Query 022404
Match_columns 297
No_of_seqs 37 out of 39
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 04:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ub1_A MECP2, attachment regio 99.6 8.1E-16 2.8E-20 128.6 7.6 82 16-97 36-122 (133)
2 3c2i_A Methyl-CPG-binding prot 99.5 4.7E-15 1.6E-19 118.2 5.2 69 15-83 21-91 (97)
3 2ky8_A Methyl-CPG-binding doma 99.5 4.4E-14 1.5E-18 106.4 5.3 62 13-77 7-70 (72)
4 3vxv_A Methyl-CPG-binding doma 99.3 1.2E-12 4.1E-17 98.1 5.1 61 16-76 4-66 (69)
5 1d9n_A Methyl-CPG-binding prot 99.3 1.7E-12 5.9E-17 98.8 5.9 63 13-78 5-69 (75)
6 2jv4_A Peptidyl-prolyl CIS/tra 57.9 13 0.00044 26.2 4.0 43 16-62 6-53 (54)
7 2v0f_A Chromodomain-helicase-D 43.5 9.7 0.00033 29.9 1.6 21 45-65 31-51 (87)
8 1yw5_A Peptidyl prolyl CIS/tra 42.2 11 0.00038 30.8 1.9 45 18-65 8-56 (177)
9 2dl6_A Chromodomain-helicase-D 34.0 15 0.00052 28.5 1.4 26 47-74 34-59 (83)
10 2ckc_A Chromodomain-helicase-D 33.1 23 0.0008 27.7 2.3 19 46-64 40-58 (80)
11 2fwh_A Thiol:disulfide interch 28.5 43 0.0015 24.4 3.0 33 31-66 90-130 (134)
12 2dvz_A BUGE, putative exported 26.6 44 0.0015 29.5 3.3 43 38-82 116-158 (314)
13 2zpm_A Regulator of sigma E pr 26.5 43 0.0015 23.2 2.6 30 37-67 25-54 (91)
14 2cka_A Chromodomain-helicase-D 25.0 38 0.0013 26.9 2.3 18 48-65 61-78 (95)
15 2qpq_A Protein BUG27; alpha/be 24.3 30 0.001 30.1 1.8 32 38-69 103-134 (301)
16 1hko_A Cytochrome B5; electron 21.7 17 0.00059 28.2 -0.3 13 55-67 36-48 (104)
17 2nrk_A Hypothetical protein GR 21.6 51 0.0017 27.3 2.5 43 21-64 85-129 (173)
18 2f5x_A BUGD; periplasmic bindi 21.3 36 0.0012 30.0 1.7 33 37-69 111-143 (312)
19 1cxy_A Cytochrome B5; helix, b 20.6 14 0.00049 27.5 -0.9 13 55-67 35-47 (90)
20 2keo_A Probable E3 ubiquitin-p 20.6 34 0.0012 27.0 1.2 13 55-67 51-63 (112)
21 2dlx_A UBX domain-containing p 20.4 69 0.0024 25.6 3.0 29 31-62 100-138 (153)
No 1
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=99.61 E-value=8.1e-16 Score=128.56 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=74.8
Q ss_pred ccCCCCCccccccCCCC-CCCcceEEEecCCchhhcchHHHHHHHHhCCC-CCCccccccCC---CCCCcchhhhhcccc
Q 022404 16 LPAPFGWKKKIVPRKGG-TPKKSEIVFTAPTGEEISNKKQLEQYLKAHPG-GPASSEFDWGT---GETPRRSARISEKAK 90 (297)
Q Consensus 16 LPAP~GWkKk~~pkkgG-TPkK~eIvFvAPtGEEI~~krqLe~YLKahpG-gp~~seFdWgT---geTPRRSaRiseK~K 90 (297)
-+.|.||++.+..++.| +..+.||.|++|+|..|+|+.+|.+||..||+ ++.+++|||+. +.++||+.|++.++|
T Consensus 36 ~~LP~GWkRe~~~RksG~Sagk~DVYY~SP~GKkfRSk~Ev~ryL~~~~~~~~~~e~FdF~~~gk~~~s~R~~r~~k~~k 115 (133)
T 1ub1_A 36 PTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQRPPKKAK 115 (133)
T ss_dssp CCBTTBCEEEEEECCCSSSCCSEEEEEECTTSCEESSHHHHHHHHTTSCCCSCCGGGCCCCCCCCSCSSCCCCCCCCCCC
T ss_pred CCCCCCCEEEEEEecCCCCCCceeEEEECCCCCeeeCHHHHHHHHHHCCccCCCHhHCccccCCCCCCcccccCCCCCCC
Confidence 45789999999999988 88999999999999999999999999999998 79999999983 478999999999999
Q ss_pred CCCCCCC
Q 022404 91 ISPAADN 97 (297)
Q Consensus 91 at~~~e~ 97 (297)
+++++.+
T Consensus 116 ~~~~~~~ 122 (133)
T 1ub1_A 116 SPKSPGS 122 (133)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9877654
No 2
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=99.53 E-value=4.7e-15 Score=118.21 Aligned_cols=69 Identities=23% Similarity=0.455 Sum_probs=59.6
Q ss_pred eccCCCCCccccccCCCC-CCCcceEEEecCCchhhcchHHHHHHHHhCCC-CCCccccccCCCCCCcchh
Q 022404 15 ELPAPFGWKKKIVPRKGG-TPKKSEIVFTAPTGEEISNKKQLEQYLKAHPG-GPASSEFDWGTGETPRRSA 83 (297)
Q Consensus 15 eLPAP~GWkKk~~pkkgG-TPkK~eIvFvAPtGEEI~~krqLe~YLKahpG-gp~~seFdWgTgeTPRRSa 83 (297)
.-|.|.||++.+.+++.| |..+.||.|++|+|..|+|+.+|.+||.+||. ++.+++|||+++.++++|.
T Consensus 21 ~~~lP~GW~re~~~R~~G~s~gk~DvYY~sP~GkkfRSk~ev~ryL~~~g~~~~~~~~FdF~~~~~~~~~~ 91 (97)
T 3c2i_A 21 DPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIMYFEKVGDTSLDPNDFDFTVTGRGSPSR 91 (97)
T ss_dssp CTTSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHTCCSSCTTTCCCCSSCC-----
T ss_pred CCCCCCCCEEEEEEecCCCCCCcceEEEECCCCCEEECHHHHHHHHHHCCCCCCCHhhccccCCCcCcccc
Confidence 346889999999999987 67899999999999999999999999999987 6999999999999999874
No 3
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=99.46 E-value=4.4e-14 Score=106.41 Aligned_cols=62 Identities=40% Similarity=0.699 Sum_probs=56.9
Q ss_pred eeeccC-CCCCccccccCCCC-CCCcceEEEecCCchhhcchHHHHHHHHhCCCCCCccccccCCCC
Q 022404 13 SFELPA-PFGWKKKIVPRKGG-TPKKSEIVFTAPTGEEISNKKQLEQYLKAHPGGPASSEFDWGTGE 77 (297)
Q Consensus 13 s~eLPA-P~GWkKk~~pkkgG-TPkK~eIvFvAPtGEEI~~krqLe~YLKahpGgp~~seFdWgTge 77 (297)
.+++|+ |.||++.+.+++.| ++.+.+|+|++|+|..|+|+.+|.+||.. ++.+++|||++|.
T Consensus 7 ~~~~p~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP~Gkr~RS~~ev~~YL~~---~l~~~~FdF~~~~ 70 (72)
T 2ky8_A 7 RTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGN---AVDLSCFDFRTGK 70 (72)
T ss_dssp EEECSSSCTTCEEEEEECCSSTTTTCEEEEEECTTCCEEESHHHHHHHHTT---SSCCTTCBTTTTB
T ss_pred cccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCEeEcHHHHHHHHhc---CCChhhcCCCCCC
Confidence 467887 79999999999966 68999999999999999999999999988 6999999999985
No 4
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=99.32 E-value=1.2e-12 Score=98.10 Aligned_cols=61 Identities=25% Similarity=0.514 Sum_probs=56.2
Q ss_pred ccCCCCCccccccCCCCC-CCcceEEEecCCchhhcchHHHHHHHHhCCC-CCCccccccCCC
Q 022404 16 LPAPFGWKKKIVPRKGGT-PKKSEIVFTAPTGEEISNKKQLEQYLKAHPG-GPASSEFDWGTG 76 (297)
Q Consensus 16 LPAP~GWkKk~~pkkgGT-PkK~eIvFvAPtGEEI~~krqLe~YLKahpG-gp~~seFdWgTg 76 (297)
-|.|.||++.+..++.|+ .-|.+|.|++|+|..|+|+.+|.+||..||. ++.+++|||.+.
T Consensus 4 ~plp~GW~R~~~~R~~G~s~gk~DvyY~sP~Gkk~RSk~ev~~yL~~~~~~~l~~~~FdF~~p 66 (69)
T 3vxv_A 4 KPVPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSKRSLANYLLKNGETFLKPEDFNFTVL 66 (69)
T ss_dssp CCSCTTCEEEEEECCSSTTTTCEEEEEECTTSCEECSHHHHHHHHHHHCCCCCCGGGSCCCCC
T ss_pred CcCCCCCEEEEEEeccCCCCCcceEEEEcCCCCEeeCHHHHHHHHHhCCCCCCCHHHcceeCC
Confidence 488999999999998774 4688999999999999999999999999998 699999999875
No 5
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=99.32 E-value=1.7e-12 Score=98.79 Aligned_cols=63 Identities=35% Similarity=0.632 Sum_probs=56.7
Q ss_pred eeeccC-CCCCccccccCCCCCC-CcceEEEecCCchhhcchHHHHHHHHhCCCCCCccccccCCCCC
Q 022404 13 SFELPA-PFGWKKKIVPRKGGTP-KKSEIVFTAPTGEEISNKKQLEQYLKAHPGGPASSEFDWGTGET 78 (297)
Q Consensus 13 s~eLPA-P~GWkKk~~pkkgGTP-kK~eIvFvAPtGEEI~~krqLe~YLKahpGgp~~seFdWgTgeT 78 (297)
+++.|. |.||++.+.+++.|+. .+.+|.|++|+|..|+|+.+|.+||. + ++.++.|||++|.+
T Consensus 5 ~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~RS~~ev~ryL~--~-~~~~~~FdF~~gk~ 69 (75)
T 1d9n_A 5 WLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLG--P-ACDLTLFDFKQGIL 69 (75)
T ss_dssp CEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEECSTHHHHHHHC--T-TCCCTTCCTTTCCC
T ss_pred cccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeeecHHHHHHHhc--c-CCCccccCCCCCCc
Confidence 456666 6999999999999876 79999999999999999999999996 3 79999999999976
No 6
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=57.92 E-value=13 Score=26.16 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=27.4
Q ss_pred ccCCCCCccccccCCCCCC-----CcceEEEecCCchhhcchHHHHHHHHhC
Q 022404 16 LPAPFGWKKKIVPRKGGTP-----KKSEIVFTAPTGEEISNKKQLEQYLKAH 62 (297)
Q Consensus 16 LPAP~GWkKk~~pkkgGTP-----kK~eIvFvAPtGEEI~~krqLe~YLKah 62 (297)
.+-|+||...+.+..|. + .-++-...-|++ ....+|.+|+.+|
T Consensus 6 ~~LP~GW~~~~~~~~Gr-~YY~N~~T~~sqWe~P~~---~~~~~l~~~~~~~ 53 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNL-PYYFNPATRESRWEPPAD---TDMETLKMYMATY 53 (54)
T ss_dssp CCCCSSCCEEECSSSSC-EEEEETTTTEEESSCCTT---SCHHHHHHHHCSC
T ss_pred CCCCCCcEEEEECCCCC-EEEEECCCCcEEecCCCC---ccHHHHHHHHHhc
Confidence 45789999888765543 1 112223334554 4779999999876
No 7
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=43.47 E-value=9.7 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.2
Q ss_pred CchhhcchHHHHHHHHhCCCC
Q 022404 45 TGEEISNKKQLEQYLKAHPGG 65 (297)
Q Consensus 45 tGEEI~~krqLe~YLKahpGg 65 (297)
+|..--..++|.+||+.||+-
T Consensus 31 ~G~~AP~l~~L~~WL~~nP~y 51 (87)
T 2v0f_A 31 GGAMAPPMKDLPRWLEENPEF 51 (87)
T ss_dssp CSSSSCBGGGHHHHHHHCTTE
T ss_pred cCCcCchhHHHHHHHHHCCCc
Confidence 355667789999999999964
No 8
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=42.18 E-value=11 Score=30.79 Aligned_cols=45 Identities=18% Similarity=0.434 Sum_probs=35.5
Q ss_pred CCCCCccccccCCCC----CCCcceEEEecCCchhhcchHHHHHHHHhCCCC
Q 022404 18 APFGWKKKIVPRKGG----TPKKSEIVFTAPTGEEISNKKQLEQYLKAHPGG 65 (297)
Q Consensus 18 AP~GWkKk~~pkkgG----TPkK~eIvFvAPtGEEI~~krqLe~YLKahpGg 65 (297)
-|+||.+.+...++. .|-+.++.+..|.+ -+-.+|.+|+..|+..
T Consensus 8 lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~---vs~~ei~~yy~~~~~~ 56 (177)
T 1yw5_A 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG---TDKEVLNAYIAKFKNN 56 (177)
T ss_dssp CCTTEEEEECSSTTCEEEEETTTCCEESSCCTT---CCHHHHHHHHHHHHHT
T ss_pred CCchHHHHhcccCCchhhhhHHHhhHhhcCccc---CCHHHHHHHHHHhHhh
Confidence 479999999988765 35667777777775 4888999999999753
No 9
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=34.02 E-value=15 Score=28.54 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.3
Q ss_pred hhhcchHHHHHHHHhCCCCCCccccccC
Q 022404 47 EEISNKKQLEQYLKAHPGGPASSEFDWG 74 (297)
Q Consensus 47 EEI~~krqLe~YLKahpGgp~~seFdWg 74 (297)
+.---.++|.+||+.||+--.. =.|+
T Consensus 34 ~~AP~~k~L~~WLk~nP~y~vd--P~~~ 59 (83)
T 2dl6_A 34 EDAPRRAELEMWLQGHPEFAVD--PRFL 59 (83)
T ss_dssp GGSCBSTTHHHHHHHCTTSCBC--HHHH
T ss_pred CCchhHhHHHHHHhHCCCCEeC--cchh
Confidence 3444588999999999976444 3454
No 10
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=33.10 E-value=23 Score=27.71 Aligned_cols=19 Identities=42% Similarity=0.782 Sum_probs=16.9
Q ss_pred chhhcchHHHHHHHHhCCC
Q 022404 46 GEEISNKKQLEQYLKAHPG 64 (297)
Q Consensus 46 GEEI~~krqLe~YLKahpG 64 (297)
||.---++.|.+||+.||+
T Consensus 40 Ge~AP~~KdL~dWLrqhP~ 58 (80)
T 2ckc_A 40 GEDAPKNKDLVEWLKLHPT 58 (80)
T ss_dssp TTSSCBHHHHHHHHHHCTT
T ss_pred cccCccccCHHHHHHHCCC
Confidence 6777789999999999996
No 11
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=28.48 E-value=43 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCCCcceEEEecCCchhh--------cchHHHHHHHHhCCCCC
Q 022404 31 GGTPKKSEIVFTAPTGEEI--------SNKKQLEQYLKAHPGGP 66 (297)
Q Consensus 31 gGTPkK~eIvFvAPtGEEI--------~~krqLe~YLKahpGgp 66 (297)
.|+|. ++|+.++|..| .+..+|.++|+.+|+.+
T Consensus 90 ~~~Pt---~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~~ 130 (134)
T 2fwh_A 90 LGLPT---ILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHH 130 (134)
T ss_dssp CSSSE---EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC----
T ss_pred CCCCE---EEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCccc
Confidence 36674 77888999987 36789999999998765
No 12
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=26.58 E-value=44 Score=29.46 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=30.8
Q ss_pred eEEEecCCchhhcchHHHHHHHHhCCCCCCccccccCCCCCCcch
Q 022404 38 EIVFTAPTGEEISNKKQLEQYLKAHPGGPASSEFDWGTGETPRRS 82 (297)
Q Consensus 38 eIvFvAPtGEEI~~krqLe~YLKahpGgp~~seFdWgTgeTPRRS 82 (297)
-.+||++..--|+|-..|..|.|+|||...+... |.|-+..-.
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p~~~~~g~~--g~Gs~~hl~ 158 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSS--GTCGVLHLM 158 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTSTTTCEEEES--CTTSHHHHH
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCCCcEEEeCC--CCCcHHHHH
Confidence 3567777778899999999999999997665532 344444333
No 13
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=26.51 E-value=43 Score=23.22 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=23.6
Q ss_pred ceEEEecCCchhhcchHHHHHHHHhCCCCCC
Q 022404 37 SEIVFTAPTGEEISNKKQLEQYLKAHPGGPA 67 (297)
Q Consensus 37 ~eIvFvAPtGEEI~~krqLe~YLKahpGgp~ 67 (297)
.+++ ++=+|..|.+..+|..+|..++|.+.
T Consensus 25 GD~I-~~ing~~v~~~~~~~~~l~~~~g~~v 54 (91)
T 2zpm_A 25 GDRI-VXVDGQPLTQWVTFVMLVRDNPGXSL 54 (91)
T ss_dssp TCEE-EEETTEECCCHHHHHHHHHHCTTCCE
T ss_pred CCEE-EEECCeEcCCHHHHHHHHhcCCCCeE
Confidence 3443 44589999999999999999987653
No 14
>2cka_A Chromodomain-helicase-DNA-binding protein 8; BRK domain, transcription elongation, chromatin remodeling, protein-protein interaction, transcription; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=25.02 E-value=38 Score=26.88 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.6
Q ss_pred hhcchHHHHHHHHhCCCC
Q 022404 48 EISNKKQLEQYLKAHPGG 65 (297)
Q Consensus 48 EI~~krqLe~YLKahpGg 65 (297)
.---.++|.+||+.||+-
T Consensus 61 ~Ap~~K~L~~WLk~np~y 78 (95)
T 2cka_A 61 DAPRRAELEMWLQGHPEF 78 (95)
T ss_dssp SSCBHHHHHHHHHHCTTE
T ss_pred CCchHhHHHHHHHHCCCC
Confidence 344489999999999975
No 15
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=24.27 E-value=30 Score=30.09 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.3
Q ss_pred eEEEecCCchhhcchHHHHHHHHhCCCCCCcc
Q 022404 38 EIVFTAPTGEEISNKKQLEQYLKAHPGGPASS 69 (297)
Q Consensus 38 eIvFvAPtGEEI~~krqLe~YLKahpGgp~~s 69 (297)
-.+||++.+--|+|-..|..|+|+|||...+.
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak~~p~~~~~g 134 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAKQTNTQVTYG 134 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTCSSSCCCEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCceEEe
Confidence 45677777778999999999999999876554
No 16
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=21.66 E-value=17 Score=28.15 Aligned_cols=13 Identities=46% Similarity=1.076 Sum_probs=11.2
Q ss_pred HHHHHHhCCCCCC
Q 022404 55 LEQYLKAHPGGPA 67 (297)
Q Consensus 55 Le~YLKahpGgp~ 67 (297)
|..||..||||..
T Consensus 36 vT~f~~~HPGG~~ 48 (104)
T 1hko_A 36 LTKFLEEHPGGEE 48 (104)
T ss_dssp HHHHSSSSSSCSH
T ss_pred CCcchhhCcChHH
Confidence 6789999999974
No 17
>2nrk_A Hypothetical protein GRPB; UPF0157, PFAM04229, glutamate-rich protein, enterococcus FAE PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis} SCOP: d.218.1.14
Probab=21.60 E-value=51 Score=27.31 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=27.5
Q ss_pred CCccccccCCCCCCCcceEEEecC-Cc-hhhcchHHHHHHHHhCCC
Q 022404 21 GWKKKIVPRKGGTPKKSEIVFTAP-TG-EEISNKKQLEQYLKAHPG 64 (297)
Q Consensus 21 GWkKk~~pkkgGTPkK~eIvFvAP-tG-EEI~~krqLe~YLKahpG 64 (297)
||....+-.+++ +.+.--+.|.. .+ .++..--.+-.||.+||.
T Consensus 85 ~~~~r~~f~k~~-~~r~~hlHv~~~g~~~~~~~~L~FRDyLr~~p~ 129 (173)
T 2nrk_A 85 GLSGRRYLRKGP-IKRTHHVHIYQFDNTQEILRHLAFRNYLRENPA 129 (173)
T ss_dssp TSTTEEEEEECS-SSCCEEEEEEETTCHHHHHHHHHHHHHHHHCHH
T ss_pred CCCccEEEEcCC-CCceEEEEEEecCChHHHHHHHHHHHHHHhCHH
Confidence 454444444554 44444455444 44 588888889999999983
No 18
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=21.33 E-value=36 Score=29.98 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.6
Q ss_pred ceEEEecCCchhhcchHHHHHHHHhCCCCCCcc
Q 022404 37 SEIVFTAPTGEEISNKKQLEQYLKAHPGGPASS 69 (297)
Q Consensus 37 ~eIvFvAPtGEEI~~krqLe~YLKahpGgp~~s 69 (297)
.-.+||++..--|+|-..|..|+|+|||...+.
T Consensus 111 ~~~~lvv~~ds~~~sl~dL~~~ak~~p~~~~~g 143 (312)
T 2f5x_A 111 VPMTIIARGDFPPNNIKELAEYVKKNADKISLA 143 (312)
T ss_dssp EEEEEEECTTCSCCSHHHHHHHHHHHGGGCEEE
T ss_pred CcEEEEEeCCCCCCCHHHHHHHHHhCCCceEEe
Confidence 345677777788999999999999999876544
No 19
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=20.65 E-value=14 Score=27.51 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.5
Q ss_pred HHHHHHhCCCCCC
Q 022404 55 LEQYLKAHPGGPA 67 (297)
Q Consensus 55 Le~YLKahpGgp~ 67 (297)
|..||..||||..
T Consensus 35 vT~f~~~HPGG~~ 47 (90)
T 1cxy_A 35 LTPYVPNHPGPAG 47 (90)
T ss_dssp CTTTGGGCCSSTT
T ss_pred CccchhhCcChHH
Confidence 4579999999974
No 20
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=20.61 E-value=34 Score=27.05 Aligned_cols=13 Identities=0% Similarity=0.107 Sum_probs=11.3
Q ss_pred HHHHHHhCCCCCC
Q 022404 55 LEQYLKAHPGGPA 67 (297)
Q Consensus 55 Le~YLKahpGgp~ 67 (297)
|..||..||||..
T Consensus 51 VT~fl~~HPGG~~ 63 (112)
T 2keo_A 51 IKDFQTQSLTENS 63 (112)
T ss_dssp HHHHHHHHTSTTS
T ss_pred CCcchhhCCCchh
Confidence 6789999999974
No 21
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=20.37 E-value=69 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.540 Sum_probs=21.7
Q ss_pred CCCCCcceEEEecCC-chhhcc---------hHHHHHHHHhC
Q 022404 31 GGTPKKSEIVFTAPT-GEEISN---------KKQLEQYLKAH 62 (297)
Q Consensus 31 gGTPkK~eIvFvAPt-GEEI~~---------krqLe~YLKah 62 (297)
.|+|. |+|+.|+ |++|.. ..+|.+||..|
T Consensus 100 ~~~P~---~~fld~~~G~~l~~~~g~~~~~fl~~L~~~l~~~ 138 (153)
T 2dlx_A 100 GDFPY---VSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEH 138 (153)
T ss_dssp CSSSE---EEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCCE---EEEEeCCCCcEeeecCCCCHHHHHHHHHHHHHhc
Confidence 47784 9999997 888864 25677777777
Done!