BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022406
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 153/213 (71%), Gaps = 9/213 (4%)
Query: 34 KVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFI 93
+V +SW PRAF+ + FL+D ECD+++ A+ ++ +S+V DN SG+S S++RTS+GT+
Sbjct: 21 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 94 PKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGH 151
KG+D++I+ IE ++A T +P EN E +QVL Y GQKYEPHYDYF D VN GG
Sbjct: 81 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 152 RLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211
R+ T+LMYL+ V +GGETV PNAEQ+ T D SECAK+G+AVKP +GDAL+F+
Sbjct: 141 RVVTMLMYLTTVEEGGETVLPNAEQK-------VTGDGWSECAKRGLAVKPIKGDALMFY 193
Query: 212 SLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244
SL + DP SLH CP ++G+KWSATKWIHV
Sbjct: 194 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 153/213 (71%), Gaps = 9/213 (4%)
Query: 34 KVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFI 93
+V +SW PRAF+ + FL+D ECD+++ A+ ++ +S+V DN SG+S S++RTS+GT+
Sbjct: 13 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 72
Query: 94 PKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGH 151
KG+D++I+ IE ++A T +P EN E +QVL Y GQKYEPHYDYF D VN GG
Sbjct: 73 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 132
Query: 152 RLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211
R+ T+LMYL+ V +GGETV PNAEQ+ T D SECAK+G+AVKP +GDAL+F+
Sbjct: 133 RVVTMLMYLTTVEEGGETVLPNAEQK-------VTGDGWSECAKRGLAVKPIKGDALMFY 185
Query: 212 SLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244
SL + DP SLH CP ++G+KWSATKWIHV
Sbjct: 186 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 153/213 (71%), Gaps = 9/213 (4%)
Query: 34 KVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFI 93
+V +SW PRAF+ + FL+D ECD+++ A+ ++ +S+V DN SG+S S++RTS+GT+
Sbjct: 12 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWF 71
Query: 94 PKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGH 151
KG+D++I+ IE ++A T +P EN E +QVL Y GQKYEPHYDYF D VN GG
Sbjct: 72 AKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 131
Query: 152 RLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211
R+ T+LMYL+ V +GGETV PNAEQ+ T D SECAK+G+AVKP +GDAL+F+
Sbjct: 132 RVVTMLMYLTTVEEGGETVLPNAEQK-------VTGDGWSECAKRGLAVKPIKGDALMFY 184
Query: 212 SLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244
SL + DP SLH CP ++G+KWSATKWIHV
Sbjct: 185 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 149/213 (69%), Gaps = 9/213 (4%)
Query: 34 KVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFI 93
+V +SW PRAF+ + FL+D ECD+++ A+ + +S+V DN SG+S S++RTS+GT+
Sbjct: 21 EVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWF 80
Query: 94 PKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--VRGGH 151
KG+D++I+ IE ++A T +P EN E +QVL Y GQKYEPHYDYF D VN GG
Sbjct: 81 AKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQ 140
Query: 152 RLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211
R+ T L YL+ V +GGETV PNAEQ+ T D SECAK+G+AVKP +GDAL F+
Sbjct: 141 RVVTXLXYLTTVEEGGETVLPNAEQK-------VTGDGWSECAKRGLAVKPIKGDALXFY 193
Query: 212 SLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244
SL + DP SLH CP ++G+KWSATKWIHV
Sbjct: 194 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 31/203 (15%)
Query: 41 KPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESK-LSDVRTSSGTFIPKGKDA 99
+P V L+D ECD LI L+KS+L RS V G S+ ++D+RTSSG F+ +
Sbjct: 38 EPLIVVLGNVLSDEECDELIELSKSKLARSKV-----GSSRDVNDIRTSSGAFLDD--NE 90
Query: 100 IIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMY 159
+ A IE +I++ +P +GE + +L YE Q+Y+ HYDYF++ +R++T++ Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSA-ANNRISTLVXY 149
Query: 160 LSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIP 219
L+DV +GGET FP K ++V PR+G A+ F + +
Sbjct: 150 LNDVEEGGETFFP----------------------KLNLSVHPRKGXAVYFEYFYQDQSL 187
Query: 220 DPVSLHSGCPVIEGEKWSATKWI 242
+ ++LH G PV +GEKW AT+W+
Sbjct: 188 NELTLHGGAPVTKGEKWIATQWV 210
>pdb|3VI3|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|A Chain A, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|C Chain C, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 632
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 57 DHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLPK 116
++LINL + QL+ + A ++ +S L + G F + +AG+ T+ ++
Sbjct: 207 EYLINLVQGQLQ-TRQASSIYDDSYLG-YSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTI 264
Query: 117 ENGEDIQVLRYEHGQKYEPHYDY 139
NG DI+ L G++ ++ Y
Sbjct: 265 LNGSDIRSLYNFSGEQMASYFGY 287
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 283 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 328
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 329 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 357
>pdb|2G2X|A Chain A, X-ray Crystal Structure Protein Q88ch6 From Pseudomonas
Putida. Northeast Structural Genomics Consortium Target
Ppr72.
pdb|2G2X|B Chain B, X-ray Crystal Structure Protein Q88ch6 From Pseudomonas
Putida. Northeast Structural Genomics Consortium Target
Ppr72.
pdb|2G2X|C Chain C, X-ray Crystal Structure Protein Q88ch6 From Pseudomonas
Putida. Northeast Structural Genomics Consortium Target
Ppr72
Length = 157
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 15/70 (21%)
Query: 191 SECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSL------HSGCPVIEGEKWSATKWIHV 244
S C + GIA R A A PDP +L H + WSA HV
Sbjct: 52 SSCPQPGIAGIARITRA---------AYPDPTALDPESHYHDAKATTDKNPWSAVDVAHV 102
Query: 245 DSFDKIVEEG 254
+F +++E G
Sbjct: 103 QTFPRVLELG 112
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI +G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITSGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITTGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 95 KGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLA 154
KG DAI G+E TWT P + + +E + Y + G H+
Sbjct: 317 KGADAITTGLE---VTWTTTPTQWSHNF----------FENLFGYEWELTKSPAGAHQW- 362
Query: 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLS 191
VAKG + V P+A + R DLS
Sbjct: 363 --------VAKGADAVIPDAFDPSKKHRPTMLTTDLS 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,140,118
Number of Sequences: 62578
Number of extensions: 390374
Number of successful extensions: 786
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 18
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)