Query 022405
Match_columns 297
No_of_seqs 312 out of 1691
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.4E-87 3E-92 624.3 34.8 266 28-296 23-291 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 2.2E-85 4.8E-90 604.9 33.4 262 28-291 2-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.3E-44 2.9E-49 323.2 25.0 176 39-231 13-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 3.3E-38 7.2E-43 282.7 25.0 177 36-229 25-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 4.1E-36 8.9E-41 261.5 20.4 176 34-227 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.1E-33 4.5E-38 248.8 24.1 174 37-228 24-209 (210)
7 cd08023 GH16_laminarinase_like 100.0 2.5E-32 5.4E-37 247.2 22.9 181 38-229 33-235 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 2.9E-32 6.2E-37 251.3 22.0 178 42-229 57-257 (258)
9 cd02177 GH16_kappa_carrageenas 100.0 4E-30 8.7E-35 238.7 21.7 173 42-229 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.3E-29 2.8E-34 238.0 19.3 184 39-229 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 3E-29 6.5E-34 231.3 21.4 185 39-229 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 9.8E-28 2.1E-32 228.7 19.7 140 63-204 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 2.3E-27 5E-32 225.4 17.0 137 63-201 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.6E-25 3.4E-30 214.9 19.4 179 36-225 72-261 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 4.4E-21 9.5E-26 135.6 4.5 48 243-291 3-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 2E-14 4.3E-19 142.5 14.7 190 43-242 161-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.5 4.5E-13 9.7E-18 125.5 12.5 148 49-204 47-251 (293)
18 PF06439 DUF1080: Domain of Un 89.5 4.8 0.0001 34.2 10.4 107 61-178 41-156 (185)
19 PF09264 Sial-lect-inser: Vibr 87.8 0.92 2E-05 40.4 4.7 101 59-175 14-120 (198)
20 smart00210 TSPN Thrombospondin 87.6 11 0.00025 32.7 11.7 88 76-176 55-144 (184)
21 smart00560 LamGL LamG-like jel 87.4 14 0.00031 30.1 14.6 71 147-234 59-131 (133)
22 PF13385 Laminin_G_3: Concanav 85.2 11 0.00024 30.0 9.6 66 147-230 83-148 (157)
23 cd00152 PTX Pentraxins are pla 83.7 12 0.00026 33.0 10.0 74 147-231 88-163 (201)
24 smart00159 PTX Pentraxin / C-r 79.1 46 0.00099 29.5 18.0 75 147-232 88-164 (206)
25 PF10287 DUF2401: Putative TOS 76.4 13 0.00028 34.3 7.7 81 76-161 102-207 (235)
26 PF11948 DUF3465: Protein of u 73.9 18 0.0004 30.4 7.4 43 21-65 15-57 (131)
27 PF09224 DUF1961: Domain of un 60.3 28 0.00061 31.7 6.3 58 150-228 160-218 (218)
28 cd00110 LamG Laminin G domain; 55.1 1.1E+02 0.0023 24.5 15.5 85 73-174 20-105 (151)
29 PF07172 GRP: Glycine rich pro 54.7 11 0.00025 29.8 2.6 19 9-27 7-25 (95)
30 PF00354 Pentaxin: Pentaxin fa 51.2 1.1E+02 0.0024 27.0 8.6 72 147-229 82-155 (195)
31 PRK11372 lysozyme inhibitor; P 45.1 79 0.0017 25.6 6.1 20 3-23 1-20 (109)
32 PF13670 PepSY_2: Peptidase pr 44.3 83 0.0018 23.6 5.9 22 47-68 61-82 (83)
33 PRK02919 oxaloacetate decarbox 42.4 18 0.00039 28.0 1.8 23 1-23 14-37 (82)
34 PRK02710 plastocyanin; Provisi 41.4 64 0.0014 26.1 5.1 18 39-57 43-60 (119)
35 KOG1691 emp24/gp25L/p24 family 40.3 1.7E+02 0.0038 26.6 8.1 59 53-116 61-120 (210)
36 PF14099 Polysacc_lyase: Polys 33.7 3.3E+02 0.0071 23.9 11.6 71 146-228 149-224 (224)
37 smart00282 LamG Laminin G doma 33.3 1.9E+02 0.0042 22.9 6.8 27 148-174 61-87 (135)
38 KOG4352 Fas-mediated apoptosis 31.5 87 0.0019 27.2 4.5 37 138-175 92-128 (187)
39 PF13473 Cupredoxin_1: Cupredo 30.4 1.4E+02 0.0031 23.1 5.4 22 39-61 31-52 (104)
40 KOG1834 Calsyntenin [Extracell 29.8 61 0.0013 34.5 3.8 52 148-204 441-492 (952)
41 PF04202 Mfp-3: Foot protein 3 27.5 70 0.0015 23.9 2.8 36 7-44 5-40 (71)
42 PF02210 Laminin_G_2: Laminin 27.2 2.8E+02 0.0061 21.1 8.9 74 148-229 53-126 (128)
43 cd00070 GLECT Galectin/galacto 25.7 2E+02 0.0044 23.2 5.7 47 130-177 58-105 (127)
44 COG3630 OadG Na+-transporting 23.2 56 0.0012 25.5 1.7 9 1-9 14-22 (84)
45 cd06526 metazoan_ACD Alpha-cry 22.2 1.7E+02 0.0037 21.7 4.3 45 39-86 17-61 (83)
46 PF05984 Cytomega_UL20A: Cytom 21.2 1.8E+02 0.0039 22.8 4.1 22 5-26 1-22 (100)
47 TIGR01195 oadG_fam sodium pump 20.9 68 0.0015 24.7 1.8 20 1-20 11-31 (82)
48 PF07691 PA14: PA14 domain; I 20.8 1.4E+02 0.003 23.9 3.8 29 147-176 57-85 (145)
49 PF06832 BiPBP_C: Penicillin-B 20.7 1.2E+02 0.0025 22.9 3.1 36 162-199 44-79 (89)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.4e-87 Score=624.26 Aligned_cols=266 Identities=43% Similarity=0.878 Sum_probs=248.3
Q ss_pred ccccccccccccccCCceEEeCCCcEEEEEecCCCcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCC
Q 022405 28 SKGSFEDNFSIMWSENHFTTSEDGQIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTR 107 (297)
Q Consensus 28 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~ 107 (297)
+..+|.++|.++|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++. ++.|
T Consensus 23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~---~~~~ 99 (291)
T PLN03161 23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSST---GSRH 99 (291)
T ss_pred ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCC---CCCC
Confidence 4567999999999999999988888899999999999999999999999999999999888999999999986 4589
Q ss_pred ceeeEEecCCCCCCccEEEeeEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCC
Q 022405 108 DELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPN 187 (297)
Q Consensus 108 dEIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 187 (297)
|||||||||+++++|+++|||+|.+|.++|++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..|.+||+
T Consensus 100 dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~ 179 (291)
T PLN03161 100 DEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPN 179 (291)
T ss_pred CeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777889998
Q ss_pred CCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEEEEeecCCC--CCCCCCCCCcccccccCCCCCCHHHHHHH
Q 022405 188 EKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSVDGCQWEDP--YPECVSTTTKNWWDQYDAWHLSDSQKLDH 265 (297)
Q Consensus 188 ~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~--~~~C~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (297)
++||+|++|||+|++|||+||++||||+++||+|.|++|++++|..+++ ...|...+...||+++.|++|+++|+++|
T Consensus 180 ~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (291)
T PLN03161 180 KQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQM 259 (291)
T ss_pred ccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999987653 34697432467999999999999999999
Q ss_pred HHHHhCCeeEecccCCCCCCC-CCCCCCCCCC
Q 022405 266 AWVLRNLVIYDYCKDTERFPT-LPVECSLSPW 296 (297)
Q Consensus 266 ~~~~~~~~~y~yc~d~~r~~~-~~~ec~~~~~ 296 (297)
+|||+||||||||+|++|||+ +||||.+++|
T Consensus 260 ~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~~ 291 (291)
T PLN03161 260 KKVRDNFMIYDYCKDTKRFNGVMPPECFKPQF 291 (291)
T ss_pred HHHHhCcEEEeccCCCCcCCCCcCcccCCCcC
Confidence 999999999999999999998 8999999875
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=2.2e-85 Score=604.92 Aligned_cols=262 Identities=50% Similarity=0.996 Sum_probs=246.5
Q ss_pred ccccccccccccccCCceEEeCCCcEEEEEecCCCcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCC
Q 022405 28 SKGSFEDNFSIMWSENHFTTSEDGQIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTR 107 (297)
Q Consensus 28 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~ 107 (297)
.+.+|.++|.++|+++|+++.++|+.|+|+||+++|++|+||..|+||+||||||||+|+++|+||||||++++ |+.+
T Consensus 2 ~~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~ 79 (263)
T cd02176 2 VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNH 79 (263)
T ss_pred CcCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCC
Confidence 35679999999999999999888889999999999999999999999999999999998889999999999985 7899
Q ss_pred ceeeEEecCCCCCCccEEEeeEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCC
Q 022405 108 DELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPN 187 (297)
Q Consensus 108 dEIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 187 (297)
+|||||+||+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+
T Consensus 80 ~EID~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 159 (263)
T cd02176 80 DEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPS 159 (263)
T ss_pred CeEEEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777889997
Q ss_pred CCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEEEEeecCCCCCCCCCCCCcccccccCCCCCCHHHHHHHHH
Q 022405 188 EKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSVDGCQWEDPYPECVSTTTKNWWDQYDAWHLSDSQKLDHAW 267 (297)
Q Consensus 188 ~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~C~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (297)
++||+|++|||+||+|||+||++|+||+++||+|.|++|+|++|..++....|.......||+.+.+++|+++|+++|+|
T Consensus 160 ~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 239 (263)
T cd02176 160 SQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEW 239 (263)
T ss_pred cceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999987665567532225799999999999999999999
Q ss_pred HHhCCeeEecccCCCCCCCCCCCC
Q 022405 268 VLRNLVIYDYCKDTERFPTLPVEC 291 (297)
Q Consensus 268 ~~~~~~~y~yc~d~~r~~~~~~ec 291 (297)
||+||||||||+|++|||.+||||
T Consensus 240 ~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 240 VRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHCCEEEecCCCCCcCCCCcCCC
Confidence 999999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.3e-44 Score=323.18 Aligned_cols=176 Identities=27% Similarity=0.526 Sum_probs=153.6
Q ss_pred cccCCceEEeCCCcEEEEEecCC-CcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCceeeEEecCC
Q 022405 39 MWSENHFTTSEDGQIWFLSLDKE-TGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGN 117 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~-sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dEIDiE~lGn 117 (297)
+...++|.+..+| |.|+|++. +|++|.|++.|+|||||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 13 ~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~-----~~gEIDIE~~G~ 83 (203)
T cd02183 13 TVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD-----DLDEIDWEWVGG 83 (203)
T ss_pred EecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC-----CCCEEEEEecCC
Confidence 4567888886434 99999877 7999999999999999999999988 899999999987 479999999996
Q ss_pred CCCCccEEEeeEEeCCCC---CcceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCC-CCCCCCCCCceEE
Q 022405 118 RTGQPYLIQTNIYKNGTG---NREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGK-ANDFFPNEKPMYL 193 (297)
Q Consensus 118 ~~g~p~~~qTNv~~~G~g---~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~~Pm~l 193 (297)
+ |..+|+|+|.+|.. ++++.+.++++++++||+|+|+|+|++|+|||||+++|++++.+. .+..|| ++||+|
T Consensus 84 ~---~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l 159 (203)
T cd02183 84 D---LTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRL 159 (203)
T ss_pred C---CCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEE
Confidence 4 56899999987654 355667788889999999999999999999999999999987532 356799 699999
Q ss_pred EEEeeeCCC---------cccCCCCcccCCCCCCeEEEEcEEEEEEe
Q 022405 194 FSSIWNADE---------WATRGGLEKTDWKKAPFVSSYKDFSVDGC 231 (297)
Q Consensus 194 ~lnlW~gg~---------Wat~GG~~~~d~~~~Pf~a~~~~~~v~~c 231 (297)
++|+|+||+ || ||+ +||+.+||+|.|++|+|.++
T Consensus 160 ~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEeC
Confidence 999999985 99 775 89999999999999999865
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=3.3e-38 Score=282.70 Aligned_cols=177 Identities=30% Similarity=0.581 Sum_probs=150.0
Q ss_pred ccccccCCceEEeCCCcEEEEEecCC-------CcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCc
Q 022405 36 FSIMWSENHFTTSEDGQIWFLSLDKE-------TGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRD 108 (297)
Q Consensus 36 f~~~w~~~nv~~~~~G~~l~L~ld~~-------sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~d 108 (297)
..++|.++||.+. +| .|.|++.+. ++++|.|+.+|+||+||+|||+|.+ +|+|+||||++.+..+..++
T Consensus 25 ~~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~ 100 (212)
T cd02175 25 FNCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHD 100 (212)
T ss_pred EeeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCC
Confidence 4468889999996 55 488888543 4799999999999999999999987 89999999998644345679
Q ss_pred eeeEEecCCCCCCccEEEeeEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCCC
Q 022405 109 ELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNE 188 (297)
Q Consensus 109 EIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~ 188 (297)
|||||++|++. ..+++|+|.++.++.+..+.+.+|++++||+|+|+|+|++|+|||||++++++...+ ..+| +
T Consensus 101 EIDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p-~ 173 (212)
T cd02175 101 EIDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP-D 173 (212)
T ss_pred EEEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC-C
Confidence 99999999764 468999998877666666778889999999999999999999999999999997643 3689 6
Q ss_pred CceEEEEEeeeCC---CcccCCCCcccCCCCCCeEEEEcEEEEE
Q 022405 189 KPMYLFSSIWNAD---EWATRGGLEKTDWKKAPFVSSYKDFSVD 229 (297)
Q Consensus 189 ~Pm~l~lnlW~gg---~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 229 (297)
+||+|++|+|.++ +|+ |. +|. .+|++|+||+||+.
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 9999999999985 598 43 676 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4.1e-36 Score=261.46 Aligned_cols=176 Identities=32% Similarity=0.598 Sum_probs=149.4
Q ss_pred ccccccccCCceEEeCCCcEEEEEecC-----CCcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCc
Q 022405 34 DNFSIMWSENHFTTSEDGQIWFLSLDK-----ETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRD 108 (297)
Q Consensus 34 ~~f~~~w~~~nv~~~~~G~~l~L~ld~-----~sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~d 108 (297)
+.+.++|+++||.+.++ ..|.|++++ .++++|+|+..++||+||+|||++.+ .|+++||||.+.+. |+.++
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~ 78 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGG 78 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchh
Confidence 56889999999999644 469999976 57899999999999999999998876 89999999965334 78999
Q ss_pred eeeEEecCCCCCCccEEEeeEEeCCCCCc--ceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCC
Q 022405 109 ELDFEFLGNRTGQPYLIQTNIYKNGTGNR--EMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFP 186 (297)
Q Consensus 109 EIDiE~lGn~~g~p~~~qTNv~~~G~g~r--e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 186 (297)
|||||++|+++. .+++|+|..+.+.. +.++.+.+++.++||+|+|+|+|++|+|||||++++++......+.+||
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999998643 59999998887765 4567778899999999999999999999999999999987654334689
Q ss_pred CCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEE
Q 022405 187 NEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFS 227 (297)
Q Consensus 187 ~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 227 (297)
+..||+|.+++|.+++|++..| .|.||+||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 5599999999999999996555 46777765
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.1e-33 Score=248.76 Aligned_cols=174 Identities=31% Similarity=0.589 Sum_probs=144.3
Q ss_pred cccccCCceEEeCCCcEEEEEecC------CCcceEEE-eeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCce
Q 022405 37 SIMWSENHFTTSEDGQIWFLSLDK------ETGCGFQT-KQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDE 109 (297)
Q Consensus 37 ~~~w~~~nv~~~~~G~~l~L~ld~------~sGs~i~S-k~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dE 109 (297)
...|.++||.+.++| .|.|++++ ..+++|.| ++.|+||+||+|||++.+ .|+|+||||++.+..++..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 357789999997657 48888854 35789999 999999999999999987 899999999998654578999
Q ss_pred eeEEecCCCCCCccEEEeeEEeCCCC-----CcceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCC
Q 022405 110 LDFEFLGNRTGQPYLIQTNIYKNGTG-----NREMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDF 184 (297)
Q Consensus 110 IDiE~lGn~~g~p~~~qTNv~~~G~g-----~re~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 184 (297)
||||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999976 34688888866543 2333455666789999999999999999999999999998642
Q ss_pred CCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEE
Q 022405 185 FPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSV 228 (297)
Q Consensus 185 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v 228 (297)
.| ++||+|+||+|.+++|++ . .+....|..|.|++|||
T Consensus 172 ~p-~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VP-DDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CC-CCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEE
Confidence 68 699999999999999882 2 34567899999999997
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=2.5e-32 Score=247.23 Aligned_cols=181 Identities=25% Similarity=0.417 Sum_probs=142.9
Q ss_pred ccccCCceEEeCCCcEEEEEecCC----------CcceEEE--eeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCC---
Q 022405 38 IMWSENHFTTSEDGQIWFLSLDKE----------TGCGFQT--KQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENG--- 102 (297)
Q Consensus 38 ~~w~~~nv~~~~~G~~l~L~ld~~----------sGs~i~S--k~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~--- 102 (297)
..+.++|+.+. +| .|.|+.++. .+++|.| ++.|+|||||||||+|.+ +|++|||||++.+.
T Consensus 33 ~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 45678899884 67 488877432 3578999 889999999999999987 89999999999864
Q ss_pred CCCCCceeeE-EecCCCCCCccEEEeeEEeCCCC----CcceeEeccC-CCCCCcEEEEEEEcCceEEEEecCEEEEEEe
Q 022405 103 AGPTRDELDF-EFLGNRTGQPYLIQTNIYKNGTG----NREMRHMLWF-DPTQDYHTYSILWNNHQIVFFVDRVPIRVFK 176 (297)
Q Consensus 103 ~~~~~dEIDi-E~lGn~~g~p~~~qTNv~~~G~g----~re~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 176 (297)
.|+..+|||| |++|+. |..+++++|..+.. ..+..+.+.. ++.++||+|+++|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 2688999998 999976 34688888876643 2333455554 7899999999999999999999999999998
Q ss_pred cCCCCC-CCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEEE
Q 022405 177 NNGKAN-DFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSVD 229 (297)
Q Consensus 177 ~~~~~g-~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 229 (297)
+..... ...|.++||+|+||++.+++|+ |. ...-...|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 654221 1234479999999999999999 32 1244567999999999983
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.9e-32 Score=251.29 Aligned_cols=178 Identities=19% Similarity=0.291 Sum_probs=134.3
Q ss_pred CCceEEeCCCcEEEEEecCC-----------CcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCcee
Q 022405 42 ENHFTTSEDGQIWFLSLDKE-----------TGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDEL 110 (297)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~-----------sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dEI 110 (297)
++|+.+ .+| .|.|+..+. ++++|.|++.++|||||||||+|.+ . .+|||||++.+ ++.++||
T Consensus 57 ~~nv~v-~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEI 129 (258)
T cd02178 57 ADNVSV-EDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEI 129 (258)
T ss_pred cCCeEE-ECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcE
Confidence 467777 467 488877433 3689999999999999999999976 3 57999999976 5689999
Q ss_pred eE-EecCCCC--CCccEEEeeEEeCCCC-----Cc---ceeEeccCCCCCCcEEEEEEEc-CceEEEEecCEEEEEEecC
Q 022405 111 DF-EFLGNRT--GQPYLIQTNIYKNGTG-----NR---EMRHMLWFDPTQDYHTYSILWN-NHQIVFFVDRVPIRVFKNN 178 (297)
Q Consensus 111 Di-E~lGn~~--g~p~~~qTNv~~~G~g-----~r---e~~~~l~fdp~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~ 178 (297)
|| |++|+.. ..+..+++++|..+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.
T Consensus 130 DI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~ 209 (258)
T cd02178 130 DILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENS 209 (258)
T ss_pred EhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCc
Confidence 98 9999763 2245688887643221 11 1234445667899999999999 9999999999999999875
Q ss_pred CCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEEE
Q 022405 179 GKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSVD 229 (297)
Q Consensus 179 ~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 229 (297)
+. ....|+++||+|+||++.|| |++..+.. ..-...|..|.||+|||.
T Consensus 210 ~~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 210 EI-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred cc-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 33 23356589999999999988 99321221 222346999999999985
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=4e-30 Score=238.67 Aligned_cols=173 Identities=20% Similarity=0.294 Sum_probs=129.3
Q ss_pred CCceEEeCCCcEEEEEecCC-------------------CcceEEEeeeeEeEEEEEEEEeeC-CCCCceEEEEEeeecC
Q 022405 42 ENHFTTSEDGQIWFLSLDKE-------------------TGCGFQTKQRYRFGWFSMKLKLVG-GDSAGVVTAYYMCTEN 101 (297)
Q Consensus 42 ~~nv~~~~~G~~l~L~ld~~-------------------sGs~i~Sk~~~~YG~~EariKlp~-g~s~G~v~AFwl~s~~ 101 (297)
++|+.+ .+|. |.|+..+. +++++.|+.+|+|||||||||+++ + .|+||||||+++.
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467776 5784 87877432 457899999999999999999865 5 8999999999863
Q ss_pred ------CCCCCCceeeE-EecCCC---CCCcc----EEEeeEEeCCCCC--c--------ceeEeccCCCCCCcEEEEEE
Q 022405 102 ------GAGPTRDELDF-EFLGNR---TGQPY----LIQTNIYKNGTGN--R--------EMRHMLWFDPTQDYHTYSIL 157 (297)
Q Consensus 102 ------~~~~~~dEIDi-E~lGn~---~g~p~----~~qTNv~~~G~g~--r--------e~~~~l~fdp~~dfHtY~i~ 157 (297)
..||.++|||| |.+|.. .+++. .+|++++.+|.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 14789999999 887753 12233 4555555554431 1 12355678999999999999
Q ss_pred EcCceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCC---------CcccCCCCcccCCCCCCeEEEEcEEEE
Q 022405 158 WNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNAD---------EWATRGGLEKTDWKKAPFVSSYKDFSV 228 (297)
Q Consensus 158 Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg---------~Wat~GG~~~~d~~~~Pf~a~~~~~~v 228 (297)
|+|++|+|||||++++++.+ .+. ++||.+.+++-... .|+ |+. .+.+..|-.|.||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------Ccc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 99999999999999999864 234 68999998874432 355 433 45677899999999998
Q ss_pred E
Q 022405 229 D 229 (297)
Q Consensus 229 ~ 229 (297)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=1.3e-29 Score=237.95 Aligned_cols=184 Identities=21% Similarity=0.293 Sum_probs=128.0
Q ss_pred cccCCceEEeCCCcEEEEEecC-------CCcceEEE--eeeeEeEEEEEEEEeeCC-CCCceEEEEEeeecC-------
Q 022405 39 MWSENHFTTSEDGQIWFLSLDK-------ETGCGFQT--KQRYRFGWFSMKLKLVGG-DSAGVVTAYYMCTEN------- 101 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~-------~sGs~i~S--k~~~~YG~~EariKlp~g-~s~G~v~AFwl~s~~------- 101 (297)
.+.++|+.+ .+|. |.|+..+ .++++|.| |+.|+|||||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 445678877 5674 8887743 25689999 788999999999999963 247999999999863
Q ss_pred ---CCCCC------CceeeE-EecCCCC-CCccE---EE----------------eeEEeC------C-CCCccee----
Q 022405 102 ---GAGPT------RDELDF-EFLGNRT-GQPYL---IQ----------------TNIYKN------G-TGNREMR---- 140 (297)
Q Consensus 102 ---~~~~~------~dEIDi-E~lGn~~-g~p~~---~q----------------TNv~~~------G-~g~re~~---- 140 (297)
..||. .+|||| |.+|.+. ....+ +| ..+|.. . .++..++
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 13775 499999 9998542 11111 11 111210 0 0111110
Q ss_pred -EeccC----CCCCCcEEEEEEEcC-----ceEEEEecCEEEEEEecCCC--C----CCCCCCCCceEEEEEeeeCCCcc
Q 022405 141 -HMLWF----DPTQDYHTYSILWNN-----HQIVFFVDRVPIRVFKNNGK--A----NDFFPNEKPMYLFSSIWNADEWA 204 (297)
Q Consensus 141 -~~l~f----dp~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--~----g~~~P~~~Pm~l~lnlW~gg~Wa 204 (297)
..+.- ...++||+|+|+|+| ++|+|||||+++++++.... . ..++| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 11111 135789999999999 89999999999999986421 1 12467 79999999999999998
Q ss_pred cCCCCcccCCCCCCeEEEEcEEEEE
Q 022405 205 TRGGLEKTDWKKAPFVSSYKDFSVD 229 (297)
Q Consensus 205 t~GG~~~~d~~~~Pf~a~~~~~~v~ 229 (297)
|. +.+-...|..|+||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 32 2445667999999999995
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=3e-29 Score=231.33 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=129.1
Q ss_pred cccCCceEEeCCCcEEEEEecCC-----CcceEEEeeee--Ee----EEEEEEEEeeCCC---CCceEEEEEeeecC---
Q 022405 39 MWSENHFTTSEDGQIWFLSLDKE-----TGCGFQTKQRY--RF----GWFSMKLKLVGGD---SAGVVTAYYMCTEN--- 101 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~-----sGs~i~Sk~~~--~Y----G~~EariKlp~g~---s~G~v~AFwl~s~~--- 101 (297)
+++++|+.+..+|. |.|+..+. ++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 55678998865784 77877433 45789997654 33 4999999999741 37999999999974
Q ss_pred --CCCCCCceeeE-EecCCCCCCccEEEeeEEeCCCC--CcceeEec--cCCCCCCcEEEEEEEcC-----ceEEEEecC
Q 022405 102 --GAGPTRDELDF-EFLGNRTGQPYLIQTNIYKNGTG--NREMRHML--WFDPTQDYHTYSILWNN-----HQIVFFVDR 169 (297)
Q Consensus 102 --~~~~~~dEIDi-E~lGn~~g~p~~~qTNv~~~G~g--~re~~~~l--~fdp~~dfHtY~i~Wtp-----~~I~fyVDG 169 (297)
..||..+|||| |..|.. +.+.+|.++....+ .++..... ...+.++||+|+|+|++ ++|+|||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG 197 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDG 197 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECC
Confidence 25888999999 999854 34555544332111 11111100 11245899999999997 999999999
Q ss_pred EEEEEEecCCC---CCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEEEE
Q 022405 170 VPIRVFKNNGK---ANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFSVD 229 (297)
Q Consensus 170 ~~vr~~~~~~~---~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~v~ 229 (297)
+++++++.... ...+.|.++||+|+||++.||+|+ |..-...-...|..|.||+|||.
T Consensus 198 ~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 198 VVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 99999976421 112223379999999999999998 22101112456899999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=9.8e-28 Score=228.74 Aligned_cols=140 Identities=22% Similarity=0.355 Sum_probs=105.2
Q ss_pred cceEEE--eeeeEeEEEEEEEEeeCCCCCceEEEEEeeecC---CCCCCCceeeE-EecCCCCCCc-------cEEEeeE
Q 022405 63 GCGFQT--KQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTEN---GAGPTRDELDF-EFLGNRTGQP-------YLIQTNI 129 (297)
Q Consensus 63 Gs~i~S--k~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~---~~~~~~dEIDi-E~lGn~~g~p-------~~~qTNv 129 (297)
.++|.| |+.|+|||||+|||||.| .|+||||||++.+ ..||..+|||| |..|+....+ ..++..+
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 577888 688999999999999998 7999999999975 25899999999 9999764221 1344445
Q ss_pred EeCCC-CC---cce--eE-eccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCC-------------------CCCC
Q 022405 130 YKNGT-GN---REM--RH-MLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNG-------------------KAND 183 (297)
Q Consensus 130 ~~~G~-g~---re~--~~-~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~ 183 (297)
|.... .. +.. .. ....+.+++||+|+|+|+|++|+|||||++++++.... ..+.
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 43211 11 111 11 12245678999999999999999999999999998521 0123
Q ss_pred CCCCCCceEEEEEeeeCCCcc
Q 022405 184 FFPNEKPMYLFSSIWNADEWA 204 (297)
Q Consensus 184 ~~P~~~Pm~l~lnlW~gg~Wa 204 (297)
..|+++|++|+||+++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 458899999999999999886
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=2.3e-27 Score=225.37 Aligned_cols=137 Identities=15% Similarity=0.196 Sum_probs=99.2
Q ss_pred cceEEE--eeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCC---CC-CCCceeeE-EecCCCCCC---c----cEEEee
Q 022405 63 GCGFQT--KQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENG---AG-PTRDELDF-EFLGNRTGQ---P----YLIQTN 128 (297)
Q Consensus 63 Gs~i~S--k~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~---~~-~~~dEIDi-E~lGn~~g~---p----~~~qTN 128 (297)
.|+|.| ++.|+|||||+|||||.| .|+||||||++.+. .| |..+|||| |.+||..-. . .+++..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 478888 478999999999999998 79999999999863 24 78999999 999986210 0 122222
Q ss_pred EEeCCCC-Ccce---eEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCC----------------CCCCCCCC
Q 022405 129 IYKNGTG-NREM---RHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGK----------------ANDFFPNE 188 (297)
Q Consensus 129 v~~~G~g-~re~---~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P~~ 188 (297)
.+..... .+.. ......+.+++||+|+|+|+|++|+|||||++++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 2211111 1111 01112356789999999999999999999999999985321 11245779
Q ss_pred CceEEEEEeeeCC
Q 022405 189 KPMYLFSSIWNAD 201 (297)
Q Consensus 189 ~Pm~l~lnlW~gg 201 (297)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=214.88 Aligned_cols=179 Identities=25% Similarity=0.430 Sum_probs=140.3
Q ss_pred ccccccCCceEEeCCCcEEEEEecC-------CCcceEEEeee--eEeEEEEEEEEeeCCCCCceEEEEEeeecCC-CCC
Q 022405 36 FSIMWSENHFTTSEDGQIWFLSLDK-------ETGCGFQTKQR--YRFGWFSMKLKLVGGDSAGVVTAYYMCTENG-AGP 105 (297)
Q Consensus 36 f~~~w~~~nv~~~~~G~~l~L~ld~-------~sGs~i~Sk~~--~~YG~~EariKlp~g~s~G~v~AFwl~s~~~-~~~ 105 (297)
.+++|...++.+..+| .|.|.+++ +.+++++|..+ |+||++|+|||+|.+ .|+||||||++... ++.
T Consensus 72 ~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 72 KNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred cccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 3457777778776665 57777753 45789999766 999999999999976 99999999999853 355
Q ss_pred CCceeeEEecCCCCCCccEEEeeEEeCCCCCcceeEeccC-CCCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCC
Q 022405 106 TRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWF-DPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDF 184 (297)
Q Consensus 106 ~~dEIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~f-dp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 184 (297)
.++|||||++|+.+. +..+|+|++.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++... ..
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 679999999997654 456999999998888777666677 888999999999999999999999999998743 34
Q ss_pred CCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcE
Q 022405 185 FPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKD 225 (297)
Q Consensus 185 ~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~ 225 (297)
.| ..||++++|+|.++.+.+.-|. ......|..+.+.+
T Consensus 224 ~~-~~p~y~~~nl~~~~~~~~~~~~--~~~~~~~~~~~~~~ 261 (355)
T COG2273 224 IP-QIPFYVLVNLWMGGYAGGPPGE--ALSAGSPLNIDYYR 261 (355)
T ss_pred Cc-CCcceeEEeecccCccCCCccc--cccCCcceEeeeee
Confidence 58 5999999999999876643232 33334455444433
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.83 E-value=4.4e-21 Score=135.56 Aligned_cols=48 Identities=52% Similarity=1.055 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCCCHHHHHHHHHHHhCCeeEecccCCCCCCCC-CCCC
Q 022405 243 TTTKNWWDQYDAWHLSDSQKLDHAWVLRNLVIYDYCKDTERFPTL-PVEC 291 (297)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-~~ec 291 (297)
++...||+++.++ ||++|+++|+|||+||||||||+|++|||.. |+||
T Consensus 3 ~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 3 SSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 3456899998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.59 E-value=2e-14 Score=142.47 Aligned_cols=190 Identities=22% Similarity=0.332 Sum_probs=122.4
Q ss_pred CceEEeCCCcEEEEEecCC-------CcceEEE--eeeeEeEEEEEEEEeeCC-CCCceEEEEEeeecCC----------
Q 022405 43 NHFTTSEDGQIWFLSLDKE-------TGCGFQT--KQRYRFGWFSMKLKLVGG-DSAGVVTAYYMCTENG---------- 102 (297)
Q Consensus 43 ~nv~~~~~G~~l~L~ld~~-------sGs~i~S--k~~~~YG~~EariKlp~g-~s~G~v~AFwl~s~~~---------- 102 (297)
+.|+. .+| .|.|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++-+
T Consensus 161 ~~vtt-~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g 238 (504)
T PF03935_consen 161 DAVTT-ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDG 238 (504)
T ss_pred CCcEe-eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCc
Confidence 34544 566 588988642 2466777 667788999999999842 4689999999997621
Q ss_pred CC---------------------------------------------CCCceeeE-EecCCCC-CCcc---EEEeeE---
Q 022405 103 AG---------------------------------------------PTRDELDF-EFLGNRT-GQPY---LIQTNI--- 129 (297)
Q Consensus 103 ~~---------------------------------------------~~~dEIDi-E~lGn~~-g~p~---~~qTNv--- 129 (297)
-| ....|||| |-..... +.+. .+|..=
T Consensus 239 ~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~ 318 (504)
T PF03935_consen 239 MWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDI 318 (504)
T ss_pred eecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccccc
Confidence 00 12369998 9754321 1111 122211
Q ss_pred -----------EeCCC-------CCccee-E----ec---cC--CCCCCcEEEEEEEcC-----ceEEEEecCEEEEEEe
Q 022405 130 -----------YKNGT-------GNREMR-H----ML---WF--DPTQDYHTYSILWNN-----HQIVFFVDRVPIRVFK 176 (297)
Q Consensus 130 -----------~~~G~-------g~re~~-~----~l---~f--dp~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~ 176 (297)
|.... |+.-|+ + .+ ++ ....+||+|++||.| ..|+|+|||+++.++.
T Consensus 319 ~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~ 398 (504)
T PF03935_consen 319 WYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTIN 398 (504)
T ss_pred CCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEE
Confidence 10000 111111 1 11 12 134789999999986 4899999999999997
Q ss_pred cCCC------CCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCC--CCeEEEEcEEEEEEeecCCCCCCCCC
Q 022405 177 NNGK------ANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKK--APFVSSYKDFSVDGCQWEDPYPECVS 242 (297)
Q Consensus 177 ~~~~------~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~--~Pf~a~~~~~~v~~c~~~~~~~~C~~ 242 (297)
...- ....+| ..||+|++|+....+|+ .+||.. .|.+|.||+|||..=... ..-.|.+
T Consensus 399 a~Al~~~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~-~~vgCDP 464 (504)
T PF03935_consen 399 AEALGPNPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDA-INVGCDP 464 (504)
T ss_pred hhhcCCCCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCC-CeeeeCC
Confidence 5421 124689 59999999999999997 366654 799999999999643211 1345863
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.47 E-value=4.5e-13 Score=125.47 Aligned_cols=148 Identities=22% Similarity=0.402 Sum_probs=96.2
Q ss_pred CCCcEEEEEecCC---------CcceEEEeeeeEeEEEEEEE-EeeCCCCCceEEEEEeeecCCCCCCCceeeE-EecCC
Q 022405 49 EDGQIWFLSLDKE---------TGCGFQTKQRYRFGWFSMKL-KLVGGDSAGVVTAYYMCTENGAGPTRDELDF-EFLGN 117 (297)
Q Consensus 49 ~~G~~l~L~ld~~---------sGs~i~Sk~~~~YG~~Eari-Klp~g~s~G~v~AFwl~s~~~~~~~~dEIDi-E~lGn 117 (297)
++| .|.|.+|+. ..++|.||..|.+|++|+|+ |||.+ .|+||||||++. .||..+|||| |.++.
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~--~WP~~GEIDImE~vn~ 121 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGP--NWPNGGEIDIIEGVNL 121 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCC--CCCCCCcEEEEeccCC
Confidence 456 477777643 24789999999999999997 99987 899999999987 4999999999 99986
Q ss_pred CCCCccEEEee----EEeCC--CC-------------CcceeE--------eccCCCCCCcEEEEEEEcCceEEEEe---
Q 022405 118 RTGQPYLIQTN----IYKNG--TG-------------NREMRH--------MLWFDPTQDYHTYSILWNNHQIVFFV--- 167 (297)
Q Consensus 118 ~~g~p~~~qTN----v~~~G--~g-------------~re~~~--------~l~fdp~~dfHtY~i~Wtp~~I~fyV--- 167 (297)
.+..-.++||. +-..+ .+ +....+ -..|+ ..+=-+|+++|+.+.|..+.
T Consensus 122 ~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R 200 (293)
T cd02181 122 QTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPR 200 (293)
T ss_pred CCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecC
Confidence 43322334432 00000 00 000011 11122 34457899999999987554
Q ss_pred cCEEEEEEecCC-------CCCCCCCCC---------CceEEEEEeeeCCCcc
Q 022405 168 DRVPIRVFKNNG-------KANDFFPNE---------KPMYLFSSIWNADEWA 204 (297)
Q Consensus 168 DG~~vr~~~~~~-------~~g~~~P~~---------~Pm~l~lnlW~gg~Wa 204 (297)
+.+|-- ++... .+-..|| . ++++|++++--=|+||
T Consensus 201 ~~iP~d-i~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 201 GSIPAD-ITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCCCcc-cccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 222221 11111 0113455 3 7999999999999999
No 18
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=89.54 E-value=4.8 Score=34.21 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=57.9
Q ss_pred CCcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeec-C---CCCCCCceeeEEecCCCCCCccEEEeeEEeCCCCC
Q 022405 61 ETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTE-N---GAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGN 136 (297)
Q Consensus 61 ~sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~-~---~~~~~~dEIDiE~lGn~~g~p~~~qTNv~~~G~g~ 136 (297)
..++-+.|+..|.=..+++.+|+.++ | -.++++-.. . ......-|+.|.--+.....+ ...|.--
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~-------~~~G~~~ 109 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLP-------NSTGSLY 109 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTT-------TSTTSBT
T ss_pred CCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCC-------CccceEE
Confidence 34567888887777899999998543 2 344444443 1 112345566663222110000 0011000
Q ss_pred -c---ceeE-eccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEecC
Q 022405 137 -R---EMRH-MLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKNN 178 (297)
Q Consensus 137 -r---e~~~-~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 178 (297)
. .... ....-+..+||++.|.-..++|+.+|||++|.++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 110 DEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 0000 0012246789999999999999999999999998753
No 19
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.79 E-value=0.92 Score=40.39 Aligned_cols=101 Identities=21% Similarity=0.310 Sum_probs=53.2
Q ss_pred cCCCcceEEEeee---eEeE-EEEEEEEeeCCCCCceEEEEEeeecCCCCCCCceeeEEecCCCCCCccEEEeeEEeCCC
Q 022405 59 DKETGCGFQTKQR---YRFG-WFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGT 134 (297)
Q Consensus 59 d~~sGs~i~Sk~~---~~YG-~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dEIDiE~lGn~~g~p~~~qTNv~~~G~ 134 (297)
...+|+++.|+.. -.+| +....+|+..| |..+-.|.=+. ..--++|-.-. .|+ |-.++ .|.
T Consensus 14 ~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~-----~r~l~~lsvn~--sG~---LvA~L--~g~ 78 (198)
T PF09264_consen 14 AGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS-----KRYLPILSVNE--SGS---LVAEL--EGQ 78 (198)
T ss_dssp EETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS-----EEEEEEEEE-T--TS----EEEEE--TTS
T ss_pred eccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc-----eEEEEEEEEcC--CCC---EEEEE--ecC
Confidence 3467888888753 3467 78889998876 44444433221 11112221111 111 11111 121
Q ss_pred CCcceeEeccCCCCCCcEEEEEEEcC--ceEEEEecCEEEEEE
Q 022405 135 GNREMRHMLWFDPTQDYHTYSILWNN--HQIVFFVDRVPIRVF 175 (297)
Q Consensus 135 g~re~~~~l~fdp~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~ 175 (297)
+++. .+.+.-..-.+||.|.|.-.| ..-.|||||++|++.
T Consensus 79 ss~~-~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 79 SSNT-LLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp -S-E-EEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCcE-EEecccccccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 1111 122110012579999999977 889999999999985
No 20
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=87.62 E-value=11 Score=32.73 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=49.5
Q ss_pred EEEEEEEeeCCCCCceEEEEEeeecCCCCCCCceeeEEecCCCCCCccEEEeeEEeCCCCCcceeEecc-CC-CCCCcEE
Q 022405 76 WFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLW-FD-PTQDYHT 153 (297)
Q Consensus 76 ~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dEIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~-fd-p~~dfHt 153 (297)
.+.+.+|..+. ..|+.-++.-. ....++-++.-|.. + .+.. +..+..+..+..... .+ ....||.
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~------~~~~~l~v~l~g~~---~-~~~~--~~~~~~g~~~~~~f~~~~l~dg~WH~ 121 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA------QNVRQFGLEVDGRA---N-TLLL--RYQGVDGKQHTVSFRNLPLADGQWHK 121 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC------CCcEEEEEEEeCCc---c-EEEE--EECCCCCcEEEEeecCCccccCCceE
Confidence 46677776542 35555444331 13345555655532 1 2332 222322222222111 11 3567999
Q ss_pred EEEEEcCceEEEEecCEEEEEEe
Q 022405 154 YSILWNNHQIVFFVDRVPIRVFK 176 (297)
Q Consensus 154 Y~i~Wtp~~I~fyVDG~~vr~~~ 176 (297)
-++.+..+++++|||++++.+..
T Consensus 122 lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 122 LALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEEEEeCCEEEEEECCcccccee
Confidence 99999999999999999988764
No 21
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=87.42 E-value=14 Score=30.12 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=44.9
Q ss_pred CCCCcEEEEEEEcC--ceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEc
Q 022405 147 PTQDYHTYSILWNN--HQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYK 224 (297)
Q Consensus 147 p~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 224 (297)
+...||...+.++. .+|..||||+++.+.... +.+...|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 44789999999988 799999999998654321 1121234333211111 11 12348999999
Q ss_pred EEEEEEeecC
Q 022405 225 DFSVDGCQWE 234 (297)
Q Consensus 225 ~~~v~~c~~~ 234 (297)
.++|..+..+
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999876543
No 22
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=85.20 E-value=11 Score=29.97 Aligned_cols=66 Identities=11% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEE
Q 022405 147 PTQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDF 226 (297)
Q Consensus 147 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~ 226 (297)
+...||..++.|...++.+||||+++.+...... ....+ ..+. -.|++. ....+|...++++
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~-~~~~------~iG~~~----------~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNS-NGPL------FIGGSG----------GGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTS-CCEE------EESS-S----------TT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCC-cceE------EEeecC----------CCCCceEEEEEEE
Confidence 3578999999999999999999998766432111 00111 1222 222221 2256899999999
Q ss_pred EEEE
Q 022405 227 SVDG 230 (297)
Q Consensus 227 ~v~~ 230 (297)
+|..
T Consensus 145 ~i~~ 148 (157)
T PF13385_consen 145 RIYN 148 (157)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9964
No 23
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=83.74 E-value=12 Score=33.01 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=43.4
Q ss_pred CCCCcEEEEEEEc--CceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEc
Q 022405 147 PTQDYHTYSILWN--NHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYK 224 (297)
Q Consensus 147 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 224 (297)
....||...+.|+ ..++.+||||+++.+-. -..+..++ .. ..|.|.-- --..||. .+. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~-~~-g~l~lG~~----q~~~gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVG-PG-GSIILGQE----QDSYGGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEEC-CC-CeEEEeec----ccCCCCC--CCC-CcceEEEEc
Confidence 4668999999997 45799999999875432 11222333 12 22333211 1111342 332 347888999
Q ss_pred EEEEEEe
Q 022405 225 DFSVDGC 231 (297)
Q Consensus 225 ~~~v~~c 231 (297)
+|+|..-
T Consensus 157 ~v~iw~~ 163 (201)
T cd00152 157 DVNMWDS 163 (201)
T ss_pred eeEEEcc
Confidence 9988543
No 24
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=79.10 E-value=46 Score=29.51 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=44.1
Q ss_pred CCCCcEEEEEEEc--CceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEc
Q 022405 147 PTQDYHTYSILWN--NHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYK 224 (297)
Q Consensus 147 p~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 224 (297)
....||...+.|+ ..++.+||||+++.. ..-..+..++ .+-.|+|.- ..+.+ ||. .+. ...|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~--f~~-~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GGG--FDA-TQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CCC--CCC-CcceeEEEe
Confidence 3568999999997 457999999998621 1112233343 223344443 22223 342 342 346888999
Q ss_pred EEEEEEee
Q 022405 225 DFSVDGCQ 232 (297)
Q Consensus 225 ~~~v~~c~ 232 (297)
+|+|-.-.
T Consensus 157 ~v~iw~~~ 164 (206)
T smart00159 157 DLNMWDSV 164 (206)
T ss_pred eeEEeccc
Confidence 99885443
No 25
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=76.38 E-value=13 Score=34.34 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEEEEeeCCC-----CCceEEEEEeeecCC-----C-------CC-CCceeeE-EecCCCCCCccEEEeeEEe-CCCC
Q 022405 76 WFSMKLKLVGGD-----SAGVVTAYYMCTENG-----A-------GP-TRDELDF-EFLGNRTGQPYLIQTNIYK-NGTG 135 (297)
Q Consensus 76 ~~EariKlp~g~-----s~G~v~AFwl~s~~~-----~-------~~-~~dEIDi-E~lGn~~g~p~~~qTNv~~-~G~g 135 (297)
-|-.+.++|... ...=.||+||++... + |. .++|+|| |.|.... . .+.+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 366777777621 244579999998741 1 33 6999998 9997542 3 35555554 4431
Q ss_pred -----CcceeEeccCCCCCCcEEEEEEEcCc
Q 022405 136 -----NREMRHMLWFDPTQDYHTYSILWNNH 161 (297)
Q Consensus 136 -----~re~~~~l~fdp~~dfHtY~i~Wtp~ 161 (297)
+..+.+- --|++..-+++|.++.+
T Consensus 179 ~~~~g~G~~~yf--~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYF--KRPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCcc--cCCCCCCeEEEEEEcCC
Confidence 1111111 13677888899888654
No 26
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=73.87 E-value=18 Score=30.44 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=25.7
Q ss_pred hhhhcccccccccccccccccCCceEEeCCCcEEEEEecCCCcce
Q 022405 21 ASEAAATSKGSFEDNFSIMWSENHFTTSEDGQIWFLSLDKETGCG 65 (297)
Q Consensus 21 ~~~~~~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~sGs~ 65 (297)
.+.+.++......+-|.. ..+++++...|..+.|..|...|++
T Consensus 15 ~~~~~~~~~~~~~~af~~--~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 15 FSTALAASDTCLQQAFEN--QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccccccchHHHHHHHHh--hccCeeEeccEEEEEECcccCCCCc
Confidence 333333333333444443 3467888778877777778788876
No 27
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=60.25 E-value=28 Score=31.72 Aligned_cols=58 Identities=22% Similarity=0.533 Sum_probs=38.3
Q ss_pred CcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCC-CCeEEEEcEEEE
Q 022405 150 DYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKK-APFVSSYKDFSV 228 (297)
Q Consensus 150 dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~-~Pf~a~~~~~~v 228 (297)
.|+.-.|.-....|.|.|||.+|........ ...|- . .+|+ |-..+ +|.+|.|+++.|
T Consensus 160 ~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------l------~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 160 GPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------L------RGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------c------cCcE--eeeeccchhhhhhccccC
Confidence 6777788889999999999999999875321 11241 0 1354 43344 799999999976
No 28
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=55.13 E-value=1.1e+02 Score=24.50 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=47.3
Q ss_pred EeEEEEEEEEeeCCCCCceEEEEEeeecCCCCCCCceeeEEecCCCCCCccEEEeeEEeCCCCCcceeEeccC-CCCCCc
Q 022405 73 RFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGPTRDELDFEFLGNRTGQPYLIQTNIYKNGTGNREMRHMLWF-DPTQDY 151 (297)
Q Consensus 73 ~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~~~dEIDiE~lGn~~g~p~~~qTNv~~~G~g~re~~~~l~f-dp~~df 151 (297)
....+++++|.... .|++ |++-+. ...+-+-+|... | .+...+- .| .....+.... -....|
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~----~~~~~~~l~l~~---g---~l~~~~~-~g--~~~~~~~~~~~v~dg~W 82 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ----NGGDFLALELED---G---RLVLRYD-LG--SGSLVLSSKTPLNDGQW 82 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC----CCCCEEEEEEEC---C---EEEEEEc-CC--cccEEEEccCccCCCCE
Confidence 44567777777643 5654 222222 134556666653 3 2333222 22 1222222211 124579
Q ss_pred EEEEEEEcCceEEEEecCEEEEE
Q 022405 152 HTYSILWNNHQIVFFVDRVPIRV 174 (297)
Q Consensus 152 HtY~i~Wtp~~I~fyVDG~~vr~ 174 (297)
|...|.+....+..+|||.+..+
T Consensus 83 h~v~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 83 HSVSVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEEEEECCCEEEEEECCccEEe
Confidence 99999999999999999985433
No 29
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.67 E-value=11 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhhccc
Q 022405 9 VFIAALMAATYYASEAAAT 27 (297)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (297)
|+|++||+++++.|+.+++
T Consensus 7 llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 3334444444444444433
No 30
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=51.21 E-value=1.1e+02 Score=27.02 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCCCcEEEEEEEcC--ceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEc
Q 022405 147 PTQDYHTYSILWNN--HQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYK 224 (297)
Q Consensus 147 p~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~ 224 (297)
....||.+.+.|+. ..+.+||||+....-. -..|...| .... ++|..-- + ..||. .| ....|+-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~-~gG~-~vlGQeQ-d---~~gG~--fd-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIP-GGGT-LVLGQEQ-D---SYGGG--FD-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B--SSEE-EEESS-B-S---BTTBT--CS-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceEC-CCCE-EEECccc-c---ccCCC--cC-CccEeeEEEe
Confidence 35789999999965 7899999999544322 12344555 2333 3343211 1 22453 34 3458888998
Q ss_pred EEEEE
Q 022405 225 DFSVD 229 (297)
Q Consensus 225 ~~~v~ 229 (297)
+|++-
T Consensus 151 ~~~iW 155 (195)
T PF00354_consen 151 DFNIW 155 (195)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88874
No 31
>PRK11372 lysozyme inhibitor; Provisional
Probab=45.13 E-value=79 Score=25.62 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=9.5
Q ss_pred cchhhHHHHHHHHHHHHHhhh
Q 022405 3 SSMVTLVFIAALMAATYYASE 23 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (297)
|.|-.+++++++++ +.+++.
T Consensus 1 ~~mk~ll~~~~~~l-L~gCs~ 20 (109)
T PRK11372 1 MSMKKLLIICLPVL-LTGCSA 20 (109)
T ss_pred CchHHHHHHHHHHH-HHHhcC
Confidence 56666664344433 334443
No 32
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=44.29 E-value=83 Score=23.58 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=16.2
Q ss_pred EeCCCcEEEEEecCCCcceEEE
Q 022405 47 TSEDGQIWFLSLDKETGCGFQT 68 (297)
Q Consensus 47 ~~~~G~~l~L~ld~~sGs~i~S 68 (297)
.+.+|+.+.+.+|..+|.-++.
T Consensus 61 ~~~dG~~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 61 RDKDGKKVEVYVDPATGEVVKE 82 (83)
T ss_pred EECCCCEEEEEEcCCCCeEeec
Confidence 4577888888888887766554
No 33
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=42.43 E-value=18 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=13.7
Q ss_pred CccchhhHH-HHHHHHHHHHHhhh
Q 022405 1 MISSMVTLV-FIAALMAATYYASE 23 (297)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~ 23 (297)
|+++|+.++ ||++|+.++-+.+.
T Consensus 14 MvlGMg~VfvFL~lLI~~i~~ms~ 37 (82)
T PRK02919 14 MFLGMGFVLAFLFLLIFAIRGMSA 37 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888766 55555555444443
No 34
>PRK02710 plastocyanin; Provisional
Probab=41.37 E-value=64 Score=26.12 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=8.4
Q ss_pred cccCCceEEeCCCcEEEEE
Q 022405 39 MWSENHFTTSEDGQIWFLS 57 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ 57 (297)
.|.++.+++. -|..++++
T Consensus 43 ~F~P~~i~v~-~Gd~V~~~ 60 (119)
T PRK02710 43 AFEPSTLTIK-AGDTVKWV 60 (119)
T ss_pred EEeCCEEEEc-CCCEEEEE
Confidence 4445555552 33345444
No 35
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.30 E-value=1.7e+02 Score=26.58 Aligned_cols=59 Identities=17% Similarity=0.337 Sum_probs=40.7
Q ss_pred EEEEEecCCCcceEEEeeeeEeEEEEEEEEeeCCCCCceEEEEEeeecCCCCC-CCceeeEEecC
Q 022405 53 IWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGGDSAGVVTAYYMCTENGAGP-TRDELDFEFLG 116 (297)
Q Consensus 53 ~l~L~ld~~sGs~i~Sk~~~~YG~~EariKlp~g~s~G~v~AFwl~s~~~~~~-~~dEIDiE~lG 116 (297)
.+.+.+..+.|..+.++..+.-|+|.-.+-- .|+.-+-+..-.+...| ...+||++|--
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~ 120 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWKT 120 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEeec
Confidence 4777777888999999999999988877653 45655555542222233 34899998853
No 36
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=33.69 E-value=3.3e+02 Score=23.86 Aligned_cols=71 Identities=13% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCCCcEEEEE--EEcC---ceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeE
Q 022405 146 DPTQDYHTYSI--LWNN---HQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFV 220 (297)
Q Consensus 146 dp~~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~ 220 (297)
.+...||.+.| .|.+ ..|..++||+++...... .-++..+..++-+.|.-.+ |.+..+. .+- .
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~----~~~~~~~~~y~K~GiYr~~-~~~~~~~--~~~-----~ 216 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP----TGYNDDRGPYFKFGIYRSG-WKNDPNE--SDT-----Q 216 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE----ECECCSSEEEEEEEEEEHC-CHHHSC----SS------
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC----ceeCCCCcceeEEEEECCC-CcCCCcc--ccc-----E
Confidence 34578999877 5775 779999999999888762 1233136777888887643 2211111 111 1
Q ss_pred EEEcEEEE
Q 022405 221 SSYKDFSV 228 (297)
Q Consensus 221 a~~~~~~v 228 (297)
.+|++|++
T Consensus 217 vy~D~v~~ 224 (224)
T PF14099_consen 217 VYYDNVRI 224 (224)
T ss_dssp EEEEEEE-
T ss_pred EEeccccC
Confidence 78888874
No 37
>smart00282 LamG Laminin G domain.
Probab=33.30 E-value=1.9e+02 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.1
Q ss_pred CCCcEEEEEEEcCceEEEEecCEEEEE
Q 022405 148 TQDYHTYSILWNNHQIVFFVDRVPIRV 174 (297)
Q Consensus 148 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 174 (297)
...||.-.|.-....+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 457999999999999999999975443
No 38
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=31.49 E-value=87 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=28.3
Q ss_pred ceeEeccCCCCCCcEEEEEEEcCceEEEEecCEEEEEE
Q 022405 138 EMRHMLWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVF 175 (297)
Q Consensus 138 e~~~~l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 175 (297)
..++++|- .+.|=|.|+|.-..+.+..+++|..+++-
T Consensus 92 ~k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 92 TKQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhheeEEE-EecCCceEEEEEeccceeeEEcCcccccc
Confidence 34566663 23444999999999999999999998863
No 39
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.37 E-value=1.4e+02 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=15.0
Q ss_pred cccCCceEEeCCCcEEEEEecCC
Q 022405 39 MWSENHFTTSEDGQIWFLSLDKE 61 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~ 61 (297)
.|.++.+++ ..|+.++|++.+.
T Consensus 31 ~f~P~~i~v-~~G~~v~l~~~N~ 52 (104)
T PF13473_consen 31 GFSPSTITV-KAGQPVTLTFTNN 52 (104)
T ss_dssp EEES-EEEE-ETTCEEEEEEEE-
T ss_pred eEecCEEEE-cCCCeEEEEEEEC
Confidence 678889988 5677677877543
No 40
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=29.85 E-value=61 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcc
Q 022405 148 TQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWA 204 (297)
Q Consensus 148 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wa 204 (297)
..+||.|.+.-+=-.++.||||+...-..- -.+|| -.|.++--.|=+|-=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCcee----ccCCc-cCcccccceeEEeeecc
Confidence 578999999997656999999986543221 13578 47877777777777787
No 41
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.47 E-value=70 Score=23.90 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhhhhcccccccccccccccccCCc
Q 022405 7 TLVFIAALMAATYYASEAAATSKGSFEDNFSIMWSENH 44 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~w~~~n 44 (297)
|..+|++|+++.+.|.++.+ +.-+.-.+...|-..+
T Consensus 5 Si~VLlaLvLIg~fAVqSda--g~~y~p~y~~~~~y~g 40 (71)
T PF04202_consen 5 SIAVLLALVLIGSFAVQSDA--GYYYYPGYNAPRRYNG 40 (71)
T ss_pred hHHHHHHHHHHhhheeeecC--ccccCCCCCCCcccCC
Confidence 33455666666665555543 3445666665554443
No 42
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=27.25 E-value=2.8e+02 Score=21.07 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCCcEEEEEEEcCceEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeeeCCCcccCCCCcccCCCCCCeEEEEcEEE
Q 022405 148 TQDYHTYSILWNNHQIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWNADEWATRGGLEKTDWKKAPFVSSYKDFS 227 (297)
Q Consensus 148 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~~~ 227 (297)
...||.-.|.=....+...||+............ ..-+.....++.||.-...... ..-....|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~------~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS------SDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT------HHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc------eecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEE
Confidence 4679999999999999999999998876542210 0022234457777754421111 1101556777888877
Q ss_pred EE
Q 022405 228 VD 229 (297)
Q Consensus 228 v~ 229 (297)
+.
T Consensus 125 vn 126 (128)
T PF02210_consen 125 VN 126 (128)
T ss_dssp ET
T ss_pred EC
Confidence 64
No 43
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=25.73 E-value=2e+02 Score=23.16 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=33.1
Q ss_pred EeCCCCCcceeEe-ccCCCCCCcEEEEEEEcCceEEEEecCEEEEEEec
Q 022405 130 YKNGTGNREMRHM-LWFDPTQDYHTYSILWNNHQIVFFVDRVPIRVFKN 177 (297)
Q Consensus 130 ~~~G~g~re~~~~-l~fdp~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 177 (297)
+.+|.-++|++.. .+|.+.+.| .-.|.=++++...+|||+++..+..
T Consensus 58 ~~~g~Wg~Eer~~~~pf~~g~~F-~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 58 FLNGNWGPEERSGGFPFQPGQPF-ELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CCCCEecHhhccCCCCCCCCCeE-EEEEEEcCCEEEEEECCEeEEEecC
Confidence 3344434565543 455554444 8888999999999999999988863
No 44
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=23.17 E-value=56 Score=25.48 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=5.9
Q ss_pred CccchhhHH
Q 022405 1 MISSMVTLV 9 (297)
Q Consensus 1 ~~~~~~~~~ 9 (297)
|+++|+.++
T Consensus 14 ~vlGmg~Vf 22 (84)
T COG3630 14 MVLGMGFVF 22 (84)
T ss_pred HHHHHHHHH
Confidence 466777665
No 45
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.20 E-value=1.7e+02 Score=21.74 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=28.7
Q ss_pred cccCCceEEeCCCcEEEEEecCCCcceEEEeeeeEeEEEEEEEEeeCC
Q 022405 39 MWSENHFTTSEDGQIWFLSLDKETGCGFQTKQRYRFGWFSMKLKLVGG 86 (297)
Q Consensus 39 ~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~EariKlp~g 86 (297)
.+.+++|++.-+++.|.|+-.+..... ...+.+|+|+=+++||..
T Consensus 17 G~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 17 GFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 345566666555666777765432111 345678999999999964
No 46
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=21.19 E-value=1.8e+02 Score=22.84 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHhhhhcc
Q 022405 5 MVTLVFIAALMAATYYASEAAA 26 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (297)
||--|+|+.||++.++++.++.
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 5656777777777776665554
No 47
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=20.87 E-value=68 Score=24.65 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=10.3
Q ss_pred CccchhhHH-HHHHHHHHHHH
Q 022405 1 MISSMVTLV-FIAALMAATYY 20 (297)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~~~ 20 (297)
|+.+|+.++ ||++|++++-.
T Consensus 11 ~v~GM~~VF~fL~lLi~~i~~ 31 (82)
T TIGR01195 11 TVLGMGIVFLFLSLLIYAVRG 31 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777665 44444444333
No 48
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=20.85 E-value=1.4e+02 Score=23.94 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCCCcEEEEEEEcCceEEEEecCEEEEEEe
Q 022405 147 PTQDYHTYSILWNNHQIVFFVDRVPIRVFK 176 (297)
Q Consensus 147 p~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 176 (297)
|.++-|++.+. ..+..+++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46788999888 788899999999986654
No 49
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=20.73 E-value=1.2e+02 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=22.0
Q ss_pred eEEEEecCEEEEEEecCCCCCCCCCCCCceEEEEEeee
Q 022405 162 QIVFFVDRVPIRVFKNNGKANDFFPNEKPMYLFSSIWN 199 (297)
Q Consensus 162 ~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~lnlW~ 199 (297)
.+.|||||+++.+...... ..++-..|-.-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEEEc
Confidence 7889999999966543221 22331366666666644
Done!