BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022404
         (297 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LW00|MBD11_ARATH Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis
           thaliana GN=MBD11 PE=1 SV=1
          Length = 254

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 83/107 (77%), Gaps = 1/107 (0%)

Query: 9   EEQVSFELPAPFGWKKKIVPRKGGTPKKSEIVFTAPTGEEISNKKQLEQYLKAHPGGPAS 68
           EE VS ELPAP  WKK   P K G+ KK+E+VF APTGEEISN+KQLEQYLK+HPG PA 
Sbjct: 5   EEVVSVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAI 64

Query: 69  SEFDWGTGETPRRSARISEKAKISPAADNEPPKKRGR-KSSASKKDG 114
           +EFDW T  TPRRSARISEK K +P+ D EPPKKRGR KS  SKKD 
Sbjct: 65  AEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGRTKSPVSKKDA 111


>sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis
           thaliana GN=MBD10 PE=1 SV=1
          Length = 384

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 83/106 (78%), Gaps = 2/106 (1%)

Query: 9   EEQVSFELPAPFGWKKKIVPRKGGTPKKSEIVFTAPTGEEISNKKQLEQYLKAHPGGPAS 68
           +E VS ELPAP  WKK   P++ GTP+K+EIVF APTGEEIS++KQLEQYLKAHPG P  
Sbjct: 5   DELVSIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVI 64

Query: 69  SEFDWGTGETPRRSARISEKAK-ISPAADNEPPKKRGRKSSASKKD 113
           SEF+W TGETPRRS+RIS+K K  +P  D EP  K+ R+SS +KKD
Sbjct: 65  SEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKK-RRSSLTKKD 109


>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
            (isolate 3D7) GN=PF11_0240 PE=3 SV=1
          Length = 5251

 Score = 40.4 bits (93), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 123  STEETKEVEMKEAEKTEDNAKVEKEEDIVKESRDENEVDQGPDTKTEAGPSGEAKVGEDA 182
            +TE+ K +E+     TED   VEK       + DE  V++  + +     + E +   + 
Sbjct: 4104 NTEDEKAIEIN----TEDEKAVEKN------TEDEKAVEKNTEDEKAIEKNTEDEKAVEK 4153

Query: 183  NKSTDAEESKKTEAEPGNLKETQDGTQADSSGVTQDKAGIEGAKNEEKVDQPQVETQKEF 242
            N   +    K TE E    K T+D    + +  T+D+  +E    +EKV +   E +K  
Sbjct: 4154 NTEDEKAVEKNTEDEKAIEKNTEDEKAVEKN--TEDEKAVEQNTEDEKVVEENTEDEKAV 4211

Query: 243  GSGEQDKADPAAAEEETKQKTNRSAPEAEELKEKGAVNGSGEELNSVNQISR 294
               E++  D  A E+ T+   +    E +   EKG    + EE   + ++ +
Sbjct: 4212 ---EKNTEDEKAVEKNTE---DEKVVEEKIEDEKGEEQKAEEENVGIEEVEK 4257



 Score = 39.7 bits (91), Expect = 0.029,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 20/155 (12%)

Query: 87   EKAKISPAADNEPPKKRGRKSSASKKDGREAENAPESTEETKEVEMKEAEKTEDNAKVEK 146
            EKA      D +  +K      A +K+  + +   ++TE+ K VE    + TED   +EK
Sbjct: 4118 EKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVE----KNTEDEKAIEK 4173

Query: 147  ----EEDIVKESRDENEVDQGPDTKTEAGPSGEAKVGEDANKSTDAEESKKTEAEPGNLK 202
                E+ + K + DE  V+Q  +         + KV E+  +   A E K TE E    K
Sbjct: 4174 NTEDEKAVEKNTEDEKAVEQNTE---------DEKVVEENTEDEKAVE-KNTEDEKAVEK 4223

Query: 203  ETQDGTQADSSGVTQDKAGIEGAKNEEKVDQPQVE 237
             T+D    +     +D+ G E    EE V   +VE
Sbjct: 4224 NTEDEKVVEEK--IEDEKGEEQKAEEENVGIEEVE 4256


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.296    0.118    0.313 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,753,319
Number of Sequences: 539616
Number of extensions: 5742452
Number of successful extensions: 40204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 3086
Number of HSP's that attempted gapping in prelim test: 22439
Number of HSP's gapped (non-prelim): 12491
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 61 (28.1 bits)