BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022405
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 134/261 (51%), Positives = 174/261 (66%), Gaps = 4/261 (1%)
Query: 31 SFEDNFSIMWSENHFTTSEDGQIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAG 90
+F N+ W+ +H G L LDK TG GFQ+K Y FG FSM++KLV GDSAG
Sbjct: 16 AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 75
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQD 150
VTA+Y+ ++N DE+DFEFLGNRTGQPY++QTN++ G G+RE R LWFDPT++
Sbjct: 76 TVTAFYLSSQNSE---HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKE 132
Query: 151 YHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLE 210
+H YS+LWN + IVF VD VPIRVFKN FP +PM ++SS+WNAD+WATRGGLE
Sbjct: 133 FHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLE 192
Query: 211 KTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDHAWVLR 270
KTDW KAPF++SY+ F +DGC+ C +T WWDQ + L Q +WV +
Sbjct: 193 KTDWSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQ 251
Query: 271 NLVIYDYCKDTERFPTLPVEC 291
IY+YC D R+P++P EC
Sbjct: 252 KYTIYNYCTDRSRYPSMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 147/261 (56%), Gaps = 14/261 (5%)
Query: 32 FEDNFSIMWSENHFTTSEDG-QIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ ++ +W H + IW LD +G GF++ RYR G+F +KL G +AG
Sbjct: 43 FDQGYTNLWGPQHQRVDQGSLTIW---LDSTSGSGFKSINRYRSGYFGANIKLQSGYTAG 99
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQD 150
V+T++Y+ DE+D EFLG G+PY +QTN++ G+G+REMR LWFDPTQD
Sbjct: 100 VITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQD 159
Query: 151 YHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLE 210
YH Y+I W +I+FFVD VPIR + K++ FP +P++++ S+W+A WAT G
Sbjct: 160 YHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFP-LRPLWVYGSVWDASSWATENGKY 216
Query: 211 KTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDHAWVLR 270
K D++ PFV Y+DF + C E + ++ N LS Q WV +
Sbjct: 217 KADYRYQPFVGKYEDFKLGSCTVE-------AASSCNPASVSPYGQLSQQQVAAMEWVQK 269
Query: 271 NLVIYDYCKDTERFPTLPVEC 291
N ++Y+YC D R TL EC
Sbjct: 270 NYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 147/261 (56%), Gaps = 14/261 (5%)
Query: 32 FEDNFSIMWSENHFTTSEDG-QIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ ++ +W H + IW LD +G GF++ RYR G+F +KL G +AG
Sbjct: 20 FDQGYTNLWGPQHQRVDQGSLTIW---LDSTSGSGFKSINRYRSGYFGANIKLQSGYTAG 76
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQD 150
V+T++Y+ DE+D EFLG G+PY +QTN++ G+G+REMR LWFDPTQD
Sbjct: 77 VITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQD 136
Query: 151 YHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLE 210
YH Y+I W +I+FFVD VPIR + K++ FP +P++++ S+W+A WAT G
Sbjct: 137 YHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFP-LRPLWVYGSVWDASSWATENGKY 193
Query: 211 KTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDHAWVLR 270
K D++ PFV Y+DF + C E + ++ N LS Q WV +
Sbjct: 194 KADYRYQPFVGKYEDFKLGSCTVE-------AASSCNPASVSPYGQLSQQQVAAMEWVQK 246
Query: 271 NLVIYDYCKDTERFPTLPVEC 291
N ++Y+YC D R TL EC
Sbjct: 247 NYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 187 bits (475), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 147/266 (55%), Gaps = 19/266 (7%)
Query: 32 FEDNFSIMWSENHFTTSEDG-QIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ ++ +W H + IW LD +G GF++ RYR G+F +KL G +AG
Sbjct: 22 FDQGYTNLWGPQHQRVDQGSLTIW---LDSTSGSGFKSINRYRSGYFGANIKLQSGYTAG 78
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGN-----REMRHMLWF 145
V+T++Y+ DE+D EFLG G+PY +QTN++ G+G+ REMR LWF
Sbjct: 79 VITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWF 138
Query: 146 DPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWAT 205
DPTQDYH Y+I W +I+FFVD VPIR + K++ FP +P++++ S+W+A WAT
Sbjct: 139 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFP-LRPLWVYGSVWDASSWAT 195
Query: 206 RGGLEKTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDH 265
G K D++ PFV Y+DF + C E + ++ N LS Q
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCTVE-------AASSCNPASVSPYGQLSQQQVAAM 248
Query: 266 AWVLRNLVIYDYCKDTERFPTLPVEC 291
WV +N ++Y+YC D R TL EC
Sbjct: 249 EWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 187 bits (474), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/266 (37%), Positives = 147/266 (55%), Gaps = 19/266 (7%)
Query: 32 FEDNFSIMWSENHFTTSEDG-QIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ ++ +W H + IW LD +G GF++ RYR G+F +KL G +AG
Sbjct: 19 FDQGYTNLWGPQHQRVDQGSLTIW---LDSTSGSGFKSINRYRSGYFGANIKLQSGYTAG 75
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGN-----REMRHMLWF 145
V+T++Y+ DE+D EFLG G+PY +QTN++ G+G+ RE+R LWF
Sbjct: 76 VITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWF 135
Query: 146 DPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWAT 205
DPTQDYH Y+I W +I+FFVD VPIR + K++ FP +PM+++ S+W+A WAT
Sbjct: 136 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFP-LRPMWVYGSVWDASSWAT 192
Query: 206 RGGLEKTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDH 265
G K D++ PFV Y+DF + C E + ++ N LS Q
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVE-------AASSCNPASVSPYGQLSQQQVAAM 245
Query: 266 AWVLRNLVIYDYCKDTERFPTLPVEC 291
WV +N ++Y+YC D R TL EC
Sbjct: 246 EWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 40 WSENHFTTSEDGQIWFL----SLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAY 95
W+ +H + + G++ S +K G G Q+ Q Y +G + + +K + G+V+A+
Sbjct: 21 WAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMKPA--KNVGIVSAF 78
Query: 96 YMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYS 155
Y T G DE+D EFLG T + +Q N Y NG GN E L FD YHTY+
Sbjct: 79 YTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYA 135
Query: 156 ILWNNHQIVFFVD 168
W + I ++VD
Sbjct: 136 FDWQPNSIKWYVD 148
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 62 TGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQ 121
G ++T+ ++ +G + +++K + G+V++++ T G DE+D EFLG T +
Sbjct: 80 AGAEYRTRDKFGYGLYQVRMKPA--KNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTTK 137
Query: 122 PYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKA 181
+Q N Y N GN E + L FD ++D+H Y+ W + I + VD + +A
Sbjct: 138 ---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEVY------RA 188
Query: 182 NDFFPNEKPMYLFSSIW---NADEW 203
D P P + +IW DEW
Sbjct: 189 YDDIP-VHPGKIMLNIWPGIGVDEW 212
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 36 FSIMWSENHFTTSEDGQIWF----LSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGV 91
F+ W N+ + DG++ + +K +++ Y +G + + +K + G+
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTGI 85
Query: 92 VTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDY 151
V++++ T G DE+D EFLG T + +Q N Y NG G E L FD ++ +
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 152 HTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNA---DEW 203
HTY+ W I ++VD V K+ AN P P + ++WN D+W
Sbjct: 143 HTYAFDWQPGYIKWYVD----GVLKHTATAN--IP-STPGKIMMNLWNGTGVDDW 190
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 36 FSIMWSENHFTTSEDGQIWFLSLDKET----GCG-FQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ W N+ + + G++ LSL + CG ++ Q Y +G + + +K + G
Sbjct: 30 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMKPA--KNVG 86
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQD 150
+V++++ T G DE+D EFLG T + +Q N Y NG GN E L FD
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 151 YHTYSILWNNHQIVFFVD 168
YHTY+ W + I ++VD
Sbjct: 144 YHTYAFDWQPNSIKWYVD 161
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 36 FSIMWSENHFTTSEDGQIWF----LSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGV 91
F+ W N+ + DG++ + +K +++ Y +G + + +K + G+
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTGI 87
Query: 92 VTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDY 151
V++++ T G DE+D EFLG T + +Q N Y NG G E L FD ++ +
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 152 HTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNA---DEW 203
HTY+ W I ++VD V K+ AN P P + ++WN D+W
Sbjct: 145 HTYAFDWQPGYIKWYVD----GVLKHTATAN--IP-STPGKIMMNLWNGTGVDDW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 11/138 (7%)
Query: 36 FSIMWSENHFTTSEDGQIWFLSLDKET----GCG-FQTKQRYRFGWFSMKLKLVGGDSAG 90
F+ W N+ + + G++ L+L CG ++ Q Y +G + +++K + G
Sbjct: 54 FNCTWRANNVSMTSLGEM-RLALTSPAYNKFDCGENRSVQTYGYGLYEVRMKPA--KNTG 110
Query: 91 VVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQD 150
+V++++ T G DE+D EFLG T + +Q N Y NG GN E L FD
Sbjct: 111 IVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 151 YHTYSILWNNHQIVFFVD 168
YHTY+ W + I ++VD
Sbjct: 168 YHTYAFDWQPNSIKWYVD 185
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 66 FQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLI 125
+++ Y +G + + +K + G+V++++ T G DE+D EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMKPA--KNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFF 185
Q N Y NG G E L FD ++ +HTY+ W I ++VD V K+ AN
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD----GVLKHTATAN--I 114
Query: 186 PNEKPMYLFSSIWNA---DEW 203
P P + ++WN D+W
Sbjct: 115 P-STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 66 FQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLI 125
+++ Y +G + + +K + G+V++++ T G DE+D EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMKPA--KNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFF 185
Q N Y NG G E L FD ++ +HTY+ W I ++VD V K+ AN
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD----GVLKHTATAN--I 114
Query: 186 PNEKPMYLFSSIWNA---DEW 203
P P + ++WN D+W
Sbjct: 115 P-STPGKIMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 36 FSIMWSENHFTTSEDGQIWF----LSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGV 91
F+ W N+ + DG++ + +K +++ Y +G + + +K + G+
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTGI 87
Query: 92 VTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDY 151
V++++ T G D++D +FLG T + +Q N Y NG G E L FD ++ +
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 152 HTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNA---DEW 203
HTY+ W I ++VD V K+ AN P P + ++WN D+W
Sbjct: 145 HTYAFDWQPGYIKWYVD----GVLKHTATAN--IP-STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 66 FQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLI 125
+++ Y +G + + +K + G+V++++ T G DE+D EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMKPA--KNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 126 QTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFF 185
Q N Y NG G E L FD ++ +HTY+ W I ++VD V K+ AN
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD----GVLKHTATAN--I 114
Query: 186 PNEKPMYLFSSIWNA---DEW 203
P P + ++WN D+W
Sbjct: 115 P-STPGKIMMNLWNGTGVDDW 134
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 88 SAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDP 147
+ G+V++++ T G DE+D EFLG T + +Q N Y NG G E L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDA 57
Query: 148 TQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNA---DEW 203
++ +HTY+ W I ++VD V K+ AN P P + ++WN D+W
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVD----GVLKHTATAN--IP-STPGKIMMNLWNGTGVDDW 109
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 36 FSIMWSENHFTTSEDGQIWF----LSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGV 91
F+ W N+ + DG++ + +K +++ Y +G + + +K + G+
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMKPA--KNTGI 175
Query: 92 VTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNG 133
V++++ T G DE+D EFLG T + +Q N Y NG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 135 GNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLF 194
G E L FD ++ +HTY+ W I ++VD V K+ AN P P +
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD----GVLKHTATAN--IP-STPGKIM 54
Query: 195 SSIWNA---DEW 203
++WN D+W
Sbjct: 55 MNLWNGTGVDDW 66
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 14/156 (8%)
Query: 67 QTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTEN---GAG--PTRDELDF-EFLG-NRT 119
+ K + +G F ++ +L G G A +M + G+ P E+D E +G N
Sbjct: 78 RGKASWTYGRFEIRARLPSG--RGTWPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPD 135
Query: 120 GQPYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVD-----RVPIRV 174
+ T Y + G + + D+H Y+I W +I +FVD R P
Sbjct: 136 VVHGTVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNER 195
Query: 175 FKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLE 210
N +P ++P +L +I W + G++
Sbjct: 196 LTNPEADWRHWPFDQPFHLIMNIAVGGTWGGQQGVD 231
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 67 QTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAG---PTRDELDFEFLGNRTGQPY 123
Q K + ++G ++++ G G+ A++M + G P+ E+D + N +P+
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 124 LIQTNI----YKNGTGNREM-RHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPI-RVFKN 177
+ + Y G+G M +H + +HT+++ W +I +FVD RV +
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDGQQFHRVTRA 191
Query: 178 NGKANDFFPNEKPMYLFSSIWNADEW 203
+ AN + ++P +L ++ +W
Sbjct: 192 SVGANAWV-FDQPFFLILNVAVGGQW 216
>pdb|1Q1U|A Chain A, Crystal Structure Of Human Fhf1b (Fgf12b)
Length = 144
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 29 KGSFEDNFSIMWSENHFTTSEDGQIWFLSLDKE 61
K S +N+ +++S + E G+ WFL L+KE
Sbjct: 86 KESVFENYYVIYSSTLYRQQESGRAWFLGLNKE 118
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 67 QTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAG---PTRDELDF-EFLGNRTGQP 122
+ K ++G ++ KL G G+ A +M N PT E+D E LG+ T
Sbjct: 89 EGKFEIKYGKIEIRAKLPKG--KGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 146
Query: 123 Y-LIQTNIYKNGTGNREMRHMLWFDP--TQDYHTYSILWNNHQIVFFVD 168
Y Y G H+ P ++D+H +SI W+ ++ ++VD
Sbjct: 147 YGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVD 195
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 67 QTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAG---PTRDELDF-EFLGNRTGQP 122
+ K ++G ++ KL G G+ A +M N PT E+D E LG+ T
Sbjct: 97 EGKFEIKYGKIEIRAKLPKG--KGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 154
Query: 123 Y-LIQTNIYKNGTGNREMRHMLWFDP--TQDYHTYSILWNNHQIVFFVD 168
Y Y G H+ P ++D+H +SI W+ ++ ++VD
Sbjct: 155 YGTAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVD 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,120,861
Number of Sequences: 62578
Number of extensions: 468307
Number of successful extensions: 742
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 31
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)