Query 022406
Match_columns 297
No_of_seqs 295 out of 1474
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 7.6E-80 1.6E-84 568.7 24.6 269 25-297 37-308 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 6.7E-52 1.4E-56 378.4 16.5 212 17-248 72-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.1E-36 2.3E-41 261.9 17.9 174 42-243 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 5.5E-29 1.2E-33 220.7 14.4 168 44-248 2-182 (226)
5 PHA02869 C4L/C10L-like gene fa 99.7 5.2E-18 1.1E-22 158.4 10.4 139 67-244 45-191 (418)
6 PHA02813 hypothetical protein; 99.7 8.2E-18 1.8E-22 155.2 11.2 145 57-242 26-180 (354)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.7 1.5E-16 3.4E-21 123.7 6.1 91 122-243 1-100 (100)
8 COG3128 PiuC Uncharacterized i 99.6 8.8E-16 1.9E-20 129.7 9.6 169 42-247 2-184 (229)
9 KOG3710 EGL-Nine (EGLN) protei 99.2 5.2E-10 1.1E-14 97.8 12.2 165 43-247 54-242 (280)
10 smart00254 ShKT ShK toxin doma 99.1 2.9E-11 6.2E-16 75.4 1.0 33 257-297 1-33 (33)
11 PF01549 ShK: ShK domain-like; 98.8 1.1E-09 2.3E-14 70.2 0.3 36 256-297 1-38 (38)
12 COG3751 EGL-9 Predicted prolin 98.6 3.8E-07 8.1E-12 82.1 11.5 101 121-246 137-242 (252)
13 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.6 6.9E-08 1.5E-12 70.5 4.5 52 119-174 10-65 (70)
14 PF03336 Pox_C4_C10: Poxvirus 98.5 3.7E-07 8E-12 84.7 9.4 126 83-242 38-167 (339)
15 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.4 1.5E-07 3.2E-12 72.7 2.8 90 120-243 2-97 (98)
16 PHA02866 Hypothetical protein; 98.3 2.9E-06 6.3E-11 77.2 8.3 134 65-241 30-166 (333)
17 TIGR02408 ectoine_ThpD ectoine 98.1 7.3E-05 1.6E-09 68.8 12.8 193 37-242 24-247 (277)
18 PF09859 Oxygenase-NA: Oxygena 97.8 9.4E-05 2E-09 62.1 7.3 102 121-244 63-172 (173)
19 PF05721 PhyH: Phytanoyl-CoA d 97.6 0.00034 7.4E-09 59.8 9.3 172 43-233 5-206 (211)
20 KOG3844 Predicted component of 97.6 0.00069 1.5E-08 64.2 11.6 179 40-250 33-223 (476)
21 PF13759 2OG-FeII_Oxy_5: Putat 97.3 0.00038 8.3E-09 54.1 5.3 93 125-238 5-98 (101)
22 TIGR01762 chlorin-enz chlorina 97.1 0.019 4.1E-07 53.3 14.7 186 40-242 13-247 (288)
23 TIGR02466 conserved hypothetic 96.8 0.0065 1.4E-07 53.4 8.2 95 124-239 100-195 (201)
24 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.8 0.0055 1.2E-07 52.8 7.7 154 44-233 2-177 (194)
25 PF12851 Tet_JBP: Oxygenase do 96.5 0.011 2.3E-07 50.7 7.3 79 132-243 86-170 (171)
26 PRK15401 alpha-ketoglutarate-d 96.3 0.14 3.1E-06 45.4 13.8 160 40-233 16-196 (213)
27 PHA02923 hypothetical protein; 95.7 0.051 1.1E-06 50.0 8.0 98 98-240 43-142 (315)
28 KOG3200 Uncharacterized conser 94.9 0.16 3.5E-06 43.3 8.0 94 38-140 8-108 (224)
29 COG3826 Uncharacterized protei 93.3 0.33 7.1E-06 41.8 6.9 102 121-244 125-234 (236)
30 KOG3371 Uncharacterized conser 93.2 0.028 6E-07 50.5 0.3 47 237-297 14-62 (243)
31 KOG3959 2-Oxoglutarate- and ir 86.9 1 2.2E-05 40.4 4.5 95 42-142 72-176 (306)
32 PF06822 DUF1235: Protein of u 86.4 4.6 9.9E-05 36.9 8.5 108 98-247 32-140 (266)
33 COG3145 AlkB Alkylated DNA rep 86.3 16 0.00035 31.9 11.6 98 85-211 71-170 (194)
34 PLN02485 oxidoreductase 86.0 5.2 0.00011 37.7 9.1 48 197-245 237-288 (329)
35 PLN02984 oxidoreductase, 2OG-F 84.9 7.8 0.00017 36.8 9.8 88 121-245 201-299 (341)
36 PLN03001 oxidoreductase, 2OG-F 84.8 6.3 0.00014 36.0 8.8 109 100-245 88-214 (262)
37 PLN02639 oxidoreductase, 2OG-F 83.7 10 0.00023 35.8 10.1 89 121-245 191-289 (337)
38 PLN00417 oxidoreductase, 2OG-F 83.2 7.9 0.00017 36.8 9.1 89 121-245 204-302 (348)
39 KOG4176 Uncharacterized conser 82.9 20 0.00044 33.8 11.4 117 98-247 189-307 (323)
40 PLN02299 1-aminocyclopropane-1 81.7 6.7 0.00014 36.9 7.9 89 121-245 159-257 (321)
41 PLN02216 protein SRG1 81.1 9.1 0.0002 36.6 8.7 47 197-244 258-308 (357)
42 PLN02904 oxidoreductase 80.9 14 0.00031 35.2 10.0 47 197-244 255-305 (357)
43 PF10057 DUF2294: Uncharacteri 78.2 5.7 0.00012 31.7 5.3 56 1-60 1-57 (118)
44 PLN02276 gibberellin 20-oxidas 77.4 17 0.00036 34.8 9.2 87 121-244 207-303 (361)
45 PLN02403 aminocyclopropanecarb 76.7 12 0.00026 34.9 7.8 47 197-245 201-253 (303)
46 TIGR00568 alkb DNA alkylation 76.3 25 0.00055 29.9 9.1 42 98-139 73-114 (169)
47 PLN02912 oxidoreductase, 2OG-F 75.4 16 0.00035 34.7 8.5 89 121-246 198-296 (348)
48 PLN02750 oxidoreductase, 2OG-F 74.1 31 0.00067 32.7 10.1 48 197-245 242-293 (345)
49 PLN02365 2-oxoglutarate-depend 73.6 18 0.0004 33.5 8.3 48 197-245 199-250 (300)
50 COG4340 Uncharacterized protei 73.6 5.7 0.00012 34.5 4.4 52 156-232 148-201 (226)
51 PLN02758 oxidoreductase, 2OG-F 73.6 22 0.00047 34.0 9.0 47 197-244 260-310 (361)
52 PF14033 DUF4246: Protein of u 73.6 13 0.00029 37.2 7.7 99 126-243 359-477 (501)
53 PLN02947 oxidoreductase 73.4 24 0.00052 34.0 9.2 88 121-245 226-323 (374)
54 PLN02997 flavonol synthase 73.1 15 0.00033 34.5 7.7 89 121-246 184-282 (325)
55 PLN02515 naringenin,2-oxogluta 73.1 16 0.00036 34.9 7.9 48 197-245 244-295 (358)
56 PHA02985 hypothetical protein; 71.8 26 0.00056 32.0 8.3 106 98-246 39-144 (271)
57 KOG4459 Membrane-associated pr 71.8 0.8 1.7E-05 44.7 -1.3 74 150-247 364-437 (471)
58 PLN02254 gibberellin 3-beta-di 70.6 34 0.00074 32.7 9.5 88 121-244 211-308 (358)
59 PTZ00273 oxidase reductase; Pr 70.2 47 0.001 31.0 10.3 47 197-245 226-276 (320)
60 PLN02393 leucoanthocyanidin di 70.2 35 0.00075 32.6 9.5 48 197-245 261-312 (362)
61 KOG0143 Iron/ascorbate family 68.4 27 0.00058 32.9 8.2 85 121-242 177-273 (322)
62 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 67.9 3.5 7.5E-05 36.0 1.9 56 151-232 124-179 (195)
63 PLN02704 flavonol synthase 67.0 18 0.0004 34.1 6.8 48 197-245 246-297 (335)
64 COG2850 Uncharacterized conser 65.8 13 0.00028 35.7 5.3 40 98-141 100-140 (383)
65 PLN03178 leucoanthocyanidin di 64.5 23 0.0005 33.8 7.0 48 197-245 258-309 (360)
66 PF02668 TauD: Taurine catabol 64.2 7.6 0.00016 34.3 3.5 38 196-241 219-258 (258)
67 COG5285 Protein involved in bi 62.0 36 0.00078 31.7 7.4 98 133-247 133-233 (299)
68 PLN02156 gibberellin 2-beta-di 60.4 96 0.0021 29.3 10.3 48 197-245 228-279 (335)
69 cd00250 CAS_like Clavaminic ac 55.8 18 0.00039 32.5 4.5 40 196-243 218-260 (262)
70 COG3491 PcbC Isopenicillin N s 54.3 58 0.0013 30.6 7.4 91 119-245 173-273 (322)
71 PLN03002 oxidoreductase, 2OG-F 44.9 79 0.0017 29.8 7.1 92 121-245 183-285 (332)
72 PF11403 Yeast_MT: Yeast metal 44.3 10 0.00022 23.4 0.6 8 288-295 18-25 (40)
73 PRK09553 tauD taurine dioxygen 36.0 26 0.00056 32.0 2.2 34 134-173 95-128 (277)
74 COG4902 Uncharacterized protei 29.3 98 0.0021 25.9 4.3 54 5-65 5-60 (189)
75 PF07350 DUF1479: Protein of u 26.8 40 0.00087 33.0 1.9 41 197-246 318-359 (416)
76 PF08562 Crisp: Crisp; InterP 25.7 25 0.00054 24.3 0.2 29 259-295 21-49 (55)
77 PF07894 DUF1669: Protein of u 25.4 83 0.0018 29.2 3.6 41 14-65 25-65 (284)
78 PF00642 zf-CCCH: Zinc finger 25.0 49 0.0011 19.0 1.3 16 261-276 3-18 (27)
79 TIGR02410 carnitine_TMLD trime 23.3 1E+02 0.0022 29.4 3.9 40 196-244 311-350 (362)
80 PF08686 PLAC: PLAC (protease 23.3 45 0.00097 20.6 1.0 32 256-295 1-33 (34)
81 KOG1971 Lysyl hydroxylase [Pos 23.2 67 0.0014 31.3 2.6 78 150-245 280-357 (415)
82 cd00250 CAS_like Clavaminic ac 22.4 97 0.0021 27.7 3.5 38 130-173 93-130 (262)
83 PRK09965 3-phenylpropionate di 22.0 1.2E+02 0.0026 23.2 3.5 49 155-233 4-52 (106)
84 PLN03207 stomagen; Provisional 21.7 68 0.0015 24.9 1.9 17 2-18 7-23 (113)
85 TIGR02409 carnitine_bodg gamma 20.6 95 0.002 29.6 3.1 38 127-171 182-219 (366)
86 cd08788 CARD_NOD2_2_CARD15 Cas 20.3 43 0.00094 25.0 0.6 16 46-61 24-39 (81)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=7.6e-80 Score=568.71 Aligned_cols=269 Identities=61% Similarity=1.126 Sum_probs=247.3
Q ss_pred CCccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhcccccceeeeCCCCcccccccccccccccCCCchHHHHHH
Q 022406 25 SSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGI 104 (297)
Q Consensus 25 ~~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i 104 (297)
.++..++|.|||+||++|+||+|+||||++||++||+++++++++|+++++.+|+...+++|+|.++|++..+++++++|
T Consensus 37 ~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I 116 (310)
T PLN00052 37 AAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRI 116 (310)
T ss_pred cCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHH
Confidence 34556799999999999999999999999999999999999999999987766777788899999999998779999999
Q ss_pred HHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCC
Q 022406 105 EDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTP 184 (297)
Q Consensus 105 ~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~ 184 (297)
++||++++++|.++.|++||+||++||+|++|+|++.+..+...+++|++|||+||||+++||||+||+.+....+
T Consensus 117 ~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~---- 192 (310)
T PLN00052 117 EERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQ---- 192 (310)
T ss_pred HHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccccccc----
Confidence 9999999999999999999999999999999999987644344578999999999999999999999997543332
Q ss_pred CCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCcccccC---CccccccCc
Q 022406 185 ATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFDKIVE---EGGDCTDNN 261 (297)
Q Consensus 185 ~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~~~~~~---~~~~C~d~~ 261 (297)
.+++.+++|++.+++|+|++|+||||+|+++||+.|+.++|+||||++|+||++|+|||.++++.|.. .+..|.|.+
T Consensus 193 ~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~ 272 (310)
T PLN00052 193 PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEHPPVVPKDTEGCADKS 272 (310)
T ss_pred ccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccCCCcCCccCCCCcCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999976643 467999999
Q ss_pred cccHhHhhcCccccCcccccccccCcchhhhhcCCC
Q 022406 262 ASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC 297 (297)
Q Consensus 262 ~~C~~wa~~geC~~n~~~m~~~~~~~~~C~~sC~~C 297 (297)
++|+.||+.|||++||.||+|+++++++|+||||.|
T Consensus 273 ~~C~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C 308 (310)
T PLN00052 273 AHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVC 308 (310)
T ss_pred ccChhHhhCCccccChHhhcCCCCCCChhhcccccc
Confidence 999999999999999999999999999999999999
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-52 Score=378.38 Aligned_cols=212 Identities=54% Similarity=0.921 Sum_probs=188.4
Q ss_pred hhhhhccCCCccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhcccccceee-eCCCCcccccccccccccccCC
Q 022406 17 SLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVA-DNLSGESKLSDVRTSSGTFIPK 95 (297)
Q Consensus 17 ~~~~~~~~~~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~-~~~~g~~~~~~~R~s~~~~l~~ 95 (297)
++..|+..+++..++|.|+|+|||+|+|++|+||||++||++|+.++++++++++|. +..+|....+.+|+|+++|+..
T Consensus 72 ~~~~~~~~~~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~ 151 (289)
T KOG1591|consen 72 RLSCRNRAGPFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD 151 (289)
T ss_pred hhhcccccCcceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC
Confidence 334444444888999999999999999999999999999999999999999999995 4444555566689999999998
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCccccccccccC---c-ccccCCCceeEEEEEeecCCCCCccccc
Q 022406 96 GKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSD---K-VNIVRGGHRLATVLMYLSDVAKGGETVF 171 (297)
Q Consensus 96 ~~~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~---~-~~~~~~~~R~~T~liYLnd~~~GGeT~F 171 (297)
..++++++|++||++++++|.++.|.+||++|+.||+|.+|+|++.. . .....+++|++|+|+||+|+++||+|+|
T Consensus 152 ~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvF 231 (289)
T KOG1591|consen 152 GASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVF 231 (289)
T ss_pred CCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccC
Confidence 78999999999999999999999999999999999999999999952 1 1234578999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCcc
Q 022406 172 PNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFD 248 (297)
Q Consensus 172 p~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~~ 248 (297)
|... ..++|+|++|+|++|+|+++||..|+++.|++|||..|+||++|+|||.+.++
T Consensus 232 P~~~--------------------~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 232 PNLG--------------------MKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred CCCC--------------------CcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 9973 12499999999999999999999999999999999999999999999998753
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=1.1e-36 Score=261.90 Aligned_cols=174 Identities=39% Similarity=0.638 Sum_probs=150.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhcccccceeeeCCCCcccccccccccccccCCCc-hHHHHHHHHHHHHhcCCC---CC
Q 022406 42 PRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGESKLSDVRTSSGTFIPKGK-DAIIAGIEDKIATWTFLP---KE 117 (297)
Q Consensus 42 P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~-~~v~~~i~~ri~~~~~~p---~~ 117 (297)
|.|++++||||++||++||+++++...++++..+..+....+++|+|..+|+...+ ++++++|++||+.+++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999977788877543332256789999999998754 789999999999999988 67
Q ss_pred CCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCC
Q 022406 118 NGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKG 197 (297)
Q Consensus 118 ~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~ 197 (297)
..+.+|+++|++|++|.+|+|...... .++|.+|+++||||+++||+|.||..+. ...
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~------------------~~~ 138 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL------------------MVC 138 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC------------------ccc
Confidence 889999999999999999999986531 2589999999999999999999998631 025
Q ss_pred eeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEe
Q 022406 198 IAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIH 243 (297)
Q Consensus 198 ~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 243 (297)
..|+|++|++|+|++.. +.++|+++||++|+||++++|+|
T Consensus 139 ~~v~P~~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 139 ATVKPKKGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred eEEeCCCCcEEEEeCCC------CCccccCCcceeCCEEEEEEEEC
Confidence 69999999999998742 27999999999999999999996
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=220.68 Aligned_cols=168 Identities=23% Similarity=0.259 Sum_probs=129.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHhc-ccccceeeeCCCCcccccccccccccccCCCchHHHHHHHHHHHHhc---------C
Q 022406 44 AFVYEGFLTDLECDHLINLAKS-QLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWT---------F 113 (297)
Q Consensus 44 i~~i~nfLs~~Ec~~li~~a~~-~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~~---------~ 113 (297)
|++|+||||++||+++++..+. .+.+..+.. | ...+.+|++.++-. ++++++.|.++|.... .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta---G-~~~~~vKnN~ql~~---d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA---G-AQAAQVKNNQQLPE---DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc---C-ccchhcccccccCC---CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 7899999999999999999876 465544432 2 23567888877643 3567777888777643 3
Q ss_pred CCCCCCccceeeecCCCCccccccccccCccc-ccCCCceeEEEEEeecCCC--CCcccccCCCCCCCCCCCCCCCCCcc
Q 022406 114 LPKENGEDIQVLRYEHGQKYEPHYDYFSDKVN-IVRGGHRLATVLMYLSDVA--KGGETVFPNAEQEPPRRRTPATNDDL 190 (297)
Q Consensus 114 ~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~-~~~~~~R~~T~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~~~~~ 190 (297)
+|.. ..+++|.||.+|++|++|+|+...... .....+|.+|+++||||++ +||||+|+...
T Consensus 75 lp~~-i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~--------------- 138 (226)
T PRK05467 75 LPRK-IHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY--------------- 138 (226)
T ss_pred cccc-cccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC---------------
Confidence 3433 357899999999999999999865321 1112356899999999874 89999998742
Q ss_pred hhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCcc
Q 022406 191 SECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSFD 248 (297)
Q Consensus 191 ~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~~ 248 (297)
+...|+|++|++|+|++ .++|+|+||++|+||+++.|++..=.+
T Consensus 139 -----g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~v~~ 182 (226)
T PRK05467 139 -----GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSLVRD 182 (226)
T ss_pred -----CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHHcCC
Confidence 25789999999999986 699999999999999999999765443
No 5
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.75 E-value=5.2e-18 Score=158.43 Aligned_cols=139 Identities=20% Similarity=0.213 Sum_probs=111.4
Q ss_pred cccceeeeCCCC-cccccccccccccccCCCchHHHHHHHHHHHHhc-----CC--CCCCCccceeeecCCCCccccccc
Q 022406 67 LKRSAVADNLSG-ESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWT-----FL--PKENGEDIQVLRYEHGQKYEPHYD 138 (297)
Q Consensus 67 ~~~s~v~~~~~g-~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~~-----~~--p~~~~E~~qv~rY~~G~~y~~H~D 138 (297)
+.+|.+.+...| +......|.|.++.+. +.+.+.|++||+.+. +. .++.+|.++++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e---~~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFE---NSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEec---hHHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 578888876566 3345567999988775 467777777777642 32 456789999999999999999999
Q ss_pred cccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCC
Q 022406 139 YFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAI 218 (297)
Q Consensus 139 ~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~ 218 (297)
+.... .+....+|+|+|||++++||||.|.... ...|+|++| |+|
T Consensus 122 g~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~~~---------------------~~sI~pksg--LLF-------- 166 (418)
T PHA02869 122 FSTVF----SKNIICVHLLLYLEQPETGGETVIYIDN---------------------NTSVKLKTD--HLF-------- 166 (418)
T ss_pred Cceec----CCCEEEEEEEEEEeccCCCCceEEEeCC---------------------CceEecCCC--eEe--------
Confidence 87653 2456789999999999999999998832 577999999 888
Q ss_pred CCCCccccCCcccccceEEEEEEEec
Q 022406 219 PDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 219 ~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
++...|+|.+|.+|.||+|..=+..
T Consensus 167 -dh~l~Heg~~V~sG~KyVartDVmy 191 (418)
T PHA02869 167 -DKTIEHESITVESGRKCVALFDVLL 191 (418)
T ss_pred -ccccccCCcEeecCeEEEEEEEEEE
Confidence 4689999999999999999876643
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.74 E-value=8.2e-18 Score=155.22 Aligned_cols=145 Identities=23% Similarity=0.264 Sum_probs=108.5
Q ss_pred HHHHHHHhcccccceeeeCCCC-cccccccccccccccCCCchHHHHHHHHHHHHh-----cCCC----CCCCccceeee
Q 022406 57 DHLINLAKSQLKRSAVADNLSG-ESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATW-----TFLP----KENGEDIQVLR 126 (297)
Q Consensus 57 ~~li~~a~~~~~~s~v~~~~~g-~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~-----~~~p----~~~~E~~qv~r 126 (297)
-.+|+...-.+..|.+.+...| +....++|+++++.++.. +.|++||+.+ .+.+ ++.+|.++++|
T Consensus 26 ~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-----~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyr 100 (354)
T PHA02813 26 MDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-----DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIK 100 (354)
T ss_pred HHHHhccccCccccceeccccCceEEccccccceEEEEcCH-----HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEE
Confidence 3333333335788888875444 556788999999998842 4555555543 2332 46789999999
Q ss_pred cCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCccc
Q 022406 127 YEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGD 206 (297)
Q Consensus 127 Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~ 206 (297)
|.+||+|++|.|+..... ...+.+|+|+|||++++||||.|...+ .-.|. .|+
T Consensus 101 Y~kGq~F~~H~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~---------------------~tsI~--~g~ 153 (354)
T PHA02813 101 YEKGDFFNNHRDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD---------------------NTIFS--TKN 153 (354)
T ss_pred ECCCcccCcccCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC---------------------CceEe--ecc
Confidence 999999999999876431 123899999999999999999998742 12465 999
Q ss_pred EEEeeecCCCCCCCCCccccCCcccccceEEEEEEE
Q 022406 207 ALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWI 242 (297)
Q Consensus 207 allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi 242 (297)
+|+| |+...|+|.+|.+|.||+|..=+
T Consensus 154 dlLF---------dh~l~Heg~~V~sG~KyVa~~~V 180 (354)
T PHA02813 154 DVLF---------DKTLNHSSDIITDGEKNIALINV 180 (354)
T ss_pred eEEE---------ecccccCCcEeccCeEEEEEEEE
Confidence 9999 46899999999999999885533
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.65 E-value=1.5e-16 Score=123.70 Aligned_cols=91 Identities=36% Similarity=0.574 Sum_probs=69.8
Q ss_pred ceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCC---CCcccccCCCCCCCCCCCCCCCCCcchhhhcCCe
Q 022406 122 IQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA---KGGETVFPNAEQEPPRRRTPATNDDLSECAKKGI 198 (297)
Q Consensus 122 ~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~ 198 (297)
+|+.+|.+|++|++|.|... ...+.+|+|+|||+++ +||+|+|........ ...
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~----------------~~~ 57 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDD----------------VSR 57 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS-TSS----------------TCE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccccCCC----------------cce
Confidence 58999999999999999854 2478999999999877 899999987420000 123
Q ss_pred eE-----ecCcccEEEeeecCCCCCCCCCccccCCcc-cccceEEEEEEEe
Q 022406 199 AV-----KPRRGDALLFFSLHTNAIPDPVSLHSGCPV-IEGEKWSATKWIH 243 (297)
Q Consensus 199 ~V-----~P~~G~allF~n~~~~g~~D~~~lH~g~PV-~~G~K~i~~~Wi~ 243 (297)
.+ +|+.|++|+|.+ ..++|++.|| ..|.|++++.|+|
T Consensus 58 ~~~~~~~~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 58 EVEDFDIVPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEGGGSEE-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEEeccccCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 33 399999999986 3799999999 8999999999996
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.64 E-value=8.8e-16 Score=129.74 Aligned_cols=169 Identities=21% Similarity=0.246 Sum_probs=116.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhc-ccccceeeeCCCCcccccccccccccccCCCchHHHHHHHHHHHHh-------c-
Q 022406 42 PRAFVYEGFLTDLECDHLINLAKS-QLKRSAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATW-------T- 112 (297)
Q Consensus 42 P~i~~i~nfLs~~Ec~~li~~a~~-~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~-------~- 112 (297)
+..+.|+.+||+++|.+|.+..+. .+....+.. | ..-..+|++..+-.+ .++.+.+.+-|.+. .
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~---g-~q~a~vk~n~qlp~~---s~l~~~vg~~il~al~~~plff~ 74 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ---G-PQGAQVKNNLQLPQD---SALARELGNEILQALTAHPLFFA 74 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhcccccccccc---C-cchhhhhccccCCcc---cHHHHHHHHHHHHHHHhchhHHH
Confidence 356789999999999999987754 233332221 1 122345555544332 34444444433321 1
Q ss_pred -CCCCCCCccceeeecCCCCccccccccccCcccccCC--CceeEEEEEeecCCC--CCcccccCCCCCCCCCCCCCCCC
Q 022406 113 -FLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRG--GHRLATVLMYLSDVA--KGGETVFPNAEQEPPRRRTPATN 187 (297)
Q Consensus 113 -~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~--~~R~~T~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~~ 187 (297)
.+|. ..++.++.+|..|.+|..|+|+.....+...+ -+..+++.++|+|++ +|||++..+..
T Consensus 75 aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY------------ 141 (229)
T COG3128 75 AALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY------------ 141 (229)
T ss_pred hhccc-ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc------------
Confidence 2332 35789999999999999999997653121111 122467788999985 79999987753
Q ss_pred CcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCc
Q 022406 188 DDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 188 ~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 247 (297)
+...|+-.+|++|+|+| .++|++.||++|+|+....|++.--+
T Consensus 142 --------g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qslir 184 (229)
T COG3128 142 --------GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSLIR 184 (229)
T ss_pred --------cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHHhh
Confidence 26889999999999997 79999999999999999999976543
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=99.15 E-value=5.2e-10 Score=97.77 Aligned_cols=165 Identities=19% Similarity=0.335 Sum_probs=113.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhc-----ccccceeeeCCCCcccccccccccccccCCCch-------------HHHHHH
Q 022406 43 RAFVYEGFLTDLECDHLINLAKS-----QLKRSAVADNLSGESKLSDVRTSSGTFIPKGKD-------------AIIAGI 104 (297)
Q Consensus 43 ~i~~i~nfLs~~Ec~~li~~a~~-----~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~-------------~v~~~i 104 (297)
.+.+++|||-.+-=..+.+..+. .+.+..++..+. ...+++|.....|+.-.+. +++...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~--~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDA--FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcC--CcchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 47889999998877766666553 345555543322 2345899999999985431 111111
Q ss_pred HHHHHHhcCCCCCCCccceeeecC-CCCccccccccccCcccccCCCceeEEEEEeecC---CC-CCccc-ccCCCCCCC
Q 022406 105 EDKIATWTFLPKENGEDIQVLRYE-HGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSD---VA-KGGET-VFPNAEQEP 178 (297)
Q Consensus 105 ~~ri~~~~~~p~~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd---~~-~GGeT-~Fp~~~~~~ 178 (297)
..|+-.. ...-..-.|+.|. .|-.|-.|+|+.. +..|.+|.+.|||. +. .||.+ .||.....
T Consensus 132 ~~r~~~~----~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~~- 199 (280)
T KOG3710|consen 132 NGRLGSY----IIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGSTT- 199 (280)
T ss_pred ccccccc----cccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCCc-
Confidence 1111110 0112345688998 4678999999854 45799999999994 43 46664 58886421
Q ss_pred CCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCc
Q 022406 179 PRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 179 ~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 247 (297)
-..|.|+-+++||||| |.+-.|++.|+.+ .||.+|.|+....-
T Consensus 200 ------------------~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda~e 242 (280)
T KOG3710|consen 200 ------------------FADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDAKE 242 (280)
T ss_pred ------------------ccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEecccc
Confidence 4679999999999999 6788999999997 69999999976543
No 10
>smart00254 ShKT ShK toxin domain. ShK toxin domain
Probab=99.08 E-value=2.9e-11 Score=75.41 Aligned_cols=33 Identities=42% Similarity=1.112 Sum_probs=31.8
Q ss_pred cccCccccHhHhhcCccccCcccccccccCcchhhhhcCCC
Q 022406 257 CTDNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCKVC 297 (297)
Q Consensus 257 C~d~~~~C~~wa~~geC~~n~~~m~~~~~~~~~C~~sC~~C 297 (297)
|.|.+..|+.|| .|+| +||.||. .+|+||||+|
T Consensus 1 C~D~~~~C~~wa-~~~C-~~~~~~~------~~C~ktCg~C 33 (33)
T smart00254 1 CVDRHPDCAAWA-KGFC-TNPFYMK------SNCPKTCGFC 33 (33)
T ss_pred CCCCcccCcchh-hCcC-CChhHHH------hhhhhhcccC
Confidence 889999999999 9999 8899999 9999999998
No 11
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone). ShK is a powerful inhibitor of T lymphocyte voltage-gated potassium channels, in particular Kv1.3 []. It has been proposed that structural analogues may have use as an immunosuppressants for the prevention of graft rejection and for the treatment of autoimmune diseases []. The ShK toxin domain, is also found in one or more copies as a C-terminal domain in the metallopeptidases of Caenorhabditis elegans. The metallopeptidases belonging to MEROPS peptidase families: M10A, M12A and M14A. The majority belonging to M12A, the astacin/adamalysin family of metallopeptidases.; PDB: 1BGK_A 2K72_A.
Probab=98.79 E-value=1.1e-09 Score=70.16 Aligned_cols=36 Identities=36% Similarity=0.963 Sum_probs=29.3
Q ss_pred ccccCccccHhHhhcCccccCc--ccccccccCcchhhhhcCCC
Q 022406 256 DCTDNNASCERWAALGECTKNP--EYMVGSAQLPGFCRRSCKVC 297 (297)
Q Consensus 256 ~C~d~~~~C~~wa~~geC~~n~--~~m~~~~~~~~~C~~sC~~C 297 (297)
.|.|.+..|..|+..|+|.++. .||. .+|++|||+|
T Consensus 1 ~C~D~~~~C~~~~~~g~C~~~~~~~~m~------~~C~~tCg~C 38 (38)
T PF01549_consen 1 NCRDKNPNCATWANNGFCTNPFYQDFMR------KNCPKTCGFC 38 (38)
T ss_dssp ---S-HCHHHHHHCCTTTTTSH--HHHH------CCTTTTTT--
T ss_pred CCCCchhhhhhhhhhhhhcccccchhhh------chhcccCcCC
Confidence 4999999999999999999998 9999 9999999998
No 12
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.8e-07 Score=82.08 Aligned_cols=101 Identities=26% Similarity=0.291 Sum_probs=77.3
Q ss_pred cceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCC---CCCccc-ccCCCCCCCCCCCCCCCCCcchhhhcC
Q 022406 121 DIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDV---AKGGET-VFPNAEQEPPRRRTPATNDDLSECAKK 196 (297)
Q Consensus 121 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GGeT-~Fp~~~~~~~~~~~~~~~~~~~~C~~~ 196 (297)
+.|+.-|.+|.+|..|-|.+.+ ...|.+|.++|+|.. +.|||+ .|+..-...+ . +..
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~----------~---~~~ 197 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNT----------A---ADS 197 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccccc----------c---ccc
Confidence 6899999999999999999864 357999999999974 679999 6776521100 0 011
Q ss_pred CeeEecCcccEEEeeecCCCCCCCCCccccCCccc-ccceEEEEEEEeccC
Q 022406 197 GIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVI-EGEKWSATKWIHVDS 246 (297)
Q Consensus 197 ~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~Wi~~~~ 246 (297)
-.+|.|+-+..++|.+-. ..+.|.+.+|. .+.|.+++.|++...
T Consensus 198 ~~ti~P~fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 198 FKTIAPVFNSLVFFKSRP------SHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred ccccCCCCceEEEEEecC------CccceeccccccccceEEEeeEEecCC
Confidence 467999999999998732 23888888864 468999999998764
No 13
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.58 E-value=6.9e-08 Score=70.52 Aligned_cols=52 Identities=29% Similarity=0.511 Sum_probs=43.3
Q ss_pred CccceeeecCCCCccccccccccCcccccCCCceeEEEEEeec----CCCCCcccccCCC
Q 022406 119 GEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLS----DVAKGGETVFPNA 174 (297)
Q Consensus 119 ~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----d~~~GGeT~Fp~~ 174 (297)
.+.+++.+|..|++|++|+|..... .+.+|.+|+||||| +..+||++.|.+.
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 4678999999999999999997643 24789999999999 4457888999875
No 14
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.54 E-value=3.7e-07 Score=84.72 Aligned_cols=126 Identities=21% Similarity=0.279 Sum_probs=89.8
Q ss_pred cccccccccccCC-CchHHHHHHHHHHHHhc-C--CCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEE
Q 022406 83 SDVRTSSGTFIPK-GKDAIIAGIEDKIATWT-F--LPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLM 158 (297)
Q Consensus 83 ~~~R~s~~~~l~~-~~~~v~~~i~~ri~~~~-~--~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~li 158 (297)
...|.|..+.+.. ..+++.++|++.|..-+ . -.+...+.+.+++|.+|++|+.|.|..... .....-.++++
T Consensus 38 ~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~LvL 113 (339)
T PF03336_consen 38 HEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLVL 113 (339)
T ss_pred ccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEEE
Confidence 3478888877662 34678888877765432 1 123346789999999999999999954332 23567899999
Q ss_pred eecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEE
Q 022406 159 YLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSA 238 (297)
Q Consensus 159 YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~ 238 (297)
||+.+.+||+|.+.-.+.. .-.|.+ ++-|+| |....|++.+|.+|.|.+|
T Consensus 114 yL~~~~~GGktkiyi~~~~-------------------~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VA 163 (339)
T PF03336_consen 114 YLNNPENGGKTKIYIDPND-------------------NTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVA 163 (339)
T ss_pred EEeccCCCceEEEEECCCC-------------------ceeeec--cccEEE---------eccccccceEeccCeEEEE
Confidence 9999999999997632110 112433 667777 5689999999999999996
Q ss_pred EEEE
Q 022406 239 TKWI 242 (297)
Q Consensus 239 ~~Wi 242 (297)
..=+
T Consensus 164 l~dV 167 (339)
T PF03336_consen 164 LFDV 167 (339)
T ss_pred EEEE
Confidence 5433
No 15
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.42 E-value=1.5e-07 Score=72.68 Aligned_cols=90 Identities=26% Similarity=0.363 Sum_probs=56.9
Q ss_pred ccceeeecC---CCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcC
Q 022406 120 EDIQVLRYE---HGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKK 196 (297)
Q Consensus 120 E~~qv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~ 196 (297)
+.+++++|. .+..+.+|+|.. .+.+|++++ +++|++.|...+ .
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~--------------------~ 47 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG--------------------E 47 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT--------------------E
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc--------------------c
Confidence 468999999 889999999973 478999999 678888888753 1
Q ss_pred CeeEecCcccEEEeeec-C--CCCCCCCCccccCCcccccceEEEEEEEe
Q 022406 197 GIAVKPRRGDALLFFSL-H--TNAIPDPVSLHSGCPVIEGEKWSATKWIH 243 (297)
Q Consensus 197 ~~~V~P~~G~allF~n~-~--~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 243 (297)
.+.|.|..+.+++..-- . -.+......+|+++++.+|.|++++.|++
T Consensus 48 ~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 48 WVDVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp EEE----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred ccCccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 46777777665555421 1 12335678999999999999999999985
No 16
>PHA02866 Hypothetical protein; Provisional
Probab=98.28 E-value=2.9e-06 Score=77.18 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=92.9
Q ss_pred cccccceeeeCCCC-cccccccccccccccCCCchHHHHHHHHHHHHhcC--CCCCCCccceeeecCCCCcccccccccc
Q 022406 65 SQLKRSAVADNLSG-ESKLSDVRTSSGTFIPKGKDAIIAGIEDKIATWTF--LPKENGEDIQVLRYEHGQKYEPHYDYFS 141 (297)
Q Consensus 65 ~~~~~s~v~~~~~g-~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~~~--~p~~~~E~~qv~rY~~G~~y~~H~D~~~ 141 (297)
..|.+|.+.+...| +......|.+.++ +++..+++ |+.++.. -.+-..+.+.+.+|..|.+|.-|.|...
T Consensus 30 ~~w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~ 102 (333)
T PHA02866 30 NSWEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILT 102 (333)
T ss_pred hccchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEE
Confidence 34888988875555 3334456666654 67888777 5554431 1122356789999999999999999865
Q ss_pred CcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCC
Q 022406 142 DKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDP 221 (297)
Q Consensus 142 ~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~ 221 (297)
.+ ....+-.++++||+.+.+||+|.++-.+ -++--.+-+ ++| |.
T Consensus 103 ~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~----------------------~t~i~~~~D-vLF---------DK 146 (333)
T PHA02866 103 ED----RHRGREYTLVLHLSSPKNGGKTDVCVGD----------------------KTVISTADD-FLL---------EK 146 (333)
T ss_pred ec----cCCceEEEEEEEEeccccCCceEEEeCC----------------------CceEeeccc-eee---------ec
Confidence 43 1245679999999999999999998532 112222233 455 57
Q ss_pred CccccCCcccccceEEEEEE
Q 022406 222 VSLHSGCPVIEGEKWSATKW 241 (297)
Q Consensus 222 ~~lH~g~PV~~G~K~i~~~W 241 (297)
...|+..-|.+|+|.+|..=
T Consensus 147 sl~h~S~~V~~G~K~Vali~ 166 (333)
T PHA02866 147 RSEQLSNVVQEGEKIVVAVK 166 (333)
T ss_pred cccccceeeecCcEEEEEEE
Confidence 89999999999999877543
No 17
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.06 E-value=7.3e-05 Score=68.83 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=96.6
Q ss_pred EeccCCcEEEEcCCCCHHHHHHHHHHHhcccccceeeeCCCCc--ccccccccccccccCCCchHHHH------HHHHHH
Q 022406 37 QISWKPRAFVYEGFLTDLECDHLINLAKSQLKRSAVADNLSGE--SKLSDVRTSSGTFIPKGKDAIIA------GIEDKI 108 (297)
Q Consensus 37 ~ls~~P~i~~i~nfLs~~Ec~~li~~a~~~~~~s~v~~~~~g~--~~~~~~R~s~~~~l~~~~~~v~~------~i~~ri 108 (297)
.+..+. .+++++|||++|++.|.+..+..+....+.....+. ......|. .+.....++++. +|.+.+
T Consensus 24 ~f~~dG-yvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~ 99 (277)
T TIGR02408 24 SYERDG-FLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAA 99 (277)
T ss_pred HHHHCC-EEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHH
Confidence 333444 468999999999999999887644321111000000 00111221 111111234333 334445
Q ss_pred HHhcCCCCCCCccceeeecC-CCCccccccccccCcccccCCCceeEEEEEeecCCC-CCccccc-CCCCCCCCC-CCCC
Q 022406 109 ATWTFLPKENGEDIQVLRYE-HGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA-KGGETVF-PNAEQEPPR-RRTP 184 (297)
Q Consensus 109 ~~~~~~p~~~~E~~qv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~~-~~~~ 184 (297)
+.+.|-+.......-+.+.+ .|+.+.||.|...-.........+.+|+.|+|.|+. +.|.+.| |.+...... .+..
T Consensus 100 ~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~ 179 (277)
T TIGR02408 100 RQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGET 179 (277)
T ss_pred HHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCccc
Confidence 55555432221111123444 356788999974311000011236899999999986 4466655 554321100 0000
Q ss_pred CC---CC-------cchhh-------h-cCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc-ceEEEEEEE
Q 022406 185 AT---ND-------DLSEC-------A-KKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG-EKWSATKWI 242 (297)
Q Consensus 185 ~~---~~-------~~~~C-------~-~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~~~Wi 242 (297)
.. +. ...+. . .+-+.+.-++|++|+|. ..++|++-|-... .|+++..=+
T Consensus 180 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~---------~~~~H~S~~N~s~~~R~~l~l~y 247 (277)
T TIGR02408 180 PRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFD---------CNTMHGSGSNITPWPRSNVFMVF 247 (277)
T ss_pred cchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEc---------cccccCCCCCCCCCcceeEEEEE
Confidence 00 00 00000 0 11235667999999996 4899999998865 566655444
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=9.4e-05 Score=62.14 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=74.5
Q ss_pred cceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCC---CCCcccccCCCCCCCCCCCCCCCCCcchhhhcCC
Q 022406 121 DIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDV---AKGGETVFPNAEQEPPRRRTPATNDDLSECAKKG 197 (297)
Q Consensus 121 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~---~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~ 197 (297)
..-+++|++|++=..|.|..-+.. =-+-+++-||++ ++|||.++-...+.. | ...
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~-Q--------------SR~ 120 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRM-Q--------------SRA 120 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCc-c--------------Ccc
Confidence 367899999999999999864321 124677889986 589998886654321 1 136
Q ss_pred eeEecCcccEEEeeecC-CC-C---CCCCCccccCCcccccceEEEEEEEec
Q 022406 198 IAVKPRRGDALLFFSLH-TN-A---IPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 198 ~~V~P~~G~allF~n~~-~~-g---~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
..+.+++|+|+||..-+ |- | ---..+-|++.+|.+|+++++-.=||.
T Consensus 121 ~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 121 MVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred ccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 78999999999998532 21 2 223458899999999999999887764
No 19
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.64 E-value=0.00034 Score=59.81 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=85.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHhcc----ccc---ceeeeCCCCcccccccccccccccCCCc---hHHH-H-HHHHHHHH
Q 022406 43 RAFVYEGFLTDLECDHLINLAKSQ----LKR---SAVADNLSGESKLSDVRTSSGTFIPKGK---DAII-A-GIEDKIAT 110 (297)
Q Consensus 43 ~i~~i~nfLs~~Ec~~li~~a~~~----~~~---s~v~~~~~g~~~~~~~R~s~~~~l~~~~---~~v~-~-~i~~ri~~ 110 (297)
..++++|+|+++|++.|.+..... ... ..+... +. .......++.... +.+. . .+.+.+++
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFD--ES-----FFGDYTEQLAKSPNFYDLFLHPPRILDLVRA 77 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEES--TS-----CCCTCCCCGCCCHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccc--cc-----cccccccccccchhhHHHHhhHHHHHHHHHH
Confidence 357899999999999999888753 111 111110 00 0011111111100 1111 2 45555666
Q ss_pred hcCCCCC----CCccce-eeecC-CCCcc-ccccccccCcccccCCCceeEEEEEeecCCC-CCccccc-CCCCCCCCCC
Q 022406 111 WTFLPKE----NGEDIQ-VLRYE-HGQKY-EPHYDYFSDKVNIVRGGHRLATVLMYLSDVA-KGGETVF-PNAEQEPPRR 181 (297)
Q Consensus 111 ~~~~p~~----~~E~~q-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~~~ 181 (297)
+.+.... ....++ +.+-. .|... .||.|...-.. ....+.+|+.|+|.|+. +.|.+.+ |.+.......
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~ 154 (211)
T PF05721_consen 78 LLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEP 154 (211)
T ss_dssp HHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEE
T ss_pred hhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCccc
Confidence 6654422 112221 23333 46665 89999876431 11468999999999984 4555554 5542211110
Q ss_pred --CCCCCC--Ccc----hhh-hcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc
Q 022406 182 --RTPATN--DDL----SEC-AKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG 233 (297)
Q Consensus 182 --~~~~~~--~~~----~~C-~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 233 (297)
...... ... ... ....+.+..++|++|||. ..++|++-|-...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 155 HEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTSD 206 (211)
T ss_dssp ECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-SS
T ss_pred ccccccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCCc
Confidence 000000 000 111 123578999999999996 4899999986543
No 20
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.63 E-value=0.00069 Score=64.20 Aligned_cols=179 Identities=20% Similarity=0.290 Sum_probs=106.0
Q ss_pred cCCcE-EEEcCCCCHHHHHHHHHHHhc--ccccceeeeCCCCcccccccccccccccCC---CchHHHHHHHHHHHHhcC
Q 022406 40 WKPRA-FVYEGFLTDLECDHLINLAKS--QLKRSAVADNLSGESKLSDVRTSSGTFIPK---GKDAIIAGIEDKIATWTF 113 (297)
Q Consensus 40 ~~P~i-~~i~nfLs~~Ec~~li~~a~~--~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~---~~~~v~~~i~~ri~~~~~ 113 (297)
..|+- +++++|+.+...+.+...... ++++-.. +-- .--+..+.++-.++-.+. --+.+....+.-|+.++|
T Consensus 33 ngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k~t-Dly-r~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~q~vtg 110 (476)
T KOG3844|consen 33 NGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEKET-DLY-RVLQTGDLANLEGLEFPALFSFRDSLYKEARGEIQDVTG 110 (476)
T ss_pred cCCCcceeeeccCCHHHHHHHHHHHhhccchhhhcc-hhh-heeccccccccccccchhHHHHHHHHHHHHHHHHHhccC
Confidence 45653 789999998877777744433 2332111 000 000001122222211100 001122223334455554
Q ss_pred CCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCC----CCcccc-cCCCCCCCCCCCCCCCCC
Q 022406 114 LPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA----KGGETV-FPNAEQEPPRRRTPATND 188 (297)
Q Consensus 114 ~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~----~GGeT~-Fp~~~~~~~~~~~~~~~~ 188 (297)
--..-.-++-+..|..|.+--.|-|-. +.|.+++++||-|.. .||++. ||.... .| ++
T Consensus 111 ~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~--~~----P~-- 173 (476)
T KOG3844|consen 111 GLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCP--SQ----PK-- 173 (476)
T ss_pred ccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccccc--cC----cc--
Confidence 333334578899999999999998864 468899999999865 488876 665421 11 00
Q ss_pred cchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccc-eEEEEEEEeccCcccc
Q 022406 189 DLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGE-KWSATKWIHVDSFDKI 250 (297)
Q Consensus 189 ~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~-K~i~~~Wi~~~~~~~~ 250 (297)
+- -..+.|+-...++|.- -+.+.|.+.-|..-+ |.+++.|+|.....-|
T Consensus 174 --s~----~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~~~eP 223 (476)
T KOG3844|consen 174 --SV----AASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQIGEP 223 (476)
T ss_pred --ch----hhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCccCCC
Confidence 01 2458899999888864 358999999999765 4999999998765433
No 21
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.35 E-value=0.00038 Score=54.14 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=45.8
Q ss_pred eecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCc
Q 022406 125 LRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRR 204 (297)
Q Consensus 125 ~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~ 204 (297)
..|.+|++-.+|.= .+..++.++||+-++..|.+.|.+......- ...........-......|+|+.
T Consensus 5 ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~ 72 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSF-GAPFDNYDQNDLNSPYYIVEPEE 72 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGT-TS----TTTTCCC-SEEEE---T
T ss_pred EEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCcccee-cccccccccCcccCceEEeCCCC
Confidence 45667877777642 2358999999998888888998664321110 00000000011112357899999
Q ss_pred ccEEEeeecCCCCCCCCCccccCCccccc-ceEEE
Q 022406 205 GDALLFFSLHTNAIPDPVSLHSGCPVIEG-EKWSA 238 (297)
Q Consensus 205 G~allF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~ 238 (297)
|++|||++ .+.|++.|-... +|+++
T Consensus 73 G~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 73 GDLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TEEEEEET---------TSEEEE----SSS-EEEE
T ss_pred CEEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 99999997 799999998865 66654
No 22
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.11 E-value=0.019 Score=53.26 Aligned_cols=186 Identities=12% Similarity=0.091 Sum_probs=95.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhcccc-cceeeeCCCCcccccccccccccccCCCchHHH------HHHHHHHHHhc
Q 022406 40 WKPRAFVYEGFLTDLECDHLINLAKSQLK-RSAVADNLSGESKLSDVRTSSGTFIPKGKDAII------AGIEDKIATWT 112 (297)
Q Consensus 40 ~~P~i~~i~nfLs~~Ec~~li~~a~~~~~-~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~------~~i~~ri~~~~ 112 (297)
.+- .++++++||++|++.|.+.++..+. ++.......+. ..|.. |.....++.+ .+|.+.++.+.
T Consensus 13 e~G-yv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~ll 84 (288)
T TIGR01762 13 KNG-FIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLGG----TNIAN---YDRHLDDDFLASHICRPEICHRVESIL 84 (288)
T ss_pred hCC-EEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCCC----ceeEe---eeecccCHHHHHHhcCHHHHHHHHHHh
Confidence 344 4679999999999999998864332 21111000010 11111 1111112222 33445555666
Q ss_pred CCCCCCCccceeeecCCCCccccccccccCcccc--------cCCCceeEEEEEeecCCC-CCccccc-CCCCCCCCCC-
Q 022406 113 FLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNI--------VRGGHRLATVLMYLSDVA-KGGETVF-PNAEQEPPRR- 181 (297)
Q Consensus 113 ~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~~~- 181 (297)
|-++...-..-+.+...++...||.|..+-.... .....+.+|+.|-|.|+. +-|.+.| |.+.......
T Consensus 85 G~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~ 164 (288)
T TIGR01762 85 GPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDE 164 (288)
T ss_pred CCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCc
Confidence 5443222222344555555578999965422100 011247899999999985 4555544 4432210000
Q ss_pred -C----CCC-----------------------CCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc
Q 022406 182 -R----TPA-----------------------TNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG 233 (297)
Q Consensus 182 -~----~~~-----------------------~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 233 (297)
. +.. .+..+.......+.+.-++|++++|. ..++|++.|-+..
T Consensus 165 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N~S~ 235 (288)
T TIGR01762 165 TRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPNSGE 235 (288)
T ss_pred ccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCCCCC
Confidence 0 000 00001111112467777899999995 4899999999875
Q ss_pred c--eEEE-EEEE
Q 022406 234 E--KWSA-TKWI 242 (297)
Q Consensus 234 ~--K~i~-~~Wi 242 (297)
. |+.+ ..|+
T Consensus 236 ~~~R~~~~~ry~ 247 (288)
T TIGR01762 236 SQMRMGFASRYV 247 (288)
T ss_pred CceEEEEEEEEc
Confidence 3 5554 3366
No 23
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.79 E-value=0.0065 Score=53.40 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=60.5
Q ss_pred eeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecC
Q 022406 124 VLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPR 203 (297)
Q Consensus 124 v~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~ 203 (297)
+.++.+|++-..|+= .+..++-++||+.+..+|.+.|-+......-. ...............+.|+|+
T Consensus 100 ~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~-~~~~~~~~~~~~~~~~~v~P~ 167 (201)
T TIGR02466 100 VNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMA-APMRIPNAKRAVQRFVYVPPQ 167 (201)
T ss_pred EEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhc-cccccCccccccCccEEECCC
Confidence 566788887666642 24589999999998888888885422110000 000000000111235679999
Q ss_pred cccEEEeeecCCCCCCCCCccccCCcccc-cceEEEE
Q 022406 204 RGDALLFFSLHTNAIPDPVSLHSGCPVIE-GEKWSAT 239 (297)
Q Consensus 204 ~G~allF~n~~~~g~~D~~~lH~g~PV~~-G~K~i~~ 239 (297)
.|++|||+| .+.|++.|-.. ++|.++.
T Consensus 168 ~G~lvlFPS---------~L~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 168 EGRVLLFES---------WLRHEVPPNESEEERISVS 195 (201)
T ss_pred CCeEEEECC---------CCceecCCCCCCCCEEEEE
Confidence 999999997 79999999885 4776653
No 24
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.78 E-value=0.0055 Score=52.78 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=75.3
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcc--cccceeeeCCCCcccc---------------cccccccc-cccCC---CchHHHH
Q 022406 44 AFVYEGFLTDLECDHLINLAKSQ--LKRSAVADNLSGESKL---------------SDVRTSSG-TFIPK---GKDAIIA 102 (297)
Q Consensus 44 i~~i~nfLs~~Ec~~li~~a~~~--~~~s~v~~~~~g~~~~---------------~~~R~s~~-~~l~~---~~~~v~~ 102 (297)
+++++||||++|.+.|++..... +....... ++... ..++.+.. .+-.. ...+.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 68999999999999999988742 11111100 11000 11111111 00000 0134455
Q ss_pred HHHHHHHHhcC-CCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCC
Q 022406 103 GIEDKIATWTF-LPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRR 181 (297)
Q Consensus 103 ~i~~ri~~~~~-~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~ 181 (297)
.+.+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-.......
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~~~-- 144 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKSDD-- 144 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECGGT--
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeeccCC--
Confidence 56666655443 22222345678899999999999998632 12456777665 33333322110000
Q ss_pred CCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc
Q 022406 182 RTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG 233 (297)
Q Consensus 182 ~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 233 (297)
+..+.|.-..|+++++.. ...... |++.|+..+
T Consensus 145 -------------~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 145 -------------DEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp -------------S-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred -------------CccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 024788889999999963 223345 999998874
No 25
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.48 E-value=0.011 Score=50.73 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=59.3
Q ss_pred ccccccccccCcccccCCCceeEEEEEeecCC-CCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEe
Q 022406 132 KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDV-AKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLF 210 (297)
Q Consensus 132 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF 210 (297)
....|.|.... +--+|+++-|.-. ++||..++|..+... .+++|.|..|++|+|
T Consensus 86 ~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~~~-----------------~g~~~~~~~GtVl~~ 140 (171)
T PF12851_consen 86 CTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDPNI-----------------LGVAFAYQPGTVLIF 140 (171)
T ss_pred CccceecCCCC--------CCCeEEEEecCCccccCceEecccccccc-----------------CCEEEecCCCcEEEE
Confidence 34568887432 2346777766543 789999999833211 289999999999999
Q ss_pred eecCCCCCCCCCccccCCcccc-----cceEEEEEEEe
Q 022406 211 FSLHTNAIPDPVSLHSGCPVIE-----GEKWSATKWIH 243 (297)
Q Consensus 211 ~n~~~~g~~D~~~lH~g~PV~~-----G~K~i~~~Wi~ 243 (297)
-. ...+|++.||.. |+|+.+.-+.|
T Consensus 141 ~~--------~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 141 CA--------KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cc--------cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 64 369999999997 99999988776
No 26
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=96.34 E-value=0.14 Score=45.37 Aligned_cols=160 Identities=17% Similarity=0.193 Sum_probs=90.9
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhc-----ccccceeeeCC--------CCc----cccccccccccc-ccCCC---ch
Q 022406 40 WKPRAFVYEGFLTDLECDHLINLAKS-----QLKRSAVADNL--------SGE----SKLSDVRTSSGT-FIPKG---KD 98 (297)
Q Consensus 40 ~~P~i~~i~nfLs~~Ec~~li~~a~~-----~~~~s~v~~~~--------~g~----~~~~~~R~s~~~-~l~~~---~~ 98 (297)
..|.++++++|+ .++.++|++..+. .+..-.+-++. -|. +....+|-|... .-... -.
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P 94 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAMP 94 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCch
Confidence 568899999996 8888888776654 12221111000 010 001234443221 00111 13
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCC
Q 022406 99 AIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEP 178 (297)
Q Consensus 99 ~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~ 178 (297)
+.+..|.++++...+.+....+..-|..|.+|+.-.+|.|..... ...-++++-+ |.+-.|.......
T Consensus 95 ~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~~~ 162 (213)
T PRK15401 95 ASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGLKR 162 (213)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecccCC
Confidence 467888999988777543344568899999999999999974211 1223455543 3344454321100
Q ss_pred CCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc
Q 022406 179 PRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG 233 (297)
Q Consensus 179 ~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 233 (297)
. ....+|.-.-||+||+- |. ....+|++-|+..|
T Consensus 163 ~---------------~~~~~l~L~~Gdllvm~-----G~-sr~~~HgVp~~~~~ 196 (213)
T PRK15401 163 S---------------DPLQRILLEHGDVVVWG-----GP-SRLRYHGILPLKAG 196 (213)
T ss_pred C---------------CceEEEEeCCCCEEEEC-----ch-HhheeccCCcCCCC
Confidence 0 01468899999999984 32 23577999888765
No 27
>PHA02923 hypothetical protein; Provisional
Probab=95.67 E-value=0.051 Score=50.01 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHhcCC--CCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCC
Q 022406 98 DAIIAGIEDKIATWTFL--PKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAE 175 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~--p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~ 175 (297)
+++...|++.|-.-+.. .+.....+.+..|++|.+ .|. .....-..+++||+.++.||+|.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l----------~~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL----------TDDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee----------ecCceEEEEEEEEeccCCCCeEEEecCC
Confidence 56777777766543211 122344689999999985 111 0123778899999999999999998752
Q ss_pred CCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEE
Q 022406 176 QEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATK 240 (297)
Q Consensus 176 ~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 240 (297)
++--.+-+ ++| |....|+..-|.+|.|.+|-.
T Consensus 111 -----------------------t~i~~~~D-vLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 -----------------------TVITSSED-IMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred -----------------------CeEeeccc-eee---------ecccccceeeeecCcEEEEEE
Confidence 12222233 455 578999999999999998766
No 28
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.16 Score=43.35 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred eccCCcEEEEcCCCCHHHHHHHHHHHhcc----ccc---ceeeeCCCCcccccccccccccccCCCchHHHHHHHHHHHH
Q 022406 38 ISWKPRAFVYEGFLTDLECDHLINLAKSQ----LKR---SAVADNLSGESKLSDVRTSSGTFIPKGKDAIIAGIEDKIAT 110 (297)
Q Consensus 38 ls~~P~i~~i~nfLs~~Ec~~li~~a~~~----~~~---s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~v~~~i~~ri~~ 110 (297)
+...|.++.|+||+++||-..+.+-.+.. |+- -.... -+|- + .....++..-.+-.+.+.++|..
T Consensus 8 V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqN-yGGv-v------h~~glipeelP~wLq~~v~kinn 79 (224)
T KOG3200|consen 8 VKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQN-YGGV-V------HKTGLIPEELPPWLQYYVDKINN 79 (224)
T ss_pred ecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhh-cCCc-c------ccCCcCccccCHHHHHHHHHhhc
Confidence 56778999999999999999988877642 210 00110 0111 1 11123443335667777777776
Q ss_pred hcCCCCCCCccceeeecCCCCccccccccc
Q 022406 111 WTFLPKENGEDIQVLRYEHGQKYEPHYDYF 140 (297)
Q Consensus 111 ~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~ 140 (297)
+.-++. .....-|..|.+||---||.|+.
T Consensus 80 lglF~s-~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 80 LGLFKS-PANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred ccccCC-CcceeEeecccCCCCcCcCCCCC
Confidence 543332 34567888999999999999984
No 29
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=0.33 Score=41.85 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=71.3
Q ss_pred cceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCC---CCcccccCCCCCCCCCCCCCCCCCcchhhhcCC
Q 022406 121 DIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA---KGGETVFPNAEQEPPRRRTPATNDDLSECAKKG 197 (297)
Q Consensus 121 ~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~ 197 (297)
..-++.|++|.+=-.|.|-.-+-. =-+-+.|-|+|+. .|||-+.-...+.. | ...
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGelv-------FPLQvailLsePg~DfTGGEF~lvEQRPR~-Q--------------Sr~ 182 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGELV-------FPLQVAILLSEPGTDFTGGEFVLVEQRPRM-Q--------------SRP 182 (236)
T ss_pred CceeEEecCCccchhhhhhhhcee-------eeeeEEEeccCCCCcccCceEEEEeccccc-c--------------cCC
Confidence 356899999999999999864311 1255777799874 79997775543221 1 125
Q ss_pred eeEecCcccEEEeeecCC--CCC---CCCCccccCCcccccceEEEEEEEec
Q 022406 198 IAVKPRRGDALLFFSLHT--NAI---PDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 198 ~~V~P~~G~allF~n~~~--~g~---~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
-.|.-++|++++|--... .|+ --...-|++.-+.+|+++++-.=||.
T Consensus 183 ~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 183 TVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred ceeeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 678889999999974321 232 22347899999999999998777764
No 30
>KOG3371 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.028 Score=50.50 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=35.8
Q ss_pred EEEEEEeccCcccccCCccccccCccccHhHhhcCc--cccCcccccccccCcchhhhhcCCC
Q 022406 237 SATKWIHVDSFDKIVEEGGDCTDNNASCERWAALGE--CTKNPEYMVGSAQLPGFCRRSCKVC 297 (297)
Q Consensus 237 i~~~Wi~~~~~~~~~~~~~~C~d~~~~C~~wa~~ge--C~~n~~~m~~~~~~~~~C~~sC~~C 297 (297)
+++.|+...+ ...|.|....|..|++++. |.. -.|.. .||++||+.|
T Consensus 14 ~~~~~~~~~~-------~~~c~di~~~c~~w~~s~~~~r~~-~~f~~------~nc~~Sc~~c 62 (243)
T KOG3371|consen 14 CLFGLMGRKC-------ARKCRDIYKSCDRWKRSDHSSRPI-TEFFD------LNCATSCGNC 62 (243)
T ss_pred ccceeehhhh-------hhhhhhhhhhhhhhhhcCccccch-hHHhh------hhhhhhccCc
Confidence 4566775554 3469999999999999984 333 35666 8999999998
No 31
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=86.89 E-value=1 Score=40.37 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=54.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHhcc-cccceeee--CCCCccc---ccccccccccccCCCchHHHHHHHHHHHHhcCCC
Q 022406 42 PRAFVYEGFLTDLECDHLINLAKSQ-LKRSAVAD--NLSGESK---LSDVRTSSGTFIPKGKDAIIAGIEDKIATWTFLP 115 (297)
Q Consensus 42 P~i~~i~nfLs~~Ec~~li~~a~~~-~~~s~v~~--~~~g~~~---~~~~R~s~~~~l~~~~~~v~~~i~~ri~~~~~~p 115 (297)
|.|.+++||||.+|=.+|++..... +..|.-.. .+-|-.+ ....|+.. |.. .......+.+|+..+-.+.
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~--F~G--~P~~~~~v~rrm~~yp~l~ 147 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDT--FVG--MPEYADMVLRRMSEYPVLK 147 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCc--ccC--CchHHHHHHHHhhccchhh
Confidence 8899999999999999999998752 33332211 1112212 12344433 322 3456666777777654322
Q ss_pred CCCCccce--eeecC--CCCccccccccccC
Q 022406 116 KENGEDIQ--VLRYE--HGQKYEPHYDYFSD 142 (297)
Q Consensus 116 ~~~~E~~q--v~rY~--~G~~y~~H~D~~~~ 142 (297)
- ..++. =+.|. +|.--.+|.|..+.
T Consensus 148 g--fqp~EqCnLeYep~kgsaIdpH~DD~Wi 176 (306)
T KOG3959|consen 148 G--FQPFEQCNLEYEPVKGSAIDPHQDDMWI 176 (306)
T ss_pred c--cCcHHHcCcccccccCCccCccccchhh
Confidence 1 01111 23466 48889999998764
No 32
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=86.38 E-value=4.6 Score=36.89 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCcccc-ccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCC
Q 022406 98 DAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEP-HYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQ 176 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~-H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~ 176 (297)
..++..|++.+.+ +.-..+.+++..|+.|+-++. +.+ .....++|+-|.....||..++-....
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~~ 96 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTIS 96 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeeccc
Confidence 4556666666533 333467899999999998753 222 246788999999999999877655322
Q ss_pred CCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCc
Q 022406 177 EPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 177 ~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 247 (297)
. ..-.++|..|.||+-. +.....+.+|++|.-.+++.=+...+-
T Consensus 97 ~------------------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l~idIPSm 140 (266)
T PF06822_consen 97 N------------------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVLDIDIPSM 140 (266)
T ss_pred C------------------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEEEeccCcc
Confidence 1 1468999999999974 568888999999998888776655543
No 33
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=86.34 E-value=16 Score=31.93 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=59.6
Q ss_pred cccccccccCCCchHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCce--eEEEEEeecC
Q 022406 85 VRTSSGTFIPKGKDAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHR--LATVLMYLSD 162 (297)
Q Consensus 85 ~R~s~~~~l~~~~~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R--~~T~liYLnd 162 (297)
+|.+....+.....+....+...+...++.+....|..-+..|.+|..-.+|.|-... ..+ ++++-+=
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~-------~~~~~v~slSLg--- 140 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEE-------DDRPPVASLSLG--- 140 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccc-------cCCCceEEEecC---
Confidence 5555544444322244445556666677877777788999999999999999997543 223 3444432
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEee
Q 022406 163 VAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFF 211 (297)
Q Consensus 163 ~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~ 211 (297)
....|-....... +...++.-..|++|++-
T Consensus 141 ----~~~~F~~~~~~r~---------------~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 141 ----APCIFRLRGRRRR---------------GPGLRLRLEHGDVVVMG 170 (194)
T ss_pred ----CCeEEEeccccCC---------------CCceeEEecCCCEEEec
Confidence 2233322211100 12678999999999994
No 34
>PLN02485 oxidoreductase
Probab=86.00 E-value=5.2 Score=37.66 Aligned_cols=48 Identities=13% Similarity=0.033 Sum_probs=32.7
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|.+||--- .+.+| .-..++|++.+....+||++.-+++-.
T Consensus 237 Wi~V~p~pg~~vVNiGD~L~~~TnG-~~~St~HRVv~~~~~~R~Si~~F~~p~ 288 (329)
T PLN02485 237 WIWAIPIPGTFVCNIGDMLKIWSNG-VYQSTLHRVINNSPKYRVCVAFFYETN 288 (329)
T ss_pred EEECCCCCCcEEEEhHHHHHHHHCC-EeeCCCceecCCCCCCeEEEEEEecCC
Confidence 6899999998887321 11222 234689999865555799998888543
No 35
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.95 E-value=7.8 Score=36.79 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=53.5
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++++|.+-. .-.+|.|+. .+|+|+- |. .||=-+..+.
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q--d~-v~GLQV~~~g-------------------- 245 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ--DE-VGGLEVMKDG-------------------- 245 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe--CC-CCCeeEeeCC--------------------
Confidence 48899998632 234677752 5788854 32 3553333221
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCC-cccccceEEEEEEEecc
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGC-PVIEGEKWSATKWIHVD 245 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~-PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|.|..|.+||--- .+.||. -..++|++- +-...+||++.-+++-.
T Consensus 246 -~Wv~V~p~pgalVVNiGD~Le~wTNg~-~kSt~HRVv~~~~~~~R~Sia~F~~P~ 299 (341)
T PLN02984 246 -EWFNVKPIANTLVVNLGDMMQVISDDE-YKSVLHRVGKRNKKKERYSICYFVFPE 299 (341)
T ss_pred -ceEECCCCCCeEEEECChhhhhhcCCe-eeCCCCccccCCCCCCeEEEEEEecCC
Confidence 26899999999888421 122332 246889994 33345799888877443
No 36
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.79 E-value=6.3 Score=36.00 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCCCC--------CccceeeecCCC------CccccccccccCcccccCCCceeEEEEEeecCCCC
Q 022406 100 IIAGIEDKIATWTFLPKEN--------GEDIQVLRYEHG------QKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAK 165 (297)
Q Consensus 100 v~~~i~~ri~~~~~~p~~~--------~E~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~ 165 (297)
+..+|.+-|+...|++... ...+++++|.+- -...+|.|. -.+|+|+- ++ .
T Consensus 88 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~------------g~lTlL~q-d~--v 152 (262)
T PLN03001 88 LAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDF------------GAITLLIQ-DD--V 152 (262)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCC------------CeeEEEEe-CC--C
Confidence 3444444445555665221 124788888752 124467775 26788754 33 3
Q ss_pred CcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEE
Q 022406 166 GGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKW 241 (297)
Q Consensus 166 GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W 241 (297)
||=-+..+. ..+.|+|..|..||--- ...|| .-..++|++.-....+||++.-+
T Consensus 153 ~GLqV~~~g---------------------~Wi~V~p~p~a~vVNiGD~l~~~tng-~~~S~~HRVv~~~~~~R~Sia~F 210 (262)
T PLN03001 153 EGLQLLKDA---------------------EWLMVPPISDAILIIIADQTEIITNG-NYKSAQHRAIANANKARLSVATF 210 (262)
T ss_pred CceEEeeCC---------------------eEEECCCCCCcEEEEccHHHHHHhCC-ccccccceEEcCCCCCEEEEEEE
Confidence 553333221 26899999998877311 12233 23468899975545679999888
Q ss_pred Eecc
Q 022406 242 IHVD 245 (297)
Q Consensus 242 i~~~ 245 (297)
++-.
T Consensus 211 ~~p~ 214 (262)
T PLN03001 211 HDPA 214 (262)
T ss_pred EcCC
Confidence 7543
No 37
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.71 E-value=10 Score=35.78 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=53.8
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+-. ...+|.|.. .+|+|+ .|...||=-++.+.
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~GLQV~~~g-------------------- 236 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILL--QDQQVAGLQVLKDG-------------------- 236 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEE--ecCCcCceEeecCC--------------------
Confidence 47888888631 134676652 577774 34334553344321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|+|..|.+||--- ...|| .-..++|++-..-..+||++.-+++-.
T Consensus 237 -~Wi~V~p~pg~lVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 237 -KWVAVNPHPGAFVINIGDQLQALSNG-RYKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred -eEEeccCCCCeEEEechhHHHHHhCC-eeeccCcccccCCCCCEEEEEEEecCC
Confidence 26899999999888321 11222 234689998543346899998888643
No 38
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.21 E-value=7.9 Score=36.82 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=54.8
Q ss_pred cceeeecCCC------CccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHG------QKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+- -...+|.|.. .+|+| +.|...||=-+..+.
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~g-------------------- 249 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLL--LPDKDVEGLQFLKDG-------------------- 249 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEE--EecCCCCceeEeECC--------------------
Confidence 3789999752 1234677752 57777 444334553333221
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|.|..|.+||--- .+.|| .-..++|++-+...++||++.-+++-.
T Consensus 250 -~Wi~V~p~pg~lVVNiGD~Le~~Tng-~~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 250 -KWYKAPIVPDTILINVGDQMEIMSNG-IYKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred -eEEECCCCCCcEEEEcChHHHHHhCC-eecccceEEecCCCCCEEEEEEEecCC
Confidence 26899999999887421 11222 235789999755566899998888643
No 39
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.91 E-value=20 Score=33.84 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCC--CCcccccCCCC
Q 022406 98 DAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA--KGGETVFPNAE 175 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~--~GGeT~Fp~~~ 175 (297)
.++.+.|.+|+-.|--+|. .-+.+-|..|++|+.-.+|+|... ..+ -...+.+|+|.. -|=....-...
T Consensus 189 Ps~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~-Pi~slS~lSe~~m~Fg~~~~~~~~~ 259 (323)
T KOG4176|consen 189 PSLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLD-PISSLSFLSECTMEFGHGLLSDNIG 259 (323)
T ss_pred chHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcC-ceEEEEeecceeEEecccccccCcc
Confidence 4577888888888777775 456788999999999999996532 233 344455677753 12222221111
Q ss_pred CCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccCc
Q 022406 176 QEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 176 ~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 247 (297)
. . .+-+.+.-+.|.+++-.+... ....|+++|+. .|.+..++...++.
T Consensus 260 ~--~---------------~g~~s~p~~~g~~lvi~~~~a-----d~~~~~~~~~~--~kRisitfrki~~~ 307 (323)
T KOG4176|consen 260 N--F---------------RGSLSLPLRYGSVLVIRGRSA-----DVAPHCIRPSR--NKRISITFRKIRPD 307 (323)
T ss_pred c--c---------------ccccccccccCeEEEeCCCcc-----cccccccCCCC--CceEEEEEEEeccC
Confidence 0 0 012566777788877765332 25779999843 57777778877764
No 40
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=81.75 E-value=6.7 Score=36.90 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=55.3
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++++|.+-. -..+|.|. -.+|+| +.|...||=-+..+.
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~------------g~lTlL--~qd~~v~GLQV~~~g-------------------- 204 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDA------------GGIILL--FQDDKVSGLQLLKDG-------------------- 204 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCC------------CeEEEE--EecCCCCCcCcccCC--------------------
Confidence 36889998521 24477776 267877 444334553343221
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|+|..|.+||--- ...||. -..+.|++.....++||++.-+++-.
T Consensus 205 -~Wi~V~p~pg~lvVNiGD~l~~~Tng~-~kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 205 -EWVDVPPMRHSIVVNLGDQLEVITNGK-YKSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred -eEEECCCCCCeEEEEeCHHHHHHhCCc-eecccceeecCCCCCEEEEEEEecCC
Confidence 26889999998887421 122332 35689999754567899998888644
No 41
>PLN02216 protein SRG1
Probab=81.06 E-value=9.1 Score=36.56 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=31.2
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
.+.|+|..|..||=-- ...|| .-..++|++-.....+|+++.-+++-
T Consensus 258 Wi~V~p~pgalvVNiGD~L~~~TNG-~~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 258 WVSVKPLPNALVVNVGDILEIITNG-TYRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred EEECCCCCCeEEEEcchhhHhhcCC-eeeccCceeecCCCCCEEEEEEEecC
Confidence 6899999998887321 11223 23468899854445679988887753
No 42
>PLN02904 oxidoreductase
Probab=80.89 E-value=14 Score=35.20 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=31.6
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
.+.|+|..|..||--- ...|| .-..++|++-.-...+||++.-+++-
T Consensus 255 Wi~V~p~pgalVVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 255 WVCVPYIEGALIVQLGDQVEVMSNG-IYKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCC-eeeccCCcccCCCCCCEEEEEEeecC
Confidence 6899999999888321 11222 23578999964445689999888754
No 43
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=78.16 E-value=5.7 Score=31.70 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=42.8
Q ss_pred CCchhhhHHHHHHHHhhhhhhccCCCccccCCceeEEeccCCc-EEEEcCCCCHHHHHHHH
Q 022406 1 MSPTRLSLNFFFLLSFSLLIRKSFSSTAIINPSKVKQISWKPR-AFVYEGFLTDLECDHLI 60 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~kve~ls~~P~-i~~i~nfLs~~Ec~~li 60 (297)
|.||+-.+---+.-.+.++.|+.|+-. |..+...=.++. |+.+.++||+.|-.-+-
T Consensus 1 m~~tk~~lE~~is~~i~k~~ke~~GkG----P~~i~~~i~~~~iiv~l~g~LTp~Ek~L~~ 57 (118)
T PF10057_consen 1 MKKTKGELEQEISNAIRKFYKEYFGKG----PKSIKVTISDDMIIVRLEGFLTPAEKFLAE 57 (118)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhCCC----CcEEEEEEECCEEEEEEECCCCHHHHHHHh
Confidence 788888888888889999999999887 556554334444 56699999999865433
No 44
>PLN02276 gibberellin 20-oxidase
Probab=77.35 E-value=17 Score=34.81 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=53.7
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+-. .-.+|+|+ -.+|+|+- | ..||=-++.+.
T Consensus 207 ~lrl~~YP~~~~~~~~~g~~~HTD~------------g~lTlL~Q--d-~v~GLQV~~~g-------------------- 251 (361)
T PLN02276 207 IMRCNYYPPCQEPELTLGTGPHCDP------------TSLTILHQ--D-QVGGLQVFVDN-------------------- 251 (361)
T ss_pred eeeeEeCCCCCCcccccCCccccCC------------ceeEEEEe--c-CCCceEEEECC--------------------
Confidence 47888897531 13466665 26788753 4 34564444321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
..+.|+|..|.+||--- ...|| .-..++|++-.-...+||++.-+++-
T Consensus 252 -~Wi~V~p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 252 -KWRSVRPRPGALVVNIGDTFMALSNG-RYKSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred -EEEEcCCCCCeEEEEcHHHHHHHhCC-ccccccceeecCCCCCEEEEEEEecC
Confidence 26899999999988431 11222 23578999754345689998888754
No 45
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=76.72 E-value=12 Score=34.95 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=31.3
Q ss_pred CeeEecCcccEEEeeec------CCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFSL------HTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n~------~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|.|..|+++|- |+ ..|| .-..++|++-....++||++.-+++-.
T Consensus 201 Wi~V~p~p~~~lvV-NvGD~L~~~Tng-~~~S~~HRVv~~~~~~R~Si~~F~~p~ 253 (303)
T PLN02403 201 WVPIPPSKNNTIFV-NTGDQLEVLSNG-RYKSTLHRVMADKNGSRLSIATFYNPA 253 (303)
T ss_pred EEECCCCCCCEEEE-EehHHHHHHhCC-eeecccceeecCCCCCEEEEEEEEcCC
Confidence 68899999654433 21 1233 234688999766667899998888644
No 46
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=76.33 E-value=25 Score=29.93 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCcccccccc
Q 022406 98 DAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDY 139 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~ 139 (297)
.+.+..|.++|++..+.+....+..-|..|.+|+.-.+|.|.
T Consensus 73 P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 73 PQDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 367888999999888765444567788899999999999995
No 47
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.44 E-value=16 Score=34.70 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=54.6
Q ss_pred cceeeecCCC------CccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHG------QKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+- -.-.+|.|. -.+|+|+- | ..||=-++.+.
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~------------g~lTlL~Q--d-~v~GLQV~~~g-------------------- 242 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDA------------NLITVLLQ--D-EVSGLQVFKDG-------------------- 242 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCC------------CceEEEEE--C-CCCceEEEECC--------------------
Confidence 4788889862 113467775 25788744 4 24554444321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEeccC
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDS 246 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~ 246 (297)
..+.|+|..|..||--- ...|| .-..++|++-....++||++.-+++-..
T Consensus 243 -~Wi~V~p~pgalvVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p~~ 296 (348)
T PLN02912 243 -KWIAVNPIPNTFIVNLGDQMQVISND-KYKSVLHRAVVNTDKERISIPTFYCPSE 296 (348)
T ss_pred -cEEECCCcCCeEEEEcCHHHHHHhCC-EEEcccccccCCCCCCEEEEEEEecCCC
Confidence 26899999999887421 11233 2347899985444568999988886443
No 48
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.06 E-value=31 Score=32.68 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=32.5
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|..||=-- .+.|| .-..++|++......+||++.-+++-.
T Consensus 242 Wi~V~p~pg~~vVNiGD~L~~~Tng-~~~St~HRVv~~~~~~R~Si~~F~~P~ 293 (345)
T PLN02750 242 WIPVKPIPDAFIINIGNCMQVWTND-LYWSAEHRVVVNSQKERFSIPFFFFPS 293 (345)
T ss_pred EEEccCCCCeEEEEhHHHHHHHhCC-eeecccceeccCCCCCEEEEEEeecCC
Confidence 6899999998887210 11223 235689999755556899998888544
No 49
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=73.64 E-value=18 Score=33.53 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=32.1
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|.|..|..||=-- .+.|| .-..++|++......+||++.-+++-.
T Consensus 199 Wi~V~p~pga~vVNiGD~l~~~TNG-~~~St~HRVv~~~~~~R~Si~~F~~p~ 250 (300)
T PLN02365 199 FVPVDPLPGTLLVNLGDVATAWSNG-RLCNVKHRVQCKEATMRISIASFLLGP 250 (300)
T ss_pred EEecCCCCCeEEEEhhHHHHHHhCC-ceecccceeEcCCCCCEEEEEEEecCC
Confidence 6899999999888321 11233 235789998754455799988877533
No 50
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.64 E-value=5.7 Score=34.46 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=32.7
Q ss_pred EEEeecCCC--CCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccc
Q 022406 156 VLMYLSDVA--KGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIE 232 (297)
Q Consensus 156 ~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~ 232 (297)
+.|.+-|-+ .||||..+..+... .+..---..|.+++-. |++.+|.+||+..
T Consensus 148 I~I~~vDR~NI~gGet~lY~~~~~~-----------------p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 148 IIIMLVDRQNIDGGETDLYAPDGAS-----------------PGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEEeeeccccCceEEEEccCCCC-----------------cceEEeccCCcEEEec--------cchhcccccceec
Confidence 444555543 69999876542110 1344444567777653 7899999999874
No 51
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=73.62 E-value=22 Score=34.01 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=31.3
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
.+.|.|..|..||--- ...|| .-..++|++-.....+||++.-+++-
T Consensus 260 Wi~V~p~pgalVVNiGD~L~~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~P 310 (361)
T PLN02758 260 WVPVHPVPNALVINIGDTLEVLTNG-KYKSVEHRAVTNKEKDRLSIVTFYAP 310 (361)
T ss_pred EEeCCCCCCeEEEEccchhhhhcCC-eeecccceeecCCCCCEEEEEEEecC
Confidence 6889999998887431 11222 23578999965444578888877753
No 52
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=73.60 E-value=13 Score=37.21 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=56.6
Q ss_pred ecCCCCccccccccccCcccccCCCceeEEEEEeecCCC-CCcccccCCCCC-CC-C------CCC--C---CCCCCcch
Q 022406 126 RYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA-KGGETVFPNAEQ-EP-P------RRR--T---PATNDDLS 191 (297)
Q Consensus 126 rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~Fp~~~~-~~-~------~~~--~---~~~~~~~~ 191 (297)
.|..| .||+++.- +.+-.+|.|+|+.... ....+.|-.... .. . |.. . .-.-....
T Consensus 359 ~Y~gg---~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~ 428 (501)
T PF14033_consen 359 EYPGG---SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGG 428 (501)
T ss_pred CCCCC---CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCc
Confidence 56544 68998854 3567899999997432 233555644321 10 0 000 0 00000001
Q ss_pred hhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccc------ccceEEEEEEEe
Q 022406 192 ECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVI------EGEKWSATKWIH 243 (297)
Q Consensus 192 ~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~------~G~K~i~~~Wi~ 243 (297)
.|-+.-=+|.-+.|++|+|+|+ ..|.+.|.. .|.+-+++-|+=
T Consensus 429 ~~~q~~Gsv~~~~gr~i~fPN~---------~qhrv~~f~L~D~tkpGhrkil~lfLv 477 (501)
T PF14033_consen 429 PAVQELGSVETKEGRLIAFPNT---------LQHRVSPFELADPTKPGHRKILALFLV 477 (501)
T ss_pred cceEEcCcEEccCCcEEeccch---------hhhccCCccccCCCCCCcEEEEEEEec
Confidence 1222223688899999999995 667777543 698888888873
No 53
>PLN02947 oxidoreductase
Probab=73.37 E-value=24 Score=33.95 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=52.9
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+-. ...+|.|. -.+|+|+- ++ .||=-++.+.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~------------g~lTlL~Q-d~--v~GLQV~~~g-------------------- 270 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDY------------GFLTLLLQ-DE--VEGLQIMHAG-------------------- 270 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCC------------CceEEEEe-cC--CCCeeEeECC--------------------
Confidence 36777888631 23456665 36888855 33 3554444321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|+|..|.+||--- ...||. -..++|++-.....+|+++.-+++-.
T Consensus 271 -~Wi~V~p~pga~VVNvGD~Lq~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 271 -RWVTVEPIPGSFVVNVGDHLEIFSNGR-YKSVLHRVRVNSTKPRISVASLHSLP 323 (374)
T ss_pred -EEEeCCCCCCeEEEEeCceeeeeeCCE-EeccccccccCCCCCEEEEEEEecCC
Confidence 26889999988777321 112332 24689999544456899988888543
No 54
>PLN02997 flavonol synthase
Probab=73.10 E-value=15 Score=34.52 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=54.3
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+-. .-.+|.|. -.+|+|+- |. .||=-+..+.
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~------------g~lTlL~Q--d~-v~GLQV~~~g-------------------- 228 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDM------------GAIALLIP--NE-VPGLQAFKDE-------------------- 228 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCC------------CceEEEec--CC-CCCEEEeECC--------------------
Confidence 47888898631 24567765 26788843 32 4563344321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEeccC
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDS 246 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~ 246 (297)
..+.|+|..|.+||--- ...|| .-..++|++..-...+||++.-+++-..
T Consensus 229 -~Wi~V~p~pgalvVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 229 -QWLDLNYINSAVVVIIGDQLMRMTNG-RFKNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred -cEEECCCCCCeEEEEechHHHHHhCC-ccccccceeeCCCCCCEEEEEEEecCCC
Confidence 26899999998887421 11233 2346889996444457998888875443
No 55
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=73.07 E-value=16 Score=34.85 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=33.0
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|.+||=-- ...||. -..++|++-....++||++.-+++-.
T Consensus 244 Wi~Vpp~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P~ 295 (358)
T PLN02515 244 WITVQPVEGAFVVNLGDHGHYLSNGR-FKNADHQAVVNSNCSRLSIATFQNPA 295 (358)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCe-eeeecceEECCCCCCEEEEEEEecCC
Confidence 6899999998887321 112332 35789998655556899998888654
No 56
>PHA02985 hypothetical protein; Provisional
Probab=71.84 E-value=26 Score=32.01 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccceeeecCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCC
Q 022406 98 DAIIAGIEDKIATWTFLPKENGEDIQVLRYEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQE 177 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~ 177 (297)
..++..|++++.+ +.-..+.+++..|+.|+.|. |. ...++..+|+-+..+..||..+--+-...
T Consensus 39 ~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~-~~-----------~~~~~SkilICiqsAkkGG~iIi~~~~~~ 102 (271)
T PHA02985 39 KIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYY-QN-----------IPSRLSKIIICIQSAKKGGCIIIINNITN 102 (271)
T ss_pred hHHHHHHHHhcCC----eEEecceeEEEEEcCCcceE-ee-----------CCCCceeEEEEEeecccCCEEEEeccccc
Confidence 4566666666633 33345679999999886653 11 23467889999999999998775332110
Q ss_pred CCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccC
Q 022406 178 PPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDS 246 (297)
Q Consensus 178 ~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~ 246 (297)
..-.++|..|.||+-. |.+-..+.+|.+|.-.++..=+...+
T Consensus 103 ------------------~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~l~idIPS 144 (271)
T PHA02985 103 ------------------NKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIVLDIDIPS 144 (271)
T ss_pred ------------------CceEEecCCCeEEEec---------chhhceEEEecCCcEEEEEEEecCCc
Confidence 2467999999999974 56888999999998877776665443
No 57
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=71.76 E-value=0.8 Score=44.71 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=57.8
Q ss_pred CceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCc
Q 022406 150 GHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCP 229 (297)
Q Consensus 150 ~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~P 229 (297)
+-+....++|+||+++||+..|...+..+. ...++|+-|+.+-|.+- ....|.+.+
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t~-----------------~a~~k~~~~re~~~~~g-------~e~~~~~~~ 419 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKTY-----------------TAISKPECGRECAFSSG-------AENPHGVKA 419 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccch-----------------hhccccccccchhhhcc-------ccCccchhh
Confidence 346778899999999999999865433322 46799999999998752 245699999
Q ss_pred ccccceEEEEEEEeccCc
Q 022406 230 VIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 230 V~~G~K~i~~~Wi~~~~~ 247 (297)
|++|..-.+..|....+-
T Consensus 420 ~~kg~e~~~~lw~~~~~~ 437 (471)
T KOG4459|consen 420 VTKGLECAVALWPTLAPL 437 (471)
T ss_pred hhhhhHHhhhcCcccChh
Confidence 999988778889877764
No 58
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=70.64 E-value=34 Score=32.69 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=53.3
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
.+++.+|.+-. .-.+|.|. -.+|+|+- ++ .||=-++.+.+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~------------g~lTiL~Q-d~--v~GLQV~~~~~------------------- 256 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDS------------SLLTILYQ-SN--TSGLQVFREGV------------------- 256 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCC------------CcEEEEec-CC--CCCceEECCCC-------------------
Confidence 46788888621 24567765 36888864 32 35644444321
Q ss_pred cCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 195 KKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
..+.|+|..|.+||--- ...|| .-..++|++-.-...+|+++.-+++-
T Consensus 257 -~Wi~V~p~pgalVVNiGD~lq~~SNg-~~kS~~HRVv~~~~~~R~Sia~F~~P 308 (358)
T PLN02254 257 -GWVTVPPVPGSLVVNVGDLLHILSNG-RFPSVLHRAVVNKTRHRISVAYFYGP 308 (358)
T ss_pred -EEEEcccCCCCEEEEhHHHHHHHhCC-eeccccceeecCCCCCEEEEEEEecC
Confidence 26899999999988421 11233 23578999843334578888877743
No 59
>PTZ00273 oxidase reductase; Provisional
Probab=70.17 E-value=47 Score=30.97 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=31.4
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|.+||--- ...|| .-..++|++... ..+||++.-+++-.
T Consensus 226 Wi~V~p~pg~lvVNvGD~l~~~TnG-~~kSt~HRVv~~-~~~R~Si~~F~~p~ 276 (320)
T PTZ00273 226 WMDVPPLEGSFVVNIGDMMEMWSNG-RYRSTPHRVVNT-GVERYSMPFFCEPN 276 (320)
T ss_pred EEeCCCCCCeEEEEHHHHHHHHHCC-eeeCCCccccCC-CCCeEEEEEEEcCC
Confidence 6899999999887421 12233 234689999643 35899988888544
No 60
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=70.16 E-value=35 Score=32.63 Aligned_cols=48 Identities=19% Similarity=0.061 Sum_probs=31.3
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|.|..|.+||--- ...|| .-..++|++-.-...+||++.-+++-.
T Consensus 261 W~~V~p~pgalVVNiGD~l~~~Tng-~~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 261 WITVKPVPDAFIVNIGDQIQVLSNA-IYKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred EEECCCCCCeEEEEcchhhHhhcCC-eeeccceecccCCCCCEEEEEEEecCC
Confidence 6889999998887321 11222 224689999543345799998888544
No 61
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=68.38 E-value=27 Score=32.90 Aligned_cols=85 Identities=26% Similarity=0.285 Sum_probs=54.9
Q ss_pred cceeeecCCCC------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhh
Q 022406 121 DIQVLRYEHGQ------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECA 194 (297)
Q Consensus 121 ~~qv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~ 194 (297)
-+++.+|.+-- -..+|.|. ..+|+| |.|...||=-+|...+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~------------~~lTiL--lqd~~V~GLQv~~~dg------------------- 223 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDK------------SFLTIL--LQDDDVGGLQVFTKDG------------------- 223 (322)
T ss_pred EEEEeecCCCcCccccccccCccCc------------CceEEE--EccCCcCceEEEecCC-------------------
Confidence 57788888631 24567775 247777 5554567877775211
Q ss_pred cCCeeEecCcccEEEeeec------CCCCCCCCCccccCCcccccceEEEEEEE
Q 022406 195 KKGIAVKPRRGDALLFFSL------HTNAIPDPVSLHSGCPVIEGEKWSATKWI 242 (297)
Q Consensus 195 ~~~~~V~P~~G~allF~n~------~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi 242 (297)
..+.|+|.+|..|| |+ ..|| .-...+|++..-...+|+++-.++
T Consensus 224 -~Wi~V~P~p~a~vV--NiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~ 273 (322)
T KOG0143|consen 224 -KWIDVPPIPGAFVV--NIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFV 273 (322)
T ss_pred -eEEECCCCCCCEEE--EcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEe
Confidence 27999999977666 32 1233 234689999987777888776666
No 62
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=67.88 E-value=3.5 Score=35.97 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=32.5
Q ss_pred ceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCcc
Q 022406 151 HRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPV 230 (297)
Q Consensus 151 ~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV 230 (297)
.-.++.+|--+++ +||+|.....+... .....--..|+.+++. |...+|.+.||
T Consensus 124 d~v~~~li~r~Ni-~GG~s~i~~~~~~~-----------------~~~~~l~~p~d~l~~~--------D~~~~H~vtpI 177 (195)
T PF10014_consen 124 DFVFIHLINRHNI-EGGESQIYDNDKEI-----------------LFFFTLLEPGDTLLVD--------DRRVWHYVTPI 177 (195)
T ss_dssp SEEEEEEEEEESE-EE--EEEEETTSSE-----------------EEEE---STTEEEEEE--------TTTEEEEE--E
T ss_pred CEEEEEEEcCCCc-cCceEEEEeCCCCc-----------------ceEEEecCCCCEEEEe--------CCcceECCCce
Confidence 4567777777666 78887764332110 1234455669999985 78999999999
Q ss_pred cc
Q 022406 231 IE 232 (297)
Q Consensus 231 ~~ 232 (297)
..
T Consensus 178 ~~ 179 (195)
T PF10014_consen 178 RP 179 (195)
T ss_dssp EE
T ss_pred ec
Confidence 84
No 63
>PLN02704 flavonol synthase
Probab=67.02 E-value=18 Score=34.08 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=32.4
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|.+||--- .+.|| .-..++|++...-..+||++.-+++-.
T Consensus 246 Wi~V~p~pg~lvVNvGD~L~~~TNg-~~kSt~HRVv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 246 WFDVKYIPNALVIHIGDQIEILSNG-KYKSVLHRTTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred EEeCCCCCCeEEEEechHHHHHhCC-eeecccceeecCCCCCeEEEEEEecCC
Confidence 6899999998877421 11222 235689999644455799998888644
No 64
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=65.85 E-value=13 Score=35.66 Aligned_cols=40 Identities=25% Similarity=0.558 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCccceeeecC-CCCcccccccccc
Q 022406 98 DAIIAGIEDKIATWTFLPKENGEDIQVLRYE-HGQKYEPHYDYFS 141 (297)
Q Consensus 98 ~~v~~~i~~ri~~~~~~p~~~~E~~qv~rY~-~G~~y~~H~D~~~ 141 (297)
++-+.++++ .+..+|.-...++.|. |. +||-|++|+|...
T Consensus 100 ~p~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YD 140 (383)
T COG2850 100 HPEVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYD 140 (383)
T ss_pred CHHHHHHHH---HhccCccccccceEEE-EecCCCccCccccchh
Confidence 444555555 4556776666677777 66 7999999999865
No 65
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=64.47 E-value=23 Score=33.79 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=31.9
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|+|..|.+||--- ...|| .-..++|++-.--..+||++.-+++-.
T Consensus 258 Wi~V~p~pg~lvVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 258 WVTAKCVPDSIVVHIGDTLEILSNG-RYKSILHRGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred EEEcCCCCCeEEEEccHHHHHHhCC-ccccccceeecCCCCCeEEEEEEecCC
Confidence 6899999998887321 11222 235789997433345799999888654
No 66
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=64.18 E-value=7.6 Score=34.27 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCeeEecCcccEEEeeecCCCCCCCCCccccCCcc--cccceEEEEEE
Q 022406 196 KGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPV--IEGEKWSATKW 241 (297)
Q Consensus 196 ~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV--~~G~K~i~~~W 241 (297)
..+.+.-++|++|||.| .+.+|+..+. ..|.|+..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 35678899999999987 5899999998 57889998887
No 67
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.01 E-value=36 Score=31.68 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=59.1
Q ss_pred cccccccccCcccccCCCceeEEEEEeecCCC-CCccccc-CCCCCCCCCCCCCCCCCcchhhh-cCCeeEecCcccEEE
Q 022406 133 YEPHYDYFSDKVNIVRGGHRLATVLMYLSDVA-KGGETVF-PNAEQEPPRRRTPATNDDLSECA-KKGIAVKPRRGDALL 209 (297)
Q Consensus 133 y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~~~~~~~~~~~~~~~C~-~~~~~V~P~~G~all 209 (297)
=.+|.|+.... .+..-...+.+=|-|.. +-|.|.+ |.+..... .+.+...+.-. ...+-|.-.|||||+
T Consensus 133 t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~----~~~r~d~~~y~~~~~~pv~lekGDall 204 (299)
T COG5285 133 TRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDV----IPERPDHETYLERNAVPVELEKGDALL 204 (299)
T ss_pred ccccccccccc----CCccceEEEEEeccccccccCceEEEeccccccc----CCCCCCccchhhhcceeeeecCCCEEE
Confidence 46899965432 23445677888888874 5677655 65532210 01111111111 235778889999999
Q ss_pred eeecCCCCCCCCCccccCCcccccceEEEEEEEeccCc
Q 022406 210 FFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDSF 247 (297)
Q Consensus 210 F~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~~ 247 (297)
|. +.++|+.---..+.+-.+...-....+
T Consensus 205 F~---------~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 205 FN---------GSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred Ec---------chhhhhhhcCCCCcccceEEEEEeecc
Confidence 94 589999998888866666554444444
No 68
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=60.45 E-value=96 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=33.5
Q ss_pred CeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 197 GIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 197 ~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
.+.|.|..|..||--- .+.||. -..+.|++......+||++.-+++-.
T Consensus 228 Wi~Vpp~pga~VVNiGD~l~~wTNg~-~kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 228 WVDVPPDHSSFFVLVGDTLQVMTNGR-FKSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred EEEccCCCCcEEEEhHHHHHHHhCCe-eeccceeeecCCCCCEEEEEEeecCC
Confidence 6899999999888421 122332 35789999866566899998888543
No 69
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=55.78 E-value=18 Score=32.48 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=33.3
Q ss_pred CCeeEecCcccEEEeeecCCCCCCCCCccccCCcccc---cceEEEEEEEe
Q 022406 196 KGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIE---GEKWSATKWIH 243 (297)
Q Consensus 196 ~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~---G~K~i~~~Wi~ 243 (297)
..+.++-++|++|+|.| .+++|+-.+... +.||....|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 45788999999999987 589999988764 57999999884
No 70
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=54.29 E-value=58 Score=30.62 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=59.3
Q ss_pred CccceeeecCC------CCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchh
Q 022406 119 GEDIQVLRYEH------GQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSE 192 (297)
Q Consensus 119 ~E~~qv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~ 192 (297)
++.++++||.. ++.-+.|.|+. .+|+| +.| ..||=-+++...
T Consensus 173 ~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd-~~~GLqv~~~~g----------------- 220 (322)
T COG3491 173 NSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQD-DVGGLEVRPPNG----------------- 220 (322)
T ss_pred hheEEEEecCCCcccccccccccccCCC------------eEEEE--Eec-ccCCeEEecCCC-----------------
Confidence 45689999993 23446788763 45555 334 467766666532
Q ss_pred hhcCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 193 CAKKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 193 C~~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
..+.|.|..|..||..- ...+| .=..+.|.++--..=+||++--++..+
T Consensus 221 ---~Wl~v~P~pgtlvVNiGdmLe~~Tng-~lrST~HRV~~~~~~~R~SipfF~~p~ 273 (322)
T COG3491 221 ---GWLDVPPIPGTLVVNIGDMLERWTNG-RLRSTVHRVRNPPGVDRYSIPFFLEPN 273 (322)
T ss_pred ---CeeECCCCCCeEEEeHHHHHHHHhCC-eeccccceeecCCCccceeeeeeccCC
Confidence 27999999999999652 12233 234789999866543888887666433
No 71
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=44.93 E-value=79 Score=29.76 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=53.0
Q ss_pred cceeeecCCCC-------ccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhh
Q 022406 121 DIQVLRYEHGQ-------KYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSEC 193 (297)
Q Consensus 121 ~~qv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C 193 (297)
.+++++|.+-. ...+|.|. -.+|+|+ .| ..||=-++.+.....
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~------------g~lTlL~--qd-~v~GLQV~~~~~~~~--------------- 232 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDF------------GMMTLLA--TD-GVMGLQICKDKNAMP--------------- 232 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCC------------CeEEEEe--eC-CCCceEEecCCCCCC---------------
Confidence 46889998631 13467765 2688884 34 245644443311000
Q ss_pred hcCCeeEecCcccEEEeee----cCCCCCCCCCccccCCcccccceEEEEEEEecc
Q 022406 194 AKKGIAVKPRRGDALLFFS----LHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVD 245 (297)
Q Consensus 194 ~~~~~~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 245 (297)
...+.|.|..|..||--- .+.|| .-..++|++.. -..+||++.-+++-.
T Consensus 233 -g~Wi~Vpp~pg~~VVNiGD~L~~wTng-~~kSt~HRVv~-~~~~R~Sia~F~~p~ 285 (332)
T PLN03002 233 -QKWEYVPPIKGAFIVNLGDMLERWSNG-FFKSTLHRVLG-NGQERYSIPFFVEPN 285 (332)
T ss_pred -CcEEECCCCCCeEEEEHHHHHHHHhCC-eeECcCCeecC-CCCCeeEEEEEecCC
Confidence 126889999999887421 11222 22468899853 345788888777543
No 72
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=44.30 E-value=10 Score=23.43 Aligned_cols=8 Identities=38% Similarity=1.086 Sum_probs=4.7
Q ss_pred chhhhhcC
Q 022406 288 GFCRRSCK 295 (297)
Q Consensus 288 ~~C~~sC~ 295 (297)
..|+|||.
T Consensus 18 eqcqkscs 25 (40)
T PF11403_consen 18 EQCQKSCS 25 (40)
T ss_dssp TTSTTS-S
T ss_pred HHHhhcCC
Confidence 56777774
No 73
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=36.03 E-value=26 Score=32.01 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=24.9
Q ss_pred ccccccccCcccccCCCceeEEEEEeecCCCCCcccccCC
Q 022406 134 EPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPN 173 (297)
Q Consensus 134 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 173 (297)
.||.|..+... .-.+++|.-+.-+.+||+|.|-+
T Consensus 95 ~wHtD~sy~~~------pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIET------PPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeC------CCceeEEEEEecCCCCCccHhhh
Confidence 49999977532 23467777777778999999955
No 74
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.30 E-value=98 Score=25.93 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHhhhhhhc--cCCCccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhc
Q 022406 5 RLSLNFFFLLSFSLLIRK--SFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKS 65 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~ 65 (297)
-.|+.||.++-|++.+-- ++.++. .|+-++.. +.+.+..||++|...||..-++
T Consensus 5 i~~~~~~~l~l~t~v~~~~~~~~gt~--~~s~~~~~-----~~l~~~plsdeE~nsLiyMrEE 60 (189)
T COG4902 5 ISSLTFFVLLLITAVVGISGCQEGTN--SESTDTSG-----VTLQDSPLSDEEINSLIYMREE 60 (189)
T ss_pred hhhhHHHHHHHHHHHHhhhhhccCCC--CCCccchh-----hcccCCCCChHHHhhHHHHHHH
Confidence 357889999989887643 344433 34444433 3456778999999999987654
No 75
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=26.78 E-value=40 Score=32.97 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=20.3
Q ss_pred CeeEe-cCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEeccC
Q 022406 197 GIAVK-PRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHVDS 246 (297)
Q Consensus 197 ~~~V~-P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~ 246 (297)
-+.|. -++||.|+|+. ++.|++.++..|..+..+.+|-.-|
T Consensus 318 mv~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yipa~P 359 (416)
T PF07350_consen 318 MVSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYIPACP 359 (416)
T ss_dssp -EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE--B-E
T ss_pred cccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeEecCCC
Confidence 45565 35699999974 7999999999999999998884444
No 76
>PF08562 Crisp: Crisp; InterPro: IPR013871 This entry is found on Crisp proteins which contain IPR001283 from INTERPRO and has been termed the Crisp domain. It is found in the mammalian reproductive tract and the venom of reptiles, and has been shown to regulate ryanodine receptor Ca2+ signalling []. It contains 10 conserved cysteines which are all involved in disulphide bonds and is structurally related to the ion channel inhibitor toxins BgK and ShK []. ; PDB: 3MZ8_B 1XX5_B 2GIZ_A 1XTA_A 1RC9_A 2A05_A 2CQ7_A 2DDA_C 2EPF_A 2DDB_C ....
Probab=25.73 E-value=25 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=24.1
Q ss_pred cCccccHhHhhcCccccCcccccccccCcchhhhhcC
Q 022406 259 DNNASCERWAALGECTKNPEYMVGSAQLPGFCRRSCK 295 (297)
Q Consensus 259 d~~~~C~~wa~~geC~~n~~~m~~~~~~~~~C~~sC~ 295 (297)
|...+|....+.--|+. .+|. .+|+.||.
T Consensus 21 D~~sNC~~l~~~~~C~~--~~~k------~~C~AtC~ 49 (55)
T PF08562_consen 21 DKYSNCKSLKKQWGCQH--PYVK------SNCKATCF 49 (55)
T ss_dssp -SSTTHHHHHHHSTTTS--HHHH------HHSHHHHH
T ss_pred ccccccHHHHHhcCCCC--hHHh------cCCCCeeC
Confidence 66788999999988988 4788 99999984
No 77
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=25.37 E-value=83 Score=29.19 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHhhhhhhccCCCccccCCceeEEeccCCcEEEEcCCCCHHHHHHHHHHHhc
Q 022406 14 LSFSLLIRKSFSSTAIINPSKVKQISWKPRAFVYEGFLTDLECDHLINLAKS 65 (297)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~p~kve~ls~~P~i~~i~nfLs~~Ec~~li~~a~~ 65 (297)
||.-+||..+-.+|.. -++-|. +.+|||+.|.+.|.+.++.
T Consensus 25 LAleaLl~~G~eAy~~--~L~~E~---------~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 25 LALEALLSGGPEAYYE--FLKEEG---------ERDFLSSEEIQYILENAED 65 (284)
T ss_pred HHHHHHHhcCHHHHHH--HHHhcC---------CCCCCCHHHHHHHHHhccC
Confidence 4555566555555531 222221 4599999999999999986
No 78
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=25.00 E-value=49 Score=18.99 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=10.7
Q ss_pred ccccHhHhhcCccccC
Q 022406 261 NASCERWAALGECTKN 276 (297)
Q Consensus 261 ~~~C~~wa~~geC~~n 276 (297)
...|..|++.|.|...
T Consensus 3 ~~~C~~f~~~g~C~~G 18 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFG 18 (27)
T ss_dssp SSB-HHHHHTS--TTG
T ss_pred cccChhhccCCccCCC
Confidence 3579999999999875
No 79
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=23.32 E-value=1e+02 Score=29.42 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=32.4
Q ss_pred CCeeEecCcccEEEeeecCCCCCCCCCccccCCcccccceEEEEEEEec
Q 022406 196 KGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEGEKWSATKWIHV 244 (297)
Q Consensus 196 ~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 244 (297)
..+.++=++|++|+|.| .+.+|+...-. |.||..-.++--
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d~ 350 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLTR 350 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEcc
Confidence 35788999999999987 58999999875 888877776643
No 80
>PF08686 PLAC: PLAC (protease and lacunin) domain; InterPro: IPR010909 The PLAC (protease and lacunin) domain is a six-cysteine region of about 40 residues that is present at or near the C-terminal of various enzymes and matrix proteins, including: mammalian PACE4 (paired basic amino acid cleaving enzyme 4), mammalian PCSK5 (proprotein convertase subtilisin/kexin type 5), mammalian metalloproteinases ADAMTS-2, -3, -10, -12, -14, -16, -17, and -19, and manduca Sexta matrix protein lacunin []. The PLAC domain is often associated with other domains, such as the thrombospondin type I repeat (TSP1) (IPR000884 from INTERPRO), the Kunitz proteinase inhibitor domain (IPR002223 from INTERPRO), the Ig-like domain (IPR007110 from INTERPRO), the WAP domain (IPR008197 from INTERPRO), the subtilase domain (IPR000209 from INTERPRO), or the ADAM-type metalloprotease domain (IPR001590 from INTERPRO).; GO: 0008233 peptidase activity
Probab=23.32 E-value=45 Score=20.61 Aligned_cols=32 Identities=31% Similarity=0.751 Sum_probs=26.0
Q ss_pred ccccCcc-ccHhHhhcCccccCcccccccccCcchhhhhcC
Q 022406 256 DCTDNNA-SCERWAALGECTKNPEYMVGSAQLPGFCRRSCK 295 (297)
Q Consensus 256 ~C~d~~~-~C~~wa~~geC~~n~~~m~~~~~~~~~C~~sC~ 295 (297)
+|.|... .|..=.+.+-|... |-. ..|-+||.
T Consensus 1 ~C~D~~~~~C~lV~q~~lC~~~--~Y~------~~CC~SC~ 33 (34)
T PF08686_consen 1 ECKDKPRFNCSLVVQARLCSYK--YYR------QFCCRSCS 33 (34)
T ss_pred CCCCCCCccchhhhhcCCCCcH--HHH------HHHHHhhC
Confidence 5899998 99999999999653 444 78999985
No 81
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=23.15 E-value=67 Score=31.33 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=46.4
Q ss_pred CceeEEEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCc
Q 022406 150 GHRLATVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCP 229 (297)
Q Consensus 150 ~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~P 229 (297)
..|-.|+.+||.+..+||+..|-.......+. ..+.| .-+...=..|-+++..+ .+.|...+
T Consensus 280 ~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~----~~~~~-----EiFdn~h~p~qa~LHrg---------~~~~~a~~ 341 (415)
T KOG1971|consen 280 DAREVGLFVCLSNQFEGGELLFTGKYCTKHLR----TDDLW-----EIFDNSHDPGQAYLHRG---------YHKHGARA 341 (415)
T ss_pred chhhcceeEEecccccCCeeEeeccccccccC----CCchh-----hhccCcCCCccceecCc---------chhccccc
Confidence 46889999999999999999997653221110 00000 01122223356666554 45566666
Q ss_pred ccccceEEEEEEEecc
Q 022406 230 VIEGEKWSATKWIHVD 245 (297)
Q Consensus 230 V~~G~K~i~~~Wi~~~ 245 (297)
.+.|..+.-..|+...
T Consensus 342 ~~~~~~~~nv~~~~~~ 357 (415)
T KOG1971|consen 342 TIVGQPCPNVYWFPIS 357 (415)
T ss_pred cCCCCCCCceeeehhH
Confidence 6667766777777443
No 82
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=22.43 E-value=97 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCccccccccccCcccccCCCceeEEEEEeecCCCCCcccccCC
Q 022406 130 GQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVFPN 173 (297)
Q Consensus 130 G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 173 (297)
.....+|+|..... ..--+++|.-|....+||+|.|-+
T Consensus 93 ~~~l~~HtD~~y~~------~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 93 NTLLPLHTDLAYHE------YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred cCCcCccccCCCCC------CCCceEEEEEeccCCCCCcceeee
Confidence 35566899987642 122466777788888999999976
No 83
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=22.00 E-value=1.2e+02 Score=23.18 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=32.0
Q ss_pred EEEEeecCCCCCcccccCCCCCCCCCCCCCCCCCcchhhhcCCeeEecCcccEEEeeecCCCCCCCCCccccCCccccc
Q 022406 155 TVLMYLSDVAKGGETVFPNAEQEPPRRRTPATNDDLSECAKKGIAVKPRRGDALLFFSLHTNAIPDPVSLHSGCPVIEG 233 (297)
Q Consensus 155 T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~~~~C~~~~~~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 233 (297)
+.+.-++|..+|+...|.... .+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~---------------------~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTSP---------------------VIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCCC---------------------eEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 345567777777766664310 3455555777777755 789999998654
No 84
>PLN03207 stomagen; Provisional
Probab=21.73 E-value=68 Score=24.89 Aligned_cols=17 Identities=47% Similarity=0.717 Sum_probs=11.7
Q ss_pred CchhhhHHHHHHHHhhh
Q 022406 2 SPTRLSLNFFFLLSFSL 18 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (297)
.-|.+++++||||.+-+
T Consensus 7 ~~tt~~~~lffLl~~ll 23 (113)
T PLN03207 7 TATTRCLTLFFLLFFLL 23 (113)
T ss_pred cccchhHHHHHHHHHHH
Confidence 44566788888877654
No 85
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=20.63 E-value=95 Score=29.55 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred cCCCCccccccccccCcccccCCCceeEEEEEeecCCCCCccccc
Q 022406 127 YEHGQKYEPHYDYFSDKVNIVRGGHRLATVLMYLSDVAKGGETVF 171 (297)
Q Consensus 127 Y~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~F 171 (297)
|.. ....+|+|.... ...-.+++|.-+.-..+||+|.|
T Consensus 182 yt~-~~l~~HtD~~y~------~~pP~~~~L~c~~~~~~GG~T~~ 219 (366)
T TIGR02409 182 YTN-GGLPFHTDNPYR------DHPPGLQLLHCLESTVEGGDSLF 219 (366)
T ss_pred ccc-ccccccccCCcc------CCCCceeeeeecccCCCCcceee
No 86
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=20.29 E-value=43 Score=24.98 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=13.5
Q ss_pred EEcCCCCHHHHHHHHH
Q 022406 46 VYEGFLTDLECDHLIN 61 (297)
Q Consensus 46 ~i~nfLs~~Ec~~li~ 61 (297)
+-++|||.+||+.|..
T Consensus 24 l~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 24 LTRGFFSSYDCDEIRL 39 (81)
T ss_pred HHcCCccHhhcchhhc
Confidence 4578999999999886
Done!