarity=0.149 Sum_probs=99.3
Q ss_pred cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh
Q 022403 43 RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 122 (297)
Q Consensus 43 ~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~ 122 (297)
.++|..+-.. ..+++.+++++|+.+|++.|.+++....||+|.+ ++++|+|+..|+..++.+
T Consensus 196 ~~~V~~im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~--------g~~iG~vt~~dl~~~~~~--------- 257 (321)
T PRK11543 196 LNKVHHLMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ--------QQVQGVFTDGDLRRWLVG--------- 257 (321)
T ss_pred HhHHHHHhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEecHHHHHHHHhC---------
Confidence 3555555443 1248999999999999999999999999999976 489999999998764210
Q ss_pred ccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc
Q 022403 123 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS 202 (297)
Q Consensus 123 ~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~ 202 (297)
+...+
T Consensus 258 ---------------------------------------------------------------------------~~~~~ 262 (321)
T PRK11543 258 ---------------------------------------------------------------------------GGALT 262 (321)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 00124
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++|+++|... +..+.+++++.+++.+|.++++.++||||.+ ++++|+||+.+|++
T Consensus 263 ~~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAMTRG----GTTLQAQSRAIDAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhcCCC----CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHh
Confidence 5699999765 8889999999999999999999999999964 59999999999985
No 53
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.28 E-value=4.6e-11 Score=90.36 Aligned_cols=111 Identities=19% Similarity=0.358 Sum_probs=91.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.+++....||.|.+ +++|+|+..+|...+++. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---------~~~G~v~~~dl~~~~~~~---~----------------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGN---------KLVGIFTSKDIALRVVAQ---G----------------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECC---------EEEEEEEhHHHHHHHHhc---C-----------------
Confidence 67889999999999999999999999999863 899999999998631110 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
. +. .++++.++|+..
T Consensus 53 -------------------------------------------------------~------~~-~~~~v~~i~~~~--- 67 (113)
T cd04587 53 -------------------------------------------------------L------DP-ESTLVERVMTPN--- 67 (113)
T ss_pred -------------------------------------------------------C------Cc-CcCCHHHhcCCC---
Confidence 0 11 135688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++.+++||+|.+ +++.|+||..++++
T Consensus 68 -~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 68 -PVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred -CeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 8889999999999999999999999999973 68999999999875
No 54
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.28 E-value=5.4e-11 Score=90.32 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=85.3
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGT 136 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a 136 (297)
-+.+++++|+.+|.+.|.++++...||+|.+ +++|+|+..++..+ .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~-------~------------------ 48 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDYN---------KFLGAVYLKDIENA-------T------------------ 48 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEECC---------EEEEEEEHHHHhhh-------c------------------
Confidence 4778999999999999999999999999863 89999998887652 0
Q ss_pred ccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCC
Q 022403 137 VGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAP 216 (297)
Q Consensus 137 ~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaP 216 (297)
..++.++|...
T Consensus 49 -----------------------------------------------------------------~~~~~~~~~~~---- 59 (104)
T cd04594 49 -----------------------------------------------------------------YGDVVDYIVRG---- 59 (104)
T ss_pred -----------------------------------------------------------------ccchhhhhhcC----
Confidence 01255666543
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..|..+.++.+++.+|.+++.+.+||+| +|++.|+||+.++++
T Consensus 60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 67899999999999999999999999998 469999999999875
No 55
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=7.3e-11 Score=89.29 Aligned_cols=111 Identities=21% Similarity=0.374 Sum_probs=90.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.+++....||+|.+ +++|+|+..++....+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~i~~~~l~~~~~~~--------------------- 51 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEND---------RLVGIVTDRDIVVRAVAE--------------------- 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC---------EEEEEEEhHHHHHHHhhc---------------------
Confidence 56889999999999999999999999999873 899999999987421100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+......+++++|...
T Consensus 52 -------------------------------------------------------------~~~~~~~~~~~~~~~~--- 67 (113)
T cd04622 52 -------------------------------------------------------------GRDPDTTTVGDVMTRG--- 67 (113)
T ss_pred -------------------------------------------------------------cCCcccCCHHHhccCC---
Confidence 0001123488888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++..|.+++.+++||+|.+ +++.|+||+.++++
T Consensus 68 -~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 68 -VVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred -ccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999975
No 56
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=1.3e-10 Score=85.12 Aligned_cols=111 Identities=22% Similarity=0.355 Sum_probs=90.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++.+.|.+++....||+|.+ ++++|+++..+|+.+........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~G~v~~~~l~~~~~~~~~~~----------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD--------GRLVGIVTERDLLRALAEGGLDP----------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC--------CCEEEEEeHHHHHHHHHhccCCc-----------------
Confidence 56789999999999999999999999999985 38999999999998632110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
...+.+++. .
T Consensus 57 ------------------------------------------------------------------~~~~~~~~~----~ 66 (113)
T cd02205 57 ------------------------------------------------------------------LVTVGDVMT----R 66 (113)
T ss_pred ------------------------------------------------------------------cccHHHHhc----C
Confidence 000445554 3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..+..++++.+++..|.+++.+.+||+|.+ +++.|+||+.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 67 DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred CceecCCCcCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 58889999999999999999999999999985 69999999999876
No 57
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.3e-10 Score=89.53 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=94.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+++++++.+|.+.|.++++...||+|.+ +++|+|+..++...+.+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~---------~~~G~v~~~~l~~~~~~~~~~~----------------- 55 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDN---------ELVGVISDRDYLKAISPFLGTA----------------- 55 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCC---------eEEEEEEHHHHHHHHHHHhccc-----------------
Confidence 56889999999999999999999999999963 8999999999987422100000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.....++. ..++++.++|...
T Consensus 56 ------------------------------------------------~~~~~~~~--------~~~~~~~~~~~~~--- 76 (122)
T cd04637 56 ------------------------------------------------GETEKDLA--------TLNRRAHQIMTRD--- 76 (122)
T ss_pred ------------------------------------------------cchHHHHH--------HHHhHHHHhhcCC---
Confidence 00000110 0145688888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++.+..++++.+++.+|.+++.+++||+|.+ ++++|+||.++++++
T Consensus 77 -~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~~ 122 (122)
T cd04637 77 -PITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLKY 122 (122)
T ss_pred -CeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhhC
Confidence 8999999999999999999999999999864 699999999999863
No 58
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.8e-10 Score=87.07 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=90.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+++|+.++.+.+.++++...||.|.+ ++++|+|+..++...+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~------~---------------- 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED--------GRLVGIVTSWDISKAV------A---------------- 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC--------CcEEEEEeHHHHHHHH------h----------------
Confidence 467889999999999999999999999999875 3899999999987620 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ ...+++++|..
T Consensus 52 ---------------------------------------------------------------~--~~~~~~~~~~~--- 63 (110)
T cd04605 52 ---------------------------------------------------------------R--DKKSVEDIMTR--- 63 (110)
T ss_pred ---------------------------------------------------------------h--CccCHHHhcCC---
Confidence 0 01236666643
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|+..+..++++.+++.+|.+++.+.+||++.+ |++.|+||+.++++
T Consensus 64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 64 -NVITATPDEPIDVAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 58899999999999999999999999999974 69999999999865
No 59
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=7.8e-11 Score=89.66 Aligned_cols=103 Identities=26% Similarity=0.400 Sum_probs=85.6
Q ss_pred ecCCCCHHHHHHHHHHCC-----CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 60 IMADTTIPDAVKILSECN-----ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 60 I~~d~sI~dAvkiLse~n-----IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+++++|+.++.+.|.+++ +...||+|.+ ++|+|+|+..++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~--------~~~~G~v~~~~l~~--------~---------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE--------GRLLGVVSLRDLLL--------A---------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC--------CCEEEEEEHHHHhc--------C----------------
Confidence 578999999999999888 5678999875 38999999877754 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. .+++++++++..
T Consensus 50 ---------------------------------------------------------------~--~~~~v~~~~~~~-- 62 (109)
T cd04606 50 ---------------------------------------------------------------D--PDTPVSDIMDTD-- 62 (109)
T ss_pred ---------------------------------------------------------------C--CcchHHHHhCCC--
Confidence 0 134577777554
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+..+.++.++.+++.+|.+++.+.+||+|.+ +++.|+||.+++++.|
T Consensus 63 --~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~~ 109 (109)
T cd04606 63 --VISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDVI 109 (109)
T ss_pred --CeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhhC
Confidence 8899999999999999999999999999964 6999999999999864
No 60
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.25 E-value=4.9e-11 Score=106.15 Aligned_cols=115 Identities=25% Similarity=0.393 Sum_probs=97.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
.++||.+++|++|.+++++|.++||+--||++.+ +.+|=|+-.+|+.-.|+.-
T Consensus 72 ~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~---------k~VGsItE~~iv~~~le~~------------------ 124 (187)
T COG3620 72 HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEED---------KVVGSITENDIVRALLEGM------------------ 124 (187)
T ss_pred cCCeeEECchhhHHHHHHHHHHcCCccCceeeCC---------eeeeeecHHHHHHHHhccc------------------
Confidence 6899999999999999999999999999999997 8999999999999322221
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
|...+-+|++||+.-
T Consensus 125 ----------------------------------------------------------------e~i~~~~vr~vM~e~- 139 (187)
T COG3620 125 ----------------------------------------------------------------ESIRSLRVREVMGEP- 139 (187)
T ss_pred ----------------------------------------------------------------cchhhhhHHHHhcCC-
Confidence 333567899999876
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|-.|++|.++.-+-.||..| ..|-|++ +|+++||||+.||++.+.+.
T Consensus 140 ---fP~Vs~~~~l~vI~~LL~~~--~AVlV~e--~G~~vGIITk~DI~k~~~~~ 186 (187)
T COG3620 140 ---FPTVSPDESLNVISQLLEEH--PAVLVVE--NGKVVGIITKADIMKLLAGT 186 (187)
T ss_pred ---CCcCCCCCCHHHHHHHHhhC--CeEEEEe--CCceEEEEeHHHHHHHHhcc
Confidence 99999999998888888554 4677887 67999999999999998764
No 61
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.25 E-value=9.8e-11 Score=87.92 Aligned_cols=106 Identities=21% Similarity=0.371 Sum_probs=87.3
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.++.++++.++.+.|.++++.+.||.|.+ ++++|+|+..+|.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~--------~~---------------- 50 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD--------GKLVGIVTNRDLRF--------ET---------------- 50 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC--------CEEEEEEEhhHeee--------cc----------------
Confidence 56889999999999999999999999999875 38999999877743 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+ .++++.++|...
T Consensus 51 --------------------------------------------------------------~--~~~~v~~~~~~~--- 63 (110)
T cd04601 51 --------------------------------------------------------------D--LDKPVSEVMTPE--- 63 (110)
T ss_pred --------------------------------------------------------------c--CCCCHHHhcccC---
Confidence 0 134577887653
Q ss_pred CceEecC-CCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~-~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.. ++++.+++.+|.+++.+.+||+|. ++++.|+||++++++
T Consensus 64 -~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 64 -NLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred -ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 455666 999999999999999999999996 469999999999875
No 62
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.25 E-value=1.7e-10 Score=87.19 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=91.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..+++++++.++.+.|.++++...||.|.+ ++++|+|...+|...+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~--------~~~~G~v~~~~i~~~~~~~--------------------- 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED--------GRLVGIFTDGDLRRALEKG--------------------- 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC--------CCEEEEechHHHHHHHhcc---------------------
Confidence 55678999999999999998889999999976 3899999988887731100
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
..+..+++.++|...
T Consensus 54 --------------------------------------------------------------~~~~~~~v~~~~~~~--- 68 (114)
T cd04604 54 --------------------------------------------------------------LDILTLPVADVMTRN--- 68 (114)
T ss_pred --------------------------------------------------------------CccccCCHHHhhccC---
Confidence 112335688888765
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.+++++.+++.+|.+++...+||+|.+ +++.|+||..++++
T Consensus 69 -~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 69 -PKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 7789999999999999999999999999974 69999999999975
No 63
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.5e-10 Score=87.96 Aligned_cols=105 Identities=16% Similarity=0.213 Sum_probs=88.8
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+.+++++.+|.+.+.+++....||.|.+ ++++|+|...++.. ..
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~--------~~---------------- 50 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK--------NKVVGIVTSKDVAG--------KD---------------- 50 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC--------CeEEEEecHHHHhc--------cc----------------
Confidence 57889999999999999999999999999865 48999998887753 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+.+++++|...
T Consensus 51 -----------------------------------------------------------------~~~~v~~~~~~~--- 62 (108)
T cd04596 51 -----------------------------------------------------------------PDTTIEKVMTKN--- 62 (108)
T ss_pred -----------------------------------------------------------------ccccHHHHhcCC---
Confidence 123477777543
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+++++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++
T Consensus 63 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 63 -PITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred -CeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 7889999999999999999999999999964 69999999999875
No 64
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.21 E-value=3.9e-10 Score=84.75 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=89.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+++++++.++++.|.++++...||+|.+ +++|+++..+|.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~G~v~~~dl~~~~------~~---------------- 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG---------RLVGIVTLADIRRVP------AE---------------- 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCC---------eEEEEEEHHHHHHHH------hc----------------
Confidence 46789999999999999999999999999874 899999999987620 00
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
......++.++|...
T Consensus 51 --------------------------------------------------------------~~~~~~~~~~~~~~~--- 65 (111)
T cd04612 51 --------------------------------------------------------------GREATVLVGDVMTRD--- 65 (111)
T ss_pred --------------------------------------------------------------CcccccCHHHhccCC---
Confidence 000014567777543
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|. ++++.|+||..+|++
T Consensus 66 -~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 66 -PVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred -CeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 899999999999999999999999999997 469999999999975
No 65
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.21 E-value=2.8e-10 Score=85.42 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=86.2
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+.+.+..++++.+|++.|.++++...||.|.+ ++++|+++..+|... .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~--------g~~~Giv~~~dl~~~--------~---------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD--------GQPLGFVTRREAARA--------S---------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC--------CCEEEEEeHHHHHHh--------c----------------
Confidence 45788999999999999999999999999865 389999999888751 0
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.+.+.++|..
T Consensus 50 ------------------------------------------------------------------~~~~~~~~~~---- 59 (106)
T cd04582 50 ------------------------------------------------------------------GGCCGDHAEP---- 59 (106)
T ss_pred ------------------------------------------------------------------ccchhhhccc----
Confidence 0114455533
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
++..+..++++.+++.+|.+++...+||+|.+ +++.|+||+++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 60 FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIADY 106 (106)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhcC
Confidence 25678999999999999999999999999974 689999999999863
No 66
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.20 E-value=2.1e-10 Score=114.31 Aligned_cols=129 Identities=14% Similarity=0.198 Sum_probs=107.6
Q ss_pred HHHHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 34 QETLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 34 ~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
.+...+.+..+++..+- ..+++.+.+++|+.+|.++|.++++.+.||+|.+ ++++|||+..|+..
T Consensus 79 ~~~q~~~l~~VKv~~iM---i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~--------gklvGIVT~rDL~~---- 143 (479)
T PRK07807 79 IDVVAEVVAWVKSRDLV---FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE--------GRPVGVVTEADCAG---- 143 (479)
T ss_pred HHHHHHHHhhccccccc---ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC--------CeEEEEEeHHHHhc----
Confidence 45566677788886553 3578899999999999999999999999999965 38999999888622
Q ss_pred HHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHH
Q 022403 114 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 193 (297)
Q Consensus 114 ~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~ 193 (297)
.
T Consensus 144 ----~--------------------------------------------------------------------------- 144 (479)
T PRK07807 144 ----V--------------------------------------------------------------------------- 144 (479)
T ss_pred ----C---------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 194 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 194 L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+++|+++|+.. ++++.++.++.+++.+|.+++++.+||||.+ ++++|+||+++|++.+...
T Consensus 145 ----~--~~~~V~diMt~~----~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 145 ----D--RFTQVRDVMSTD----LVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ----c--cCCCHHHhccCC----ceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC
Confidence 0 125699999764 9999999999999999999999999999974 5999999999999977654
No 67
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=3.8e-10 Score=84.58 Aligned_cols=105 Identities=18% Similarity=0.343 Sum_probs=88.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.++.++++.++++.+.+++....||.|.+ +|+|++...+|.. ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~---------~~~g~v~~~~l~~--------~~--------------- 49 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNG---------KVVGIVSARDLLG--------KD--------------- 49 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECC---------EEEEEEEHHHhhc--------cC---------------
Confidence 467889999999999999999998899999863 8999999888754 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.+.+++++|...
T Consensus 50 ------------------------------------------------------------------~~~~~~~~~~~~-- 61 (107)
T cd04610 50 ------------------------------------------------------------------PDETVEEIMSKD-- 61 (107)
T ss_pred ------------------------------------------------------------------ccccHHHhCCCC--
Confidence 123477887554
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+++||+|.+ |++.|+||..++++
T Consensus 62 --~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 62 --LVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred --CeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 7888999999999999999999999999974 69999999999985
No 68
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.18 E-value=3.2e-10 Score=112.36 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=118.1
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhh-ccc-------
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF-SVG------- 125 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~-~~~------- 125 (297)
..+++.+++++++.+|.++|.++++...||+|.+ ++++|+|+..||..+.++..+...-+. .++
T Consensus 75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~ 146 (546)
T PRK14869 75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRT 146 (546)
T ss_pred CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHh
Confidence 3578999999999999999999999999999976 389999999999999887653211000 000
Q ss_pred --------cccccc--cccccccchhh---hhhccCCcchhhhhhH----Hhhhhh-----hhccchhccc-CC--CCCc
Q 022403 126 --------TATAAG--VGTGTVGALGA---LALGMTGPAAVAGLTV----AAAGAA-----VAGGLAAEKG-AG--KDAP 180 (297)
Q Consensus 126 --------~~~a~g--~g~~a~~~~~a---~al~~~~P~~~~~~~~----~a~~aa-----~~~~~~~d~~-~~--~~~~ 180 (297)
... .. .|.-.+|+... ......|...+.|-.. +|+-+- +.||.-.+.. ++ +...
T Consensus 147 L~~~~l~~~~~-~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~ 225 (546)
T PRK14869 147 LDGEVLVGAEE-DKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENG 225 (546)
T ss_pred cCcEEEecCcc-cccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCC
Confidence 000 00 11111111110 0001111111111111 111111 1122221100 00 0000
Q ss_pred chhhhhhhhHHHHhhhcCCCCccchhhHhh-hccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHH
Q 022403 181 TAADRLHEDFYKVILQEEPFKSTTVRSIIK-SYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 259 (297)
Q Consensus 181 ~~~~~~~~df~~~L~~~e~~k~tkV~dI~~-s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSa 259 (297)
.+.=....|.|+.... ...+++|+++|+ .. ++.+++++++.++..+|.+++.+++||||.+ |+++|+||..+
T Consensus 226 i~ii~t~~dt~~t~~~--l~~~~~V~~iM~~~~----~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~d 298 (546)
T PRK14869 226 VTVISTPYDTFTTARL--INQSIPVSYIMTTED----LVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-GKVVGVISRYH 298 (546)
T ss_pred CeEEEecccHHHHHHH--hhcCCCHHHhccCCC----cEEECCCCcHHHHHHHHHhcCCCceEEEcCC-CCEEEEEEHHH
Confidence 1111122345555433 346889999998 55 8999999999999999999999999999974 69999999999
Q ss_pred HHHHHh
Q 022403 260 VVQGLE 265 (297)
Q Consensus 260 VI~~L~ 265 (297)
+++...
T Consensus 299 l~~~~~ 304 (546)
T PRK14869 299 LLSPVR 304 (546)
T ss_pred hhcccc
Confidence 998654
No 69
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=3.6e-10 Score=91.55 Aligned_cols=142 Identities=23% Similarity=0.334 Sum_probs=96.7
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.++.++++.++++.|.++++.+.||+|.+ +++|+|+..++..++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~---------~~~G~v~~~dl~~~~~~~~~~~~---------------- 56 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGG---------KLVGIVSESDILKLLVTHDPSGN---------------- 56 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECC---------eEEEEecHHHHHHHHHhccCccc----------------
Confidence 56889999999999999999999999999862 89999999999775432210000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+..+... .+ .+. +........++.... +....+++.++|...
T Consensus 57 ---------~~~~~~~-------------------~~--~~~--~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~--- 98 (143)
T cd04634 57 ---------LWLPSPL-------------------EL--IEL--PLREFINWEETKRAL---TDAGKMKVRDIMTKK--- 98 (143)
T ss_pred ---------cccCCcc-------------------ee--eec--cchheeehHHHHHHH---HHHhcCCHHHHcCCC---
Confidence 0000000 00 000 000000011111111 112456788888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+..+..++++.+++.+|.+++.+++||+|. +++.|+||+++++++
T Consensus 99 -~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~~ 143 (143)
T cd04634 99 -VITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIEG 143 (143)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhcC
Confidence 889999999999999999999999999996 689999999999863
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.15 E-value=3.1e-10 Score=111.01 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=101.0
Q ss_pred CCCcEEecCCCCHHHHHHHHHH-----CCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSE-----CNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTAT 128 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse-----~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~ 128 (297)
..+++.++.++|+.+|++.+.+ +++...||+|.+ ++++|+|+..|++. +.
T Consensus 138 t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~--------~~l~GvV~l~dLl~--------a~--------- 192 (449)
T TIGR00400 138 TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES--------KHLKGVLSIRDLIL--------AK--------- 192 (449)
T ss_pred cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC--------CeEEEEEEHHHHhc--------CC---------
Confidence 4678999999999999999976 678888998875 38999999888765 10
Q ss_pred ccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH
Q 022403 129 AAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI 208 (297)
Q Consensus 129 a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI 208 (297)
.+++|+++
T Consensus 193 ------------------------------------------------------------------------~~~~v~~i 200 (449)
T TIGR00400 193 ------------------------------------------------------------------------PEEILSSI 200 (449)
T ss_pred ------------------------------------------------------------------------CCCcHHHH
Confidence 13469999
Q ss_pred hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhh
Q 022403 209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD 274 (297)
Q Consensus 209 ~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~ 274 (297)
|+.. ++.+.+++++.+++.+|.+|+++.+||||.+ |+++|+||..++++.+.+....|.+.
T Consensus 201 m~~~----~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~~~ed~~~ 261 (449)
T TIGR00400 201 MRSS----VFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSEATEDFYM 261 (449)
T ss_pred hCCC----CeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhhhHHHHHH
Confidence 9775 8889999999999999999999999999974 69999999999999998877665544
No 71
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.14 E-value=5.1e-10 Score=112.17 Aligned_cols=116 Identities=11% Similarity=0.125 Sum_probs=98.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+.+|+|+.||.++|.++++.+.||+|.+. +.++++|+|+..||.. .
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-----~~GklvGIVT~~DL~~--------v---------------- 158 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT-----MGSKLLGYVTKRDWDF--------V---------------- 158 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-----cCCeEEEEEEHHHHhh--------c----------------
Confidence 5678999999999999999999999999998631 1248999999988854 1
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. ..+++|.++|+..
T Consensus 159 ---------------------------------------------------------------~-~~~~~V~eIMt~~-- 172 (505)
T PLN02274 159 ---------------------------------------------------------------N-DRETKLSEVMTSD-- 172 (505)
T ss_pred ---------------------------------------------------------------c-ccCCcHHHHhccC--
Confidence 0 1257799999642
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+++.+.+++++.+++.+|.+++++++||||. +++++|+||++++++.+.-
T Consensus 173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence 23789999999999999999999999999987 4699999999999999975
No 72
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.13 E-value=3.3e-10 Score=113.58 Aligned_cols=112 Identities=12% Similarity=0.202 Sum_probs=93.4
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
..+.+++|+.||+++|.++++.+.||+|... ..++++|||+..||.. ..
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~-----~~gkLvGIVT~~DLr~--------~~------------------ 156 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGT-----AHGKLLGIVTSRDYRI--------SR------------------ 156 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-----cCCEEEEEEEcHHhhc--------cc------------------
Confidence 5899999999999999999999999999621 1248999999988853 10
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
...+++|++||+.. .++
T Consensus 157 -------------------------------------------------------------~~~~~~V~dIMt~~--~~~ 173 (502)
T PRK07107 157 -------------------------------------------------------------MSLDTKVKDFMTPF--EKL 173 (502)
T ss_pred -------------------------------------------------------------cCCCCCHHHHhCCC--CCe
Confidence 01346799999742 248
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+.++++.++.+++.+|.+|++++|||||. +++++|+||..++++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhcc
Confidence 89999999999999999999999999996 46899999999999864
No 73
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.11 E-value=2e-09 Score=82.30 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=92.4
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
++..++.++++.+|++.|.+++....||+|.+ ++++|+|...++....-....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~--------~~~~G~v~~~~l~~~~~~~~~------------------- 54 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE--------GRLVGIVTDRDLRDASPSPFT------------------- 54 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC--------CcEEEEEEHHHHHHHhhhhcc-------------------
Confidence 56789999999999999999999999999985 389999999998763110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
.++-..+ ......+++++|...
T Consensus 55 ----------------------------------------------------~~~~~~~---~~~~~~~v~~~~~~~--- 76 (121)
T cd04584 55 ----------------------------------------------------TLSEHEL---YLLLKMPVKEIMTKD--- 76 (121)
T ss_pred ----------------------------------------------------cchhhhh---hhhcCcCHHHHhhCC---
Confidence 0000000 112346688888654
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|..++...+||+|. +++.|++|..++++
T Consensus 77 -~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 77 -VITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred -CeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 788999999999999999999999999985 68999999999875
No 74
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.11 E-value=6.3e-10 Score=107.00 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=101.6
Q ss_pred HHHHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 36 TLTAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 36 ~Ln~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
.+-..+..++|..+-. .+++.+.+++|+.+|++.|.++++...||+|.+ ++++|+|+..||..++.+.
T Consensus 327 ~~~~~l~~~~v~~im~---~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--------~~~~Givt~~dl~~~~~~~- 394 (454)
T TIGR01137 327 TVFDVLKNATVKDLHL---PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA--------GKVLGSVTLRELLSALFAG- 394 (454)
T ss_pred cHHHHhccCCHHHhCc---CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHHhcc-
Confidence 3566699999988764 368999999999999999999999999999875 3899999999998742210
Q ss_pred HHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhh
Q 022403 116 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL 195 (297)
Q Consensus 116 e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~ 195 (297)
T Consensus 395 -------------------------------------------------------------------------------- 394 (454)
T TIGR01137 395 -------------------------------------------------------------------------------- 394 (454)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 196 QEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 196 ~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
+...+++|.++|... +..|.+++++.+++.+|.+++ +|||+. ++++.|+||++++++.|
T Consensus 395 --~~~~~~~v~~im~~~----~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 395 --KANPDDAVSKVMSKK----FIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --CCCcCCCHHHhcCCC----CeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 001235789999643 889999999999999998864 355544 46999999999999986
No 75
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.08 E-value=4.3e-10 Score=114.47 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=107.6
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+.+++.+.+||.+|.+.|.++|+.|--|+|++. ..+|||+-.|+..-++-
T Consensus 156 ~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~--------~~~GIvT~~dl~~~v~~-------------------- 207 (610)
T COG2905 156 TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSG--------PLLGIVTRKDLRSRVIA-------------------- 207 (610)
T ss_pred cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCC--------CccceeehHHHHHHHHh--------------------
Confidence 45668999999999999999999999777788763 68999999888873211
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
| ..-+.+||.++|++-
T Consensus 208 --------------------------------------~-------------------------g~~~~~~V~evmT~p- 223 (610)
T COG2905 208 --------------------------------------D-------------------------GRSKTQKVSEVMTSP- 223 (610)
T ss_pred --------------------------------------c-------------------------CCCcccchhhhhccC-
Confidence 1 112578999999987
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhcccccccc
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL 284 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~~K~lsel 284 (297)
.+.|+..+-+++||++|+++|||+|||.+ +|++.||||-++|++.+.++.=.--.+..-.++|.||
T Consensus 224 ---~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~~~~vl~~~i~~a~sI~el 289 (610)
T COG2905 224 ---VISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQNSIVLVKRIARASSIEEL 289 (610)
T ss_pred ---ceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCCCceeehHHhhhhhhHHHH
Confidence 99999999999999999999999999999 5689999999999999987654323333333444444
No 76
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.07 E-value=1.7e-09 Score=107.76 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=101.6
Q ss_pred HHHhhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHH
Q 022403 38 TAAFARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL 117 (297)
Q Consensus 38 n~~fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~ 117 (297)
.+....+++..+- ..+.+.+.+++|+.+|.++|.++++.+.||+|.+ +++|||+-.|+..
T Consensus 82 ae~v~~VKv~eim---~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~g---------klvGIVT~rDL~~-------- 141 (475)
T TIGR01303 82 KQTVAFVKSRDLV---LDTPITLAPHDTVSDAMALIHKRAHGAAVVILED---------RPVGLVTDSDLLG-------- 141 (475)
T ss_pred HHHHhhcchhhcc---ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECC---------EEEEEEEHHHhhc--------
Confidence 3345566666442 3467899999999999999999999999998853 8999999888621
Q ss_pred HHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhc
Q 022403 118 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE 197 (297)
Q Consensus 118 a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~ 197 (297)
.
T Consensus 142 ~------------------------------------------------------------------------------- 142 (475)
T TIGR01303 142 V------------------------------------------------------------------------------- 142 (475)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+++|+++|+.. ++++.+++++.+++.+|.+|+++.+||||. +++++|+||+.++++.....
T Consensus 143 ~--~~~~V~dIMt~~----litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 143 D--RFTQVRDIMSTD----LVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred C--CCCCHHHHccCC----ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC
Confidence 0 125699999754 999999999999999999999999999996 46899999999999977655
No 77
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.05 E-value=1.5e-09 Score=89.08 Aligned_cols=114 Identities=13% Similarity=0.219 Sum_probs=81.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
.++.+.+++++.+|++.|.++++.+.||+|.+ ++++|+|+..|+..++........
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~--------g~l~Givt~~Dl~~~~~~~~~~~~---------------- 57 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD--------DFLEGILTLGDIQRFLFTNKTTRV---------------- 57 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHHHHHHhhcccccc----------------
Confidence 46889999999999999999999999999986 389999999999986422110000
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhh----
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKS---- 211 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s---- 211 (297)
....+.+ .-+...+.++|..
T Consensus 58 -------------------------------------------------~~~~~~~-------~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 58 -------------------------------------------------QPEDETK-------QTNTCLVSSVCTKGISY 81 (133)
T ss_pred -------------------------------------------------ccchhhc-------ccccccHHHHhhhhhhh
Confidence 0000000 0011234445532
Q ss_pred -ccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC
Q 022403 212 -YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP 249 (297)
Q Consensus 212 -~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~ 249 (297)
..-.|++.+.+++++.+++.+|.+|+++++||+|.+++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~ 120 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVD 120 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcC
Confidence 11245889999999999999999999999999997653
No 78
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.05 E-value=1.8e-09 Score=106.05 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=97.0
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+++.+.+++|+.||.++|.++++...||+|.+.. .++++|+|+..|+.. ..
T Consensus 87 ~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~-----~~~lvGIVt~rDL~~--------~~-------------- 139 (450)
T TIGR01302 87 ISDPVTISPETTVADVLELMERKGISGIPVVEDGDM-----TGKLVGIITKRDIRF--------VK-------------- 139 (450)
T ss_pred ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC-----CCeEEEEEEHHHHhh--------hh--------------
Confidence 357899999999999999999999999999997521 138999999888753 10
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
+ .+++|+++|+.
T Consensus 140 ----------------------------------------------------------------~--~~~~V~dvm~~-- 151 (450)
T TIGR01302 140 ----------------------------------------------------------------D--KGKPVSEVMTR-- 151 (450)
T ss_pred ----------------------------------------------------------------c--CCCCHHHhhCC--
Confidence 0 13568899863
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+++.+..+.++.+++.+|.+++.+.+||||. +|++.|+||..+|++.+.
T Consensus 152 -~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 152 -EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK 201 (450)
T ss_pred -CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence 36889999999999999999999999999997 469999999999999875
No 79
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.05 E-value=3.3e-09 Score=82.00 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=85.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.++..+.+++++.++.+.+.+++....||+|... -.++|+|+|+..++..+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-----~~~~~~G~v~~~dl~~~-------~---------------- 53 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-----ESPRLVGYILRSQLVVA-------L---------------- 53 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCC-----CCCEEEEEEeHHHHHHH-------H----------------
Confidence 3678889999999999999999999999998730 00389999999888762 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
. + +|..
T Consensus 54 --------------------------------------------------------~------~---------~m~~--- 59 (105)
T cd04591 54 --------------------------------------------------------K------N---------YIDP--- 59 (105)
T ss_pred --------------------------------------------------------H------H---------hccC---
Confidence 0 0 4433
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++..++.++++.+++.+|.+++.+.+||++ +|++.|+||..++++
T Consensus 60 -~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 60 -SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK 104 (105)
T ss_pred -CCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence 478899999999999999999999999997 568999999999976
No 80
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.04 E-value=1.4e-09 Score=108.65 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=96.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+.+.+.+++|+.+|.+++.++++.+.||+|.+. +.++++|||+..||.. ..
T Consensus 104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-----~~gkLvGIVt~~DL~~--------~~--------------- 155 (495)
T PTZ00314 104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK-----VGGKLLGIVTSRDIDF--------VK--------------- 155 (495)
T ss_pred cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-----cCCeEEEEEEHHHHhh--------cc---------------
Confidence 4568999999999999999999999999998741 1248999999988754 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
..+++|+++|+..
T Consensus 156 -----------------------------------------------------------------~~~~~V~diMt~~-- 168 (495)
T PTZ00314 156 -----------------------------------------------------------------DKSTPVSEVMTPR-- 168 (495)
T ss_pred -----------------------------------------------------------------cCCCCHHHhhCCc--
Confidence 0256799999752
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+++.+.++.++.+++.+|.+++++.+||||.+ +++.|+||++++++...
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRG 218 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhccc
Confidence 358999999999999999999999999999974 69999999999998754
No 81
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=2.6e-09 Score=81.71 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=88.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCC-CcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECN-ILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~n-IlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
++..+++++++.+|++.+.+++ +...||+|.. +++|+|...++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~---------~~~G~v~~~~l~~~~~~~-------------------- 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDG---------RPVGLIMREALMELLSTP-------------------- 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECC---------eeEEEEEHHHHHHHHhch--------------------
Confidence 4556889999999999998887 8999999982 899999999987631100
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
... +.+.+++|+++|...
T Consensus 53 ---------------------------------------------------~~~---------~~~~~~~v~~~~~~~-- 70 (119)
T cd04598 53 ---------------------------------------------------YGR---------ALYGKKPVSEVMDPD-- 70 (119)
T ss_pred ---------------------------------------------------hhH---------HHHcCCcHHHhcCCC--
Confidence 000 113456799999664
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCc---eeEEEcCCCCCeeEEeehHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLR---NVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~---rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+.++.++.+++.+|.+++.+ ..|||+. +|++.|+||+.++++
T Consensus 71 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 71 --PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred --cEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 89999999999999999999865 4468876 479999999999875
No 82
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.02 E-value=2.7e-09 Score=95.13 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=92.4
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhc
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS 123 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~ 123 (297)
++|..+-.. .++..+++++++.+|.+.|.++++...||+|.+ ++++|+|+..||..+...
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~--------g~~~Givt~~dl~~~~~~---------- 214 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN--------NQLVGVFTDGDLRRALLG---------- 214 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC--------CCEEEEEEcHHHHHHHhc----------
Confidence 566555442 127889999999999999999999999999976 389999999999874100
Q ss_pred cccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCcc
Q 022403 124 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST 203 (297)
Q Consensus 124 ~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~t 203 (297)
+...++
T Consensus 215 --------------------------------------------------------------------------~~~~~~ 220 (268)
T TIGR00393 215 --------------------------------------------------------------------------GGSLKS 220 (268)
T ss_pred --------------------------------------------------------------------------CCcccC
Confidence 001346
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEee
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYIT 256 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niIT 256 (297)
+|+++|... +.+|.+++++.+++.+|.+++.+++||+|.+ |++.|+|+
T Consensus 221 ~v~~im~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~GvI~ 268 (268)
T TIGR00393 221 EVRDFMTLG----PKTFKLDALLLEALEFLERRKITSLVVVDDH-NKVLGVLH 268 (268)
T ss_pred cHHHhCCCC----CeEECCCCcHHHHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence 799998655 8899999999999999999999999999964 59999985
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.01 E-value=3.3e-09 Score=105.09 Aligned_cols=111 Identities=19% Similarity=0.379 Sum_probs=95.5
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+++.+..++|+.++.++|.++++...||+|.+ ++++|+|+..||.. ..
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~--------g~lvGiVt~~DL~~--------~~--------------- 143 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVDEN--------GKLVGIITNRDVRF--------ET--------------- 143 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC--------CEEEEEEEHHHhhh--------cc---------------
Confidence 578999999999999999999999999999964 48999999998843 10
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
+ .+++|+++|+.
T Consensus 144 ---------------------------------------------------------------~--~~~~V~dim~~--- 155 (486)
T PRK05567 144 ---------------------------------------------------------------D--LSQPVSEVMTK--- 155 (486)
T ss_pred ---------------------------------------------------------------c--CCCcHHHHcCC---
Confidence 0 13468888861
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.|++.+..+.++.+++.+|.+++++.+||+|.. |++.|+||..++++.+.
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEE 205 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhh
Confidence 258899999999999999999999999999974 69999999999998874
No 84
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.00 E-value=4.5e-09 Score=98.24 Aligned_cols=133 Identities=14% Similarity=0.219 Sum_probs=104.8
Q ss_pred HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHH
Q 022403 37 LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLET 114 (297)
Q Consensus 37 Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~ 114 (297)
+... |....|..+-. |..+++.++.++|+.++.+.+.+++....||++.+- |+++|+|...|+..+.
T Consensus 58 i~~vl~l~~~~V~diMt-pr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~-------d~iiGiv~~kDll~~~--- 126 (292)
T PRK15094 58 LEGVMDIADQRVRDIMI-PRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK-------DHIEGILMAKDLLPFM--- 126 (292)
T ss_pred HHHHhccCCCEEeEEcc-chHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC-------CcEEEEEEHHHHHhHh---
Confidence 5544 45567776654 245899999999999999999999999999998652 4899999999998621
Q ss_pred HHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHh
Q 022403 115 AELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVI 194 (297)
Q Consensus 115 ~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L 194 (297)
..
T Consensus 127 ---~~--------------------------------------------------------------------------- 128 (292)
T PRK15094 127 ---RS--------------------------------------------------------------------------- 128 (292)
T ss_pred ---hc---------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 195 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 195 ~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.....+++++|+. | +.|..+.++.++|..|.+++.+.+||||. .|.+.||||..+|++.|.+-.
T Consensus 129 ----~~~~~~l~~l~r~----~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivGei 192 (292)
T PRK15094 129 ----DAEAFSMDKVLRQ----A-VVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVGEI 192 (292)
T ss_pred ----cCCcCCHHHHcCC----C-cCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhCCC
Confidence 0011236777742 3 36889999999999999999999999997 357999999999999998754
No 85
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=1e-08 Score=77.39 Aligned_cols=104 Identities=17% Similarity=0.322 Sum_probs=85.9
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccc
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTG 135 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~ 135 (297)
+++.+..++++.++.+.+.++++...||+|.+ ++++|+++-.++.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~v~~~~l~~--------~~---------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS--------GELVGIITRKDLLR--------NP---------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHh--------cc----------------
Confidence 67889999999999999999999999999875 38999999877754 10
Q ss_pred cccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCC
Q 022403 136 TVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWA 215 (297)
Q Consensus 136 a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwa 215 (297)
+++++.++|...
T Consensus 50 -----------------------------------------------------------------~~~~~~~~~~~~--- 61 (106)
T cd04638 50 -----------------------------------------------------------------EEEQLALLMTRD--- 61 (106)
T ss_pred -----------------------------------------------------------------ccchHHHHhcCC---
Confidence 012355666443
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
+..+..++++.+++.+|.+++.+.+||+|. +++.|+||+.++++
T Consensus 62 -~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 62 -PPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred -CceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 788899999999999999999999999994 58999999999875
No 86
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.90 E-value=5.8e-09 Score=72.62 Aligned_cols=56 Identities=23% Similarity=0.458 Sum_probs=52.0
Q ss_pred hhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 205 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 205 V~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|+++|.. |++.+.+++++.+++.+|.+++.+++||+|.+ |+++|+||++++++.|.
T Consensus 1 v~~~m~~----~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP----PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS----SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC----CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence 6788887 59999999999999999999999999999875 79999999999999886
No 87
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.89 E-value=2e-08 Score=97.65 Aligned_cols=132 Identities=10% Similarity=0.149 Sum_probs=106.4
Q ss_pred HHHHHHhh--cCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 35 ETLTAAFA--RIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 35 e~Ln~~fa--~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
+-++..|+ ..+|..+-. |..+++.++.++|+.|+.+.+.+++...-||++.+ .|+++|||...|++.+.
T Consensus 180 ~~i~~vl~l~~~~v~diMt-pr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~-------~d~ivGiv~~kDll~~~- 250 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMR-PRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET-------IDNITGVLYIKDLLPHL- 250 (408)
T ss_pred HHHHHHhccCCCEeeeeCC-chHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC-------CCceEEEEEHHHHHhHh-
Confidence 34666654 777776654 45689999999999999999999999999999865 35899999999987520
Q ss_pred HHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHH
Q 022403 113 ETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYK 192 (297)
Q Consensus 113 e~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~ 192 (297)
.
T Consensus 251 -----~-------------------------------------------------------------------------- 251 (408)
T TIGR03520 251 -----N-------------------------------------------------------------------------- 251 (408)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 193 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 193 ~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+ .+.+++++++ |.+.|..+.++.+++..|.+++.|..+|+|. .|.++||||..||++.+.+-
T Consensus 252 -----~--~~~~l~~~~~-----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivge 313 (408)
T TIGR03520 252 -----K--KNFDWQSLLR-----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVGD 313 (408)
T ss_pred -----c--CCCCHHHHcC-----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhCC
Confidence 0 1123566664 3578889999999999999999999999997 46899999999999999654
No 88
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.74 E-value=7.8e-08 Score=93.67 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=99.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
+.++.|..++++.+|+++|.+++|.+.||+|... +.+|.++..|+..- + .
T Consensus 237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g--------~~v~~~s~~Dv~~l-------~-~-------------- 286 (381)
T KOG1764|consen 237 SNIASISEDTPVIEALKIMSERRISALPVVDENG--------KKVGNYSRFDVIHL-------A-R-------------- 286 (381)
T ss_pred hhheeecCCCcHHHHHHHHHhcCcCcceEEcCCC--------ceecceehhhhhhh-------h-h--------------
Confidence 3689999999999999999999999999999873 56999999999882 1 0
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCc-cchhhHhhhcc
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKS-TTVRSIIKSYR 213 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~-tkV~dI~~s~r 213 (297)
.+. |. ..... -+...-...-+
T Consensus 287 -------------~~~----------------------------------------~~-----~~~~~~l~~~~~~~~~~ 308 (381)
T KOG1764|consen 287 -------------EGT----------------------------------------YN-----NLDLSCLSEALSHRPIR 308 (381)
T ss_pred -------------cCc----------------------------------------cC-----ccchhHHHHHhhhcccc
Confidence 000 00 00011 11122234556
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++.+.+.+++||..++.-|..+|+||+.|||. +|.++|+||-++|+++|..+..
T Consensus 309 ~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~~p~ 363 (381)
T KOG1764|consen 309 FEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVLTPS 363 (381)
T ss_pred cCccEEEeecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHhCcc
Confidence 677999999999999999999999999999998 4699999999999999988753
No 89
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.49 E-value=6.6e-07 Score=89.39 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=104.4
Q ss_pred CCCcEEecCCCCHHHHHHHHHHC-----CCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSEC-----NILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTAT 128 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~-----nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~ 128 (297)
..+.++++.+.|+.+|+..+.+. .+.-.-|+|.+ +|++|+|++.+++. +.
T Consensus 139 t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~--------~~L~Gvvsl~~Ll~--------a~--------- 193 (451)
T COG2239 139 TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK--------GKLLGVVSLRDLLT--------AE--------- 193 (451)
T ss_pred eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc--------cceEEEeeHHHHhc--------CC---------
Confidence 66889999999999999999853 45666777776 47999999999987 31
Q ss_pred ccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhH
Q 022403 129 AAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSI 208 (297)
Q Consensus 129 a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI 208 (297)
-+.+|+++
T Consensus 194 ------------------------------------------------------------------------~~~~i~~i 201 (451)
T COG2239 194 ------------------------------------------------------------------------PDELLKDL 201 (451)
T ss_pred ------------------------------------------------------------------------cHhHHHHH
Confidence 24679999
Q ss_pred hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchhhhhc
Q 022403 209 IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 277 (297)
Q Consensus 209 ~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf~~i~ 277 (297)
|... ++.|.++++-.++..++.||++-.+||||.+ ++++|+||+.+||.-+.+-...|-...-|
T Consensus 202 m~~~----~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 202 MEDD----VVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred hccc----ceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 9888 9999999999999999999999999999985 69999999999999999888776555444
No 90
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.42 E-value=6.9e-07 Score=62.11 Aligned_cols=50 Identities=24% Similarity=0.391 Sum_probs=46.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
.+++.++.++|+.+++++|.++++..+||+|.+ ++++|+|+..||+.+++
T Consensus 7 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~--------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 7 PPPITVSPDDSLEEALEIMRKNGISRLPVVDED--------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT--------SBEEEEEEHHHHHHHHH
T ss_pred CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC--------CEEEEEEEHHHHHhhhh
Confidence 378999999999999999999999999999877 48999999999999865
No 91
>PRK11573 hypothetical protein; Provisional
Probab=98.39 E-value=4.6e-06 Score=81.72 Aligned_cols=141 Identities=10% Similarity=0.136 Sum_probs=107.5
Q ss_pred CCHHHH--HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHH
Q 022403 31 HSLQET--LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSA 106 (297)
Q Consensus 31 ~~~~e~--Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~d 106 (297)
++.+|+ ++.. |+..+|..+-. |..+|+.|+.++|+.++.+.+.+++..--||++.+ .|..+|||...|
T Consensus 170 l~~~e~~mi~~vl~l~~~~v~eiMt-Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-------~D~IiGiv~~kD 241 (413)
T PRK11573 170 ISRRNQDMLLSVLDLEKVTVDDIMV-PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-------LDDAISMLRVRE 241 (413)
T ss_pred cCHHHHHHHHHHhccCCCChhhcCC-ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-------CCceEEEEEHHH
Confidence 454443 5555 45677776664 47799999999999999999999999999999865 358999999999
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhh
Q 022403 107 IILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRL 186 (297)
Q Consensus 107 Iv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~ 186 (297)
++....+.
T Consensus 242 ll~~~~~~------------------------------------------------------------------------ 249 (413)
T PRK11573 242 AYRLMTEK------------------------------------------------------------------------ 249 (413)
T ss_pred HHHHhhcc------------------------------------------------------------------------
Confidence 88621000
Q ss_pred hhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 187 ~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
..+...++.++++ |.+.|..+.++.++|..|.++|.|=..|+|. -|...||||..||++.+.+
T Consensus 250 -----------~~~~~~~l~~~~r-----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 250 -----------KEFTKENMLRAAD-----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred -----------CcCCHHHHHhhcc-----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC
Confidence 0001112333332 3466779999999999999999999999998 4689999999999999987
Q ss_pred cc
Q 022403 267 CK 268 (297)
Q Consensus 267 ~~ 268 (297)
-.
T Consensus 313 ei 314 (413)
T PRK11573 313 DF 314 (413)
T ss_pred CC
Confidence 65
No 92
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.26 E-value=1.7e-06 Score=77.48 Aligned_cols=95 Identities=24% Similarity=0.389 Sum_probs=77.5
Q ss_pred hhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 187 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 187 ~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
-.-+++.|+..+. ..-+.+.||.+- .+.|.+++++.+++.||.+|++..+||++. ++++|=||-++|++++.+
T Consensus 50 ~k~Il~aL~e~e~-~~ita~~iM~sp----vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le 122 (187)
T COG3620 50 VKRILEALEEAEK-TRITAKTIMHSP----VVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLE 122 (187)
T ss_pred HHHHHHHHHHhhc-ceEeHhhhccCC----eeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhc
Confidence 3456777777665 445677888776 999999999999999999999999999995 699999999999999977
Q ss_pred ccCCchhhhhcccccccc---CCCcccccc
Q 022403 267 CKGRDWFDIIASQPISDL---GLPFMSSDE 293 (297)
Q Consensus 267 ~~g~dwf~~i~~K~lsel---gLp~~~~~~ 293 (297)
-. +++..+..++. -||.+++|+
T Consensus 123 ~~-----e~i~~~~vr~vM~e~fP~Vs~~~ 147 (187)
T COG3620 123 GM-----ESIRSLRVREVMGEPFPTVSPDE 147 (187)
T ss_pred cc-----cchhhhhHHHHhcCCCCcCCCCC
Confidence 54 44555555543 689999886
No 93
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.08 E-value=4.1e-05 Score=75.01 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCCHHHH--HHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehH
Q 022403 30 PHSLQET--LTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS 105 (297)
Q Consensus 30 ~~~~~e~--Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~ 105 (297)
-++.+|+ ++.. |+..+|-++-- |..+++.++.++++.++.+.+.+++-+--||++.+ .|.++|||...
T Consensus 188 ~~~~~E~~mi~~v~~l~~~~v~eiMt-PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~-------~D~iiGiv~~K 259 (429)
T COG1253 188 VLEEEEREMINNVLDLDDRTVREIMT-PRTDIVALDLTDTVEELIELILESGHSRIPVYDGD-------LDNIIGIVHVK 259 (429)
T ss_pred CcCHHHHHHHHHHhccCCcEeeeEee-ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC-------CCcEEEEEEHH
Confidence 3444444 4444 56788877765 37799999999999999999999999999999943 35899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhh
Q 022403 106 AIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADR 185 (297)
Q Consensus 106 dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~ 185 (297)
|+....+....
T Consensus 260 dll~~~~~~~~--------------------------------------------------------------------- 270 (429)
T COG1253 260 DLLRALLDGQS--------------------------------------------------------------------- 270 (429)
T ss_pred HHHHHHhcCcc---------------------------------------------------------------------
Confidence 99983111100
Q ss_pred hhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 186 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 186 ~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
....+..++ |.+-|....+++++|..|.+.|.|=-.|+|.- |.+.|+||..||++.+.
T Consensus 271 ------------~~~~~~~~~---------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy-G~~~GlVTleDIiEeIv 328 (429)
T COG1253 271 ------------DLDLRVLVR---------PPLFVPETLSLSDLLEEFREERTHMAIVVDEY-GGVEGLVTLEDIIEEIV 328 (429)
T ss_pred ------------ccchhhccc---------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC-CCeEEEeEHHHHHHHHh
Confidence 000111222 67778899999999999999999999999984 79999999999999998
Q ss_pred hccCCchhh
Q 022403 266 GCKGRDWFD 274 (297)
Q Consensus 266 ~~~g~dwf~ 274 (297)
+.. .|.+|
T Consensus 329 Gei-~de~d 336 (429)
T COG1253 329 GEI-PDEHD 336 (429)
T ss_pred CCC-cCccc
Confidence 855 33444
No 94
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.08 E-value=1.2e-05 Score=62.62 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.||+.+.+++++.+++.+|.+++++++||+|.+.+++.|+||+.++++.+..+.
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~ 54 (123)
T cd04627 1 EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENA 54 (123)
T ss_pred CCceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhH
Confidence 478999999999999999999999999999985368999999999999876543
No 95
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.00 E-value=7.7e-05 Score=72.28 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=87.6
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
+....+.+..++++.+..+++.++.|+|.+. ++.|+|...++..| ..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~-------~~------------------ 299 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQN--------KLVGVVDVESIKQA-------RK------------------ 299 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCCC--------CEEEEEeHHHHHHH-------hh------------------
Confidence 4566788999999999999999999999873 89999998877653 10
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
....+.+.+... +
T Consensus 300 ---------------------------------------------------------------~~~~~~~~~~~~----~ 312 (363)
T TIGR01186 300 ---------------------------------------------------------------KAQGLQDVLIDD----I 312 (363)
T ss_pred ---------------------------------------------------------------cCCchhhhhccC----C
Confidence 011244455444 6
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+|.++++|.+++.+|.+++.. +||||.+ |+++|+||+.+|++.|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHhh
Confidence 7899999999999999999888 9999974 6999999999999999763
No 96
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.95 E-value=2.1e-05 Score=60.71 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=44.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
|+.++++.++.+++.+|.+++.+.+||+|.++++++|+||..++++.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 789999999999999999999999999997657999999999998865
No 97
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=1.8e-05 Score=62.48 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=49.4
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
++|+++|... +..+.+++++.+++.+|.+++++.+||+|.+ +++.|+||.+++.+
T Consensus 58 ~~v~dim~~~----~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK----PVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC----CCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 7899999765 7889999999999999999999999999974 69999999998753
No 98
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.90 E-value=0.00014 Score=71.33 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=86.3
Q ss_pred EEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccc
Q 022403 58 IEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTV 137 (297)
Q Consensus 58 IeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~ 137 (297)
+....+.+..+|++.|.+++..++.|+|.+ ++++|+|...++..+ ..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~-------~~------------------ 334 (400)
T PRK10070 288 IRKTPGFGPRSALKLLQDEDREYGYVIERG--------NKFVGAVSIDSLKTA-------LT------------------ 334 (400)
T ss_pred cccCCCCCHHHHHHHHHhcCCceEEEEcCC--------CcEEEEEeHHHHHhh-------hh------------------
Confidence 345677899999999999999999999987 389999999888763 00
Q ss_pred cchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCc
Q 022403 138 GALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPF 217 (297)
Q Consensus 138 ~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPF 217 (297)
....+++++... +
T Consensus 335 ---------------------------------------------------------------~~~~~~~~~~~~----~ 347 (400)
T PRK10070 335 ---------------------------------------------------------------QQQGLDAALIDA----P 347 (400)
T ss_pred ---------------------------------------------------------------cCCchhhhhccC----C
Confidence 011245555444 6
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+|.+++++.+++.++.+.... +||||. +|+++|+||+.++++.|.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 7899999999999999886655 999997 4799999999999999865
No 99
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=4.7e-05 Score=57.75 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=48.2
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCCchh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF 273 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~dwf 273 (297)
++.+..++++.+++.+|.+++++++||+|. ++++.|++|+.+++..+.+....+|+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~ 58 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLE 58 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHH
Confidence 578899999999999999999999999996 46999999999999988765544443
No 100
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.86 E-value=2.4e-05 Score=74.47 Aligned_cols=66 Identities=17% Similarity=0.336 Sum_probs=61.2
Q ss_pred cCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 197 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 197 ~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
-.-.-+.||.++|.+. .++|.+|.|+-++..+|.+++++-.||+|.+ +++||||-++|.+.+++|.
T Consensus 166 m~siPk~~V~~~~s~~----~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g~ 231 (294)
T COG2524 166 MVSIPKEKVKNLMSKK----LITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANGN 231 (294)
T ss_pred eeecCcchhhhhccCC----ceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcCC
Confidence 3456789999999988 9999999999999999999999999999965 8999999999999999994
No 101
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.85 E-value=5.2e-05 Score=58.74 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|+..++++.++.+++.+|.+++.+++||+|. +|++.|++|..+++..+.+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~ 51 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKE 51 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhc
Confidence 5789999999999999999999999999997 5799999999999987643
No 102
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.73 E-value=0.00011 Score=46.32 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
|+..+.+++++.+++..|.+++.+.+||++.+ +++.|++|..++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL 48 (49)
T ss_pred CceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence 46778899999999999999999999999974 6899999999998765
No 103
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.72 E-value=0.00026 Score=70.21 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=99.7
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
..+--.+..++++.|=-++-.+.|..--||+|... +.+|+|++.|+.- .
T Consensus 197 ~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~--------kvvGvVt~rDv~~--------~--------------- 245 (432)
T COG4109 197 LEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSM--------KVVGVVTMRDVLD--------K--------------- 245 (432)
T ss_pred cccceeccccccHHHHHHHHHHcCCCccceecccc--------eEEEEEEehhhhc--------C---------------
Confidence 35667789999999999999999999999999874 7999999998876 2
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhcc
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYR 213 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~r 213 (297)
-.+|++..+|++.
T Consensus 246 ------------------------------------------------------------------~~~t~ieKVMtkn- 258 (432)
T COG4109 246 ------------------------------------------------------------------KPSTTIEKVMTKN- 258 (432)
T ss_pred ------------------------------------------------------------------CCCccHHHHhccC-
Confidence 1367888899988
Q ss_pred CCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 214 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 214 waPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
-++|....|+-.+-..|-=.++.-+||||.. .++.|+||+++|++-|...-.
T Consensus 259 ---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 259 ---PITVRAKTSVASVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred ---CeeecccchHHHHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHHHhcc
Confidence 7899999999999999999999999999995 599999999999999876543
No 104
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.68 E-value=6.5e-05 Score=57.74 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=47.8
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.|+..+.. .++..+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+.|
T Consensus 56 ~~v~~~~~---~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~--------~~~~Giit~~di~~~ 111 (111)
T cd04603 56 LKVCEVYI---VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE--------GKLVGTIYERELLRF 111 (111)
T ss_pred cChhheee---cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC--------CeEEEEEEhHHhhcC
Confidence 45665543 456889999999999999999999999999975 389999999999876
No 105
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.68 E-value=4.1e-05 Score=74.42 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=51.4
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.-+-.|||... +++|..++|+-++..+|-+|++|-+||+|.+ .+++||+||++..+-
T Consensus 244 ~LtcadIMSrd----Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRD----VVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCcc----ceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhc
Confidence 44567899999 9999999999999999999999999999985 599999999997763
No 106
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=0.00012 Score=56.37 Aligned_cols=51 Identities=18% Similarity=0.424 Sum_probs=46.1
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+..+.+++++.+++.+|.+++.+.+||+|.+++++.|+||+.++.+++.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~ 53 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGG 53 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhcc
Confidence 678899999999999999999999999998547999999999999988753
No 107
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.62 E-value=0.00012 Score=73.00 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=54.7
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
.+|+++|... +..+.+++++.+++.+|.+++++++||+|.+ |+++|+||..++.+.+.+-.
T Consensus 68 ~~V~dim~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~ 128 (546)
T PRK14869 68 PQVRDLEIDK----PVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDIL 128 (546)
T ss_pred CcHHHhcCCC----CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhc
Confidence 6899999865 8999999999999999999999999999974 69999999999998766533
No 108
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.62 E-value=0.00014 Score=67.05 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=55.6
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
..+|+++|+..+ ||..|.++.++.+++.+|.+++.+.+||+|. +|++.|+||..++.+.+..
T Consensus 196 ~~~V~~im~~~~--~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~ 257 (321)
T PRK11543 196 LNKVHHLMRRDD--AIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVG 257 (321)
T ss_pred HhHHHHHhccCC--CCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhC
Confidence 789999998874 7899999999999999999999999999997 4699999999999886643
No 109
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.00023 Score=55.07 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|++.+.+++++.+++..|.+++++.+||+|. ++++.|+||+.++++.+.
T Consensus 1 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 1 SPPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHH
Confidence 47899999999999999999999999999997 368999999999998775
No 110
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.58 E-value=0.00025 Score=54.53 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=46.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ |++.|+||+.++++.+....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~ 55 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGR 55 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhccccc
Confidence 46889999999999999999999999999974 799999999999988765443
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.57 E-value=9.4e-05 Score=72.87 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=47.2
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA 115 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~ 115 (297)
.+++.+..++++.||.+.|.++++...||+|.+ ++++|+|+..||+..+.++.
T Consensus 203 ~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~--------g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 203 SSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE--------GRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC--------CeEEEEEEHHHHHHHHHhhh
Confidence 357889999999999999999999999999976 38999999999999766554
No 112
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.55 E-value=0.00035 Score=52.64 Aligned_cols=52 Identities=12% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+++.+.+++++.+++..|.+++..++||+|. +|++.|+||+.++++.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~ 53 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARD 53 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhC
Confidence 35788999999999999999999999999997 47999999999999877543
No 113
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.55 E-value=0.00022 Score=54.40 Aligned_cols=48 Identities=8% Similarity=0.231 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
++..|++++++.+++.+|.+++++.+||+|. ++++.|++|.+++.+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~ 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC
Confidence 4788999999999999999999999999997 46999999999998744
No 114
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00029 Score=54.19 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=45.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++.++.++.++.+++.+|.+++++++||+|. |++.|++|+.++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~ 51 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPF 51 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHH
Confidence 5788999999999999999999999999995 6999999999999877653
No 115
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00023 Score=54.51 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=45.4
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+|+..+.+++++.+++.+|.+++.+++||+|. |++.|++|+.++++.+..
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~ 50 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRS 50 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhh
Confidence 36889999999999999999999999999995 699999999999987764
No 116
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.54 E-value=0.00037 Score=43.90 Aligned_cols=46 Identities=35% Similarity=0.476 Sum_probs=41.0
Q ss_pred cEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 57 VIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 57 VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.+.++.++++.++.+.+.++++..+||++.+ ++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE--------GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC--------CeEEEEEEHHHHHHh
Confidence 4678999999999999999999999999975 279999999998764
No 117
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.54 E-value=0.00036 Score=53.39 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=45.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+..+.++.++.+++.+|.+++.+.+||+|.+.+++.|++|.+++++.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~ 52 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA 52 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence 368899999999999999999999999999743699999999999987654
No 118
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=97.53 E-value=0.00029 Score=52.58 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.|++.++.++++.+++.+|.+++.+++||+|. +++.|++|+.++.+.+.+.
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~ 51 (110)
T cd04609 1 GDVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEG 51 (110)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcc
Confidence 36788999999999999999999999999996 6899999999999987643
No 119
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.51 E-value=0.00026 Score=65.78 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred CccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 201 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 201 k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
...+|+++|.+. .++..|.+++|+.+++.+|.+++.+.+||+|. +|+++|+||..++.+.+..
T Consensus 200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~ 262 (326)
T PRK10892 200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDM 262 (326)
T ss_pred ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhc
Confidence 567899999861 24899999999999999999999888888886 5799999999999886553
No 120
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00043 Score=52.22 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.|++|.+++++.+++.+|.+.+.+++||+|. +|++.|+||+.++.+.+.+.
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~ 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEG 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhc
Confidence 4789999999999999999899999999997 46999999999999887654
No 121
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.50 E-value=0.00028 Score=57.06 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=45.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+.++..++++.+++.+|.+++.+.+||+|. ++++.|+||+.+++..+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~ 51 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFE 51 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhc
Confidence 3677899999999999999999999999997 4799999999999998863
No 122
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.48 E-value=0.00054 Score=49.94 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=47.8
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
++..+..+.++.+++.+|.+++.+++||+|.+ +++.|+++++++++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~ 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC
Confidence 46788999999999999999999999999974 6999999999999988765543
No 123
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.00043 Score=52.30 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=45.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
++..+..++++.+++.+|.+++.+++||+|.+ +++.|+||+.++++.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~ 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAG 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhcc
Confidence 47789999999999999999999999999974 7999999999999887653
No 124
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.42 E-value=0.00044 Score=56.86 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=45.0
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
|+.+.+++++.+++.+|.+++++.+||+|.+ +++.|+||..++++.+..
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFT 51 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhh
Confidence 6889999999999999999999999999974 699999999999998864
No 125
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.41 E-value=0.00045 Score=61.86 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=52.6
Q ss_pred ccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 202 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 202 ~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
-.+|+++|... ++..+++++++.+++.+|.+++.+.+||+|.+ |++.|+||+.++++.+.
T Consensus 154 ~~~v~~im~~~---~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTT---DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCC---CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHh
Confidence 37899999654 37789999999999999999999999999974 69999999999998765
No 126
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.41 E-value=0.00047 Score=69.50 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=54.7
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
..+.+|+|+|++. +..+++++++.+++..|.+++.+.+||+|. ++++.|+||..++.+.+.
T Consensus 444 L~~~~V~dim~~~----~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~ 504 (574)
T PRK01862 444 LRTTQMRELIQPA----QTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLL 504 (574)
T ss_pred HhhCcHHHHhcCC----CceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence 5678999999876 788999999999999999999999999997 469999999999998654
No 127
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.39 E-value=0.0005 Score=52.73 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=46.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ |++.|++|.+++++.+..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~ 53 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSL 53 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcccc
Confidence 57889999999999999999999999999974 79999999999999876544
No 128
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.37 E-value=0.00061 Score=51.96 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHhhcC-CceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~r-l~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+|.+++++.++.+++.+|.+++ .+.+||+|. ++++.|+||..+++..+.
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence 4788999999999999998775 899999996 469999999999998764
No 129
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.36 E-value=0.00068 Score=51.08 Aligned_cols=49 Identities=10% Similarity=0.358 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++++.+++++.+++.+|.+++.+++||+|. +++.|+||+.++++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~ 50 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIAR 50 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhc
Confidence 4678999999999999999999999999996 689999999999987654
No 130
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.36 E-value=0.00034 Score=67.72 Aligned_cols=62 Identities=15% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+...+|+++|... ++.+.+++++.+++.+|.++++.++||+|. ++++.|+||..++.+.+.+
T Consensus 332 l~~~~v~~im~~~----~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 332 LKNATVKDLHLPA----PVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred hccCCHHHhCcCC----CeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhc
Confidence 6778999999765 899999999999999999999999999997 4689999999999987654
No 131
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.36 E-value=0.00074 Score=50.95 Aligned_cols=50 Identities=14% Similarity=0.319 Sum_probs=45.3
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.++.+.++.+++.+|.+++...+||+|.+++++.|++|+.++++.+.+
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence 67899999999999999999999999999754799999999999998764
No 132
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.35 E-value=0.00076 Score=53.67 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+.++.++.+++.+|.+++++++||+|.+ +++.|+||..++++.+.+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHH
Confidence 57889999999999999999999999999974 689999999999986654
No 133
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00047 Score=53.98 Aligned_cols=49 Identities=16% Similarity=0.344 Sum_probs=44.7
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.++++.++.+++..|.+++.+.+||+|.+ |++.|+||+.++++.+.+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~ 51 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLS 51 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcC
Confidence 6789999999999999999999999999974 799999999999987754
No 134
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.33 E-value=0.00093 Score=50.07 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=45.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+..++++.++.+++.+|.+++.+++||+|.+ +++.|++|..++++.+...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~ 52 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALR 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhc
Confidence 46788999999999999999999999999974 6999999999999877643
No 135
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00082 Score=52.44 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=44.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+..+.+++++.+++.+|.+++.+.+||+|.+ +++.|+||+.++...+..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~ 51 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVR 51 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhh
Confidence 46788999999999999999999999999975 699999999999987643
No 136
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.32 E-value=0.00061 Score=53.95 Aligned_cols=50 Identities=10% Similarity=0.272 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+.++.++.+++.+|.+++.+++||+|. ++++.|+||+.++++.+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~ 52 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAEL 52 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcc
Confidence 5788999999999999999999999999997 4699999999999986654
No 137
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.00062 Score=51.44 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=44.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+++++++.+++.+|.+++.+++||+|.+ +++.|+||+.++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhh
Confidence 46789999999999999999999999999974 699999999999986654
No 138
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.30 E-value=0.00075 Score=51.06 Aligned_cols=53 Identities=26% Similarity=0.480 Sum_probs=47.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
..+.+.++.++.+++.+|++|++.++||++.+ +++|+||..++++.+......
T Consensus 8 ~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~--~l~Giit~~di~~~~~~~~~~ 60 (117)
T COG0517 8 DVITVKPDTSVRDALLLMSENGVSAVPVVDDG--KLVGIITERDILRALAAGGKR 60 (117)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCC--EEEEEEEHHHHHHHHhccCCc
Confidence 37899999999999999999999999999953 799999999999999866543
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.29 E-value=0.00092 Score=51.45 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=43.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
...+.+++++.+++.+|.+++.+.+||+|. +|++.|+||..++++.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~ 51 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGR 51 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhh
Confidence 356789999999999999999999999997 4699999999999987754
No 140
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.25 E-value=0.00098 Score=50.87 Aligned_cols=50 Identities=10% Similarity=0.317 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+..++++.+++..|.+++.+++||+|.+ +++.|++|+.++++.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~ 51 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPS 51 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhh
Confidence 46788999999999999999999999999974 799999999999887653
No 141
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.23 E-value=0.0011 Score=49.76 Aligned_cols=50 Identities=10% Similarity=0.221 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+++++++.+++.+|.+++.+++||+|.+ +++.|+||..++.+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFD 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhc
Confidence 35778999999999999999999999999974 699999999999987654
No 142
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.22 E-value=0.0012 Score=49.54 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=44.5
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|++|..++.+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~ 50 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLAS 50 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhc
Confidence 5788999999999999999999999999996 689999999999988754
No 143
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.22 E-value=0.00096 Score=52.62 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=46.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
+++.+.+++++.+++.+|.+++.+++||+|.+ +++.|+||+.+++..+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~ 53 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGK 53 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccC
Confidence 46789999999999999999999999999974 69999999999998886543
No 144
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.21 E-value=0.0011 Score=49.56 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++..+.++.++-+++..|.+++.+.+||+|. +|++.|++|..++++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~ 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc
Confidence 4678899999999999999999999999986 469999999999997543
No 145
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.17 E-value=0.00089 Score=50.73 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=46.2
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
-|++.+- ..+.+.+.+++++.++.++|.++++...||+|.+ ++|+|+|+..+|+.
T Consensus 53 ~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------~~~~G~it~~di~~ 107 (108)
T cd04596 53 TTIEKVM---TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN--------KKLLGIISRQDVLK 107 (108)
T ss_pred ccHHHHh---cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC--------CCEEEEEEHHHhhc
Confidence 3555443 2467899999999999999999999999999965 38999999999875
No 146
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.17 E-value=0.00077 Score=66.02 Aligned_cols=74 Identities=9% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
.+++++-=.|.+++|+|||+.. ...+.++.++++-+++.++.+++..|+||.+.+..+++|||+..|++..+.+
T Consensus 179 ~~~i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~ 252 (408)
T TIGR03520 179 QKILQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK 252 (408)
T ss_pred HHHHHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc
Confidence 4455555568899999999752 3389999999999999999999999999999766799999999999976643
No 147
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.16 E-value=0.0015 Score=49.41 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=43.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
-+.+.+++++.+++.+|.+++.+++||+|. ++++.|++|+.++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~ 51 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALE 51 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhh
Confidence 467789999999999999999999999997 4699999999999986544
No 148
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.16 E-value=0.0017 Score=48.54 Aligned_cols=49 Identities=6% Similarity=0.247 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.+..+.+++++.+++..|.+++.+.+||+|.+ +++.|+||+.++++.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~ 51 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK 51 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh
Confidence 36778999999999999999999999999974 69999999999987653
No 149
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.14 E-value=0.0015 Score=49.30 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=43.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++..+..+.++.+++.+|.+++.+++||+|. +++.|+||..+++..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~ 49 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVV 49 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHh
Confidence 3677899999999999999999999999996 69999999999997654
No 150
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.14 E-value=0.0014 Score=49.18 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+++.+++++++.+++.+|.+++.+++||+|. +++.|++|..++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhc
Confidence 4788999999999999999999999999997 689999999999887654
No 151
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.0017 Score=49.12 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=44.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+|..+.+++++.+++..|.+++.+++||+|. .|++.|++|+.+++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~ 51 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLF 51 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhh
Confidence 4788999999999999999999999999997 4699999999999886654
No 152
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.09 E-value=0.0016 Score=49.23 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=44.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.+++++.+++.+|.+++.+.+||+|. +++.|+|+..++.+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~ 50 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPS 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhc
Confidence 4678999999999999999999999999996 699999999999987753
No 153
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.06 E-value=0.0022 Score=48.38 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++..+.++.++.+++.+|.+++.+++||+|. +++.|+||..+++..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~ 50 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVA 50 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHh
Confidence 5788999999999999999999999999995 699999999999865443
No 154
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.002 Score=48.62 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=43.6
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
|+..+..++++.+++..|.+++.+++||+|. +++.|++|.+++.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~ 50 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALR 50 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHh
Confidence 6788999999999999998889999999997 68999999999988763
No 155
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0015 Score=52.89 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=45.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
+++.++.++++.+++.+|.+.+...+||+|. ++++|++|..++.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~ 51 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTH 51 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhc
Confidence 3678999999999999999999999999996 6999999999999888643
No 156
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.05 E-value=0.0014 Score=49.96 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHhhcC-CceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~r-l~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|+..+.+++++-+++..|..++ .+.+||+|. |++.|+||..++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~ 52 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTP 52 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhch
Confidence 4667889999999999998776 899999997 6999999999999876643
No 157
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.01 E-value=0.0018 Score=48.36 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=42.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.++++.|.+++....||+|.+ ++|+|+|+..+|+.
T Consensus 60 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~--------g~~~Gvi~~~di~~ 106 (107)
T cd04610 60 KDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN--------NNLVGIITNTDVIR 106 (107)
T ss_pred CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC--------CeEEEEEEHHHhhc
Confidence 457889999999999999999999999999976 38999999999875
No 158
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.00 E-value=0.0027 Score=48.45 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=45.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
|+..+.++.++.+++..|.+++.+++||+|. ++++.|++|..++.+.+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~ 52 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEAD 52 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcc
Confidence 4667889999999999999999999999997 46999999999999877643
No 159
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.00 E-value=0.0022 Score=48.27 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=44.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+..+++++++.+++..|.+++.+++||+|.+ +++.|+||+.++.+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~ 53 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKG 53 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhcc
Confidence 46678899999999999998899999999974 6999999999999988654
No 160
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.98 E-value=0.0034 Score=47.79 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+.+.+++++.+++..|.+++.+.+||+|. ++++.|++|+.++++.+.+.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~ 53 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKG 53 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcC
Confidence 456889999999999999999999999997 46999999999999877654
No 161
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.90 E-value=0.0024 Score=48.99 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=42.7
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL 264 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L 264 (297)
++.+.+++++.+++..|.+++.+.+||+|. +|++.|++|..++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~ 49 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAG 49 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhc
Confidence 678999999999999999999999999996 47999999999998753
No 162
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.88 E-value=0.0034 Score=59.08 Aligned_cols=73 Identities=10% Similarity=0.183 Sum_probs=61.7
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.++|.+-=.|...+|++||+.. ..++.+..+.++-+++.++.+++..|+||++.+.++++|||+-.+++..+.
T Consensus 55 ~~~i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~ 127 (292)
T PRK15094 55 RDMLEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR 127 (292)
T ss_pred HHHHHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh
Confidence 4555555568999999999852 238999999999999999999999999999975568999999999997664
No 163
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0033 Score=49.30 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
|++.+..++++.+++.+|.+++.+.+||+|.+ |++.|+||..++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhh
Confidence 57889999999999999999999999999964 68999999999886
No 164
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.86 E-value=0.0023 Score=50.52 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.++..++.++++.+|.++|.++++...||+|.+ ++++|+|+..+|..
T Consensus 66 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~--------~~l~Givt~~dl~~ 112 (113)
T cd04597 66 RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD--------GTPAGIITLLDLAE 112 (113)
T ss_pred CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC--------CeEEEEEEHHHhhc
Confidence 467889999999999999999999999999976 38999999998853
No 165
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.84 E-value=0.0036 Score=63.55 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=61.7
Q ss_pred hhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCcee
Q 022403 162 GAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 241 (297)
Q Consensus 162 ~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rv 241 (297)
|.+.|=-++--++++- .--.+..++|.+.+ .+|+++|..+--.| ..|.+++|+.+++.+|.+++.+.+
T Consensus 64 gdalAiala~~gG~g~---Ih~n~sie~qa~lV--------~kVk~~~~g~i~~~-~tV~pd~tl~eAl~~m~~~~~~~v 131 (502)
T PRK07107 64 DDNMAIALAREGGLSF---IFGSQSIESEAAMV--------RRVKNYKAGFVVSD-SNLTPDNTLADVLDLKEKTGHSTV 131 (502)
T ss_pred hHHHHHHHHHcCCCeE---eeCCCCHHHHHHHH--------HHHHHHhcCCcCCC-CEeCCCCcHHHHHHHHHhcCCCeE
Confidence 4444444455555551 00013345555333 56778776554555 488999999999999999999999
Q ss_pred EEEcCC--CCCeeEEeehHHHH
Q 022403 242 PIIEPG--TPDIKNYITQSAVV 261 (297)
Q Consensus 242 PVVd~~--~~~i~niITQSaVI 261 (297)
||+|.+ ++++.||||..++.
T Consensus 132 pVVD~~~~~gkLvGIVT~~DLr 153 (502)
T PRK07107 132 AVTEDGTAHGKLLGIVTSRDYR 153 (502)
T ss_pred EEEeCCCcCCEEEEEEEcHHhh
Confidence 999963 57999999999985
No 166
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.82 E-value=0.0044 Score=46.80 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=42.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
+..+.+++++.+++.+|.+++.+.+||+|.+ ++.|++|..+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~G~v~~~dl~~~~~ 49 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDNE--KPVGIITERDLVKKVV 49 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHh
Confidence 5678899999999999999999999999963 8999999999998764
No 167
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.82 E-value=0.0028 Score=48.24 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCcEEecCC--CCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMAD--TTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d--~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+++.+.++ +++.+|.+.|.++++...||+|.+ ++++|+|+..+|+.
T Consensus 66 ~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~--------~~~~Gvit~~dl~~ 114 (115)
T cd04620 66 QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ--------GQLIGLVTAESIRQ 114 (115)
T ss_pred CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC--------CCEEEEEEhHHhhc
Confidence 356778777 789999999999999999999875 38999999999874
No 168
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0029 Score=47.81 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=45.5
Q ss_pred CccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 44 IPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 44 IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.|+..+-. .++..+..++++.+|+++|.++++...||+|.. +|+|+|+..+|+.
T Consensus 58 ~~v~~~~~---~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~---------~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMN---PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGG---------TLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhC---CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECC---------EEEEEEEHHHhhc
Confidence 45665543 357789999999999999999999999999843 8999999999875
No 169
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.80 E-value=0.0037 Score=47.43 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=42.3
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.+++++|.++++...||+|.+ ++|+|+|+..+|..
T Consensus 61 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~--------~~~~Gvit~~dll~ 107 (109)
T cd04606 61 TDVISVSADDDQEEVARLFEKYDLLALPVVDEE--------GRLVGIITVDDVID 107 (109)
T ss_pred CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC--------CcEEEEEEhHHhhh
Confidence 357899999999999999999999999999865 38999999999875
No 170
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.77 E-value=0.0053 Score=46.43 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=42.6
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
++.+.++.++.+++.+|.+++.+.+||+|. +++.|++|..++++.+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~ 50 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLL 50 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHc
Confidence 467789999999999999999999999996 589999999999987653
No 171
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.76 E-value=0.0031 Score=46.92 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.++++.|.+++....||+|.. +|+|+|+..+|++
T Consensus 59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~---------~~~G~it~~~l~~ 104 (105)
T cd04599 59 REVVTISPEASLLEAKRLMEEKKIERLPVLRER---------KLVGIITKGTIAL 104 (105)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECC---------EEEEEEEHHHhcc
Confidence 467899999999999999999999999999863 8999999999874
No 172
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0037 Score=62.53 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=44.9
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wv 111 (297)
.+++.+..++++.+|+++|.++++...||+|.+ ++++|+|+..||+..+
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~--------g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN--------GRLKGLITVKDIEKAE 204 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CcEEEEEEhHHhhhhh
Confidence 578999999999999999999999999999976 3899999999999853
No 173
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0062 Score=60.89 Aligned_cols=138 Identities=17% Similarity=0.303 Sum_probs=103.4
Q ss_pred HHHHHHH--hhcCccccCCCCCCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHH
Q 022403 34 QETLTAA--FARIPVLSFPNVPGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWV 111 (297)
Q Consensus 34 ~e~Ln~~--fa~IPVsSfP~~~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wv 111 (297)
++.|-.. ++.+-|+.+ -+|...+..|+.|++..+-++.|.+.-----||+..+ .|..+||+-..++.+|+
T Consensus 188 rdmL~gvLDLe~~tV~DI-MvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-------~DnIiGvlh~r~llr~l 259 (423)
T COG4536 188 RDMLLGVLDLENLTVSDI-MVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-------LDNIIGVLHVRDLLRLL 259 (423)
T ss_pred HHHHhcccccccceeeee-eccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-------hhHhhhhhhHHHHHHHh
Confidence 3444443 345667766 4567899999999999999999988766667999876 35899999888888864
Q ss_pred HHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHH
Q 022403 112 LETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFY 191 (297)
Q Consensus 112 Le~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~ 191 (297)
.|..+
T Consensus 260 ~e~~~--------------------------------------------------------------------------- 264 (423)
T COG4536 260 NEKNE--------------------------------------------------------------------------- 264 (423)
T ss_pred hccCc---------------------------------------------------------------------------
Confidence 43322
Q ss_pred HHhhhcCCCCccchhhH-hhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 192 KVILQEEPFKSTTVRSI-IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 192 ~~L~~~e~~k~tkV~dI-~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
|....+..+ .+.| |+| ..+++.+-|.-|.++|-|-=-|||. -|++.|+||-.||++-+.+-+-
T Consensus 265 --------~~k~d~~~~a~epy----FVP--e~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 265 --------FTKEDILRAADEPY----FVP--EGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred --------ccHhHHHHHhcCCe----ecC--CCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhcccc
Confidence 222222222 3445 655 8889999999999999888889998 5799999999999998876654
No 174
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.67 E-value=0.0019 Score=65.21 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+..+..|++++|... ++++.++.++-+++.+|.+++.+.+||+|. ++++.||||..++.
T Consensus 84 ~~l~~VKv~~iMi~~----pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~ 142 (479)
T PRK07807 84 EVVAWVKSRDLVFDT----PVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCA 142 (479)
T ss_pred HHHhhcccccccccC----CeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHh
Confidence 445688899998766 899999999999999999999999999996 56999999999973
No 175
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.60 E-value=0.0043 Score=46.97 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=41.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.+..++++.+|++.|.+++....||+|.+ +++|+|+..||+.
T Consensus 58 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~---------~~iGvit~~dl~~ 103 (104)
T cd04594 58 RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDG---------KFKGIVTLDSILD 103 (104)
T ss_pred cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECC---------EEEEEEEHHHhhc
Confidence 456889999999999999999999999999743 8999999999864
No 176
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.48 E-value=0.008 Score=46.06 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=40.9
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI~ 262 (297)
+...+..++++.+++.+|.+++.+.+||+|.+ ++++.|+||..++..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence 45678899999999999999999999999963 479999999999864
No 177
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.48 E-value=0.0097 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=41.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH-HHHh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLE 265 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI-~~L~ 265 (297)
+..+.+++++-+++.+|.+++.+.+||+|. |++.|+||..+++ +.+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~ 50 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA 50 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh
Confidence 577899999999999999999999999996 7999999999987 3443
No 178
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0091 Score=60.46 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=89.4
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccccc
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGT 134 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~ 134 (297)
.+-+.+.++.|+.|+++.-..++..+.||-+..- -..|++|+|+-.||=..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-----~~~KLvG~vtsrdi~f~------------------------ 166 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-----RGSKLVGIITSRDIQFL------------------------ 166 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCc-----ccceeEEEEehhhhhhh------------------------
Confidence 3446788899999999999999999999986432 12489999987776441
Q ss_pred ccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccC
Q 022403 135 GTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRW 214 (297)
Q Consensus 135 ~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rw 214 (297)
.-.++-+.++|...
T Consensus 167 ----------------------------------------------------------------~~~~~~~~~vmt~~-- 180 (503)
T KOG2550|consen 167 ----------------------------------------------------------------EDNSLLVSDVMTKN-- 180 (503)
T ss_pred ----------------------------------------------------------------hcccchhhhhcccc--
Confidence 01356688888887
Q ss_pred CCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 215 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 215 aPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
-+....+.+|-++=.+|.|.+-+++||||. +|.++++|+++|+.+-
T Consensus 181 --~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 181 --PVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred --cccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 377788999999999999999999999998 5799999999998764
No 179
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.43 E-value=0.0075 Score=45.08 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=41.1
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
.+..+..++++-+++.+|.+++.+++||+|.+ |++.|++|.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~ 48 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRF 48 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeee
Confidence 46788999999999999999999999999974 79999999998863
No 180
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.38 E-value=0.0068 Score=46.73 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=41.0
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+.+.++.++++.++.++|.++++...||.+.+ +|+|+|+..+|..
T Consensus 59 ~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~---------~~~Gvvt~~dl~~ 104 (105)
T cd04591 59 PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEG---------RLVGIITRKDLLK 104 (105)
T ss_pred CCCceECCCCcHHHHHHHHHHcCCCEEEEEECC---------eEEEEEEhhhhhc
Confidence 356789999999999999999999999999643 8999999999865
No 181
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.018 Score=60.88 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=97.6
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccc
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVG 133 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g 133 (297)
+++|+.++.-..+..-+++|...+=.+=||+|....+.. .+..|+|-.+.++.- |+...--.. +..
T Consensus 589 ~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~---~~l~GlILRshl~vl-L~~~~f~~~--~~~-------- 654 (762)
T KOG0474|consen 589 SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEA---GRLHGLILRSHLLVL-LKKRVFVEE--SRS-------- 654 (762)
T ss_pred cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccc---hhhhHHHHHHHHHHH-HHhhhhhcc--Ccc--------
Confidence 568999999999999999999999999999996432211 578999988888874 333322211 000
Q ss_pred cccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchh-------
Q 022403 134 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVR------- 206 (297)
Q Consensus 134 ~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~------- 206 (297)
+ .+-|......-+||++ ++..+++..+.
T Consensus 655 ----------------~--------------------------~~~~~~~~~~~~d~a~---r~~~i~dv~lt~~e~~~y 689 (762)
T KOG0474|consen 655 ----------------T--------------------------FDLPVRRKFTFRDFAK---REPSIEDVHLTSEEMEMY 689 (762)
T ss_pred ----------------c--------------------------cCcchhhcCCHHHhhh---cCCchhhhhcchHhHhhc
Confidence 0 0112222333445553 22222222221
Q ss_pred ----hHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 207 ----SIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 207 ----dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.+|... -.+|..++|+-.+..|+..-++|.+-||+..+ .++|||||.|..++
T Consensus 690 vDl~p~~n~s----PytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 690 VDLHPFMNPS----PYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RVVGILTRKDLARY 745 (762)
T ss_pred cccccccCCC----CcccCcccchHHHHHHHHHhcceeEEEecCCC-ceeEEEehhhhhhH
Confidence 122222 46788899999999999999999999999865 77999999999854
No 182
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.21 E-value=0.018 Score=43.28 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=40.5
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 262 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~ 262 (297)
...++++.++-+++.+|.+.+..++||+|.+ +++.|++|+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~ 47 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLR 47 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHh
Confidence 5678899999999999999899999999975 79999999999975
No 183
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.18 E-value=0.0081 Score=59.69 Aligned_cols=47 Identities=17% Similarity=0.378 Sum_probs=42.7
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCC--CCeeEEeehHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQ 262 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~--~~i~niITQSaVI~ 262 (297)
+++.+++++|+.+++.+|.+++.+++||+|.+. ++++|+||..+++.
T Consensus 89 ~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 89 DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence 378999999999999999999999999999753 69999999999974
No 184
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.05 E-value=0.0069 Score=61.15 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
+..+..|++++|... ++.+.+++++.+++.+|.+++.+.+||+|. +++.||||+.++.
T Consensus 83 e~v~~VKv~eim~~~----pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~ 140 (475)
T TIGR01303 83 QTVAFVKSRDLVLDT----PITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLL 140 (475)
T ss_pred HHHhhcchhhccccC----CeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhh
Confidence 445688899988665 789999999999999999999999999994 5899999999973
No 185
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.00 E-value=0.0071 Score=61.18 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=41.4
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHH
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVV 261 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI 261 (297)
++.+.+++|+.+++.+|.+++..++||+|.+ +++++||||..++.
T Consensus 106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 5789999999999999999999999999975 37999999999986
No 186
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.1 Score=55.13 Aligned_cols=177 Identities=19% Similarity=0.245 Sum_probs=118.7
Q ss_pred cchhhHHHHHHhhccCCCCHHHHHHHHhhcCccccCCCCCCCCcEEecCC-CCHHHHHHHHHHCCCcccceecCCCCCCC
Q 022403 14 SSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRVIEIMAD-TTIPDAVKILSECNILSAPVKIPDAPSSS 92 (297)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~e~Ln~~fa~IPVsSfP~~~~~~VIeI~~d-~sI~dAvkiLse~nIlsAPV~D~da~~~~ 92 (297)
.+-+-|=..|+-+..++|..++.+. -=..+|+- .|.....+++.+..+ +|+.|--.+|.+-.-.+=||+-.++.
T Consensus 517 gk~gIyda~I~~ng~P~l~~k~e~~-~t~~~~v~-~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~s--- 591 (696)
T KOG0475|consen 517 GKTGIYDAHIELNGYPFLDSKSEFS-STLAIPVM-EPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDS--- 591 (696)
T ss_pred ccchHHHHHHHhcCCCCcccccccc-cchhhhhh-chhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcccc---
Confidence 3444455667777788887776665 33345553 555444578999888 99999999999988889999965543
Q ss_pred ccccceeEEEehHHHHHHHHHHHHHHHhhhccccccccccccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhc
Q 022403 93 DWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAE 172 (297)
Q Consensus 93 ~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d 172 (297)
.+.+|+|+=.+++.-++.-....+- ..++. +..+.|-
T Consensus 592 ---q~lvGfv~rr~l~~~i~~ar~~q~~--~~~~~-----------------~~f~~~~--------------------- 628 (696)
T KOG0475|consen 592 ---QRLVGFVLRRNLFLAILNARKIQSF--IVTTS-----------------IYFNDPS--------------------- 628 (696)
T ss_pred ---ceeEEEEchHHHHHHHhhhcccccc--ceecc-----------------cccCCCC---------------------
Confidence 4899999999999865422211110 00000 1111110
Q ss_pred ccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCee
Q 022403 173 KGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK 252 (297)
Q Consensus 173 ~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~ 252 (297)
|.. .. ..-.--+-++|+.-. .++|....++-+++.++.|-+++.+-|.. +|++.
T Consensus 629 -------~~~-~~------------~~~~~~~lk~il~~t----p~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~ 682 (696)
T KOG0475|consen 629 -------PSA-VA------------GIPSRLDLKDILDMT----PFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILL 682 (696)
T ss_pred -------ccc-cC------------CCCCCcCceeeccCC----cccccccCcHHHHHHHHHhhCceEEEEcc--CCeeE
Confidence 000 00 011123456777655 57999999999999999999999998887 56999
Q ss_pred EEeehHHHHHHH
Q 022403 253 NYITQSAVVQGL 264 (297)
Q Consensus 253 niITQSaVI~~L 264 (297)
|+||.-++++..
T Consensus 683 Giitkkd~l~~~ 694 (696)
T KOG0475|consen 683 GIITKKDCLRHT 694 (696)
T ss_pred eeeehHHHHHhh
Confidence 999999998764
No 187
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.59 E-value=0.03 Score=56.60 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=49.1
Q ss_pred CCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHH
Q 022403 55 GRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELA 118 (297)
Q Consensus 55 ~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a 118 (297)
..++.+.+++...|+.+++.++++.++||+|.+ +|.+|+|++.|||.-+-++.+..
T Consensus 204 ~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~--------~~LiG~itiDDiidvi~eEa~eD 259 (451)
T COG2239 204 DDVVSVLADDDQEEVARLFEKYDLLAVPVVDED--------NRLIGIITIDDIIDVIEEEATED 259 (451)
T ss_pred ccceeecccCCHHHHHHHHHHhCCeecceECCC--------CceeeeeeHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999999998 48999999999999766666444
No 188
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.56 E-value=0.026 Score=57.39 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=44.5
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL 112 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvL 112 (297)
+++.++.++++.||.++|.++++...||+|.+ ++++|+|+..||+.++.
T Consensus 174 ~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~--------g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 174 DLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED--------GELVDLVTRTDVKRVKG 222 (505)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC--------CeEEEEEEHHHHHHHhh
Confidence 38899999999999999999999999999876 38999999999999643
No 189
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.63 E-value=0.098 Score=51.59 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=69.5
Q ss_pred hhHHHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 188 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 188 ~df~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+-.+++++-=.+.++.|++||.. |.-.+.++.+++.-+++..+.+.+-.|+||.+.+...++|||.--+++..+...
T Consensus 191 ~~E~~mi~~v~~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 191 EEEREMINNVLDLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred HHHHHHHHHHhccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 344666766677999999999987 577888889999999999999999999999996677999999999999988877
Q ss_pred cC
Q 022403 268 KG 269 (297)
Q Consensus 268 ~g 269 (297)
..
T Consensus 269 ~~ 270 (429)
T COG1253 269 QS 270 (429)
T ss_pred cc
Confidence 54
No 190
>PRK11573 hypothetical protein; Provisional
Probab=94.45 E-value=0.13 Score=50.91 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=61.6
Q ss_pred HHHhhhcCCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 191 YKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 191 ~~~L~~~e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
.++|++-=.|.+++|++||... .-.+.++.++++-+++.++.+++-.|+||.+.+...|+|||.--+++..+.
T Consensus 175 ~~mi~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 175 QDMLLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred HHHHHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 3445444568999999999654 458899999999999999999999999999987679999999999997654
No 191
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=92.34 E-value=0.48 Score=45.62 Aligned_cols=118 Identities=16% Similarity=0.301 Sum_probs=90.3
Q ss_pred CCCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHHHHHHHHhhhcccccccccc
Q 022403 53 PGGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGV 132 (297)
Q Consensus 53 ~~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe~~e~a~~~~~~~~~~a~g~ 132 (297)
|.+|++.|+.+.++.+-...+.+..=+--||+..+ +|..+||+--.|+..++-..
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-------kD~v~GIL~AKDLL~~~~~~------------------ 129 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-------KDHVEGILLAKDLLPFMRSD------------------ 129 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-------chhhhhhhhHHHHHHHhcCC------------------
Confidence 46899999999999999999999988888999876 35788998666666641000
Q ss_pred ccccccchhhhhhccCCcchhhhhhHHhhhhhhhccchhcccCCCCCcchhhhhhhhHHHHhhhcCCCCccchhhHhhhc
Q 022403 133 GTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSY 212 (297)
Q Consensus 133 g~~a~~~~~a~al~~~~P~~~~~~~~~a~~aa~~~~~~~d~~~~~~~~~~~~~~~~df~~~L~~~e~~k~tkV~dI~~s~ 212 (297)
.++| .++++.+.
T Consensus 130 ----------------------------------------------------------------~~~F---~i~~lLRP- 141 (293)
T COG4535 130 ----------------------------------------------------------------AEPF---DIKELLRP- 141 (293)
T ss_pred ----------------------------------------------------------------cccc---cHHHhccc-
Confidence 0112 25555543
Q ss_pred cCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhcc
Q 022403 213 RWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK 268 (297)
Q Consensus 213 rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~ 268 (297)
-+-|..+..+--+|+-+...|-|--.|||. =|-+.|+||-.+|++.+.+-.
T Consensus 142 ----av~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVGdI 192 (293)
T COG4535 142 ----AVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVGDI 192 (293)
T ss_pred ----ceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhccc
Confidence 355557778888888888888899999998 468999999999999887665
No 192
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=91.89 E-value=0.49 Score=46.21 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHHHHH
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE 113 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~wvLe 113 (297)
...+..+..|+++.|++..+.+++.- .||+|.+ +||+|+|+..+++..+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~--------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED--------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC--------CcEEEEEEHHHHHHHHHh
Confidence 34567899999999999999999988 9999987 489999999999886543
No 193
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=87.83 E-value=0.87 Score=47.92 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 54 GGRVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 54 ~~~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.++++.+...+-+-||.=.|.+|||.--||.+.. +.+|||+..||+..
T Consensus 221 T~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g---------q~~Gilt~~dIl~l 268 (610)
T COG2905 221 TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG---------QPLGILTLTDILRL 268 (610)
T ss_pred ccCceeecCcchHHHHHHHHHHhCCceeeeecCC---------eeeEEeeHHHHHHh
Confidence 5799999999999999999999999999999987 89999999999983
No 194
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=86.08 E-value=1.5 Score=43.38 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=41.1
Q ss_pred ceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhh
Q 022403 217 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEG 266 (297)
Q Consensus 217 FlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~ 266 (297)
+.+|.++.+|.+++.++.+.+ .-+||+|. |+++|+||+.++++.|.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTG-GAILLVEN--GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCC-CCeEEeeC--CeEEEEEeHHHHHHHHhc
Confidence 678899999999999998765 56999994 799999999999999864
No 195
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=84.36 E-value=2.3 Score=42.20 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=40.1
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
.+..+..++++.|++..+.++..- .||+|.+ +||+|+|+..+++.-
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~--------~~~~g~~~~~~~~~~ 391 (400)
T PRK10070 346 APLAVDAQTPLSELLSHVGQAPCA-VPVVDED--------QQYVGIISKGMLLRA 391 (400)
T ss_pred CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC--------CcEEEEEEHHHHHHH
Confidence 457899999999999999997755 9999976 489999999999984
No 196
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.29 E-value=2.7 Score=45.88 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=59.8
Q ss_pred CCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCC-CeeEEeehHHHHHHHhhccCCc
Q 022403 199 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-DIKNYITQSAVVQGLEGCKGRD 271 (297)
Q Consensus 199 ~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~-~i~niITQSaVI~~L~~~~g~d 271 (297)
..-.++|.+||-+. ...|.++.|.-+.-+.|....+|..|+||+.+. .+.|.|.++.++.+|..+.|.+
T Consensus 584 ~~h~v~VE~iMV~d----v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTD----VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred ceeEEEeeeecccc----ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence 34568999999988 999999999999988886655999999998655 6799999999999999988853
No 197
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=72.23 E-value=5.5 Score=40.40 Aligned_cols=58 Identities=17% Similarity=0.184 Sum_probs=47.7
Q ss_pred cchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 203 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 203 tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
..|.|||....- .-.+..++++-+-..|-.|.|..|.||||.. -+++|++|--||+.-
T Consensus 188 ~~Vedi~~P~~~--~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~ 245 (432)
T COG4109 188 ITVEDIMTPLED--TSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDK 245 (432)
T ss_pred eeHHHhcccccc--ceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcC
Confidence 568999973211 3556789999999999999999999999985 599999999888753
No 198
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=66.87 E-value=13 Score=37.46 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=44.6
Q ss_pred ccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhc
Q 022403 212 YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 212 ~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~ 267 (297)
.+-.+|.+|.+++.+...+....+. -.-+||||. +++.+|+|+...+++.|+..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~-~~p~aVvde-~~r~vG~i~~~~vl~aL~~~ 385 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQA-PCPVAVVDE-DGRYVGIISRGELLEALARI 385 (386)
T ss_pred cccccccccCccchHHHHHHHHhcC-CCceeEEcC-CCcEEEEecHHHHHHHHhcC
Confidence 4555789999999998888888664 556899998 56999999999999998753
No 199
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=62.56 E-value=7.6 Score=29.19 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCceeEEEcCCCCCeeEEeehH-HHHHHHhhccCC
Q 022403 237 RLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKGR 270 (297)
Q Consensus 237 rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g~ 270 (297)
..++|||+..+ | ..|||| +|+.+|++..|+
T Consensus 48 ~~g~vP~L~~~-g---~~l~ES~AI~~YL~~~~~~ 78 (79)
T cd03077 48 MFQQVPMVEID-G---MKLVQTRAILNYIAGKYNL 78 (79)
T ss_pred CCCCCCEEEEC-C---EEEeeHHHHHHHHHHHcCC
Confidence 47899999643 3 479998 889999887765
No 200
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=58.73 E-value=8.8 Score=37.23 Aligned_cols=69 Identities=9% Similarity=0.181 Sum_probs=58.6
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccCC
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR 270 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g~ 270 (297)
+..-.|||||=.. +-.+++..+.++-+.+..+-.-.-.|.||+..+...|.||.---+++.++....+-
T Consensus 64 iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~ 132 (293)
T COG4535 64 IADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEP 132 (293)
T ss_pred HHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCccc
Confidence 4567899999322 33889999999999999999988899999999988999999999999998776553
No 201
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=57.79 E-value=12 Score=32.42 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=34.9
Q ss_pred eEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccCCc
Q 022403 218 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKGRD 271 (297)
Q Consensus 218 lpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g~d 271 (297)
+.|+... -...=.++..+=.++|||+..+++. +||+| +|+++|++..+..
T Consensus 29 ~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~---~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 29 VLVDLDA-EQKPPDFLALNPLGKVPALVDDDGE---VLTESGAILEYLAERYPGP 79 (211)
T ss_pred EEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCC---eeecHHHHHHHHHhhCCCC
Confidence 4444443 2223345566779999999877655 89998 7899999998743
No 202
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=56.30 E-value=21 Score=28.21 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=48.2
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeE---EEcCCCCCe----eEEeehHHHHHHHhhcc
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVP---IIEPGTPDI----KNYITQSAVVQGLEGCK 268 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvP---VVd~~~~~i----~niITQSaVI~~L~~~~ 268 (297)
+-+.+-.|++.++.. |+.+.-|.+=-+...++.+|+.+.+| ++|+.+|++ .|.++....++.|.+..
T Consensus 38 ~vl~~~~v~~~l~~~----~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 38 DLWSNESVKEFIREN----FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred HHcCCHHHHHHHHhC----EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 346788899999877 88888776535566777778877766 567634554 47888888888876643
No 203
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=51.94 E-value=12 Score=40.53 Aligned_cols=64 Identities=11% Similarity=0.238 Sum_probs=56.3
Q ss_pred CCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCC----CCeeEEeehHHHHHHHhhc
Q 022403 200 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 200 ~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~----~~i~niITQSaVI~~L~~~ 267 (297)
.++-+++|+|.. |.+.++.-...-.....|++.+-+--||||... +.+.|+|=+|.++..|..-
T Consensus 579 mr~L~a~ev~~~----pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~ 646 (762)
T KOG0474|consen 579 MRNLTAGEVMSK----PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKR 646 (762)
T ss_pred hhhhhHhhhccC----CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhh
Confidence 567889999988 799999999999999999999999999999743 4899999999999988653
No 204
>smart00594 UAS UAS domain.
Probab=51.58 E-value=27 Score=28.40 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=44.9
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeE---EEcCCCC--------CeeEEeehHHHHHHH
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVP---IIEPGTP--------DIKNYITQSAVVQGL 264 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvP---VVd~~~~--------~i~niITQSaVI~~L 264 (297)
+-+.+..|.+.++.. |+.+.-|.+=-+...++.+|+++..| ++++.+| .+.|.++...+++.|
T Consensus 48 ~vl~~~~V~~~i~~~----fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 48 DVLCNEAVKSLIREN----FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHccCHHHHHHHHcC----EEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 457899999999887 88877766656777888888888755 6776532 345556666666554
No 205
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=50.69 E-value=25 Score=34.58 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 227 LSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 227 l~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
.+++-.+-..+...+||||.+ |++.|.||+.++++.
T Consensus 273 ~~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~~ 308 (309)
T COG1125 273 RDALSDFLARGRSVLPVVDED-GRPLGTVTRADLLDE 308 (309)
T ss_pred HHHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhhh
Confidence 335555556678889999985 799999999999875
No 206
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=48.57 E-value=18 Score=37.44 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=47.6
Q ss_pred chhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCC--CCCeeEEeehHHHHHHHhhc
Q 022403 204 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGC 267 (297)
Q Consensus 204 kV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~--~~~i~niITQSaVI~~L~~~ 267 (297)
+|+..-..|-.+|. -+.|+.+.-+|+..-.+|+...+||.+.+ ++|++||||-.++ +++.++
T Consensus 106 ~vK~~~~g~~~~p~-v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~~~ 169 (503)
T KOG2550|consen 106 RVKNYENGFINNPI-VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLEDN 169 (503)
T ss_pred HHHHhhcccccCCc-ccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhhcc
Confidence 45555555555553 46799999999999999999999999754 5799999998885 555443
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=48.24 E-value=25 Score=34.59 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHHH
Q 022403 62 ADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILW 110 (297)
Q Consensus 62 ~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~w 110 (297)
...+..+|+.-+...++...||+|.+ ++++|.|.+.+|+..
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~--------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDED--------GRPLGTVTRADLLDE 308 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECCC--------CcEeeEEEHHHHhhh
Confidence 34455668988999999999999998 489999999999863
No 208
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=46.79 E-value=30 Score=34.33 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=35.8
Q ss_pred CcEEecCCCCHHHHHHHHHHCCCcccceecCCCCCCCccccceeEEEehHHHHH
Q 022403 56 RVIEIMADTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIIL 109 (297)
Q Consensus 56 ~VIeI~~d~sI~dAvkiLse~nIlsAPV~D~da~~~~~w~dryiGiVd~~dIv~ 109 (297)
.+..+.+|+++.|++...++.+ ...||+|.. +|+|+|+-.+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~---------~~~g~~~~~~~~~ 377 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTG-GAILLVENG---------RIVGVIGDDNIYH 377 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCC-CCeEEeeCC---------eEEEEEeHHHHHH
Confidence 4667899999999999988875 445666643 9999999988876
No 209
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=40.38 E-value=20 Score=34.01 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=23.5
Q ss_pred CceeEEEcCCCCCeeEEee-------hHHHHHHHhhccC
Q 022403 238 LRNVPIIEPGTPDIKNYIT-------QSAVVQGLEGCKG 269 (297)
Q Consensus 238 l~rvPVVd~~~~~i~niIT-------QSaVI~~L~~~~g 269 (297)
+||.||+|+.+|++.|+.= -..+++.|.+-..
T Consensus 129 vRR~pIi~~~tGEVlG~Ly~gvVLNnNfsLve~l~~~sn 167 (238)
T PF09308_consen 129 VRRTPIIDPKTGEVLGYLYIGVVLNNNFSLVEALRDGSN 167 (238)
T ss_dssp EEEEEEE-TTTSBEEEEEEEEEE-TT-HHHHHHHHHHCT
T ss_pred EeecceeeCCCCeEEEEEEEEEEEcCcHHHHHHHHhhcC
Confidence 7999999999999999763 3466777766544
No 210
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=38.76 E-value=55 Score=22.45 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=27.2
Q ss_pred CceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHH
Q 022403 216 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 263 (297)
Q Consensus 216 PFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~ 263 (297)
+|.-++-+..-...-.++..++.+++|++-.++-.+.|+ +...+-++
T Consensus 26 ~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~-~~~~i~~~ 72 (74)
T TIGR02196 26 AFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGF-DPEKLDQL 72 (74)
T ss_pred eEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeC-CHHHHHHH
Confidence 455555544433444556678999999988764344453 44444433
No 211
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=37.15 E-value=44 Score=23.85 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=22.6
Q ss_pred HhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhcc
Q 022403 233 LSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCK 268 (297)
Q Consensus 233 LsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~ 268 (297)
+..+..++||++..+ | ..|++| +|+++|.+..
T Consensus 43 ~~~~p~~~vP~l~~~-g---~~l~es~aI~~yL~~~~ 75 (76)
T cd03046 43 LAINPLGKVPVLVDG-D---LVLTESAAIILYLAEKY 75 (76)
T ss_pred HhcCCCCCCCEEEEC-C---EEEEcHHHHHHHHHHhC
Confidence 345678899999753 3 368887 7778887643
No 212
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=36.33 E-value=36 Score=24.97 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccC
Q 022403 232 LLSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKG 269 (297)
Q Consensus 232 LLsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g 269 (297)
++..+..+.|||+..+ |. +|+.| +|+++|.+..+
T Consensus 38 ~~~~~p~~~vPvL~~~-g~---~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 38 FLKLNPKGKVPVLVDD-GE---VLTDSAAIIEYLEERYP 72 (75)
T ss_dssp HHHHSTTSBSSEEEET-TE---EEESHHHHHHHHHHHST
T ss_pred HHhhcccccceEEEEC-CE---EEeCHHHHHHHHHHHcC
Confidence 3556788999999954 44 78888 78888887654
No 213
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=31.61 E-value=60 Score=23.50 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred HHhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 232 LLSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 232 LLsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
++..+-.++|||+..+ | ..|++| +|+++|.+
T Consensus 43 ~~~~~p~~~vP~L~~~-~---~~l~eS~aI~~Yl~~ 74 (76)
T cd03050 43 FKKINPFGKVPAIVDG-D---FTLAESVAILRYLAR 74 (76)
T ss_pred HHHhCcCCCCCEEEEC-C---EEEEcHHHHHHHHHh
Confidence 3445779999999753 3 468888 56677764
No 214
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=31.38 E-value=51 Score=24.47 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred HHhhcCC-ceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 232 LLSKYRL-RNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 232 LLsK~rl-~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
.+.++.. ++||+++.++ ...++|| +|+++|++
T Consensus 43 ~~~~~p~~g~vP~l~~~~---~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 43 FLAINPMFGKVPALEDGD---GFVLTESNAILRYLAR 76 (76)
T ss_dssp HHHHTTTSSSSSEEEETT---TEEEESHHHHHHHHHH
T ss_pred hhhcccccceeeEEEECC---CCEEEcHHHHHHHhCC
Confidence 3444556 9999999762 2356777 88888864
No 215
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=31.26 E-value=1.1e+02 Score=21.57 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=21.2
Q ss_pred cCCceeEEEcCCCCCeeEEeehHHHHHHHh
Q 022403 236 YRLRNVPIIEPGTPDIKNYITQSAVVQGLE 265 (297)
Q Consensus 236 ~rl~rvPVVd~~~~~i~niITQSaVI~~L~ 265 (297)
++.+.||++-.++|.+..=.|..++.+.|.
T Consensus 47 ~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 47 NGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 489999999655667666666666666654
No 216
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=28.09 E-value=79 Score=23.03 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=21.0
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
..+-.+++||+..++|. .|++| +|+++|+.
T Consensus 44 ~~nP~~~vP~L~~~~g~---~l~es~aI~~yL~~ 74 (75)
T cd03044 44 KKFPLGKVPAFEGADGF---CLFESNAIAYYVAN 74 (75)
T ss_pred HhCCCCCCCEEEcCCCC---EEeeHHHHHHHHhh
Confidence 34678999999964433 67887 66777653
No 217
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=27.39 E-value=50 Score=25.05 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=19.8
Q ss_pred CCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 237 RLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 237 rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
-.++|||+..+ | .+++|| +|+++|++
T Consensus 54 P~g~vP~L~~~-g---~~l~ES~AIl~YLa~ 80 (82)
T cd03075 54 DFPNLPYYIDG-D---VKLTQSNAILRYIAR 80 (82)
T ss_pred cCCCCCEEEEC-C---EEEeehHHHHHHHhh
Confidence 67899999854 2 478988 78888764
No 218
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=26.89 E-value=69 Score=23.08 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred HhhcCCceeEEEcCCCCCeeEEeehH-HHHHHH
Q 022403 233 LSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGL 264 (297)
Q Consensus 233 LsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L 264 (297)
+..+-.++|||...++ ..|++| +|+++|
T Consensus 44 ~~~nP~~~vP~L~~~~----~~l~eS~aI~~YL 72 (73)
T cd03047 44 LAMNPNGRVPVLEDGD----FVLWESNAILRYL 72 (73)
T ss_pred HhhCCCCCCCEEEECC----EEEECHHHHHHHh
Confidence 3446789999997542 468888 555665
No 219
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=26.70 E-value=78 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.113 Sum_probs=21.2
Q ss_pred HHHhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHh
Q 022403 231 LLLSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLE 265 (297)
Q Consensus 231 lLLsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~ 265 (297)
.++..+-.++||++..+ | ..|++| +|+++|+
T Consensus 42 ~~~~~~p~~~vP~l~~~-~---~~l~es~aI~~yL~ 73 (74)
T cd03045 42 EFLKLNPQHTVPTLVDN-G---FVLWESHAILIYLV 73 (74)
T ss_pred HHHhhCcCCCCCEEEEC-C---EEEEcHHHHHHHHh
Confidence 34456778999999753 2 368887 6666665
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=26.66 E-value=73 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred cCCceeEEEcCCC-CCeeEEeehH-HHHHHHhhccC
Q 022403 236 YRLRNVPIIEPGT-PDIKNYITQS-AVVQGLEGCKG 269 (297)
Q Consensus 236 ~rl~rvPVVd~~~-~~i~niITQS-aVI~~L~~~~g 269 (297)
+..+.||++..++ |.- -.|++| +|+++|.+..|
T Consensus 43 ~~~~~vP~l~~~~~~~~-~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 43 SSYKKVPILRVESGGDG-QQLVDSSVIISTLKTYLG 77 (77)
T ss_pred hCCCccCEEEECCCCCc-cEEEcHHHHHHHHHHHcC
Confidence 5678999997431 111 257776 67788877654
No 221
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=24.70 E-value=96 Score=22.42 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=21.4
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhc
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGC 267 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~ 267 (297)
..+-.+++||+..++|. .+++| +|+++|.+.
T Consensus 44 ~~np~~~vP~l~~~~g~---~l~eS~aI~~yL~~~ 75 (77)
T cd03057 44 AINPKGQVPALVLDDGE---VLTESAAILQYLADL 75 (77)
T ss_pred HhCCCCCCCEEEECCCc---EEEcHHHHHHHHHHh
Confidence 34678999999754332 57777 666887754
No 222
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=24.34 E-value=88 Score=21.81 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=18.9
Q ss_pred HhhcCCceeEEEcCCCCCeeEEeehH-HHHHHH
Q 022403 233 LSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGL 264 (297)
Q Consensus 233 LsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L 264 (297)
...+..+++|++..++|. .+++| +|+++|
T Consensus 44 ~~~~p~~~vP~l~~~~~~---~l~es~aI~~yL 73 (74)
T cd03051 44 LAKNPAGTVPVLELDDGT---VITESVAICRYL 73 (74)
T ss_pred HhhCCCCCCCEEEeCCCC---EEecHHHHHHHh
Confidence 344678999999643333 57887 555655
No 223
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=24.33 E-value=86 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
..+-.++|||+..+ | ..|++| +|+++|.+
T Consensus 46 ~~~P~~~vP~l~~~-g---~~l~es~aI~~yL~~ 75 (76)
T cd03053 46 ARNPFGQIPALEDG-D---LKLFESRAITRYLAE 75 (76)
T ss_pred hhCCCCCCCEEEEC-C---EEEEcHHHHHHHHhh
Confidence 45779999999753 3 368887 67777754
No 224
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=24.03 E-value=1e+02 Score=22.56 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=23.3
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccC
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKG 269 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g 269 (297)
..+-.+.||++..++++ ...|++| +|+++|.+..|
T Consensus 45 ~~~p~~~vP~l~~~~~~-g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 45 KINPNGRIPAIVDHNGT-PLTVFESGAILLYLAEKYD 80 (81)
T ss_pred HhCcCCCCCEEEeCCCC-ceEEEcHHHHHHHHHHHhC
Confidence 34668999999764310 1357776 78888887654
No 225
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=23.55 E-value=80 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=20.3
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
..+..++|||+..+ + ..|+|| +|+++|++
T Consensus 43 ~~~p~~~vP~l~~~-~---~~l~es~aI~~yL~~ 72 (73)
T cd03076 43 PKMLFGQLPCFKDG-D---LTLVQSNAILRHLGR 72 (73)
T ss_pred ccCCCCCCCEEEEC-C---EEEEcHHHHHHHHhc
Confidence 34668999999754 2 368888 66677653
No 226
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=22.58 E-value=94 Score=26.50 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=24.6
Q ss_pred HhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccC
Q 022403 233 LSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKG 269 (297)
Q Consensus 233 LsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g 269 (297)
...+-.++||++.. +| .+||+| +|+++|....+
T Consensus 44 ~~~nP~g~vP~L~~-~g---~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 44 LALNPQGLVPTLDI-DG---EVLTQSLAIIEYLEETYP 77 (210)
T ss_pred hhcCCCCcCCEEEE-CC---EEeecHHHHHHHHHHhCC
Confidence 34577999999985 33 478888 66699987764
No 227
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=22.52 E-value=1e+02 Score=31.69 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=59.4
Q ss_pred CCCCccchhhHhhhccCCCceEecCCCCHHHHHHHHhhcCCceeEEEcCCCCCeeEEeehHHHHHHHhhccC
Q 022403 198 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG 269 (297)
Q Consensus 198 e~~k~tkV~dI~~s~rwaPFlpV~~~~sll~vllLLsK~rl~rvPVVd~~~~~i~niITQSaVI~~L~~~~g 269 (297)
=.+.+.+|.|||.. ++-...++-|++.-.+++-+..---.|+||-..+-..|+|++---+.++.|.++..
T Consensus 195 LDLe~~tV~DIMvp--R~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~ 264 (423)
T COG4536 195 LDLENLTVSDIMVP--RNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE 264 (423)
T ss_pred cccccceeeeeecc--ccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc
Confidence 34678899999853 35589999999999999988877789999998776679999999999999998874
No 228
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=21.64 E-value=88 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCCCCCcEEecCCCCHHHHHHHHHHCCC
Q 022403 51 NVPGGRVIEIMADTTIPDAVKILSECNI 78 (297)
Q Consensus 51 ~~~~~~VIeI~~d~sI~dAvkiLse~nI 78 (297)
.+.+++.|.|..++|..|+.+.|.++|=
T Consensus 10 ~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h 37 (85)
T cd01787 10 EDGASKSLEVDERMTARDVCQLLVDKNH 37 (85)
T ss_pred cCCCeeEEEEcCCCcHHHHHHHHHHHhC
Confidence 3457899999999999999999998854
No 229
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=21.35 E-value=1.4e+02 Score=24.05 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=25.7
Q ss_pred cCCCCCCCCcEEecCCCCHHHHH-HHHHHCCCc
Q 022403 48 SFPNVPGGRVIEIMADTTIPDAV-KILSECNIL 79 (297)
Q Consensus 48 SfP~~~~~~VIeI~~d~sI~dAv-kiLse~nIl 79 (297)
.+|+. ..-++++.+.+|+.||. |.|...|+.
T Consensus 5 ~LPnq-QrT~V~vrpG~tl~daL~KaLk~R~l~ 36 (74)
T cd01816 5 FLPNK-QRTVVNVRPGMTLRDALAKALKVRGLQ 36 (74)
T ss_pred ECCCC-CeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 36775 67899999999999996 678888875
No 230
>PRK10542 glutathionine S-transferase; Provisional
Probab=21.29 E-value=1.1e+02 Score=25.99 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=22.1
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhcc
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCK 268 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~ 268 (297)
..+-.++|||.+.++|. +|++| +|+++|.+-.
T Consensus 45 ~~nP~g~vPvL~~~~g~---~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 45 AINPKGQVPALLLDDGT---LLTEGVAIMQYLADSV 77 (201)
T ss_pred HhCcCCCCCeEEeCCCc---EeecHHHHHHHHHHhC
Confidence 34568999999743432 67887 7778887543
No 231
>PLN02473 glutathione S-transferase
Probab=20.66 E-value=1e+02 Score=26.51 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHhhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhccC
Q 022403 232 LLSKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCKG 269 (297)
Q Consensus 232 LLsK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~g 269 (297)
.+.++-+++|||...+ | ..||+| +|+++|.+..+
T Consensus 45 ~~~~nP~g~vP~L~~~-g---~~l~ES~aI~~YL~~~~~ 79 (214)
T PLN02473 45 HLLRQPFGQVPAIEDG-D---LKLFESRAIARYYATKYA 79 (214)
T ss_pred HHhhCCCCCCCeEEEC-C---EEEEehHHHHHHHHHHcC
Confidence 3346779999999753 2 488888 77788987754
No 232
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=20.63 E-value=1.3e+02 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=19.7
Q ss_pred hcCCceeEEEcCCCCCeeEEeehH-HHHHHHhh
Q 022403 235 KYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEG 266 (297)
Q Consensus 235 K~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~ 266 (297)
.+..+.|||+..++ ..+++| +|+++|.+
T Consensus 43 ~~p~~~vP~l~~~~----~~l~es~aI~~yL~~ 71 (73)
T cd03059 43 LNPYGTVPTLVDRD----LVLYESRIIMEYLDE 71 (73)
T ss_pred hCCCCCCCEEEECC----EEEEcHHHHHHHHHh
Confidence 35688999997542 467766 77777765
No 233
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=20.46 E-value=98 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.1
Q ss_pred HHHhhcCCceeEEEcCCCCCeeEEeehHHHH
Q 022403 231 LLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 261 (297)
Q Consensus 231 lLLsK~rl~rvPVVd~~~~~i~niITQSaVI 261 (297)
.++..+..+.|||+..++|. .|++|..|
T Consensus 39 ~~~~~np~~~vP~L~~~~g~---~l~eS~aI 66 (71)
T cd03060 39 EMLAASPKGTVPVLVLGNGT---VIEESLDI 66 (71)
T ss_pred HHHHHCCCCCCCEEEECCCc---EEecHHHH
Confidence 34456789999999865444 47887544
No 234
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=20.34 E-value=99 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred hhcCCceeEEEcCCCCCeeEEeehH-HHHHHHhhcc
Q 022403 234 SKYRLRNVPIIEPGTPDIKNYITQS-AVVQGLEGCK 268 (297)
Q Consensus 234 sK~rl~rvPVVd~~~~~i~niITQS-aVI~~L~~~~ 268 (297)
..+..+.|||+..+ | ..|++| +|+++|.+-.
T Consensus 43 ~~~p~g~vPvl~~~-g---~~l~eS~~I~~yL~~~~ 74 (75)
T cd03080 43 KRSPKGKLPFIELN-G---EKIADSELIIDHLEEKY 74 (75)
T ss_pred cCCCCCCCCEEEEC-C---EEEcCHHHHHHHHHHHc
Confidence 34568999999864 3 368888 5577777644
Done!