BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022407
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/275 (40%), Positives = 150/275 (54%), Gaps = 11/275 (4%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L S
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSIS 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT LA+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP PLMKLVEV++ TS +T + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHE-- 267
Query: 254 GDSK---YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
DS+ + P P + + V + GKK G G + Y+
Sbjct: 268 MDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNT+S+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIV++ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLV+VI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 150/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIV+R
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 149/273 (54%), Gaps = 7/273 (2%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTS 77
IAQ+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89
Query: 78 NLKD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATS 133
D +HS D++VEAIVE+ VK +LF LDK I ASNT S+ IT +A+AT+
Sbjct: 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATT 149
Query: 134 RPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193
R + G+HF NP P+MKLVEVI+ TS +TF + ++ GK V +D GFIVNR
Sbjct: 150 RQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNR 209
Query: 194 ILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGL 253
+L+P + EA G A+KEDID MKLG PMGP +L D++GLD I+ H
Sbjct: 210 LLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMD 269
Query: 254 GDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
++ + P P L + V + GKK G G + Y+
Sbjct: 270 AENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 302
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/273 (37%), Positives = 153/273 (56%), Gaps = 1/273 (0%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
IA++ G V L D +AL RA I + + V++G+L+ +RL +++
Sbjct: 20 IAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI 79
Query: 80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
L +AD+++EA E +VKK LF++L ++ +L +NTSSISIT +A+ P +V
Sbjct: 80 HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVA 139
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
G+HF NP P+MKLVEV+ G T+ E L +GK V GFIVNR+ P
Sbjct: 140 GLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYY 199
Query: 200 NEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIM-KVLHTGLGDSKY 258
+EA+ L VA E IDA ++ G PMGPL+L D IG DV ++ V + + ++
Sbjct: 200 SEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRF 259
Query: 259 APCPLLVQYVDAGRLGKKRGIGVFDYRRVPESV 291
P + + V GRLGKK G+GV+D+R E+V
Sbjct: 260 LPSLVQQELVIGGRLGKKSGLGVYDWRAEREAV 292
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 11/182 (6%)
Query: 90 EAIVESEDVKK-----KLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFM 144
EA+V E V K+ + D +T+ +L T + LA +RP VI
Sbjct: 290 EAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM-- 347
Query: 145 NPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFF 204
K+V + A D R ++ GKTV+ DY G ++ R + +INEA
Sbjct: 348 ----AGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALD 403
Query: 205 TLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLL 264
L GVA+++DID M+LG N P GPL +G L +++ L G+ +Y PC LL
Sbjct: 404 ALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLL 463
Query: 265 VQ 266
Q
Sbjct: 464 RQ 465
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 7/271 (2%)
Query: 22 QLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTSNL 79
Q+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 54 QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS 113
Query: 80 KD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP 135
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+R
Sbjct: 114 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQ 173
Query: 136 CQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195
+ G+HF NP P+ KLVEVI+ TS +TF + ++ GK V +D GFIVNR+L
Sbjct: 174 DRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLL 233
Query: 196 MPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255
+P + EA G A+KEDID KLG P GP +L D++GLD I+ H +
Sbjct: 234 VPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAE 293
Query: 256 SK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
+ + P P L + V + GKK G G + Y+
Sbjct: 294 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 324
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/271 (38%), Positives = 145/271 (53%), Gaps = 7/271 (2%)
Query: 22 QLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTD--APRRLRCTSNL 79
Q+ G V LVD D L ++ K I S++K K D + L +
Sbjct: 21 QVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATS 80
Query: 80 KD----LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRP 135
D +HS D++VEAIVE+ VK +LF LDK I ASNTSS+ IT +A+AT+R
Sbjct: 81 TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQ 140
Query: 136 CQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195
+ G+HF NP P+ KLVEVI+ TS +TF + ++ GK V +D GFIVNR+L
Sbjct: 141 DRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLL 200
Query: 196 MPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255
+P + EA G A+KEDID KLG P GP +L D++GLD I+ H +
Sbjct: 201 VPYLXEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAE 260
Query: 256 SK-YAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
+ + P P L + V + GKK G G + Y+
Sbjct: 261 NPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 291
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28 GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
G+ V V++DP L A K I+ +++K S+ Q A +LR +S+ K+L + D+
Sbjct: 324 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 381
Query: 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
+VEA+ E ++KKK+F+EL + K A L +NTS++++ +AS+T RP VIG HF +P
Sbjct: 382 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 441
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
+M+L+EVI +S T +L+++ GK V + GF+ NR+L P N+ FF L
Sbjct: 442 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 501
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
G + ED+D + + G MGP +++D GLDV I K L G G
Sbjct: 502 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 558
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
+S+Y+ PL +AGR G+K G G + Y
Sbjct: 559 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 586
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
I+ R L +INEAF L G+A + E ID G P GP+ A +GL L
Sbjct: 623 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 682
Query: 246 MK 247
++
Sbjct: 683 LQ 684
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 152/270 (56%), Gaps = 20/270 (7%)
Query: 28 GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
G+ V V++DP L A K I+ +++K S+ Q A +LR +S+ K+L + D+
Sbjct: 60 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 117
Query: 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
+VEA+ E ++KKK+F+EL + K A L +NTS++++ +AS+T RP VIG HF +P
Sbjct: 118 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 177
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
+M+L+EVI +S T +L+++ GK V + GF+ NR+L P N+ FF L
Sbjct: 178 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 237
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
G + ED+D + + G MGP +++D GLDV I K L G G
Sbjct: 238 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 294
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
+S+Y+P ++ +AGR G+K G G + Y
Sbjct: 295 NSRYSPLGDML--CEAGRFGQKTGKGWYQY 322
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
I+ R L +INEAF L G+A + E ID G P GP+ A +GL L
Sbjct: 359 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 418
Query: 246 MK 247
++
Sbjct: 419 LQ 420
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28 GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
G+ V V++DP L A K I+ +++K S+ Q A +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
+VEA+ E ++KKK+F+EL + K A L +NTS++++ +AS+T RP VIG HF +P
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
+M+L+EVI +S T +L+++ GK V + GF+ NR+L P N+ FF L
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
G + ED+D + + G MGP +++D GLDV I K L G G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
+S+Y+ PL +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
I+ R L +INEAF L G+A + E ID G P GP+ A +GL L
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 246 MK 247
++
Sbjct: 698 LQ 699
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 28 GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADI 87
G+ V V++DP L A K I+ +++K S+ Q A +LR +S+ K+L + D+
Sbjct: 339 GISVVAVESDPKQLDAAKKIITFTLEKEASRAH--QNGQASAKPKLRFSSSTKELSTVDL 396
Query: 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP 147
+VEA+ E ++KKK+F+EL + K A L +NTS++++ +AS+T RP VIG HF +P
Sbjct: 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPA 456
Query: 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLY 207
+M+L+EVI +S T +L+++ GK V + GF+ NR+L P N+ FF L
Sbjct: 457 HVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLE 516
Query: 208 TGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMK-------VLHTGL-----G 254
G + ED+D + + G MGP +++D GLDV I K L G G
Sbjct: 517 EG-SKPEDVDGVLEEFGFK--MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRG 573
Query: 255 DSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
+S+Y+ PL +AGR G+K G G + Y
Sbjct: 574 NSRYS--PLGDMLCEAGRFGQKTGKGWYQY 601
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 190 IVNRILMPMINEAFFTLYTGVATK-EDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSI 245
I+ R L +INEAF L G+A + E ID G P GP+ A +GL L
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 246 MK 247
++
Sbjct: 698 LQ 699
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 5/232 (2%)
Query: 56 VSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAI 115
V KG+++ A + +R T + D + D++VEA+VE+ VK+ + +E++ + AI
Sbjct: 365 VDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAI 424
Query: 116 LASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175
LASNTS+ISI+ LA A RP +GMHF NP +M LVEVIRG +SD T A A++
Sbjct: 425 LASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK 484
Query: 176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLA 234
GK + D GF+VNR+L P F L + ID M K G PMGP L
Sbjct: 485 MGKNPIVVNDCPGFLVNRVLFPYFG-GFAKLVSAGVDFVRIDKVMEKFG--WPMGPAYLM 541
Query: 235 DFIGLDVCLSIMKVLHTGLGDS-KYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285
D +G+D V+ G D K + +A RLG+K G G + Y
Sbjct: 542 DVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYE 593
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 10/281 (3%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79
IA ++ V L + + L + +++Q V KG +SQ L+ + +
Sbjct: 327 IATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY 386
Query: 80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVI 139
+ D+++EA++E+ +K+++F++L+K ILASNTS+I + ++ T +++
Sbjct: 387 ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIV 446
Query: 140 GMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMI 199
G HF +P +M L+E++R TS + + ++ KT V + GF VNR+ P
Sbjct: 447 GAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYT 506
Query: 200 NEAFFTLYTGVATKEDIDAGM-KLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
A F + G A ID + K G PMGP +L D +G V ++ + Y
Sbjct: 507 QAAMFLVECG-ADPYLIDRAISKFG--MPMGPFRLCDLVGFGVAIATATQFIENFSERTY 563
Query: 259 AP--CPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPNARL 297
PL+ + AG +K G ++D +R KP+ L
Sbjct: 564 KSMIIPLMQEDKRAGEATRK-GFYLYDDKR---KAKPDPEL 600
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 29/244 (11%)
Query: 73 LRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
L+ TS+ L + D+IVE+++E +KK+LF+ L+ I K++ I +NTSS+ + ++S
Sbjct: 119 LKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVL 178
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVN 192
P ++G+HF NP +++LVE+I G+ TS + E K V + F+ N
Sbjct: 179 RDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFN 238
Query: 193 RILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP--MGPLQLADFIGLDVCLSIMKVLH 250
R+L +++ +Y ID K+ TN MGP+ +AD G DV + K
Sbjct: 239 RLLHVYFDQSQKLMYEYGYLPHQID---KIITNFGFLMGPMTVADMNGFDVMEKLKK--E 293
Query: 251 TGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY-----------------RRVPESVKP 293
GL P P+ + R G+K G + Y RRV ++ K
Sbjct: 294 NGL-----EPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKS 348
Query: 294 NARL 297
N ++
Sbjct: 349 NIQI 352
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 190 IVNRILMPMINEAFFTLYTGVATKED-IDAGMKLGTNQPM---GPLQLADFIGLD 240
++N +L P +NE + + GV + E ID LG P+ GP++ GLD
Sbjct: 358 VINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLD 412
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 8/216 (3%)
Query: 72 RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA 131
++ T+ L+ + DI+ EA+ E + K ++ E++++T A L SNTS IS+ +A
Sbjct: 61 KIEFTTTLEKVKDCDIVXEAVFEDLNTKVEVLREVERLTNAP--LCSNTSVISVDDIAER 118
Query: 132 TSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIV 191
P + +G+H+ NPP + LVE++ T +T + GK VV + + +V
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LV 176
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMK--LGTNQPM-GPLQLADFIGLDVCLSIMKV 248
NR +++EA + GV ED+D K LG + GPL D+IGLDV
Sbjct: 177 NRFNAAVLSEASRXIEEGVRA-EDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLY 235
Query: 249 LHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
L+ GD K+ P L + + G +G K G G+++Y
Sbjct: 236 LYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEY 271
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 16/273 (5%)
Query: 20 IAQLGVMDGLDVWLVDTDPDALVRATK---SISSSIQKFVS---KGQLSQAMGTDAPRRL 73
IA G V D + DAL A K +++ +K V+ G +A+G +
Sbjct: 19 IAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG-----I 73
Query: 74 RCTSNL-KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 132
R + +L + + AD+++EA+ ES D+K+ ++++L ++ A I A+N+S++ + L T
Sbjct: 74 RYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYT 133
Query: 133 SRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKT-VVCSQDYAGFIV 191
R + + +HF N + EV+ T E ++ A G + ++ AG+++
Sbjct: 134 GRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVL 193
Query: 192 NRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHT 251
N +L+P+++ A L G+A E ID ++GT P GP ++ D +GL +I V +
Sbjct: 194 NSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSV--S 251
Query: 252 GLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284
G ++A L Y+D G+LG G G + Y
Sbjct: 252 GPKQREFAAY-LKENYIDKGKLGLATGEGFYRY 283
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 6/218 (2%)
Query: 21 AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL--RCTSN 78
A L G V L D + + A ++I ++ G L ++ + L C +
Sbjct: 19 AMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNI 78
Query: 79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
+ + A I E + E ++KKK+F++LD I IL+S+TS + ++L + Q
Sbjct: 79 QEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQC 138
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
I H +NPP + LVE++ +T+ T T AL ++ G+ + ++ AGF++NR+
Sbjct: 139 IVAHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYA 198
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
+I+EA+ + G+ + D+D M G +GPL+
Sbjct: 199 IISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLE 236
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 6/218 (2%)
Query: 21 AQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL--RCTSN 78
A L G V L D +P + A ++I ++ G L ++ + L CT+
Sbjct: 22 AMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNL 81
Query: 79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQV 138
+ + I E + E+ D+K+K+F++LD I +L+S++S + ++L + + Q
Sbjct: 82 AEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQC 141
Query: 139 IGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVV-CSQDYAGFIVNRILMP 197
I H +NPP + LVE++ +TS T T AL + G++ V ++ GF++NR+
Sbjct: 142 IVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYA 201
Query: 198 MINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQ 232
+I+EA+ + G+ + D+D M G +GPL+
Sbjct: 202 IISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLE 239
>pdb|3CTV|A Chain A, Crystal Structure Of Central Domain Of 3-Hydroxyacyl-Coa
Dehydrogenase From Archaeoglobus Fulgidus
Length = 110
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 199 INEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKY 258
INEA + GVAT +DID +KLG N+P GP +LA G + ++ L G +
Sbjct: 28 INEAVKLVEXGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGKKIF 87
Query: 259 APCPLLVQ 266
P L +
Sbjct: 88 EPAKTLKE 95
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 234 ADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGV 281
+DF+ + V + +V ++APC + + +DA +G+KRG GV
Sbjct: 98 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA--VGRKRGSGV 143
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 234 ADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGV 281
+DF+ + V + +V ++APC + + +DA +G+KRG GV
Sbjct: 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA--VGRKRGSGV 152
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 234 ADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGV 281
+DF+ + V + +V ++APC + + +DA +G+KRG GV
Sbjct: 107 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA--VGRKRGSGV 152
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 234 ADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGV 281
+DF+ + V + +V ++APC + + +DA +G+KRG GV
Sbjct: 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA--VGRKRGSGV 128
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s
pdb|3BT0|B Chain B, Crystal Structure Of Transthyretin Variant V20s
Length = 127
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 251 TGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286
TG G+SK CPL+V+ +DA R + V +R+
Sbjct: 3 TGTGESK---CPLMVKVLDASRGSPAINVAVHVFRK 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,407,411
Number of Sequences: 62578
Number of extensions: 276746
Number of successful extensions: 756
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 37
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)