Query 022407
Match_columns 297
No_of_seqs 289 out of 2706
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1250 FadB 3-hydroxyacyl-CoA 100.0 1.4E-72 2.9E-77 483.8 30.7 283 4-286 2-285 (307)
2 KOG2304 3-hydroxyacyl-CoA dehy 100.0 7.6E-74 1.7E-78 456.6 19.5 282 4-285 10-298 (298)
3 PRK07819 3-hydroxybutyryl-CoA 100.0 2.3E-69 5.1E-74 469.7 33.5 284 1-284 1-286 (286)
4 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 7.7E-66 1.7E-70 476.5 34.2 288 4-291 4-292 (503)
5 TIGR02440 FadJ fatty oxidation 100.0 8.4E-65 1.8E-69 487.6 34.8 288 4-294 303-591 (699)
6 PRK08268 3-hydroxy-acyl-CoA de 100.0 2.2E-64 4.7E-69 468.3 35.0 289 2-290 4-293 (507)
7 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.1E-64 2.5E-69 487.5 33.3 282 4-288 334-617 (737)
8 TIGR02437 FadB fatty oxidation 100.0 1.4E-64 3E-69 486.1 33.3 283 4-287 312-595 (714)
9 PRK11730 fadB multifunctional 100.0 1.4E-64 3.1E-69 487.1 33.3 283 4-287 312-595 (715)
10 PRK08293 3-hydroxybutyryl-CoA 100.0 2.4E-63 5.3E-68 434.0 33.9 282 4-285 2-287 (287)
11 PRK11154 fadJ multifunctional 100.0 8.5E-64 1.8E-68 481.7 33.3 283 4-289 308-591 (708)
12 PRK09260 3-hydroxybutyryl-CoA 100.0 5.4E-63 1.2E-67 432.2 34.6 284 5-289 1-285 (288)
13 PLN02545 3-hydroxybutyryl-CoA 100.0 6.1E-63 1.3E-67 433.4 34.8 285 4-288 3-287 (295)
14 PRK05808 3-hydroxybutyryl-CoA 100.0 4.5E-63 9.7E-68 431.6 33.5 280 5-284 3-282 (282)
15 PRK07530 3-hydroxybutyryl-CoA 100.0 1.7E-62 3.6E-67 430.1 34.4 283 5-287 4-286 (292)
16 PRK06035 3-hydroxyacyl-CoA deh 100.0 1.4E-62 3.1E-67 430.1 33.2 281 4-284 2-290 (291)
17 PRK08269 3-hydroxybutyryl-CoA 100.0 3.6E-60 7.8E-65 415.9 31.7 271 16-286 1-284 (314)
18 PRK07066 3-hydroxybutyryl-CoA 100.0 3.9E-59 8.5E-64 407.7 27.3 279 4-286 6-298 (321)
19 PRK06130 3-hydroxybutyryl-CoA 100.0 4.2E-53 9.2E-58 374.0 33.3 279 4-288 3-286 (311)
20 PRK06129 3-hydroxyacyl-CoA deh 100.0 1.2E-45 2.7E-50 325.4 31.9 266 5-270 2-275 (308)
21 PRK07531 bifunctional 3-hydrox 100.0 1.2E-40 2.6E-45 310.2 29.5 246 4-253 3-254 (495)
22 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.6E-41 3.5E-46 275.4 20.2 179 7-185 1-179 (180)
23 KOG1683 Hydroxyacyl-CoA dehydr 100.0 2.8E-40 6.2E-45 282.8 11.4 265 16-287 1-265 (380)
24 KOG2305 3-hydroxyacyl-CoA dehy 100.0 5.7E-38 1.2E-42 251.2 17.4 233 5-237 3-241 (313)
25 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.2E-31 7E-36 246.6 19.9 168 109-283 337-504 (507)
26 PF00725 3HCDH: 3-hydroxyacyl- 100.0 7.9E-30 1.7E-34 186.7 9.6 97 188-284 1-97 (97)
27 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.9 3.9E-26 8.4E-31 212.0 17.2 122 151-272 378-499 (503)
28 COG2084 MmsB 3-hydroxyisobutyr 99.9 6.2E-24 1.4E-28 181.3 20.6 190 6-225 1-211 (286)
29 TIGR01505 tartro_sem_red 2-hyd 99.9 2.6E-21 5.6E-26 169.6 19.0 188 7-225 1-209 (291)
30 PRK11559 garR tartronate semia 99.9 1.4E-20 3.1E-25 165.3 21.6 189 6-225 3-212 (296)
31 KOG0409 Predicted dehydrogenas 99.9 1E-20 2.3E-25 158.8 17.8 192 5-226 35-247 (327)
32 PRK07417 arogenate dehydrogena 99.8 6.1E-18 1.3E-22 147.2 22.9 155 6-185 1-167 (279)
33 PRK15461 NADH-dependent gamma- 99.8 2E-18 4.3E-23 151.4 19.0 191 6-223 2-209 (296)
34 PRK15059 tartronate semialdehy 99.8 3.7E-18 8E-23 149.1 17.6 192 7-225 2-209 (292)
35 PF03446 NAD_binding_2: NAD bi 99.8 2.1E-19 4.6E-24 144.0 6.8 153 5-184 1-162 (163)
36 TIGR01692 HIBADH 3-hydroxyisob 99.8 1.8E-17 3.9E-22 145.0 18.2 185 10-225 1-206 (288)
37 PLN02688 pyrroline-5-carboxyla 99.8 7.7E-17 1.7E-21 139.5 21.3 152 6-185 1-159 (266)
38 PLN02350 phosphogluconate dehy 99.8 2.3E-17 5.1E-22 152.1 18.8 192 4-220 5-224 (493)
39 PRK12490 6-phosphogluconate de 99.8 1.4E-16 3E-21 140.0 19.9 186 6-222 1-211 (299)
40 PRK09599 6-phosphogluconate de 99.8 8.2E-17 1.8E-21 141.7 18.2 187 6-223 1-213 (301)
41 PLN02858 fructose-bisphosphate 99.7 7.9E-17 1.7E-21 164.7 18.6 191 5-225 4-217 (1378)
42 TIGR00872 gnd_rel 6-phosphoglu 99.7 4.7E-16 1E-20 136.5 19.6 190 6-224 1-212 (298)
43 TIGR03026 NDP-sugDHase nucleot 99.7 5.5E-16 1.2E-20 142.1 20.7 203 6-222 1-245 (411)
44 PTZ00142 6-phosphogluconate de 99.7 5.5E-16 1.2E-20 142.9 19.3 191 6-221 2-219 (470)
45 PLN02858 fructose-bisphosphate 99.7 3.4E-16 7.4E-21 160.1 19.0 193 5-225 324-537 (1378)
46 PRK11880 pyrroline-5-carboxyla 99.7 1.9E-15 4.2E-20 130.8 21.1 189 5-220 2-202 (267)
47 PRK15057 UDP-glucose 6-dehydro 99.7 1.3E-15 2.8E-20 137.8 19.4 197 6-221 1-233 (388)
48 PRK12491 pyrroline-5-carboxyla 99.7 6.5E-15 1.4E-19 127.3 22.7 152 6-182 3-160 (272)
49 PRK11064 wecC UDP-N-acetyl-D-m 99.7 5.3E-15 1.2E-19 135.3 22.9 200 5-221 3-248 (415)
50 PRK07679 pyrroline-5-carboxyla 99.7 2.2E-15 4.8E-20 131.2 19.2 191 5-222 3-208 (279)
51 PRK08507 prephenate dehydrogen 99.7 1.5E-14 3.2E-19 125.8 23.5 152 6-185 1-168 (275)
52 TIGR02441 fa_ox_alpha_mit fatt 99.7 2E-16 4.4E-21 153.5 12.7 105 166-271 624-733 (737)
53 PRK11199 tyrA bifunctional cho 99.7 1.5E-15 3.3E-20 137.1 17.4 140 4-185 97-242 (374)
54 PRK06545 prephenate dehydrogen 99.7 8.4E-15 1.8E-19 131.8 21.7 167 6-194 1-184 (359)
55 COG0677 WecC UDP-N-acetyl-D-ma 99.7 1.7E-14 3.6E-19 126.1 22.1 201 6-222 10-253 (436)
56 PRK12557 H(2)-dependent methyl 99.7 2.2E-14 4.8E-19 127.3 21.9 190 6-216 1-232 (342)
57 PRK07502 cyclohexadienyl dehyd 99.7 6E-14 1.3E-18 123.9 23.9 156 4-184 5-178 (307)
58 PRK15182 Vi polysaccharide bio 99.7 1.3E-14 2.9E-19 132.7 19.6 201 4-221 5-244 (425)
59 COG1004 Ugd Predicted UDP-gluc 99.6 2E-14 4.3E-19 126.1 19.1 200 6-221 1-242 (414)
60 TIGR00873 gnd 6-phosphoglucona 99.6 1.4E-14 3.1E-19 133.6 18.5 188 7-220 1-215 (467)
61 PRK08655 prephenate dehydrogen 99.6 6.5E-14 1.4E-18 128.8 22.8 155 6-185 1-163 (437)
62 PRK00094 gpsA NAD(P)H-dependen 99.6 1.7E-14 3.6E-19 128.5 16.9 197 6-220 2-239 (325)
63 PRK11154 fadJ multifunctional 99.6 6.1E-15 1.3E-19 143.2 11.4 86 186-272 614-703 (708)
64 PRK08229 2-dehydropantoate 2-r 99.6 9.1E-13 2E-17 118.2 23.5 166 6-188 3-180 (341)
65 TIGR02440 FadJ fatty oxidation 99.6 1E-14 2.2E-19 141.4 11.4 86 186-272 607-696 (699)
66 COG0287 TyrA Prephenate dehydr 99.6 2E-13 4.4E-18 117.6 17.7 156 5-184 3-170 (279)
67 PLN02256 arogenate dehydrogena 99.6 1.9E-13 4.2E-18 119.7 16.9 154 4-184 35-203 (304)
68 PLN02353 probable UDP-glucose 99.6 5.9E-13 1.3E-17 123.0 20.6 204 6-221 2-252 (473)
69 PRK14618 NAD(P)H-dependent gly 99.6 9.9E-14 2.1E-18 123.7 14.9 196 5-221 4-239 (328)
70 PRK06928 pyrroline-5-carboxyla 99.5 1.3E-12 2.9E-17 113.5 20.9 152 6-182 2-160 (277)
71 PRK07680 late competence prote 99.5 1.3E-12 2.8E-17 113.5 20.6 151 6-182 1-157 (273)
72 COG0345 ProC Pyrroline-5-carbo 99.5 1.6E-12 3.4E-17 110.5 20.5 151 6-183 2-158 (266)
73 PRK07634 pyrroline-5-carboxyla 99.5 7.6E-13 1.6E-17 113.2 18.4 155 1-182 1-162 (245)
74 PRK06476 pyrroline-5-carboxyla 99.5 1.4E-12 2.9E-17 112.4 19.1 180 7-220 2-193 (258)
75 PRK05479 ketol-acid reductoiso 99.5 1.9E-12 4.1E-17 113.7 18.6 184 6-216 18-224 (330)
76 PRK09287 6-phosphogluconate de 99.5 8.2E-13 1.8E-17 121.5 16.0 179 16-221 1-208 (459)
77 PRK14806 bifunctional cyclohex 99.5 9.3E-12 2E-16 122.5 24.0 158 4-185 2-177 (735)
78 PRK14619 NAD(P)H-dependent gly 99.5 5.6E-13 1.2E-17 117.7 12.6 168 5-216 4-211 (308)
79 TIGR01724 hmd_rel H2-forming N 99.5 2.9E-11 6.3E-16 104.0 21.9 158 6-184 1-193 (341)
80 PTZ00431 pyrroline carboxylate 99.5 1.3E-11 2.7E-16 106.4 19.6 145 6-183 4-154 (260)
81 cd05297 GH4_alpha_glucosidase_ 99.5 2.4E-14 5.3E-19 131.2 2.6 158 6-179 1-184 (423)
82 PRK11730 fadB multifunctional 99.4 4.2E-13 9.1E-18 130.5 11.1 86 188-282 625-714 (715)
83 TIGR01915 npdG NADPH-dependent 99.4 6E-12 1.3E-16 105.7 16.5 163 6-185 1-189 (219)
84 TIGR02437 FadB fatty oxidation 99.4 5.4E-13 1.2E-17 129.5 11.1 83 188-272 625-711 (714)
85 PF10727 Rossmann-like: Rossma 99.4 5.4E-13 1.2E-17 101.2 8.6 114 5-143 10-127 (127)
86 PLN02712 arogenate dehydrogena 99.4 5.7E-12 1.2E-16 121.2 17.2 153 5-184 369-536 (667)
87 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 8.5E-13 1.8E-17 105.0 9.3 105 7-123 1-106 (157)
88 COG0240 GpsA Glycerol-3-phosph 99.4 4.2E-12 9E-17 110.0 13.8 165 6-188 2-181 (329)
89 PRK08818 prephenate dehydrogen 99.4 5.5E-12 1.2E-16 112.8 15.0 137 6-184 5-154 (370)
90 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 2.6E-12 5.6E-17 104.7 10.3 107 6-125 1-124 (185)
91 TIGR00465 ilvC ketol-acid redu 99.4 1.1E-10 2.3E-15 102.7 20.1 147 6-179 4-161 (314)
92 PRK06249 2-dehydropantoate 2-r 99.4 8.7E-10 1.9E-14 97.7 25.1 179 1-195 1-196 (313)
93 PRK12439 NAD(P)H-dependent gly 99.3 9.6E-11 2.1E-15 104.9 18.3 169 3-189 5-188 (341)
94 PTZ00082 L-lactate dehydrogena 99.3 9.4E-12 2E-16 110.0 11.4 126 5-142 6-153 (321)
95 PLN02712 arogenate dehydrogena 99.3 9.6E-11 2.1E-15 112.8 18.1 153 5-184 52-219 (667)
96 PRK14620 NAD(P)H-dependent gly 99.3 9.9E-11 2.2E-15 104.3 16.8 170 6-193 1-187 (326)
97 PRK12921 2-dehydropantoate 2-r 99.3 1.1E-10 2.4E-15 103.0 16.8 169 6-189 1-181 (305)
98 cd01339 LDH-like_MDH L-lactate 99.3 8.7E-12 1.9E-16 109.7 9.3 122 8-141 1-139 (300)
99 COG1023 Gnd Predicted 6-phosph 99.3 2.3E-10 5E-15 93.7 16.6 188 6-224 1-213 (300)
100 PRK06522 2-dehydropantoate 2-r 99.3 2.6E-10 5.5E-15 100.6 17.4 167 6-188 1-177 (304)
101 COG2085 Predicted dinucleotide 99.3 8.8E-11 1.9E-15 95.3 12.6 154 5-185 1-180 (211)
102 PTZ00117 malate dehydrogenase; 99.3 2.3E-11 5E-16 107.6 9.7 126 5-142 5-147 (319)
103 PRK06223 malate dehydrogenase; 99.3 3.8E-11 8.2E-16 106.1 10.8 125 5-141 2-143 (307)
104 PF03807 F420_oxidored: NADP o 99.2 4.4E-11 9.5E-16 87.0 8.8 89 7-121 1-95 (96)
105 PF02153 PDH: Prephenate dehyd 99.2 3.7E-10 8E-15 97.1 15.9 140 20-183 1-156 (258)
106 COG1893 ApbA Ketopantoate redu 99.2 7.5E-09 1.6E-13 91.0 23.4 167 6-186 1-177 (307)
107 TIGR03376 glycerol3P_DH glycer 99.2 7.9E-10 1.7E-14 98.3 15.9 163 7-188 1-197 (342)
108 PTZ00345 glycerol-3-phosphate 99.2 1.4E-09 2.9E-14 97.5 16.3 168 5-188 11-206 (365)
109 COG0362 Gnd 6-phosphogluconate 99.1 4.1E-09 8.8E-14 92.4 16.9 194 6-221 4-220 (473)
110 PRK05708 2-dehydropantoate 2-r 99.1 2.9E-09 6.3E-14 93.9 15.9 178 6-197 3-188 (305)
111 TIGR01763 MalateDH_bact malate 99.1 4E-10 8.7E-15 99.1 10.3 123 6-141 2-142 (305)
112 COG4007 Predicted dehydrogenas 99.1 2.1E-08 4.6E-13 83.0 19.2 158 6-184 2-194 (340)
113 PRK12480 D-lactate dehydrogena 99.0 6.9E-09 1.5E-13 92.2 14.1 112 6-145 147-262 (330)
114 cd00650 LDH_MDH_like NAD-depen 99.0 2.9E-09 6.3E-14 92.0 9.9 96 8-117 1-116 (263)
115 KOG1683 Hydroxyacyl-CoA dehydr 99.0 4.5E-10 9.7E-15 97.6 4.1 77 189-271 295-375 (380)
116 PRK13403 ketol-acid reductoiso 98.9 8E-08 1.7E-12 83.6 16.5 145 6-180 17-174 (335)
117 TIGR00112 proC pyrroline-5-car 98.9 2.5E-07 5.5E-12 79.0 18.5 130 29-183 10-141 (245)
118 PRK06444 prephenate dehydrogen 98.9 5.8E-08 1.3E-12 79.6 13.2 115 6-184 1-120 (197)
119 PF00056 Ldh_1_N: lactate/mala 98.9 4.5E-08 9.7E-13 76.2 11.6 106 6-125 1-123 (141)
120 PF07991 IlvN: Acetohydroxy ac 98.8 2.5E-08 5.3E-13 77.9 9.5 88 6-119 5-94 (165)
121 PF02558 ApbA: Ketopantoate re 98.8 2.1E-08 4.5E-13 79.1 9.3 114 8-135 1-117 (151)
122 PRK13243 glyoxylate reductase; 98.8 8.5E-08 1.8E-12 85.5 13.9 103 6-134 151-256 (333)
123 PRK07574 formate dehydrogenase 98.8 1.4E-07 3E-12 85.2 14.1 115 6-145 193-312 (385)
124 PLN03139 formate dehydrogenase 98.8 2.1E-07 4.5E-12 84.0 15.1 115 6-145 200-319 (386)
125 cd05291 HicDH_like L-2-hydroxy 98.8 3.5E-08 7.5E-13 87.1 9.7 102 6-121 1-118 (306)
126 PRK06436 glycerate dehydrogena 98.8 8.6E-08 1.9E-12 84.1 11.2 110 6-145 123-237 (303)
127 PRK00066 ldh L-lactate dehydro 98.7 1E-07 2.2E-12 84.3 10.3 78 1-92 2-81 (315)
128 PRK15469 ghrA bifunctional gly 98.7 1.7E-07 3.7E-12 82.6 11.6 113 6-145 137-254 (312)
129 KOG2653 6-phosphogluconate deh 98.7 6.9E-07 1.5E-11 77.5 14.0 196 4-221 5-224 (487)
130 cd05292 LDH_2 A subgroup of L- 98.7 1E-07 2.3E-12 84.1 9.1 98 6-117 1-114 (308)
131 TIGR02354 thiF_fam2 thiamine b 98.7 3.4E-08 7.5E-13 81.4 5.4 104 6-117 22-142 (200)
132 PRK08605 D-lactate dehydrogena 98.6 3.5E-07 7.6E-12 81.5 11.9 100 6-133 147-251 (332)
133 cd05293 LDH_1 A subgroup of L- 98.6 3E-07 6.5E-12 81.1 10.8 99 5-116 3-117 (312)
134 KOG2380 Prephenate dehydrogena 98.6 1.2E-06 2.6E-11 75.7 13.8 151 6-183 53-218 (480)
135 PRK15076 alpha-galactosidase; 98.6 5E-07 1.1E-11 83.1 12.1 76 6-93 2-84 (431)
136 cd01065 NAD_bind_Shikimate_DH 98.6 9.3E-08 2E-12 75.7 6.2 74 5-97 19-94 (155)
137 cd00300 LDH_like L-lactate deh 98.6 2.7E-07 5.8E-12 81.2 9.3 99 8-120 1-115 (300)
138 PLN02602 lactate dehydrogenase 98.6 3E-07 6.5E-12 82.1 9.7 98 6-116 38-151 (350)
139 TIGR01327 PGDH D-3-phosphoglyc 98.6 1.1E-06 2.4E-11 83.1 13.7 114 6-144 139-256 (525)
140 PRK13581 D-3-phosphoglycerate 98.5 1.7E-06 3.6E-11 81.9 13.8 113 6-144 141-257 (526)
141 PF02826 2-Hacid_dh_C: D-isome 98.5 2.4E-07 5.3E-12 75.2 7.0 115 6-145 37-155 (178)
142 COG0111 SerA Phosphoglycerate 98.5 2.4E-06 5.1E-11 75.6 12.1 113 6-145 143-261 (324)
143 cd05294 LDH-like_MDH_nadp A la 98.5 8.6E-07 1.9E-11 78.3 9.2 107 6-125 1-126 (309)
144 TIGR00745 apbA_panE 2-dehydrop 98.5 6.2E-06 1.3E-10 72.3 14.6 166 15-195 1-177 (293)
145 PLN02928 oxidoreductase family 98.4 3.6E-06 7.8E-11 75.4 12.9 127 6-145 160-290 (347)
146 PRK05442 malate dehydrogenase; 98.4 1.6E-06 3.4E-11 76.9 9.3 111 1-125 1-135 (326)
147 TIGR02853 spore_dpaA dipicolin 98.4 1.5E-06 3.3E-11 75.7 9.1 89 6-121 152-241 (287)
148 PRK08410 2-hydroxyacid dehydro 98.4 4.2E-06 9.1E-11 73.9 11.5 109 6-145 146-259 (311)
149 cd05290 LDH_3 A subgroup of L- 98.4 1.6E-06 3.5E-11 76.3 8.8 74 7-92 1-76 (307)
150 PF00670 AdoHcyase_NAD: S-aden 98.3 2.9E-06 6.3E-11 66.7 8.5 87 6-121 24-111 (162)
151 PRK00257 erythronate-4-phospha 98.3 3.7E-06 8E-11 75.9 10.2 110 6-144 117-234 (381)
152 COG0039 Mdh Malate/lactate deh 98.3 2E-06 4.4E-11 75.0 8.2 107 6-125 1-123 (313)
153 PRK11790 D-3-phosphoglycerate 98.3 9.2E-06 2E-10 74.4 12.9 108 6-142 152-264 (409)
154 KOG3124 Pyrroline-5-carboxylat 98.3 8.4E-06 1.8E-10 68.1 10.7 151 6-180 1-156 (267)
155 TIGR01759 MalateDH-SF1 malate 98.3 4.3E-06 9.2E-11 74.1 9.6 107 5-125 3-134 (323)
156 cd01075 NAD_bind_Leu_Phe_Val_D 98.3 2.5E-05 5.3E-10 64.6 13.5 39 6-44 29-67 (200)
157 cd01338 MDH_choloroplast_like 98.3 2.3E-06 5E-11 75.8 7.1 107 5-125 2-133 (322)
158 PRK06141 ornithine cyclodeamin 98.3 4.6E-06 1E-10 73.9 8.8 93 5-121 125-220 (314)
159 PRK14194 bifunctional 5,10-met 98.3 2.4E-06 5.3E-11 74.1 6.8 69 6-119 160-230 (301)
160 PLN00112 malate dehydrogenase 98.3 1.1E-05 2.3E-10 74.1 11.3 106 6-125 101-231 (444)
161 PRK08306 dipicolinate synthase 98.2 1.3E-05 2.7E-10 70.4 11.0 89 6-121 153-242 (296)
162 PRK06932 glycerate dehydrogena 98.2 1.9E-05 4.1E-10 69.9 11.8 109 6-145 148-261 (314)
163 PRK13302 putative L-aspartate 98.2 6.1E-06 1.3E-10 71.4 8.4 71 5-97 6-80 (271)
164 PRK13304 L-aspartate dehydroge 98.2 8.1E-06 1.8E-10 70.5 9.1 68 6-96 2-73 (265)
165 PRK15438 erythronate-4-phospha 98.2 1.6E-06 3.4E-11 78.1 4.8 110 6-145 117-235 (378)
166 PF01488 Shikimate_DH: Shikima 98.2 5.7E-06 1.2E-10 63.9 7.3 74 5-96 12-87 (135)
167 KOG2666 UDP-glucose/GDP-mannos 98.2 9.6E-05 2.1E-09 63.5 15.0 203 5-220 1-251 (481)
168 KOG2711 Glycerol-3-phosphate d 98.2 4.2E-05 9.1E-10 66.4 12.7 170 4-188 20-219 (372)
169 TIGR01757 Malate-DH_plant mala 98.2 2.3E-05 4.9E-10 70.8 11.7 107 5-125 44-175 (387)
170 COG0059 IlvC Ketol-acid reduct 98.2 0.00012 2.6E-09 62.8 15.1 180 6-214 19-223 (338)
171 cd01337 MDH_glyoxysomal_mitoch 98.2 1.2E-05 2.5E-10 70.8 9.5 99 6-123 1-120 (310)
172 PRK05225 ketol-acid reductoiso 98.2 9.4E-06 2E-10 73.7 8.7 146 6-179 37-200 (487)
173 PRK15409 bifunctional glyoxyla 98.1 4.1E-05 8.9E-10 68.0 12.1 112 6-144 146-263 (323)
174 PRK06487 glycerate dehydrogena 98.1 3.4E-05 7.4E-10 68.4 11.5 108 6-145 149-261 (317)
175 cd00401 AdoHcyase S-adenosyl-L 98.1 2.7E-05 6E-10 70.9 11.1 84 6-117 203-286 (413)
176 PF01113 DapB_N: Dihydrodipico 98.1 1.3E-05 2.9E-10 60.9 7.7 101 6-127 1-105 (124)
177 COG1052 LdhA Lactate dehydroge 98.1 1E-05 2.2E-10 71.6 8.0 101 6-133 147-251 (324)
178 COG0569 TrkA K+ transport syst 98.1 5.9E-05 1.3E-09 63.5 11.9 93 6-120 1-101 (225)
179 cd01487 E1_ThiF_like E1_ThiF_l 98.1 2.8E-05 6E-10 62.8 9.4 32 7-38 1-33 (174)
180 cd05213 NAD_bind_Glutamyl_tRNA 98.1 1.9E-05 4.1E-10 69.9 9.0 72 5-97 178-251 (311)
181 TIGR01772 MDH_euk_gproteo mala 98.1 1.6E-05 3.4E-10 70.1 8.4 99 7-124 1-120 (312)
182 TIGR01771 L-LDH-NAD L-lactate 98.1 1.1E-05 2.4E-10 70.8 7.1 98 10-122 1-115 (299)
183 PTZ00075 Adenosylhomocysteinas 98.0 2.4E-05 5.2E-10 72.0 9.2 88 6-124 255-344 (476)
184 cd00704 MDH Malate dehydrogena 98.0 9E-06 2E-10 72.1 6.1 105 7-125 2-131 (323)
185 PLN00106 malate dehydrogenase 98.0 3.1E-05 6.7E-10 68.5 9.4 100 6-124 19-139 (323)
186 TIGR02371 ala_DH_arch alanine 98.0 2.8E-05 6E-10 69.2 9.1 93 5-121 128-223 (325)
187 TIGR00936 ahcY adenosylhomocys 98.0 3.5E-05 7.6E-10 70.0 9.6 96 6-130 196-295 (406)
188 PLN02306 hydroxypyruvate reduc 98.0 2.1E-05 4.6E-10 71.3 8.2 128 6-145 166-300 (386)
189 PRK14188 bifunctional 5,10-met 98.0 2E-05 4.4E-10 68.6 7.7 68 6-119 159-229 (296)
190 PRK04148 hypothetical protein; 98.0 6.8E-05 1.5E-09 57.2 9.5 95 6-121 18-112 (134)
191 TIGR01758 MDH_euk_cyt malate d 98.0 3.2E-05 7E-10 68.6 8.5 104 7-125 1-130 (324)
192 PRK05476 S-adenosyl-L-homocyst 98.0 4.6E-05 1E-09 69.7 9.4 85 6-120 213-299 (425)
193 KOG0069 Glyoxylate/hydroxypyru 97.9 4.9E-05 1.1E-09 66.8 8.3 104 5-133 162-268 (336)
194 PF02056 Glyco_hydro_4: Family 97.9 0.00018 4E-09 58.0 10.8 74 7-92 1-81 (183)
195 PRK08644 thiamine biosynthesis 97.9 9.3E-05 2E-09 61.7 9.4 32 6-37 29-61 (212)
196 PRK12549 shikimate 5-dehydroge 97.9 6.5E-05 1.4E-09 65.6 8.7 74 6-95 128-203 (284)
197 PRK14179 bifunctional 5,10-met 97.9 2.2E-05 4.7E-10 67.7 5.5 69 6-119 159-229 (284)
198 KOG1495 Lactate dehydrogenase 97.9 0.00012 2.5E-09 61.7 9.5 75 5-92 20-96 (332)
199 TIGR00507 aroE shikimate 5-deh 97.9 7.4E-05 1.6E-09 64.8 8.5 42 5-46 117-158 (270)
200 TIGR02992 ectoine_eutC ectoine 97.8 0.00011 2.3E-09 65.6 8.9 75 5-96 129-206 (326)
201 PRK06718 precorrin-2 dehydroge 97.8 0.00069 1.5E-08 56.1 13.0 126 6-175 11-142 (202)
202 PRK08618 ornithine cyclodeamin 97.8 0.00012 2.6E-09 65.2 9.1 93 5-121 127-222 (325)
203 COG1748 LYS9 Saccharopine dehy 97.8 4.4E-05 9.6E-10 68.7 6.3 74 6-97 2-81 (389)
204 PLN02494 adenosylhomocysteinas 97.8 0.0001 2.2E-09 67.8 8.6 86 6-120 255-341 (477)
205 PTZ00325 malate dehydrogenase; 97.8 0.00015 3.2E-09 64.2 9.1 34 4-37 7-43 (321)
206 cd05296 GH4_P_beta_glucosidase 97.8 0.00032 7E-09 64.4 11.5 75 6-92 1-83 (419)
207 COG2910 Putative NADH-flavin r 97.8 5.4E-05 1.2E-09 60.2 5.4 38 6-43 1-39 (211)
208 cd05197 GH4_glycoside_hydrolas 97.8 0.00055 1.2E-08 63.0 12.9 75 6-92 1-82 (425)
209 TIGR01035 hemA glutamyl-tRNA r 97.8 5.3E-05 1.1E-09 69.8 6.2 70 6-96 181-252 (417)
210 PF01408 GFO_IDH_MocA: Oxidore 97.7 0.00057 1.2E-08 51.3 10.8 69 6-97 1-75 (120)
211 cd01336 MDH_cytoplasmic_cytoso 97.7 0.00016 3.5E-09 64.2 8.9 106 6-125 3-133 (325)
212 COG1712 Predicted dinucleotide 97.7 0.00017 3.6E-09 59.3 8.0 92 6-124 1-96 (255)
213 cd05298 GH4_GlvA_pagL_like Gly 97.7 0.00055 1.2E-08 63.2 12.3 75 6-92 1-82 (437)
214 PRK07340 ornithine cyclodeamin 97.7 0.00017 3.7E-09 63.6 8.7 91 5-121 125-218 (304)
215 PRK05086 malate dehydrogenase; 97.7 0.00028 6.1E-09 62.4 9.7 100 6-123 1-121 (312)
216 PRK00045 hemA glutamyl-tRNA re 97.7 8.9E-05 1.9E-09 68.5 6.6 70 6-96 183-254 (423)
217 PRK00258 aroE shikimate 5-dehy 97.7 0.00022 4.7E-09 62.2 8.6 72 6-96 124-197 (278)
218 PRK06407 ornithine cyclodeamin 97.7 0.00027 5.8E-09 62.2 9.1 76 4-96 116-194 (301)
219 smart00859 Semialdhyde_dh Semi 97.7 0.00033 7.1E-09 53.0 8.5 98 7-124 1-103 (122)
220 PRK08291 ectoine utilization p 97.7 0.00018 3.9E-09 64.2 7.9 75 5-96 132-209 (330)
221 PLN00203 glutamyl-tRNA reducta 97.6 0.00011 2.5E-09 69.0 6.3 85 5-107 266-353 (519)
222 PRK10669 putative cation:proto 97.6 0.00034 7.5E-09 67.0 9.4 96 6-119 418-515 (558)
223 PF02254 TrkA_N: TrkA-N domain 97.6 0.0017 3.7E-08 48.4 11.4 89 8-120 1-97 (116)
224 PRK06823 ornithine cyclodeamin 97.6 0.00056 1.2E-08 60.5 9.9 94 4-121 127-223 (315)
225 PRK02318 mannitol-1-phosphate 97.6 0.00032 6.9E-09 63.9 8.7 39 6-44 1-40 (381)
226 PRK03659 glutathione-regulated 97.6 0.00035 7.6E-09 67.4 9.4 99 6-122 401-501 (601)
227 PRK06046 alanine dehydrogenase 97.6 0.00037 8E-09 62.1 8.9 93 5-121 129-224 (326)
228 COG2423 Predicted ornithine cy 97.6 0.00044 9.5E-09 61.2 8.9 95 4-121 129-226 (330)
229 PRK00048 dihydrodipicolinate r 97.6 0.00029 6.3E-09 60.6 7.6 67 6-96 2-72 (257)
230 TIGR01809 Shik-DH-AROM shikima 97.6 0.00027 5.9E-09 61.6 7.5 41 6-46 126-167 (282)
231 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00013 2.8E-09 60.0 5.0 42 6-47 29-71 (194)
232 PRK09310 aroDE bifunctional 3- 97.5 0.00025 5.5E-09 66.4 7.5 70 6-96 333-402 (477)
233 TIGR01723 hmd_TIGR 5,10-methen 97.5 0.0032 6.9E-08 53.4 13.1 109 73-184 127-240 (340)
234 TIGR02356 adenyl_thiF thiazole 97.5 0.00039 8.4E-09 57.6 7.7 33 6-38 22-55 (202)
235 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00018 3.9E-09 57.5 5.5 34 6-39 45-79 (168)
236 PRK00961 H(2)-dependent methyl 97.5 0.0033 7.2E-08 53.3 12.9 109 73-184 129-242 (342)
237 TIGR01470 cysG_Nterm siroheme 97.5 0.0012 2.6E-08 54.7 10.4 128 6-176 10-143 (205)
238 PRK13301 putative L-aspartate 97.5 0.00064 1.4E-08 57.9 8.8 63 6-93 3-71 (267)
239 PF02423 OCD_Mu_crystall: Orni 97.5 0.00023 5.1E-09 63.0 6.4 93 5-121 128-225 (313)
240 COG4091 Predicted homoserine d 97.5 0.002 4.4E-08 56.4 11.7 158 5-184 17-184 (438)
241 PRK12475 thiamine/molybdopteri 97.5 0.00064 1.4E-08 60.8 9.1 33 6-38 25-58 (338)
242 COG1064 AdhP Zn-dependent alco 97.5 0.01 2.2E-07 52.6 16.3 155 6-210 168-328 (339)
243 COG0373 HemA Glutamyl-tRNA red 97.5 0.00028 6E-09 64.0 6.4 40 6-45 179-219 (414)
244 PRK09496 trkA potassium transp 97.4 0.0008 1.7E-08 62.7 9.5 39 6-44 1-39 (453)
245 PF13460 NAD_binding_10: NADH( 97.4 0.00036 7.9E-09 56.5 6.3 36 8-43 1-37 (183)
246 PF01118 Semialdhyde_dh: Semia 97.4 0.00072 1.6E-08 51.1 7.5 96 7-123 1-100 (121)
247 PRK11861 bifunctional prephena 97.4 0.0044 9.5E-08 60.8 14.6 95 88-184 1-110 (673)
248 PRK13940 glutamyl-tRNA reducta 97.4 0.00033 7.2E-09 64.2 6.3 71 6-96 182-254 (414)
249 TIGR00518 alaDH alanine dehydr 97.4 0.0004 8.6E-09 63.0 6.5 39 6-44 168-206 (370)
250 TIGR00036 dapB dihydrodipicoli 97.3 0.0018 3.8E-08 56.1 9.7 73 6-95 2-79 (266)
251 PRK07589 ornithine cyclodeamin 97.3 0.0018 3.9E-08 57.9 9.8 92 5-121 129-226 (346)
252 PRK03562 glutathione-regulated 97.3 0.0012 2.6E-08 64.0 9.3 92 6-120 401-499 (621)
253 PRK07688 thiamine/molybdopteri 97.3 0.0013 2.8E-08 58.9 8.8 33 6-38 25-58 (339)
254 PRK06199 ornithine cyclodeamin 97.3 0.00075 1.6E-08 61.3 7.3 76 4-94 154-233 (379)
255 PRK09496 trkA potassium transp 97.3 0.0022 4.8E-08 59.8 10.6 40 5-44 231-270 (453)
256 PRK13303 L-aspartate dehydroge 97.2 0.0015 3.2E-08 56.5 8.2 70 6-97 2-74 (265)
257 PF00070 Pyr_redox: Pyridine n 97.2 0.00089 1.9E-08 46.5 5.6 35 7-41 1-35 (80)
258 PRK06719 precorrin-2 dehydroge 97.2 0.0022 4.7E-08 50.8 8.2 32 6-37 14-45 (157)
259 PRK04207 glyceraldehyde-3-phos 97.2 0.0039 8.5E-08 55.9 10.5 86 6-97 2-91 (341)
260 PRK09424 pntA NAD(P) transhydr 97.2 0.0027 5.9E-08 59.6 9.8 40 5-44 165-204 (509)
261 COG0169 AroE Shikimate 5-dehyd 97.2 0.0017 3.7E-08 56.3 7.9 43 6-48 127-170 (283)
262 PF03059 NAS: Nicotianamine sy 97.1 0.0035 7.5E-08 54.1 9.4 97 6-117 122-227 (276)
263 cd01483 E1_enzyme_family Super 97.1 0.0022 4.8E-08 49.9 7.4 32 7-38 1-33 (143)
264 cd05191 NAD_bind_amino_acid_DH 97.1 0.0031 6.6E-08 44.5 7.4 32 5-36 23-55 (86)
265 TIGR01921 DAP-DH diaminopimela 97.1 0.0019 4.2E-08 56.9 7.3 66 6-97 4-73 (324)
266 PF13380 CoA_binding_2: CoA bi 97.1 0.0029 6.2E-08 47.4 7.3 81 6-117 1-86 (116)
267 PRK08300 acetaldehyde dehydrog 97.1 0.0047 1E-07 54.0 9.6 94 1-121 1-102 (302)
268 cd05311 NAD_bind_2_malic_enz N 97.1 0.0015 3.3E-08 55.0 6.3 32 6-37 26-60 (226)
269 COG5495 Uncharacterized conser 97.0 0.028 6E-07 46.6 13.0 179 6-212 11-204 (289)
270 PF03435 Saccharop_dh: Sacchar 97.0 0.00052 1.1E-08 62.7 3.3 37 8-44 1-39 (386)
271 COG1648 CysG Siroheme synthase 97.0 0.03 6.5E-07 46.5 13.4 131 6-175 13-145 (210)
272 PRK14175 bifunctional 5,10-met 97.0 0.0035 7.6E-08 54.4 8.1 70 6-119 159-229 (286)
273 PRK14106 murD UDP-N-acetylmura 97.0 0.017 3.7E-07 53.9 13.3 34 5-38 5-38 (450)
274 PLN02819 lysine-ketoglutarate 97.0 0.0057 1.2E-07 62.0 10.4 75 4-97 568-661 (1042)
275 PRK14027 quinate/shikimate deh 97.0 0.0012 2.6E-08 57.6 4.9 42 6-47 128-170 (283)
276 PRK06153 hypothetical protein; 96.9 0.0037 8E-08 56.2 7.8 32 6-37 177-209 (393)
277 PRK05597 molybdopterin biosynt 96.9 0.0016 3.5E-08 58.7 5.5 33 6-38 29-62 (355)
278 PRK05562 precorrin-2 dehydroge 96.9 0.02 4.4E-07 47.9 11.3 127 6-175 26-158 (223)
279 cd00757 ThiF_MoeB_HesA_family 96.9 0.0061 1.3E-07 51.5 8.4 33 6-38 22-55 (228)
280 TIGR00561 pntA NAD(P) transhyd 96.9 0.006 1.3E-07 57.2 8.9 39 6-44 165-203 (511)
281 PRK12409 D-amino acid dehydrog 96.8 0.0015 3.4E-08 60.0 4.8 33 6-38 2-34 (410)
282 CHL00194 ycf39 Ycf39; Provisio 96.8 0.0061 1.3E-07 54.1 8.4 36 6-41 1-37 (317)
283 PRK05600 thiamine biosynthesis 96.8 0.0073 1.6E-07 54.7 8.9 33 6-38 42-75 (370)
284 COG4074 Mth H2-forming N5,N10- 96.8 0.039 8.4E-07 45.4 12.0 106 73-181 127-237 (343)
285 PRK12749 quinate/shikimate deh 96.8 0.0067 1.5E-07 53.0 8.0 34 6-39 125-159 (288)
286 COG1063 Tdh Threonine dehydrog 96.7 0.025 5.5E-07 50.9 12.0 38 7-44 171-209 (350)
287 PRK12548 shikimate 5-dehydroge 96.7 0.0028 6.1E-08 55.5 5.6 33 6-38 127-160 (289)
288 PRK08762 molybdopterin biosynt 96.7 0.0076 1.6E-07 54.9 8.6 32 6-37 136-168 (376)
289 PRK11579 putative oxidoreducta 96.7 0.0087 1.9E-07 53.8 8.9 72 1-98 1-78 (346)
290 PLN00016 RNA-binding protein; 96.7 0.0089 1.9E-07 54.4 8.8 36 5-40 52-92 (378)
291 COG0499 SAM1 S-adenosylhomocys 96.7 0.0062 1.3E-07 53.7 7.2 90 6-124 210-299 (420)
292 COG0673 MviM Predicted dehydro 96.7 0.019 4.2E-07 51.3 10.8 95 5-125 3-104 (342)
293 PRK08163 salicylate hydroxylas 96.7 0.0024 5.1E-08 58.4 4.9 38 1-39 1-38 (396)
294 PRK07494 2-octaprenyl-6-methox 96.7 0.002 4.4E-08 58.7 4.4 39 1-39 3-41 (388)
295 cd05211 NAD_bind_Glu_Leu_Phe_V 96.7 0.01 2.2E-07 49.7 8.1 33 6-38 24-57 (217)
296 TIGR03215 ac_ald_DH_ac acetald 96.6 0.014 2.9E-07 50.9 9.0 71 6-97 2-77 (285)
297 PRK14192 bifunctional 5,10-met 96.6 0.0083 1.8E-07 52.2 7.6 33 6-38 160-193 (283)
298 PRK12550 shikimate 5-dehydroge 96.6 0.0079 1.7E-07 52.1 7.4 39 6-44 123-162 (272)
299 PRK05690 molybdopterin biosynt 96.6 0.0095 2.1E-07 50.8 7.8 34 6-39 33-67 (245)
300 KOG0023 Alcohol dehydrogenase, 96.6 0.097 2.1E-06 45.8 13.7 39 5-44 182-221 (360)
301 smart00846 Gp_dh_N Glyceraldeh 96.6 0.025 5.5E-07 44.3 9.3 37 6-42 1-40 (149)
302 PF13450 NAD_binding_8: NAD(P) 96.6 0.0033 7.2E-08 42.2 3.8 30 10-39 1-30 (68)
303 PRK07045 putative monooxygenas 96.6 0.0031 6.6E-08 57.6 4.8 40 1-40 1-40 (388)
304 PRK00436 argC N-acetyl-gamma-g 96.6 0.01 2.2E-07 53.3 8.0 98 6-125 3-104 (343)
305 cd01484 E1-2_like Ubiquitin ac 96.5 0.018 3.8E-07 48.7 8.8 33 7-39 1-34 (234)
306 PRK03369 murD UDP-N-acetylmura 96.5 0.0077 1.7E-07 56.8 7.4 35 6-40 13-47 (488)
307 PRK14189 bifunctional 5,10-met 96.5 0.0061 1.3E-07 52.8 6.1 68 6-118 159-228 (285)
308 PF13241 NAD_binding_7: Putati 96.5 0.01 2.2E-07 43.4 6.4 34 5-38 7-40 (103)
309 COG1486 CelF Alpha-galactosida 96.5 0.015 3.2E-07 53.1 8.6 76 5-92 3-85 (442)
310 PRK00711 D-amino acid dehydrog 96.5 0.0036 7.8E-08 57.6 4.9 34 6-39 1-34 (416)
311 PRK00683 murD UDP-N-acetylmura 96.5 0.0066 1.4E-07 56.1 6.4 36 6-41 4-39 (418)
312 PRK08223 hypothetical protein; 96.5 0.012 2.5E-07 51.2 7.4 36 6-41 28-64 (287)
313 PRK01438 murD UDP-N-acetylmura 96.5 0.017 3.6E-07 54.4 9.2 34 6-39 17-50 (480)
314 PLN03075 nicotianamine synthas 96.4 0.059 1.3E-06 47.0 11.7 101 5-120 124-233 (296)
315 COG0300 DltE Short-chain dehyd 96.4 0.014 3E-07 50.1 7.4 46 5-50 6-52 (265)
316 PRK05868 hypothetical protein; 96.4 0.0041 8.8E-08 56.6 4.5 34 6-39 2-35 (372)
317 cd01076 NAD_bind_1_Glu_DH NAD( 96.4 0.027 5.8E-07 47.5 9.0 31 6-36 32-63 (227)
318 KOG0022 Alcohol dehydrogenase, 96.4 0.21 4.5E-06 43.6 14.2 39 6-44 194-233 (375)
319 PRK06847 hypothetical protein; 96.4 0.005 1.1E-07 55.8 4.8 38 1-39 1-38 (375)
320 PRK07236 hypothetical protein; 96.4 0.0055 1.2E-07 55.9 5.2 35 5-39 6-40 (386)
321 PRK14874 aspartate-semialdehyd 96.3 0.015 3.2E-07 52.1 7.7 143 6-183 2-152 (334)
322 COG1062 AdhC Zn-dependent alco 96.3 0.19 4.1E-06 44.4 14.1 39 6-44 187-226 (366)
323 COG0136 Asd Aspartate-semialde 96.3 0.048 1E-06 48.1 10.5 144 6-183 2-156 (334)
324 PRK05653 fabG 3-ketoacyl-(acyl 96.3 0.014 3E-07 49.2 7.2 44 1-44 1-45 (246)
325 PLN02968 Probable N-acetyl-gam 96.3 0.01 2.2E-07 53.9 6.6 98 5-124 38-138 (381)
326 PRK06753 hypothetical protein; 96.3 0.005 1.1E-07 55.8 4.6 34 6-39 1-34 (373)
327 COG0686 Ald Alanine dehydrogen 96.3 0.0048 1E-07 53.4 4.0 90 6-117 169-265 (371)
328 PLN03209 translocon at the inn 96.3 0.025 5.4E-07 53.8 9.2 41 6-46 81-122 (576)
329 PRK02472 murD UDP-N-acetylmura 96.3 0.032 7E-07 52.0 10.0 39 1-39 1-39 (447)
330 PF01494 FAD_binding_3: FAD bi 96.3 0.0045 9.8E-08 55.2 4.2 33 7-39 3-35 (356)
331 PF00899 ThiF: ThiF family; I 96.3 0.006 1.3E-07 47.0 4.2 33 6-38 3-36 (135)
332 PRK08020 ubiF 2-octaprenyl-3-m 96.3 0.0049 1.1E-07 56.2 4.3 38 1-38 1-38 (391)
333 PRK08773 2-octaprenyl-3-methyl 96.3 0.0051 1.1E-07 56.2 4.4 34 5-38 6-39 (392)
334 PRK00141 murD UDP-N-acetylmura 96.3 0.017 3.7E-07 54.2 8.0 35 6-40 16-50 (473)
335 KOG1502 Flavonol reductase/cin 96.3 0.012 2.6E-07 51.8 6.3 38 4-41 5-43 (327)
336 PRK14191 bifunctional 5,10-met 96.2 0.016 3.6E-07 50.1 7.0 68 6-117 158-226 (285)
337 PRK14982 acyl-ACP reductase; P 96.2 0.0092 2E-07 53.2 5.5 39 6-44 156-197 (340)
338 PRK10792 bifunctional 5,10-met 96.2 0.012 2.6E-07 51.0 6.0 68 6-118 160-229 (285)
339 PF02882 THF_DHG_CYH_C: Tetrah 96.2 0.015 3.2E-07 46.1 6.0 71 6-120 37-108 (160)
340 PRK01710 murD UDP-N-acetylmura 96.2 0.057 1.2E-06 50.5 11.0 34 6-39 15-48 (458)
341 PRK07231 fabG 3-ketoacyl-(acyl 96.2 0.019 4.1E-07 48.6 7.2 44 1-44 1-45 (251)
342 TIGR01381 E1_like_apg7 E1-like 96.1 0.0021 4.5E-08 61.3 1.2 33 6-38 339-372 (664)
343 PF01266 DAO: FAD dependent ox 96.1 0.008 1.7E-07 53.6 4.9 31 7-37 1-31 (358)
344 COG2344 AT-rich DNA-binding pr 96.1 0.013 2.7E-07 47.0 5.2 76 5-107 84-167 (211)
345 PRK06126 hypothetical protein; 96.1 0.0071 1.5E-07 57.9 4.6 36 4-39 6-41 (545)
346 PRK06185 hypothetical protein; 96.1 0.0076 1.7E-07 55.3 4.6 35 5-39 6-40 (407)
347 PRK07588 hypothetical protein; 96.1 0.0073 1.6E-07 55.2 4.4 34 6-39 1-34 (391)
348 PF12847 Methyltransf_18: Meth 96.1 0.18 3.9E-06 36.9 11.2 95 6-118 3-109 (112)
349 PRK06139 short chain dehydroge 96.1 0.13 2.9E-06 45.9 12.3 41 6-46 8-49 (330)
350 PRK06475 salicylate hydroxylas 96.0 0.0071 1.5E-07 55.5 4.2 34 6-39 3-36 (400)
351 PRK06270 homoserine dehydrogen 96.0 0.013 2.9E-07 52.5 5.8 22 6-27 3-24 (341)
352 PRK07538 hypothetical protein; 96.0 0.0078 1.7E-07 55.5 4.4 34 6-39 1-34 (413)
353 TIGR03840 TMPT_Se_Te thiopurin 96.0 0.13 2.8E-06 42.9 11.3 98 6-115 36-147 (213)
354 PRK06349 homoserine dehydrogen 96.0 0.018 4E-07 53.3 6.8 66 6-95 4-83 (426)
355 COG0665 DadA Glycine/D-amino a 96.0 0.0099 2.1E-07 54.0 4.9 34 5-38 4-37 (387)
356 PRK11259 solA N-methyltryptoph 96.0 0.008 1.7E-07 54.5 4.3 32 7-38 5-36 (376)
357 PRK07326 short chain dehydroge 96.0 0.027 5.9E-07 47.3 7.2 39 6-44 7-46 (237)
358 PRK01390 murD UDP-N-acetylmura 95.9 0.022 4.8E-07 53.3 7.1 34 6-39 10-43 (460)
359 PRK14176 bifunctional 5,10-met 95.9 0.02 4.4E-07 49.6 6.2 68 6-118 165-234 (287)
360 PRK08013 oxidoreductase; Provi 95.9 0.0085 1.8E-07 55.0 4.2 34 6-39 4-37 (400)
361 cd05212 NAD_bind_m-THF_DH_Cycl 95.9 0.036 7.8E-07 42.9 6.9 68 6-118 29-98 (140)
362 COG0654 UbiH 2-polyprenyl-6-me 95.9 0.01 2.2E-07 54.3 4.5 32 6-37 3-34 (387)
363 TIGR01850 argC N-acetyl-gamma- 95.9 0.046 1E-06 49.1 8.6 98 6-124 1-103 (346)
364 PRK06728 aspartate-semialdehyd 95.9 0.16 3.5E-06 45.4 11.9 147 1-182 1-154 (347)
365 PRK12939 short chain dehydroge 95.9 0.033 7.1E-07 47.1 7.4 40 6-45 8-48 (250)
366 PRK05335 tRNA (uracil-5-)-meth 95.9 0.011 2.4E-07 54.2 4.6 33 6-38 3-35 (436)
367 PRK10637 cysG siroheme synthas 95.9 0.1 2.2E-06 48.8 11.2 129 6-176 13-146 (457)
368 TIGR02360 pbenz_hydroxyl 4-hyd 95.8 0.012 2.6E-07 53.8 4.8 34 6-39 3-36 (390)
369 PRK09414 glutamate dehydrogena 95.8 0.043 9.2E-07 50.8 8.3 30 6-35 233-263 (445)
370 PRK07411 hypothetical protein; 95.8 0.023 5E-07 51.9 6.5 34 6-39 39-73 (390)
371 TIGR01377 soxA_mon sarcosine o 95.8 0.011 2.4E-07 53.6 4.5 31 7-37 2-32 (380)
372 PRK00421 murC UDP-N-acetylmura 95.8 0.032 6.9E-07 52.3 7.6 35 5-39 7-42 (461)
373 PRK07454 short chain dehydroge 95.8 0.037 8E-07 46.7 7.4 42 3-44 4-46 (241)
374 cd05312 NAD_bind_1_malic_enz N 95.8 0.038 8.3E-07 47.7 7.3 129 6-147 26-172 (279)
375 PRK08849 2-octaprenyl-3-methyl 95.8 0.013 2.8E-07 53.5 4.6 33 6-38 4-36 (384)
376 PRK05671 aspartate-semialdehyd 95.8 0.029 6.3E-07 50.1 6.7 141 1-178 1-149 (336)
377 PRK14178 bifunctional 5,10-met 95.8 0.036 7.8E-07 47.9 7.0 69 6-118 153-222 (279)
378 COG3349 Uncharacterized conser 95.8 0.012 2.6E-07 54.5 4.3 33 6-38 1-33 (485)
379 cd01491 Ube1_repeat1 Ubiquitin 95.8 0.16 3.4E-06 44.3 11.0 33 6-38 20-53 (286)
380 PRK01747 mnmC bifunctional tRN 95.7 0.011 2.4E-07 57.9 4.4 33 6-38 261-293 (662)
381 PRK07364 2-octaprenyl-6-methox 95.7 0.011 2.5E-07 54.3 4.2 34 6-39 19-52 (415)
382 TIGR01546 GAPDH-II_archae glyc 95.7 0.069 1.5E-06 47.5 8.9 85 8-97 1-88 (333)
383 PLN00093 geranylgeranyl diphos 95.7 0.017 3.7E-07 53.9 5.3 37 3-39 37-73 (450)
384 KOG1399 Flavin-containing mono 95.7 0.012 2.6E-07 54.5 4.2 36 4-39 5-40 (448)
385 PF05368 NmrA: NmrA-like famil 95.7 0.065 1.4E-06 45.1 8.4 32 8-39 1-33 (233)
386 PF00185 OTCace: Aspartate/orn 95.7 0.049 1.1E-06 43.2 7.1 78 6-94 3-83 (158)
387 PF10100 DUF2338: Uncharacteri 95.7 0.48 1E-05 42.8 13.9 172 6-185 2-201 (429)
388 PRK13255 thiopurine S-methyltr 95.7 0.17 3.6E-06 42.4 10.7 97 6-114 39-149 (218)
389 PRK13394 3-hydroxybutyrate deh 95.7 0.043 9.3E-07 46.8 7.3 42 6-47 8-50 (262)
390 PRK07190 hypothetical protein; 95.7 0.016 3.5E-07 54.7 4.9 39 1-39 1-39 (487)
391 PRK07877 hypothetical protein; 95.7 0.0092 2E-07 58.4 3.4 33 6-39 108-142 (722)
392 TIGR03219 salicylate_mono sali 95.7 0.014 2.9E-07 53.9 4.4 34 6-39 1-35 (414)
393 PRK08340 glucose-1-dehydrogena 95.7 0.035 7.5E-07 47.5 6.7 42 6-47 1-43 (259)
394 TIGR03466 HpnA hopanoid-associ 95.7 0.021 4.5E-07 50.5 5.5 35 6-40 1-36 (328)
395 COG0190 FolD 5,10-methylene-te 95.7 0.021 4.5E-07 49.0 5.1 67 6-117 157-225 (283)
396 PRK05732 2-octaprenyl-6-methox 95.7 0.014 3.1E-07 53.2 4.5 32 6-37 4-38 (395)
397 TIGR01988 Ubi-OHases Ubiquinon 95.6 0.012 2.6E-07 53.4 3.9 32 8-39 2-33 (385)
398 PRK10157 putative oxidoreducta 95.6 0.016 3.5E-07 53.7 4.8 38 1-38 1-38 (428)
399 TIGR03364 HpnW_proposed FAD de 95.6 0.016 3.4E-07 52.4 4.6 32 7-38 2-33 (365)
400 PRK05472 redox-sensing transcr 95.6 0.014 3E-07 48.8 3.9 36 6-41 85-123 (213)
401 PRK14183 bifunctional 5,10-met 95.6 0.022 4.8E-07 49.2 5.2 68 6-118 158-227 (281)
402 PRK11728 hydroxyglutarate oxid 95.6 0.016 3.4E-07 53.1 4.6 33 6-38 3-37 (393)
403 PRK08850 2-octaprenyl-6-methox 95.6 0.015 3.3E-07 53.3 4.5 32 6-37 5-36 (405)
404 TIGR00137 gid_trmFO tRNA:m(5)U 95.6 0.015 3.2E-07 53.6 4.3 33 7-39 2-34 (433)
405 PRK09072 short chain dehydroge 95.6 0.045 9.8E-07 46.9 7.2 44 1-44 1-45 (263)
406 cd00762 NAD_bind_malic_enz NAD 95.6 0.07 1.5E-06 45.4 8.0 127 6-147 26-173 (254)
407 cd01079 NAD_bind_m-THF_DH NAD 95.6 0.029 6.2E-07 45.7 5.4 85 6-120 63-156 (197)
408 TIGR01984 UbiH 2-polyprenyl-6- 95.6 0.012 2.7E-07 53.4 3.8 32 8-39 2-34 (382)
409 PLN02358 glyceraldehyde-3-phos 95.6 0.062 1.3E-06 48.0 8.0 37 1-37 1-39 (338)
410 PRK05714 2-octaprenyl-3-methyl 95.6 0.012 2.6E-07 54.0 3.7 32 7-38 4-35 (405)
411 PRK09126 hypothetical protein; 95.6 0.015 3.3E-07 53.0 4.4 34 6-39 4-37 (392)
412 PRK07102 short chain dehydroge 95.6 0.043 9.3E-07 46.4 6.9 39 6-44 2-41 (243)
413 PRK06617 2-octaprenyl-6-methox 95.6 0.016 3.4E-07 52.7 4.4 32 6-37 2-33 (374)
414 PF00743 FMO-like: Flavin-bind 95.6 0.014 2.9E-07 55.6 4.0 34 6-39 2-35 (531)
415 PRK07666 fabG 3-ketoacyl-(acyl 95.5 0.056 1.2E-06 45.5 7.4 39 6-44 8-47 (239)
416 PRK06138 short chain dehydroge 95.5 0.18 3.8E-06 42.7 10.5 44 1-44 1-45 (252)
417 PRK07478 short chain dehydroge 95.5 0.054 1.2E-06 46.1 7.4 41 6-46 7-48 (254)
418 COG2227 UbiG 2-polyprenyl-3-me 95.5 0.052 1.1E-06 45.5 6.8 98 6-123 61-164 (243)
419 PRK13256 thiopurine S-methyltr 95.5 0.28 6E-06 41.2 11.2 105 6-117 45-160 (226)
420 PLN02383 aspartate semialdehyd 95.5 0.12 2.6E-06 46.4 9.6 95 3-124 5-104 (344)
421 PRK07890 short chain dehydroge 95.5 0.056 1.2E-06 46.0 7.4 42 4-45 4-46 (258)
422 KOG0068 D-3-phosphoglycerate d 95.5 0.046 1E-06 47.9 6.6 100 6-133 147-251 (406)
423 PRK12429 3-hydroxybutyrate deh 95.5 0.15 3.2E-06 43.3 9.9 39 6-44 5-44 (258)
424 PRK06172 short chain dehydroge 95.5 0.058 1.3E-06 45.8 7.3 39 6-44 8-47 (253)
425 COG0771 MurD UDP-N-acetylmuram 95.5 0.028 6E-07 51.9 5.5 36 5-40 7-42 (448)
426 PLN02985 squalene monooxygenas 95.5 0.023 5E-07 53.9 5.2 33 6-38 44-76 (514)
427 PF01262 AlaDh_PNT_C: Alanine 95.4 0.049 1.1E-06 43.6 6.3 39 6-44 21-59 (168)
428 COG0289 DapB Dihydrodipicolina 95.4 0.087 1.9E-06 44.8 7.9 35 5-39 2-39 (266)
429 cd05295 MDH_like Malate dehydr 95.4 0.13 2.8E-06 47.7 9.7 106 6-125 124-255 (452)
430 KOG1494 NAD-dependent malate d 95.4 0.55 1.2E-05 40.4 12.5 177 6-197 29-259 (345)
431 PRK08703 short chain dehydroge 95.4 0.063 1.4E-06 45.2 7.3 39 6-44 7-46 (239)
432 COG1179 Dinucleotide-utilizing 95.4 0.032 6.9E-07 46.7 5.2 40 6-45 31-71 (263)
433 PRK09186 flagellin modificatio 95.4 0.16 3.4E-06 43.2 9.8 40 6-45 5-45 (256)
434 PRK12826 3-ketoacyl-(acyl-carr 95.4 0.061 1.3E-06 45.5 7.2 39 6-44 7-46 (251)
435 PRK03803 murD UDP-N-acetylmura 95.4 0.17 3.6E-06 47.3 10.6 34 6-39 7-40 (448)
436 PRK08217 fabG 3-ketoacyl-(acyl 95.4 0.068 1.5E-06 45.2 7.4 40 6-45 6-46 (253)
437 PRK07774 short chain dehydroge 95.4 0.067 1.5E-06 45.3 7.4 39 6-44 7-46 (250)
438 PRK08243 4-hydroxybenzoate 3-m 95.4 0.023 5E-07 52.0 4.8 34 6-39 3-36 (392)
439 TIGR03366 HpnZ_proposed putati 95.4 1.1 2.4E-05 38.8 15.2 39 6-44 122-161 (280)
440 PLN02780 ketoreductase/ oxidor 95.4 0.054 1.2E-06 48.1 7.0 43 6-48 54-97 (320)
441 PRK07825 short chain dehydroge 95.4 0.059 1.3E-06 46.4 7.1 44 1-44 1-45 (273)
442 PLN02172 flavin-containing mon 95.3 0.021 4.5E-07 53.5 4.4 34 5-38 10-43 (461)
443 PRK07523 gluconate 5-dehydroge 95.3 0.067 1.5E-06 45.5 7.4 40 6-45 11-51 (255)
444 PLN02927 antheraxanthin epoxid 95.3 0.022 4.7E-07 55.4 4.5 34 5-38 81-114 (668)
445 TIGR01373 soxB sarcosine oxida 95.3 0.023 5E-07 52.2 4.6 31 7-37 32-64 (407)
446 TIGR03649 ergot_EASG ergot alk 95.3 0.033 7.2E-07 48.4 5.4 35 7-41 1-36 (285)
447 PRK06184 hypothetical protein; 95.3 0.023 4.9E-07 53.9 4.6 34 6-39 4-37 (502)
448 PF02629 CoA_binding: CoA bind 95.3 0.031 6.7E-07 40.2 4.3 67 5-96 3-74 (96)
449 PRK08945 putative oxoacyl-(acy 95.3 0.062 1.3E-06 45.5 6.9 39 6-44 13-52 (247)
450 PRK06124 gluconate 5-dehydroge 95.3 0.076 1.7E-06 45.2 7.5 39 6-44 12-51 (256)
451 PRK08862 short chain dehydroge 95.3 0.073 1.6E-06 44.8 7.2 46 1-46 1-47 (227)
452 PRK05565 fabG 3-ketoacyl-(acyl 95.3 0.07 1.5E-06 44.9 7.2 44 1-44 1-46 (247)
453 PRK08017 oxidoreductase; Provi 95.3 0.051 1.1E-06 46.2 6.4 39 6-44 3-42 (256)
454 PRK07063 short chain dehydroge 95.3 0.071 1.5E-06 45.5 7.3 42 6-47 8-50 (260)
455 PRK08267 short chain dehydroge 95.3 0.055 1.2E-06 46.2 6.6 39 6-44 2-41 (260)
456 PRK10206 putative oxidoreducta 95.3 0.051 1.1E-06 48.9 6.5 69 6-97 2-77 (344)
457 TIGR03325 BphB_TodD cis-2,3-di 95.3 0.058 1.3E-06 46.2 6.7 44 1-44 1-45 (262)
458 PRK11101 glpA sn-glycerol-3-ph 95.2 0.027 5.8E-07 53.9 5.0 32 6-37 7-38 (546)
459 PRK07208 hypothetical protein; 95.2 0.025 5.5E-07 53.1 4.8 37 1-38 1-37 (479)
460 PF03447 NAD_binding_3: Homose 95.2 0.065 1.4E-06 40.0 6.1 61 12-94 1-69 (117)
461 PRK07814 short chain dehydroge 95.2 0.39 8.6E-06 41.1 11.8 39 6-44 11-50 (263)
462 PLN02520 bifunctional 3-dehydr 95.2 0.045 9.8E-07 52.1 6.4 39 6-44 380-418 (529)
463 PRK02705 murD UDP-N-acetylmura 95.2 0.077 1.7E-06 49.6 7.9 33 7-39 2-34 (459)
464 PRK07832 short chain dehydroge 95.2 0.4 8.7E-06 41.2 11.9 39 6-44 1-40 (272)
465 PRK05866 short chain dehydroge 95.2 0.078 1.7E-06 46.5 7.5 41 6-46 41-82 (293)
466 PRK07067 sorbitol dehydrogenas 95.2 0.066 1.4E-06 45.6 6.9 39 6-44 7-46 (257)
467 PRK06200 2,3-dihydroxy-2,3-dih 95.2 0.3 6.4E-06 41.8 11.0 39 6-44 7-46 (263)
468 PRK05786 fabG 3-ketoacyl-(acyl 95.2 0.079 1.7E-06 44.5 7.3 44 1-44 1-45 (238)
469 PRK06180 short chain dehydroge 95.2 0.31 6.7E-06 42.1 11.2 40 5-44 4-44 (277)
470 PRK08643 acetoin reductase; Va 95.2 0.45 9.7E-06 40.4 12.0 39 6-44 3-42 (256)
471 TIGR03736 PRTRC_ThiF PRTRC sys 95.2 0.025 5.5E-07 48.0 4.1 35 4-38 10-55 (244)
472 PRK10538 malonic semialdehyde 95.2 0.06 1.3E-06 45.7 6.5 39 6-44 1-40 (248)
473 TIGR01087 murD UDP-N-acetylmur 95.2 0.15 3.3E-06 47.3 9.6 33 7-39 1-33 (433)
474 COG3380 Predicted NAD/FAD-depe 95.2 0.031 6.8E-07 47.7 4.5 34 6-39 2-35 (331)
475 PRK07109 short chain dehydroge 95.2 0.5 1.1E-05 42.2 12.6 40 6-45 9-49 (334)
476 PRK12828 short chain dehydroge 95.1 0.074 1.6E-06 44.5 6.9 38 6-43 8-46 (239)
477 TIGR01202 bchC 2-desacetyl-2-h 95.1 0.16 3.4E-06 44.8 9.2 39 6-44 146-185 (308)
478 PRK09880 L-idonate 5-dehydroge 95.1 0.25 5.4E-06 44.2 10.6 39 6-44 171-210 (343)
479 PRK08328 hypothetical protein; 95.1 0.031 6.8E-07 47.2 4.5 38 6-43 28-66 (231)
480 PRK07831 short chain dehydroge 95.1 0.07 1.5E-06 45.7 6.7 43 6-48 18-62 (262)
481 PLN03129 NADP-dependent malic 95.1 0.09 2E-06 49.8 7.8 128 6-148 322-469 (581)
482 PRK05993 short chain dehydroge 95.1 0.067 1.5E-06 46.3 6.6 39 6-44 5-44 (277)
483 PRK00517 prmA ribosomal protei 95.1 0.59 1.3E-05 39.9 12.3 90 5-117 120-210 (250)
484 TIGR02028 ChlP geranylgeranyl 95.1 0.027 5.9E-07 51.7 4.3 33 7-39 2-34 (398)
485 PRK08277 D-mannonate oxidoredu 95.1 0.085 1.9E-06 45.6 7.2 39 6-44 11-50 (278)
486 PRK14180 bifunctional 5,10-met 95.1 0.045 9.8E-07 47.4 5.3 68 6-118 159-228 (282)
487 PRK05884 short chain dehydroge 95.0 0.062 1.3E-06 45.0 6.1 38 7-44 2-40 (223)
488 cd01485 E1-1_like Ubiquitin ac 95.0 0.037 8E-07 45.6 4.6 33 6-38 20-53 (198)
489 PRK13369 glycerol-3-phosphate 95.0 0.034 7.4E-07 52.7 5.0 32 6-37 7-38 (502)
490 PRK07608 ubiquinone biosynthes 95.0 0.025 5.5E-07 51.5 3.9 34 6-39 6-39 (388)
491 cd01492 Aos1_SUMO Ubiquitin ac 95.0 0.038 8.2E-07 45.5 4.6 33 6-38 22-55 (197)
492 PRK12266 glpD glycerol-3-phosp 95.0 0.035 7.5E-07 52.7 4.9 32 6-37 7-38 (508)
493 cd08230 glucose_DH Glucose deh 95.0 0.34 7.4E-06 43.5 11.2 39 6-44 174-215 (355)
494 PLN02516 methylenetetrahydrofo 95.0 0.048 1E-06 47.6 5.3 68 6-118 168-237 (299)
495 COG4221 Short-chain alcohol de 95.0 0.084 1.8E-06 44.4 6.6 48 1-48 1-50 (246)
496 PRK07677 short chain dehydroge 95.0 0.22 4.7E-06 42.3 9.5 39 6-44 2-41 (252)
497 PLN00141 Tic62-NAD(P)-related 95.0 0.059 1.3E-06 45.9 6.0 38 5-42 17-55 (251)
498 TIGR01296 asd_B aspartate-semi 95.0 0.048 1E-06 48.9 5.5 142 7-183 1-150 (339)
499 PRK14177 bifunctional 5,10-met 95.0 0.048 1E-06 47.2 5.3 68 6-118 160-229 (284)
500 PRK06194 hypothetical protein; 95.0 0.097 2.1E-06 45.4 7.3 39 6-44 7-46 (287)
No 1
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=1.4e-72 Score=483.81 Aligned_cols=283 Identities=51% Similarity=0.799 Sum_probs=275.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||++||..++.+||+|+++|++++.++++.+.+++.++++.++|.++.++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999998999999999999999999
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|+++++++++++|++||||+++++++++.+.+|+|++|+||||||++++++||+.+..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++++.++.+++||.|++++|.|||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|+|+..
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~ 241 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML 241 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022407 244 SIMKVLHTGLG-DSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 244 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~ 286 (297)
.+++.+++.++ ++.|.|++++++|++.|++|+|+|+|||+|++
T Consensus 242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~ 285 (307)
T COG1250 242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG 285 (307)
T ss_pred HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence 99999998888 45788999999999999999999999999985
No 2
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=7.6e-74 Score=456.56 Aligned_cols=282 Identities=52% Similarity=0.846 Sum_probs=269.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-----hcccCCceEEecC
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM-----GTDAPRRLRCTSN 78 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~~ 78 (297)
.+++|+|||+|.||++||+..+.+|++|+++|++++.++++.+.|.+.+.+..+++..+... .+..+++|+.+++
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999999999999999999999998887765433 2566789999999
Q ss_pred ccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEec
Q 022407 79 LKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIR 157 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~ 157 (297)
.++ ++++|+|||++.|+.++|+.+|++|++.+++++|++||||++.+++++..+.+|.||.|+|||||++++.++||+.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir 169 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIR 169 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhc
Confidence 887 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhh
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFI 237 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~ 237 (297)
++.|+++++..+..+.+.+|++++.++|.||||+||++.++++||+++++.|.++.+|||.+|++|.||||||||++|.+
T Consensus 170 ~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dyv 249 (298)
T KOG2304|consen 170 TDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADYV 249 (298)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccC
Q 022407 238 GLDVCLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYR 285 (297)
Q Consensus 238 Gl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~ 285 (297)
|||++..+|+.|++.+ +++.|.|+|+|.++|++|++|||+|.|||+|.
T Consensus 250 GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk 298 (298)
T KOG2304|consen 250 GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK 298 (298)
T ss_pred hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence 9999999999999999 45789999999999999999999999999994
No 3
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.3e-69 Score=469.66 Aligned_cols=284 Identities=43% Similarity=0.712 Sum_probs=275.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
|.+.+++|+|||+|.||.+||.+|+.+|++|++||++++.++++.+++++.+++++++|.++.++.+..+.+++++++++
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 80 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG 80 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH
Confidence 77778899999999999999999999999999999999999999999999999999999999888888899999999998
Q ss_pred cccCCcEEEEecccCHHHHHHHHHHHHhhc-cCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCC
Q 022407 81 DLHSADIIVEAIVESEDVKKKLFSELDKIT-KASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGA 159 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~-~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~ 159 (297)
++++||+||||+||+.++|+++|+++++.+ ++++||+||||++++++++..+.+|+|++|+|||+||+.++++||+++.
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~ 160 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTL 160 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCC
Confidence 899999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHH-HhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhc
Q 022407 160 DTSDETFRATKALAE-RFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIG 238 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~-~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~G 238 (297)
.|++++++++.+++. .+|+.|++++|.|||++||++.+++||+++++++|+++++|||.+++.|+|||+|||+++|.+|
T Consensus 161 ~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G 240 (286)
T PRK07819 161 VTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240 (286)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence 999999999999988 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022407 239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y 284 (297)
++.+..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|
T Consensus 241 ld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y 286 (286)
T PRK07819 241 LDTVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY 286 (286)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence 9999999999999999888999999999999999999999999999
No 4
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=7.7e-66 Score=476.55 Aligned_cols=288 Identities=39% Similarity=0.634 Sum_probs=276.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||++||.+|+++||+|++||+++++++++.+++++.+++++++|.++.++.+..+.+++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999888888999999999998889
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+||||+||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.+++|+|||+|+++++++|++.+..|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|++++++||.+++.++|||+|||+++|.+|+|+++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~~ 243 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCC
Q 022407 244 SIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESV 291 (297)
Q Consensus 244 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~~ 291 (297)
.+++.+++.+ ++++|.|++++++|+++|++|+|+|+|||+|++++...
T Consensus 244 ~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~ 292 (503)
T TIGR02279 244 AVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAV 292 (503)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCC
Confidence 9999888764 67789999999999999999999999999998765443
No 5
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=8.4e-65 Score=487.61 Aligned_cols=288 Identities=34% Similarity=0.540 Sum_probs=275.6
Q ss_pred CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
.+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.+++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGF 382 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHh
Confidence 4679999999999999999998 589999999999999999999999999999999999988888889999999999889
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|+
T Consensus 383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~ 462 (699)
T TIGR02440 383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTS 462 (699)
T ss_pred ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHH
Q 022407 163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~ 242 (297)
+++++++..+++.+||.|++++|.|||++||++.++++|+++++++|+ +++|||.+++ ++|||+|||+++|.+|+|++
T Consensus 463 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p~GPf~l~D~vGld~~ 540 (699)
T TIGR02440 463 EQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGE-PVEHIDKALV-KFGFPVGPITLLDEVGIDVG 540 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH-HcCCCcCHHHHHHHhchHHH
Confidence 999999999999999999999999999999999999999999999996 9999999997 89999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCCCCCC
Q 022407 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPESVKPN 294 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~~~~~ 294 (297)
..+++.++..+++ +|.|++++++|+++|++|+|+|+|||+|+++++...+|
T Consensus 541 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~ 591 (699)
T TIGR02440 541 AKISPILEAELGE-RFKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVD 591 (699)
T ss_pred HHHHHHHHHhcCC-CCCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCC
Confidence 9999999999998 79999999999999999999999999998766544333
No 6
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.2e-64 Score=468.29 Aligned_cols=289 Identities=41% Similarity=0.616 Sum_probs=277.0
Q ss_pred CCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 2 EEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 2 ~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.+.+++|+|||+|.||.+||.+|+.+||+|++||++++.++++.+++++.+++++++|.++.++.+..+.+++.++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT 161 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~ 161 (297)
+++||+||||+||+.++|+.+|+++++.+++++|++||||++++++++..+.+|+|++|+|||+|+++++++|++.+..|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHH
Q 022407 162 SDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDV 241 (297)
Q Consensus 162 ~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~ 241 (297)
++++++++.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.++|||+|||+++|.+|+|+
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv 243 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCCC
Q 022407 242 CLSIMKVLHTGL-GDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPES 290 (297)
Q Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~~ 290 (297)
...+++.++... ++++|.|++++++|++.|++|+|+|+|||+|+++++.
T Consensus 244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~ 293 (507)
T PRK08268 244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQ 293 (507)
T ss_pred HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCC
Confidence 999999888764 5678999999999999999999999999999766543
No 7
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.1e-64 Score=487.54 Aligned_cols=282 Identities=33% Similarity=0.535 Sum_probs=272.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+...++|+.++++++++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 413 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFK 413 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999988899999999999998899
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~ 493 (737)
T TIGR02441 414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSK 493 (737)
T ss_pred cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++++..+++++||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|+|+|||+++|.+|+|++.
T Consensus 494 ~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p~GP~~l~D~vGld~~~ 571 (737)
T TIGR02441 494 DTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFPVGAATLADEVGVDVAE 571 (737)
T ss_pred HHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999997 9999999985 899999999999999999999
Q ss_pred HHHHHHHhhcCCCCCC--CcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407 244 SIMKVLHTGLGDSKYA--PCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~ 288 (297)
.+++.++..+++ +|. |++++++|+++|++|+|+|+|||+|++++
T Consensus 572 ~v~~~l~~~~~~-~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~ 617 (737)
T TIGR02441 572 HVAEDLGKAFGE-RFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGK 617 (737)
T ss_pred HHHHHHHHhcCc-ccccccCHHHHHHHHCCCCcccCCCeeEEcCCCC
Confidence 999999998887 673 68999999999999999999999998665
No 8
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.4e-64 Score=486.09 Aligned_cols=283 Identities=35% Similarity=0.497 Sum_probs=271.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||++||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|+.++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD 391 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999998888999999999998899
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+|||+++|+.++|+++|++|++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~ 471 (714)
T TIGR02437 392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSD 471 (714)
T ss_pred CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++++..+++++||.|++++|.|||++||++.++++||++++++| +++++||.+++.++|||+|||+++|.+|+|+++
T Consensus 472 ~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~ 550 (714)
T TIGR02437 472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGH 550 (714)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407 244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~ 287 (297)
++++.++..+++.. ..|++++++|+++|++|+|+|+|||+|+++
T Consensus 551 ~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~ 595 (714)
T TIGR02437 551 HAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEAD 595 (714)
T ss_pred HHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEecccC
Confidence 99999998887732 235789999999999999999999999643
No 9
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.4e-64 Score=487.05 Aligned_cols=283 Identities=35% Similarity=0.508 Sum_probs=272.0
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+++++++|.+++++.+..+.+|++++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFE 391 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999888888899999999998899
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+|||++||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||+.+..|++
T Consensus 392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~ 471 (715)
T PRK11730 392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSD 471 (715)
T ss_pred CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++.+..+++.+||.|++++|.|||++||++.++++|++.++++| ++++|||.+++.++|||+|||+++|.+|+|++.
T Consensus 472 ~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~ 550 (715)
T PRK11730 472 ETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAH 550 (715)
T ss_pred HHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhhCCCccCHHHHHHhhchHHHH
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCC-CCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407 244 SIMKVLHTGLGDSK-YAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~ 287 (297)
.+++.++..+++.. +.|++++++|+++|++|+|+|+|||+|+++
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~ 595 (715)
T PRK11730 551 HAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEED 595 (715)
T ss_pred HHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEecccC
Confidence 99999998888742 345789999999999999999999999743
No 10
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.4e-63 Score=433.96 Aligned_cols=282 Identities=29% Similarity=0.512 Sum_probs=266.0
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-hcccCCceEEecCccc-
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM-GTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~- 81 (297)
.+++|+|||+|.||.+||..|+.+|++|++||++++.++++.+.+++.++.+.+.+.++.++ .+....+++.++++++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 46799999999999999999999999999999999999999999999988888888777655 5566788889999876
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADT 161 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~ 161 (297)
+++||+||+|+|++.++|+.+++++.+.++++++|++|||+++++++++.+.++.|++|+||++|++.++++|++++..|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchH
Q 022407 162 SDETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240 (297)
Q Consensus 162 ~~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~ 240 (297)
++++++++.++++.+|+.|+++ +|.|||++||++.++++||++++++|+++++|||.+++.++|+|+|||+++|.+|+|
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld 241 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD 241 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence 9999999999999999999988 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCC-CcHHHHHHHHcCCCCcccCCcccccC
Q 022407 241 VCLSIMKVLHTGLGDSKYA-PCPLLVQYVDAGRLGKKRGIGVFDYR 285 (297)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~~G~~~g~Gfy~y~ 285 (297)
.+..+++.+++.++++++. |++++++|+++|++|+|+|+|||+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~ 287 (287)
T PRK08293 242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP 287 (287)
T ss_pred HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence 9999999999999987653 89999999999999999999999995
No 11
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=8.5e-64 Score=481.73 Aligned_cols=283 Identities=36% Similarity=0.550 Sum_probs=273.2
Q ss_pred CCcEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
.+++|+|||+|.||++||..++ .+|++|+++|++++.++++.+++++.+++++++|.++.++.+....+|+++++++++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 387 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGF 387 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHh
Confidence 4789999999999999999999 889999999999999999999999999999999999988888889999999999889
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||||+||+.++|+++|++|++++++++||+||||+++++++++.+.+|+|++|+|||+||+.+++|||++++.|+
T Consensus 388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts 467 (708)
T PRK11154 388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTS 467 (708)
T ss_pred ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHH
Q 022407 163 DETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVC 242 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~ 242 (297)
+++++.+..+++.+|+.|++++|.|||++||++.+++||+++++++|+ +++|||.+++ ++|||+|||+++|.+|++.+
T Consensus 468 ~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p~GPf~~~D~~Gld~~ 545 (708)
T PRK11154 468 AETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGE-PIEHIDAALV-KFGFPVGPITLLDEVGIDVG 545 (708)
T ss_pred HHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCCCCHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999996 8999999998 89999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~ 289 (297)
.++++.++..+++ +|.|++++++|+++|++|+|+|+|||+|+++++
T Consensus 546 ~~i~~~l~~~~~~-~~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~ 591 (708)
T PRK11154 546 TKIIPILEAALGE-RFSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGK 591 (708)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHCCCCcccCCceEEECCCCcc
Confidence 9999999998886 899999999999999999999999999986544
No 12
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.4e-63 Score=432.16 Aligned_cols=284 Identities=45% Similarity=0.712 Sum_probs=268.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+++...++..++.|.++..+.+....+++.++++++ ++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 46899999999999999999999999999999999999999888888887788888887777777788888888865 89
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+||+|+|++.++|+.+++++.+.+++++++++|||+++++++++.+.++.+++|+||++|++.++++|++.++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
+++++++++++.+|+++++++|.|||++||++.+++|||++++++|+++++|||.+++.|+|||+|||+++|.+|++.+.
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~ 240 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL 240 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCCC
Q 022407 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVPE 289 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~~ 289 (297)
..++.++..+++ +|.|+++|.+|+++|++|+|+|+|||+|+++++
T Consensus 241 ~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~~ 285 (288)
T PRK09260 241 NNLKYLHETLGE-KYRPAPLLEKYVKAGRLGRKTGRGVYDYTNREN 285 (288)
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCCCCccccCCEEEECCCCCC
Confidence 999999998887 899999999999999999999999999987553
No 13
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=6.1e-63 Score=433.45 Aligned_cols=285 Identities=76% Similarity=1.175 Sum_probs=272.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+++|+|||+|.||.+||..|+.+|++|++||+++++++.+.+++++.++++++.|.++.++.+....+++++++.+.++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 46799999999999999999999999999999999999999999999999999999988877777778888888887799
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+||+|++|+.++|+.+++++.+.++++++|+||||+++++++++.+.++.+++++||++||...+++|++.+..+++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCL 243 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~ 243 (297)
++++++.++++.+|+.+++++|.+||++||++.++++|+++++++|+++++|||.+++.|+|||+|||+++|.+|++.+.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~ 242 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL 242 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407 244 SIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~ 288 (297)
.+++.++..+++++|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~ 287 (295)
T PLN02545 243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK 287 (295)
T ss_pred HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence 999999999988789999999999999999999999999997744
No 14
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.5e-63 Score=431.62 Aligned_cols=280 Identities=56% Similarity=0.901 Sum_probs=269.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++||+|||+|.||.+||..++++|++|+++|+++++++++.+++++.++.+.+.|.++.++......+++++++++++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKD 82 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhcc
Confidence 56899999999999999999999999999999999999999999999999999998887766667788888888878999
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHH
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE 164 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~ 164 (297)
||+||+|+|++..+|+++++++.++++++++|+|+||+++++++++.++++.|++++||++|++..+++|++++..++++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e 162 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDA 162 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHH
Q 022407 165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244 (297)
Q Consensus 165 ~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~ 244 (297)
+++.+.++++.+|+.|++++|.|||+.||++.+++||+++++++|+++++|||.+++.|+|||+|||+++|.+|++.+..
T Consensus 163 ~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~ 242 (282)
T PRK05808 163 THEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCLA 242 (282)
T ss_pred HHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCccccc
Q 022407 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y 284 (297)
+++.+++.+++++|+|++++++|+++|++|+|+|+|||+|
T Consensus 243 ~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y 282 (282)
T PRK05808 243 IMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY 282 (282)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence 9999999999878999999999999999999999999999
No 15
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.7e-62 Score=430.09 Aligned_cols=283 Identities=55% Similarity=0.924 Sum_probs=269.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+++|+|||+|.||.+||..|+.+|++|++||++++.++.+.+++++.++.+.+.|.++.++.+....+++++++++++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLAD 83 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhcC
Confidence 67999999999999999999999999999999999999999999999888888888877766677788888888888999
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHH
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDE 164 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~ 164 (297)
||+||+|+|++.++|+.+++++.+.++++++|+|+||+++++++++.+.++.+++++||++|++.++++|++.+..|+++
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~ 163 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEA 163 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999888999999999999989999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHH
Q 022407 165 TFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLS 244 (297)
Q Consensus 165 ~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~ 244 (297)
+++++.++++.+|+.+++++|.|||++||++.++++|++.++++|++++++||.+++.|+|||+|||+++|.+|++.+..
T Consensus 164 ~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~~ 243 (292)
T PRK07530 164 TFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCLS 243 (292)
T ss_pred HHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407 245 IMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~ 287 (297)
+++.+++.+++++|+|++++++|+++|++|+|+|+|||+|+++
T Consensus 244 ~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~ 286 (292)
T PRK07530 244 IMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE 286 (292)
T ss_pred HHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence 9999999998878999999999999999999999999999655
No 16
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.4e-62 Score=430.15 Aligned_cols=281 Identities=41% Similarity=0.624 Sum_probs=265.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS---SIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
.+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+++++ .++.+.+.|.++.++.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46799999999999999999999999999999999999988887776 366677788877777777778888888876
Q ss_pred cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCC
Q 022407 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGAD 160 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~ 160 (297)
.+++||+||+|+|++.++|+++++++.+.++++++|+|+||+++++++++.+.++.|++++||++|+++++++|++.+..
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 68999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchH
Q 022407 161 TSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLD 240 (297)
Q Consensus 161 ~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~ 240 (297)
|++++++++.++++.+|+.|++++|.|||++||++.++++||++++++|+++++|||.+++.++|+|+|||+++|.+|++
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~ 241 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID 241 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCccc-----CCccccc
Q 022407 241 VCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKR-----GIGVFDY 284 (297)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~-----g~Gfy~y 284 (297)
++..+++.+++.+++++|.|+++|++|+++|++|+|+ |+|||+|
T Consensus 242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y 290 (291)
T PRK06035 242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290 (291)
T ss_pred HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeec
Confidence 9999999999999988899999999999999999999 9999999
No 17
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.6e-60 Score=415.95 Aligned_cols=271 Identities=32% Similarity=0.477 Sum_probs=259.1
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC--ccc-ccCC
Q 022407 16 MGSGIAQLGVMDGLDVWLVDTDPD-------ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN--LKD-LHSA 85 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~-~~~a 85 (297)
||++||..++.+|++|++||++++ .++++.+++++.+++++++|.++.++.+..+++++++++ ..+ +++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467799999999999999999998888888999998865 334 8999
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHH
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDET 165 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~ 165 (297)
|+||||+||+.++|+.+|+++.+.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||+.+..|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhchHHH
Q 022407 166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIGLDVC 242 (297)
Q Consensus 166 ~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~Gl~~~ 242 (297)
++++.++++.+|+.+++++|.+||++||++.++++|++.++++|++++++||.+++.|+||| +|||+++|.+|++.+
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~ 240 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL 240 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCC
Q 022407 243 LSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~ 286 (297)
..+++.+++.+++++|.|++++++|+++|++|+|+|+|||+|++
T Consensus 241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~ 284 (314)
T PRK08269 241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG 284 (314)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence 99999999988887899999999999999999999999999965
No 18
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.9e-59 Score=407.68 Aligned_cols=279 Identities=27% Similarity=0.403 Sum_probs=250.3
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+++++.++.+.+.|. .. .....+++.++++++ +
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-AP---GASPARLRFVATIEACV 81 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Ch---hhHHhhceecCCHHHHh
Confidence 368999999999999999999999999999999999999999999999988887763 32 233467888888876 8
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||||+||+.++|+.+|+++.+.+++++||.||||+++++++++.+.+|.|++++||||||+.+++|||+++..|+
T Consensus 82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~ 161 (321)
T PRK07066 82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTA 161 (321)
T ss_pred cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG 238 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G 238 (297)
+++++++..+++.+|++|+++ +|.|||++||++.++++||++++++|+++++|||.+++.|+|+| +|||+++|.+|
T Consensus 162 ~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~G 241 (321)
T PRK07066 162 PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAG 241 (321)
T ss_pred HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcC
Confidence 999999999999999999998 79999999999999999999999999999999999999999998 89999999999
Q ss_pred hHH-HHHHHHHHHhhcCCC--CCCCcHHHHHHHH------cCCCCcccCCcccccCC
Q 022407 239 LDV-CLSIMKVLHTGLGDS--KYAPCPLLVQYVD------AGRLGKKRGIGVFDYRR 286 (297)
Q Consensus 239 l~~-~~~~~~~~~~~~~~~--~~~~~~~l~~~~~------~g~~G~~~g~Gfy~y~~ 286 (297)
++. ....++++.+.+.++ .+.+++++.++++ ++.+|.++..+||.|.+
T Consensus 242 ld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd 298 (321)
T PRK07066 242 GDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD 298 (321)
T ss_pred hHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 997 444556665554321 2344556666666 68999999999999975
No 19
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.2e-53 Score=374.04 Aligned_cols=279 Identities=37% Similarity=0.585 Sum_probs=249.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+.+..+.+.+. ......+++.++++++ +
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999998887766554433222211 0012345667777776 8
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||+|+|++.+.++.+++++.+.++++++|+|+|++++++++++.+.++.+++++||++||...++++++++..++
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999988888899999999999988899999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEec-cchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407 163 DETFRATKALAERFGKTVVCSQ-DYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG 238 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~~-d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G 238 (297)
+++++.+.++++.+|+.+++++ +.+||++||++.++++||+.++++|+++++++|.+++.++||| +|||+++|.+|
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999885 7899999999999999999999999999999999999999999 69999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCCCCcccCCcccccCCCC
Q 022407 239 LDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRVP 288 (297)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~~ 288 (297)
++.+..+++.+++.+++ +|.|++++++|+++|++|+|+|+|||+|+++.
T Consensus 238 l~~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~ 286 (311)
T PRK06130 238 LDVHLAVASYLYQDLEN-RTTPSPLLEEKVEAGELGAKSGQGFYAWPPER 286 (311)
T ss_pred cchHHHHHHHHHHhcCC-cCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence 99999999999998876 79999999999999999999999999997643
No 20
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-45 Score=325.35 Aligned_cols=266 Identities=28% Similarity=0.399 Sum_probs=248.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..++.+.+.|.++.++......+++.++++++ ++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999999999999999999998889998877666777788888889876 79
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChH
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSD 163 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~ 163 (297)
+||+||+|+|++.++++.+++++.+.+++++++.|+|++++++++++.+.++.++++.||++|++..+++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998899999999999998889999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhh--
Q 022407 164 ETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFI-- 237 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~-- 237 (297)
+++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++++++||.+++.|+|++ +|||++.|..
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~ 241 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAP 241 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcccc
Confidence 99999999999999999999 58899999999999999999999999999999999999999998 8999999987
Q ss_pred -chHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHc
Q 022407 238 -GLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDA 270 (297)
Q Consensus 238 -Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (297)
|++........++..+.++++.|+|++.++++.
T Consensus 242 ~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (308)
T PRK06129 242 GGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR 275 (308)
T ss_pred ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence 899999999999999988889999999988874
No 21
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=1.2e-40 Score=310.18 Aligned_cols=246 Identities=25% Similarity=0.395 Sum_probs=208.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
+++||+|||+|.||++||..|+++|++|++||+++++++.+.+.++.....+. .+... .....+++++++++++ +
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~g~i~~~~~~~ea~ 78 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYA---MLTDA-PLPPEGRLTFCASLAEAV 78 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHh---hhccc-hhhhhhceEeeCCHHHHh
Confidence 36799999999999999999999999999999999988776544333222111 11110 0011235678888875 8
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||+|+||+.++|+.+++++.+.++++++|.|+||+++++++++.+.++.+++..|||+||+..+++|+++++.|+
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCC---ccHHHHHHhhc
Q 022407 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQP---MGPLQLADFIG 238 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~---~Gp~~~~D~~G 238 (297)
++++++++++++.+|++++++ ++.+||++||++.++++||+.++++|++++++||.+++.|+|++ +|||++.|+.|
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 999999999999999999998 58999999999999999999999999999999999999988775 79999999998
Q ss_pred hH-HHHHHHHHHHhhc
Q 022407 239 LD-VCLSIMKVLHTGL 253 (297)
Q Consensus 239 l~-~~~~~~~~~~~~~ 253 (297)
++ .....++++.+.+
T Consensus 239 ~~~g~~~~~~~~~~~~ 254 (495)
T PRK07531 239 GEAGMRHFLAQFGPCL 254 (495)
T ss_pred cHHHHHHHHHHhchhh
Confidence 54 3444445544433
No 22
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.6e-41 Score=275.39 Aligned_cols=179 Identities=47% Similarity=0.693 Sum_probs=161.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD 86 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 86 (297)
||+|||+|.||++||..++.+|++|++||++++.++.+.+++++.++.++++|.+++++.+....+++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999977999
Q ss_pred EEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHH
Q 022407 87 IIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETF 166 (297)
Q Consensus 87 ~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~ 166 (297)
+||||+||+.++|+++|++|++.+++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEecc
Q 022407 167 RATKALAERFGKTVVCSQD 185 (297)
Q Consensus 167 ~~~~~l~~~lG~~~v~~~d 185 (297)
+++..+++.+|+.|++++|
T Consensus 161 ~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHHHCCCEEEEecC
Confidence 9999999999999999876
No 23
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=282.85 Aligned_cols=265 Identities=30% Similarity=0.414 Sum_probs=247.0
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCcEEEEecccC
Q 022407 16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVES 95 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~ 95 (297)
||++||..+..+|++|++.|.+...++....++...+...+..+.++..+......+++.+.|++.++++|+||+++.|+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999999999999999889999999888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHH
Q 022407 96 EDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAER 175 (297)
Q Consensus 96 ~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~ 175 (297)
.++|++++.+|++.+++++|+.+|||++++.++++.+++++.++|+|||.|.+.++++|++.+..|+..+...+.+.-..
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCC
Q 022407 176 FGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGD 255 (297)
Q Consensus 176 lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~ 255 (297)
.|+.|+++++.+||.+||++.++.+++.+++.+-++++..+|...+ -+|||+||+.+.|..|+++..+.-..+...+++
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t-~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~ 239 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLIT-KFGFRVGERALADGVGFDVAEALAVGLGDEIGP 239 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHH-hcCccccHHHHhhccCccHHHHHhhccchhccc
Confidence 9999999999999999999999999999999996689999999987 599999999999999999877665554333333
Q ss_pred CCCCCcHHHHHHHHcCCCCcccCCcccccCCC
Q 022407 256 SKYAPCPLLVQYVDAGRLGKKRGIGVFDYRRV 287 (297)
Q Consensus 256 ~~~~~~~~l~~~~~~g~~G~~~g~Gfy~y~~~ 287 (297)
. +..++++.|+.|+|+|+|||.|++.
T Consensus 240 -----r-~~eel~~~~~~g~kT~kg~y~y~~~ 265 (380)
T KOG1683|consen 240 -----R-IEEELLEKGRAGIKTGKGIYPYARG 265 (380)
T ss_pred -----h-hHHHHHHHHhhhhhccCcccccccc
Confidence 2 6889999999999999999999875
No 24
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-38 Score=251.23 Aligned_cols=233 Identities=29% Similarity=0.425 Sum_probs=216.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~ 82 (297)
..||+|+|.|.+|++||..|+..||+|.+||+.++++..+.+.+++.+.++.++|.+.+. .+++.+..|+.++++.+ +
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 579999999999999999999999999999999999999999999999998888765432 45666788888999988 8
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++|=.|.||+||+.++|..++++|+..+.+.+|+.|+||++.++.+.+.+.+.++++..||+|||...|++|+++.+-|+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs 162 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS 162 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEe-ccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCc---cHHHHHHhh
Q 022407 163 DETFRATKALAERFGKTVVCS-QDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPM---GPLQLADFI 237 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~-~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~---Gp~~~~D~~ 237 (297)
|+++++.+++++.+|.+|+.. .+..||..||+.++++||..++++.|+.+..|+|.+|..|+|.+. ||++.+.+.
T Consensus 163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 999999999999999988854 678899999999999999999999999999999999999999874 999998654
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.98 E-value=3.2e-31 Score=246.61 Aligned_cols=168 Identities=27% Similarity=0.384 Sum_probs=155.8
Q ss_pred hccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 109 ITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 109 ~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
.+++++++.+++++.+.+..+....+|.+++++|||+|++.++++||+.+..|++++++.+..+++.+|+.|++++|.+|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G 416 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG 416 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence 45667788877777666677666677899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHH
Q 022407 189 FIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYV 268 (297)
Q Consensus 189 ~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (297)
|++||++.+++|||++++++|+++++|||.+++.|+|||+|||+|+|.+|++.++.+++.+++.+++++|+|+++|++|+
T Consensus 417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v 496 (507)
T PRK08268 417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HcCCCCcccCCcccc
Q 022407 269 DAGRLGKKRGIGVFD 283 (297)
Q Consensus 269 ~~g~~G~~~g~Gfy~ 283 (297)
++| +.||.
T Consensus 497 ~~G-------~~~~~ 504 (507)
T PRK08268 497 ALG-------LSLRS 504 (507)
T ss_pred HcC-------CCcCC
Confidence 986 46865
No 26
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.96 E-value=7.9e-30 Score=186.66 Aligned_cols=97 Identities=51% Similarity=0.908 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHH
Q 022407 188 GFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQY 267 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 267 (297)
||++||++.++++||++++++|++++++||.+++.++|||+|||+++|.+|++++..+++.+++.++++.|+|++++++|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m 80 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM 80 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999778999999999
Q ss_pred HHcCCCCcccCCccccc
Q 022407 268 VDAGRLGKKRGIGVFDY 284 (297)
Q Consensus 268 ~~~g~~G~~~g~Gfy~y 284 (297)
+++|++|+|+|+|||+|
T Consensus 81 v~~g~~G~k~g~Gfy~Y 97 (97)
T PF00725_consen 81 VEEGRLGRKSGKGFYDY 97 (97)
T ss_dssp HHTT--BGGGTBSSSBE
T ss_pred HHCCCCcCcCCCcceeC
Confidence 99999999999999998
No 27
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.94 E-value=3.9e-26 Score=212.04 Aligned_cols=122 Identities=31% Similarity=0.499 Sum_probs=117.7
Q ss_pred cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccH
Q 022407 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGVATKEDIDAGMKLGTNQPMGP 230 (297)
Q Consensus 151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~~~g~g~~~Gp 230 (297)
..+||+++..|++++++.+..+++++|+.|++++|.|||++||++.+++|||++++++|+++++|||.+++.|+|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHcCC
Q 022407 231 LQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLLVQYVDAGR 272 (297)
Q Consensus 231 ~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 272 (297)
|+|+|.+|++.+..+++.+++.+++++|+|+++|++++..|.
T Consensus 458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g~ 499 (503)
T TIGR02279 458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLGS 499 (503)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcCC
Confidence 999999999999999999999999879999999999998864
No 28
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.93 E-value=6.2e-24 Score=181.34 Aligned_cols=190 Identities=23% Similarity=0.302 Sum_probs=146.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL-VRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (297)
+||+|||+|.||.+||.+|.++||+|++|||++++. +.+ .+.|. ....++. .++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~-----------~~~Ga-------------~~a~s~~eaa~ 56 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELL-----------AAAGA-------------TVAASPAEAAA 56 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHH-----------HHcCC-------------cccCCHHHHHH
Confidence 489999999999999999999999999999999984 333 44454 3455554 489
Q ss_pred CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCC-------cc
Q 022407 84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
+||+||.|+|++.++...++. .+.+.++++++++ ++|.++.. .++++.+ .-.|.+|++.|-.. +.
T Consensus 57 ~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~----~~~G~~~lDAPVsGg~~~A~~Gt 132 (286)
T COG2084 57 EADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAAL----AAKGLEFLDAPVSGGVPGAAAGT 132 (286)
T ss_pred hCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHH----HhcCCcEEecCccCCchhhhhCc
Confidence 999999999999998888885 4666677777766 33333332 4566554 23467788877322 23
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT 224 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~ 224 (297)
+.|+.| ++++.+++++++|+.+|++++++++. .| .++|+++.. .+.||+.+.++.+++++.+..+++.+.
T Consensus 133 LtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~ 210 (286)
T COG2084 133 LTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGA 210 (286)
T ss_pred eEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Confidence 567766 89999999999999999999999875 33 488888764 568999999999999999999998764
Q ss_pred C
Q 022407 225 N 225 (297)
Q Consensus 225 g 225 (297)
+
T Consensus 211 ~ 211 (286)
T COG2084 211 A 211 (286)
T ss_pred c
Confidence 4
No 29
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.88 E-value=2.6e-21 Score=169.59 Aligned_cols=188 Identities=21% Similarity=0.340 Sum_probs=140.5
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA 85 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a 85 (297)
+|+|||+|.||.+||..|+++|++|++||+++++++.+ .+.|. ...++.++ +++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-----------LAAGA-------------VTAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------cccCCHHHHHhcC
Confidence 59999999999999999999999999999999887665 33343 12334444 7899
Q ss_pred cEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCC-------Ccce
Q 022407 86 DIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPL-------MKLV 153 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v 153 (297)
|+||+|+|++..++..++. .+.+.++++++|+. +|+.++ +++.+.+... +.||+++|-. .+.+
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l 131 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTL 131 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCE
Confidence 9999999998877766553 25566677777773 334433 3566555321 4555554421 1235
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407 154 EVIRGADTSDETFRATKALAERFGKTVVCSQD-YAG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
.++.+ ++++++++++++++.+|++++++++ .++ +++|+++... ++|++.++++.+++++++..++..+.+
T Consensus 132 ~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 132 SIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 66666 6789999999999999999999975 455 4888888754 899999999999999999999986654
No 30
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.87 E-value=1.4e-20 Score=165.31 Aligned_cols=189 Identities=20% Similarity=0.325 Sum_probs=141.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..|++.|++|++||+++++.+.+ .+.|. ...+++++ +++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~ 58 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-----------IAAGA-------------ETASTAKAVAEQ 58 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHCCC-------------eecCCHHHHHhc
Confidence 589999999999999999999999999999999877654 23332 34555655 789
Q ss_pred CcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCC-------cc
Q 022407 85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KL 152 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~ 152 (297)
||+||+|+|++.+++..++. .+.+.++++++|+ ++|+.++ +++++.+.. .+.||+++|-.. +.
T Consensus 59 ~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 59 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred CCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCc
Confidence 99999999988877665543 3666677888777 3444443 355555432 255666665222 33
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhcc
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGT 224 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~ 224 (297)
+.++.+ ++++++++++++++.+|+.++++++ .+|+ ++|+++.. +++|++.++++.++++++++.+++.+.
T Consensus 134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 566665 6789999999999999999998865 4555 57777654 589999999998899999999988665
Q ss_pred C
Q 022407 225 N 225 (297)
Q Consensus 225 g 225 (297)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 4
No 31
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.87 E-value=1e-20 Score=158.81 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=146.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++||+||+|.||++|+.+|.++||.|++|||+.++.+.+ .+.|. ++.+++.+ ++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f-----------~~~Ga-------------~v~~sPaeVae 90 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEF-----------QEAGA-------------RVANSPAEVAE 90 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHH-----------HHhch-------------hhhCCHHHHHh
Confidence 4789999999999999999999999999999999988776 66665 46667777 88
Q ss_pred CCcEEEEecccCHHHHHHHHHH---HHhhccCCeE-EeecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------Cc
Q 022407 84 SADIIVEAIVESEDVKKKLFSE---LDKITKASAI-LASNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------MK 151 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~---l~~~~~~~~i-i~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~~ 151 (297)
+||+||.++|+..+++..++.. +....+.... |.++|+.... .+|++..... +..|++.|-- .+
T Consensus 91 ~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSGg~~~A~~G 166 (327)
T KOG0409|consen 91 DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSGGVKGAEEG 166 (327)
T ss_pred hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccCCchhhhcC
Confidence 9999999999999998888775 3333344444 5666665554 5777765322 3344454411 12
Q ss_pred ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407 152 LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILMPM----INEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 152 ~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~~~----~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
.+.++.+ ++++.++++.++|+.+||++++++.. .| .++|+++... +.|++.+.+.-+.|+..+-.++..|
T Consensus 167 ~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 167 TLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred eEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 3566666 89999999999999999999998653 33 4888887643 6799999998888998888888776
Q ss_pred cCC
Q 022407 224 TNQ 226 (297)
Q Consensus 224 ~g~ 226 (297)
..|
T Consensus 245 ~~~ 247 (327)
T KOG0409|consen 245 RCW 247 (327)
T ss_pred Ccc
Confidence 655
No 32
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.82 E-value=6.1e-18 Score=147.21 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=117.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|+|||+|.||.++|..|.++|++|++||++++.++.+ .+.|... ...++.+.+++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~a 58 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-----------IERGLVD-----------EASTDLSLLKDC 58 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHCCCcc-----------cccCCHhHhcCC
Confidence 379999999999999999999999999999999887765 3334321 123344457899
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC------------Ccce
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL------------MKLV 153 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~------------~~~v 153 (297)
|+||+|+|.+.. ..+++++.+.++++++|. +++++....+........++++.||+.++.. ....
T Consensus 59 DlVilavp~~~~--~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~ 135 (279)
T PRK07417 59 DLVILALPIGLL--LPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW 135 (279)
T ss_pred CEEEEcCCHHHH--HHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence 999999997653 457788888888887775 5566665545444344457999999875532 1234
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 154 EVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
.++++..++++.++.+.++++.+|.++++++.
T Consensus 136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 136 VLTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EEccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 57788888999999999999999999988754
No 33
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.81 E-value=2e-18 Score=151.40 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=132.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.+||..|+++||+|++||+++++.+.+ .+.|. ...++..+ +++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDAL-----------VDKGA-------------TPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------cccCCHHHHHhc
Confidence 489999999999999999999999999999999887765 33332 23445554 789
Q ss_pred CcEEEEecccCHHHHHHHHH--HHHhhccCCeEEeecCCCccH---HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEe
Q 022407 85 ADIIVEAIVESEDVKKKLFS--ELDKITKASAILASNTSSISI---TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVI 156 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~ 156 (297)
||+||.|+|++..++..+.. .+.+.++++.+++ ++|+.++ .++++.+. +..+++.......+.. .+.+.++
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~ 136 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL 136 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence 99999999988776655543 3555566777665 3444444 35555442 2223333222221110 1123355
Q ss_pred cCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407 157 RGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
.| ++++++++++++|+.+|++++++++. .| .++|+++. ..+.|++.++++.+++++.+-.++..+
T Consensus 137 ~g--g~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~ 209 (296)
T PRK15461 137 AG--GTAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGT 209 (296)
T ss_pred EC--CCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 44 78999999999999999999998763 22 36666543 457899999999889998877776644
No 34
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.80 E-value=3.7e-18 Score=149.14 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=129.5
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA 85 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a 85 (297)
||+|||+|.||.+||.+|.++||+|++||+++. .+.+ .+.|. ...++..+ ++.|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~-------------~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA-------------VSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC-------------eecCCHHHHHhcC
Confidence 799999999999999999999999999999864 2322 23342 23445555 7899
Q ss_pred cEEEEecccCHHHHHHHHHH--HHhhccCCeEEe-ecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEecC
Q 022407 86 DIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVIRG 158 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~~~ 158 (297)
|+||.|+|++..++..++.+ +.+.++++.+++ ++|.++.. .++++.+. +..+++.......+.. .+.+.++.+
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEc
Confidence 99999999987776665542 444455666555 33333322 34555442 2334444321111111 112344544
Q ss_pred CCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407 159 ADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
++++++++++++|+.+|++++++++. .| .++|+++. ..+.|++.+.++.+++++.+-.++..+.+
T Consensus 137 --G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 137 --GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred --CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 78999999999999999999999773 22 36667664 35789999999988899887777765554
No 35
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.78 E-value=2.1e-19 Score=143.96 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=101.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++|+|||+|.||++||.+|+++||+|++||+++++.+++ .+.| .+..+++++ ++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~-----------~~~g-------------~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL-----------AEAG-------------AEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH-----------HHTT-------------EEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhh-----------HHhh-------------hhhhhhhhhHhh
Confidence 3689999999999999999999999999999999988776 4444 357778877 78
Q ss_pred CCcEEEEecccCHHHHHHHHHH--HHhhccCCeEEe-ecCCCccH-HHHhhhcC-CCCeEEEeecCCCCCC--CcceeEe
Q 022407 84 SADIIVEAIVESEDVKKKLFSE--LDKITKASAILA-SNTSSISI-TRLASATS-RPCQVIGMHFMNPPPL--MKLVEVI 156 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~--l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~-~~~~~~g~h~~~p~~~--~~~vev~ 156 (297)
.||+||.|+|++.+++. ++.. +.+.++++.+++ ++|+++.. .++++.+. +..+++.......|.. .+.+.++
T Consensus 57 ~~dvvi~~v~~~~~v~~-v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~ 135 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEA-VLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM 135 (163)
T ss_dssp HBSEEEE-SSSHHHHHH-HHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred cccceEeecccchhhhh-hhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence 99999999998777654 4444 666666776665 43433332 35555542 2233333322221111 1123455
Q ss_pred cCCCChHHHHHHHHHHHHHhCCeEEE-ec
Q 022407 157 RGADTSDETFRATKALAERFGKTVVC-SQ 184 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~lG~~~v~-~~ 184 (297)
.+ ++++++++++++|+.++.++++ ++
T Consensus 136 ~g--G~~~~~~~~~~~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 136 VG--GDEEAFERVRPLLEAMGKNVYHYVG 162 (163)
T ss_dssp EE--S-HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred cc--CCHHHHHHHHHHHHHHhCCceeeeC
Confidence 55 7899999999999999999884 35
No 36
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.78 E-value=1.8e-17 Score=145.00 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=133.1
Q ss_pred EECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCCcEE
Q 022407 10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSADII 88 (297)
Q Consensus 10 iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~V 88 (297)
|||+|.||.+||..|+++||+|++||+++++.+.+ .+.|. ..++++.+ +++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~g~-------------~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEA-----------VAAGA-------------QAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHhcCCEE
Confidence 68999999999999999999999999999887765 33332 34555655 7899999
Q ss_pred EEecccCHHHHHHHH--HHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCC-------cceeEe
Q 022407 89 VEAIVESEDVKKKLF--SELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLM-------KLVEVI 156 (297)
Q Consensus 89 i~~v~e~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~-------~~vev~ 156 (297)
|.|+|.+..+...++ ..+.+.++++.+++. +|++++ .++++.+.. .|.+|.+.|-.. +.+.++
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~ 131 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFM 131 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEE
Confidence 999998776544433 456666677776663 335554 344444321 245555554221 123444
Q ss_pred cCCCChHHHHHHHHHHHHHhCCeEEEecc-chhh---hHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHhhccC
Q 022407 157 RGADTSDETFRATKALAERFGKTVVCSQD-YAGF---IVNRILMP----MINEAFFTLYTGVATKEDIDAGMKLGTN 225 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~---i~nri~~~----~~~Ea~~l~~~g~~~~~~id~a~~~g~g 225 (297)
.+ ++++.+++++++|+.+|++++++++ ..|. ++|+++.. .++|++.++++.+++++++..++..+.|
T Consensus 132 ~g--g~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 132 VG--GVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred EC--CCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 44 6789999999999999999999986 3443 77776643 5789999999998999999888886654
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.77 E-value=7.7e-17 Score=139.52 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=117.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+ .+.|. ...++..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~-----------~~~g~-------------~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVF-----------QSLGV-------------KTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHH-----------HHcCC-------------EEeCChH
Confidence 479999999999999999999998 89999 9998876554 33332 3455555
Q ss_pred c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecC
Q 022407 81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG 158 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~ 158 (297)
+ +++||+||.|++ +. ...+++.++.+.++++.+|+|.+++++.+.+.+..+.. +++..+|..|........ ++.+
T Consensus 57 e~~~~aDvVil~v~-~~-~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK-PQ-VVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC-cH-HHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 5 789999999996 33 36677778877778888888888999998888776543 677777766654444333 5566
Q ss_pred CCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 159 ADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 159 ~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
..++++.++.++++|+.+|. ++++.+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e 159 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDE 159 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 67789999999999999999 777643
No 38
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.77 E-value=2.3e-17 Score=152.07 Aligned_cols=192 Identities=14% Similarity=0.194 Sum_probs=131.0
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..++|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+.. ...|. ..+...+++++ +
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga----------~~~~~a~s~~e~v 67 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGN----------LPLYGFKDPEDFV 67 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCC----------cccccCCCHHHHH
Confidence 357899999999999999999999999999999999887763210 00121 01234556655 4
Q ss_pred c---CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------C
Q 022407 83 H---SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------M 150 (297)
Q Consensus 83 ~---~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~ 150 (297)
+ .+|+||.|+|.+..+.. ++..+.+.+.++.|++ ++|+++.. .++++.+. -.|.||++.|-. .
T Consensus 68 ~~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~----~~Gi~fldapVSGG~~gA~~ 142 (493)
T PLN02350 68 LSIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAA----EKGLLYLGMGVSGGEEGARN 142 (493)
T ss_pred hcCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEeCCCcCCHHHhcC
Confidence 3 49999999998887655 4466777776665555 44444333 34554442 124455554411 1
Q ss_pred cceeEecCCCChHHHHHHHHHHHHHhCCe------EEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc-CCCCHHH
Q 022407 151 KLVEVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRILM----PMINEAFFTLYT-GVATKED 215 (297)
Q Consensus 151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~------~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~-g~~~~~~ 215 (297)
+. .++.| ++++++++++++|+.++.+ ++++++. .| .++|+.+. ..+.|++.++++ .+.++++
T Consensus 143 G~-~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~ 219 (493)
T PLN02350 143 GP-SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEE 219 (493)
T ss_pred CC-eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 12 46666 8999999999999999964 7888763 23 25555543 467899999988 3789988
Q ss_pred HHHHH
Q 022407 216 IDAGM 220 (297)
Q Consensus 216 id~a~ 220 (297)
+-.++
T Consensus 220 l~~vf 224 (493)
T PLN02350 220 LAEVF 224 (493)
T ss_pred HHHHH
Confidence 88774
No 39
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.75 E-value=1.4e-16 Score=140.02 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=128.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.+||..|+++|++|++||+++++.+.+ .+.|. +..+++++ ++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~s~~~~~~~ 56 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVA-----------GKLGI-------------TARHSLEELVSK 56 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHHh
Confidence 379999999999999999999999999999999877654 33332 34555555 443
Q ss_pred ---CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCcc-HHHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407 85 ---ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-ITRLASATSRPCQVIGMHFMNPPPLMK------LV 153 (297)
Q Consensus 85 ---aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~~l~~~~~~~~~~~g~h~~~p~~~~~------~v 153 (297)
+|+||.|+|.+..++ .++..+.+.++++.+++ ++|++.. ..++++.+.. .+.+|++.|-..+ ..
T Consensus 57 ~~~advVi~~vp~~~~~~-~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~ 131 (299)
T PRK12490 57 LEAPRTIWVMVPAGEVTE-SVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGY 131 (299)
T ss_pred CCCCCEEEEEecCchHHH-HHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCC
Confidence 699999999876544 45567777676666665 3333332 2455555421 1344555441111 11
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCC---eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHH
Q 022407 154 EVIRGADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYTGV--ATKEDIDAGM 220 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~---~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~--~~~~~id~a~ 220 (297)
.++.+ ++++++++++++++.+|. +++++++. .| .++|+++. ..+.|++.++++.+ .+++++-.++
T Consensus 132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 132 CLMVG--GDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred eEEec--CCHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 34444 789999999999999997 78888763 22 26666553 45789999999877 7888888888
Q ss_pred hh
Q 022407 221 KL 222 (297)
Q Consensus 221 ~~ 222 (297)
..
T Consensus 210 ~~ 211 (299)
T PRK12490 210 RN 211 (299)
T ss_pred cC
Confidence 74
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.75 E-value=8.2e-17 Score=141.65 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=129.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH- 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 83 (297)
++|+|||+|.||.+||..|+++|++|++||+++++.+.+ .+.|. +..+++++ ++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~-----------~~~g~-------------~~~~~~~e~~~~ 56 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEAL-----------AEEGA-------------TGADSLEELVAK 56 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-----------HHCCC-------------eecCCHHHHHhh
Confidence 379999999999999999999999999999999887665 33332 34555554 33
Q ss_pred --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec-CCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407 84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASN-TSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LV 153 (297)
Q Consensus 84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~-ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~v 153 (297)
++|+||.++|.+..+ ..++..+...++++.+++.. |++... .++++.+.. .|.+|++.|-..+ ..
T Consensus 57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~ 131 (301)
T PRK09599 57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY 131 (301)
T ss_pred cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence 379999999987554 34556676777766666533 333322 345444421 2345555442111 12
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCC----eEEEeccc-hh---hhHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHH
Q 022407 154 EVIRGADTSDETFRATKALAERFGK----TVVCSQDY-AG---FIVNRILM----PMINEAFFTLYT--GVATKEDIDAG 219 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~----~~v~~~d~-~g---~i~nri~~----~~~~Ea~~l~~~--g~~~~~~id~a 219 (297)
.++.+ ++++++++++++++.+++ +++++++. .| .++|+.+. ..+.|++.++++ .+++++++-.+
T Consensus 132 ~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 132 CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred eEEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35544 799999999999999999 78888773 22 25555443 346899999987 77899999998
Q ss_pred Hhhc
Q 022407 220 MKLG 223 (297)
Q Consensus 220 ~~~g 223 (297)
++.|
T Consensus 210 ~~~~ 213 (301)
T PRK09599 210 WRRG 213 (301)
T ss_pred HhCC
Confidence 8854
No 41
>PLN02858 fructose-bisphosphate aldolase
Probab=99.74 E-value=7.9e-17 Score=164.73 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|||||+|.||.+||.+|+++||+|++||+++++.+.+ .+.|. ...+++.+ ++
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~a~ 59 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKF-----------CELGG-------------HRCDSPAEAAK 59 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence 4689999999999999999999999999999999988776 44553 35566666 77
Q ss_pred CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEE--eecCCCCCCC-------
Q 022407 84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIG--MHFMNPPPLM------- 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g--~h~~~p~~~~------- 150 (297)
+||+||.|+|++..++..++. .+.+.++++.+++ ++|.++.. .++++.+.. .| .+|++.|-..
T Consensus 60 ~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~ 135 (1378)
T PLN02858 60 DAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN 135 (1378)
T ss_pred cCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence 899999999999887766653 3555555666554 44444333 456555432 23 4455554211
Q ss_pred cceeEecCCCChHHHHHHHHHHHHHhCCeEEEe-ccc-hh---hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHh
Q 022407 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCS-QDY-AG---FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~-~d~-~g---~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
+.+.++.| ++++++++++++|+.+|++++++ ++. .| .++|+++. ..+.||+.+.++.+++++.+-.++.
T Consensus 136 G~L~imvG--G~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 136 GKLMIIAS--GRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred CCeEEEEc--CCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 22445555 78999999999999999998865 542 23 37777765 3578999999998899999988888
Q ss_pred hccC
Q 022407 222 LGTN 225 (297)
Q Consensus 222 ~g~g 225 (297)
.+.|
T Consensus 214 ~s~g 217 (1378)
T PLN02858 214 NAAG 217 (1378)
T ss_pred cCCc
Confidence 7665
No 42
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.73 E-value=4.7e-16 Score=136.55 Aligned_cols=190 Identities=16% Similarity=0.168 Sum_probs=128.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD---- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 81 (297)
|+|+|||+|.||..||..|+++|++|.+||+++++.+.+ .+.|.. ...++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l-----------~~~g~~-------------~~~s~~~~~~~ 56 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAM-----------KEDRTT-------------GVANLRELSQR 56 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCc-------------ccCCHHHHHhh
Confidence 379999999999999999999999999999999987766 333321 1223222
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhc-CCCCeEEEeecCCCCC--CCcceeEe
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASAT-SRPCQVIGMHFMNPPP--LMKLVEVI 156 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~-~~~~~~~g~h~~~p~~--~~~~vev~ 156 (297)
+..+|+||.|+|.+ . .+.++.++.+.++++.+++..+++.+ ..++...+ ....+++..+....+. ..+ .-++
T Consensus 57 ~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~ 133 (298)
T TIGR00872 57 LSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFM 133 (298)
T ss_pred cCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-Ceee
Confidence 45789999999987 4 56677888888877777765544432 23444433 2223444433332221 112 2344
Q ss_pred cCCCChHHHHHHHHHHHHHhCC---eEEEeccc-hh---hhHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHhhc
Q 022407 157 RGADTSDETFRATKALAERFGK---TVVCSQDY-AG---FIVNRIL-M---PMINEAFFTLYTG--VATKEDIDAGMKLG 223 (297)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~lG~---~~v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~~g--~~~~~~id~a~~~g 223 (297)
.+ +++++++.++++|+.++. ..+++++. .| .++++.+ . ..+.|++.++++. ..+.+++-.+++.|
T Consensus 134 ~g--G~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g 211 (298)
T TIGR00872 134 IG--GDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRG 211 (298)
T ss_pred eC--CCHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCC
Confidence 44 789999999999999986 46788763 22 2444443 3 4578999999884 36899999998876
Q ss_pred c
Q 022407 224 T 224 (297)
Q Consensus 224 ~ 224 (297)
.
T Consensus 212 ~ 212 (298)
T TIGR00872 212 S 212 (298)
T ss_pred c
Confidence 4
No 43
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.73 E-value=5.5e-16 Score=142.14 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=132.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
|+|+|||+|.||.++|..|+++||+|++||+++++++.+.+... ..++.+..+. ...+++++++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYED 72 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHH
Confidence 47999999999999999999999999999999998877532110 0001111000 01234567777776
Q ss_pred -ccCCcEEEEecccCHH--------HHHHHHHHHHhhccCCeEEeecCCCccH---HHHhh-hcCC------C-CeEEEe
Q 022407 82 -LHSADIIVEAIVESED--------VKKKLFSELDKITKASAILASNTSSISI---TRLAS-ATSR------P-CQVIGM 141 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~--------~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~-~~~~------~-~~~~g~ 141 (297)
+++||+||.|+|++.. ....+...+.+.++++++++. +|++++ .++.. .+.. . .-.+..
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~ 151 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAY 151 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEE
Confidence 8899999999998642 244556677777777776653 334433 23432 2111 0 111222
Q ss_pred ecCCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhC-CeEEEeccch-h---hhHHHHH----HHHHHHHH
Q 022407 142 HFMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDYA-G---FIVNRIL----MPMINEAF 203 (297)
Q Consensus 142 h~~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG-~~~v~~~d~~-g---~i~nri~----~~~~~Ea~ 203 (297)
+ |....+ ...++.| .+++.+++++++++.++ ..++++++.. + .++++++ .+++||++
T Consensus 152 ~---Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~ 226 (411)
T TIGR03026 152 N---PEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELA 226 (411)
T ss_pred C---CCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222111 1145666 68999999999999998 5777776532 1 3555555 57899999
Q ss_pred HHHHcCCCCHHHHHHHHhh
Q 022407 204 FTLYTGVATKEDIDAGMKL 222 (297)
Q Consensus 204 ~l~~~g~~~~~~id~a~~~ 222 (297)
.+++.-+++++++-.++..
T Consensus 227 ~la~~~GiD~~~v~~~~~~ 245 (411)
T TIGR03026 227 RICEALGIDVYEVIEAAGT 245 (411)
T ss_pred HHHHHhCCCHHHHHHHhCC
Confidence 9999988999998877753
No 44
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.72 E-value=5.5e-16 Score=142.88 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=132.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH- 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~- 83 (297)
.+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+... ..|. .+..++++++ ++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHhc
Confidence 47999999999999999999999999999999999877632110 1121 1335566665 43
Q ss_pred --CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407 84 --SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK------LV 153 (297)
Q Consensus 84 --~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~------~v 153 (297)
.+|+||.+++....+ ..++.++.+.++++.||+..+++.+. ......+. -.|.||++.|-..+ ..
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~ 138 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP 138 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence 589999999876664 45667888888877777655554433 23333331 23566666552211 12
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCe------EEEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHH
Q 022407 154 EVIRGADTSDETFRATKALAERFGKT------VVCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDA 218 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~------~v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~ 218 (297)
.++.| ++++++++++++|+.++.+ ..++++. .| .++++.+ . ..+.|++.+++ ..+.+++++-.
T Consensus 139 ~lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~ 216 (470)
T PTZ00142 139 SLMPG--GNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSE 216 (470)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 46666 7999999999999999987 6788763 33 2444443 2 56789999997 46678888877
Q ss_pred HHh
Q 022407 219 GMK 221 (297)
Q Consensus 219 a~~ 221 (297)
++.
T Consensus 217 v~~ 219 (470)
T PTZ00142 217 VFN 219 (470)
T ss_pred HHH
Confidence 763
No 45
>PLN02858 fructose-bisphosphate aldolase
Probab=99.71 E-value=3.4e-16 Score=160.12 Aligned_cols=193 Identities=18% Similarity=0.214 Sum_probs=135.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|+|||+|.||.+||.+|+++||+|++||+++++.+.+ .+.|. ...++.++ ++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~Ga-------------~~~~s~~e~~~ 379 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRF-----------ENAGG-------------LAGNSPAEVAK 379 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHcCC-------------eecCCHHHHHh
Confidence 3789999999999999999999999999999999887765 33443 23455555 78
Q ss_pred CCcEEEEecccCHHHHHHHHH--HHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC-------Ccc
Q 022407 84 SADIIVEAIVESEDVKKKLFS--ELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL-------MKL 152 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~--~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~-------~~~ 152 (297)
+||+||.|+|++.+++..++. .+.+.++++.+++ ++|.++.. .++++.+.. .-.|.+|++.|-. .+.
T Consensus 380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~ 457 (1378)
T PLN02858 380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGT 457 (1378)
T ss_pred cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCC
Confidence 999999999988877666654 2444555555554 44444333 355554421 0124455554411 112
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-----hhHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHhhc
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-----FIVNRILM----PMINEAFFTLYTGVATKEDIDAGMKLG 223 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-----~i~nri~~----~~~~Ea~~l~~~g~~~~~~id~a~~~g 223 (297)
+.++.+ ++++.+++++++|+.+|++++++.+.+| .++|+++. ..++|++.++++.+++++.+-.++..+
T Consensus 458 L~imvg--G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s 535 (1378)
T PLN02858 458 LTIMAS--GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNA 535 (1378)
T ss_pred ceEEEE--CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 445554 6889999999999999998887543333 36777664 457899999999889999988877766
Q ss_pred cC
Q 022407 224 TN 225 (297)
Q Consensus 224 ~g 225 (297)
.|
T Consensus 536 ~g 537 (1378)
T PLN02858 536 GG 537 (1378)
T ss_pred cc
Confidence 54
No 46
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.71 E-value=1.9e-15 Score=130.84 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=130.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG---LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+++|+|||+|.||..++..|.++| ++|.+||+++++.+.+.+. .| +...++.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence 358999999999999999999999 7899999998876654211 12 123445554
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce-eEecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ev~~~~ 159 (297)
+.+||+||.|+|... ..++++++.+.+ +.+|+|.+++++.+.+...++...+++..||..|......+ .++++.
T Consensus 59 ~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 788999999997443 556777777665 46788888999988888887766788999998776444433 456777
Q ss_pred CChHHHHHHHHHHHHHhCCeEEEeccc-hh--h-hH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 022407 160 DTSDETFRATKALAERFGKTVVCSQDY-AG--F-IV---NRILMPMINEAFFTLYTGVATKEDIDAGM 220 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g--~-i~---nri~~~~~~Ea~~l~~~g~~~~~~id~a~ 220 (297)
.++++.++.++.+|+.+|..+++..+. .. . +. -.+++.++........+.+.++++....+
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 789999999999999999855443221 11 1 11 12223344444444444446766644433
No 47
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.70 E-value=1.3e-15 Score=137.78 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=122.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH----HHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS----SIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+.+.. .++++..+ ...+++.+.+.++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~----------~~~~l~~t~~~~~ 69 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQS----------DKIHFNATLDKNE 69 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHh----------CCCcEEEecchhh
Confidence 379999999999999988875 99999999999999887553321 11111111 1234555665555
Q ss_pred -ccCCcEEEEecccCHH---------HHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCC
Q 022407 82 -LHSADIIVEAIVESED---------VKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPL 149 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~---------~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~ 149 (297)
+++||+||+|+|++.+ ....+.+.+.+. +++.+++ .+|..+.. +++...+.. . ++.| +|...
T Consensus 70 ~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~~--~--~v~~-~PE~l 143 (388)
T PRK15057 70 AYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYRT--E--NIIF-SPEFL 143 (388)
T ss_pred hhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhhc--C--cEEE-Ccccc
Confidence 7899999999998732 223445666664 5555544 44444433 355544321 1 2222 44332
Q ss_pred Ccc-e--------eEecCCCChHHHHHHHHHHHHH--hCCeEE-Eeccc-hh---hhHHHHH----HHHHHHHHHHHHcC
Q 022407 150 MKL-V--------EVIRGADTSDETFRATKALAER--FGKTVV-CSQDY-AG---FIVNRIL----MPMINEAFFTLYTG 209 (297)
Q Consensus 150 ~~~-v--------ev~~~~~~~~~~~~~~~~l~~~--lG~~~v-~~~d~-~g---~i~nri~----~~~~~Ea~~l~~~g 209 (297)
.+. . .++.| ++++..+++.+++.. ++..+. ++.+. .+ .++++.+ .+++||+..++++-
T Consensus 144 ~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~ 221 (388)
T PRK15057 144 REGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESL 221 (388)
T ss_pred cCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 1 35555 345667778888754 555433 45543 22 2555554 46899999999998
Q ss_pred CCCHHHHHHHHh
Q 022407 210 VATKEDIDAGMK 221 (297)
Q Consensus 210 ~~~~~~id~a~~ 221 (297)
+++.+++-.++.
T Consensus 222 GiD~~eV~~a~~ 233 (388)
T PRK15057 222 GLNTRQIIEGVC 233 (388)
T ss_pred CcCHHHHHHHhc
Confidence 899998887763
No 48
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=6.5e-15 Score=127.31 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=120.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+ +.| +...++..+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~----------~~g-------------~~~~~~~~e 59 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD----------KYG-------------ITITTNNNE 59 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH----------hcC-------------cEEeCCcHH
Confidence 479999999999999999999885 69999999987765411 122 134455555
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~~ 159 (297)
+++||+||.|++. .....+++++.+.++++++++|...+++++.+.+.++...+++...|..|..+...+. +..+.
T Consensus 60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~ 137 (272)
T PRK12491 60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE 137 (272)
T ss_pred HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence 7899999999984 4466788888888888899999999999999999887656788888887775554443 45667
Q ss_pred CChHHHHHHHHHHHHHhCCeEEE
Q 022407 160 DTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~ 182 (297)
..+++..+.++.+|..+|...+.
T Consensus 138 ~~~~~~~~~v~~lf~~~G~~~~~ 160 (272)
T PRK12491 138 MVTEKDIKEVLNIFNIFGQTEVV 160 (272)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEE
Confidence 77888899999999999997544
No 49
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.70 E-value=5.3e-15 Score=135.32 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=128.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS--------ISSSIQKFVSKGQLSQAMGTDAPRRLRCT 76 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 76 (297)
++||+|||+|.||.++|..|+++||+|++||+++++++.+... +...+.+.++.| ++..+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g------------~l~~~ 70 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG------------YLRAT 70 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC------------ceeee
Confidence 4799999999999999999999999999999999988864311 111111112222 33444
Q ss_pred cCcccccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCC-CCe--E-----
Q 022407 77 SNLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR-PCQ--V----- 138 (297)
Q Consensus 77 ~~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~-~~~--~----- 138 (297)
++ +++||+||.|+|.+. .....+.+.+.+.++++++++ .+|.++.. +++...+.. ... +
T Consensus 71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g 147 (415)
T PRK11064 71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAG 147 (415)
T ss_pred cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCccccccc
Confidence 43 358999999999852 334456677888888877665 44444433 334332211 000 0
Q ss_pred --EEeec-CCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccc-hh---hhHHHHH----HHH
Q 022407 139 --IGMHF-MNPPPLMK---------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDY-AG---FIVNRIL----MPM 198 (297)
Q Consensus 139 --~g~h~-~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~-~g---~i~nri~----~~~ 198 (297)
...++ ++|-.+.+ ..-++.+ .+++.+++++++++.++..++++++. .+ .++++.+ .++
T Consensus 148 ~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 148 EQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred CCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 23322221 1234433 48899999999999999887777652 12 3555554 368
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHh
Q 022407 199 INEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 199 ~~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
+||++.++++.+++++++-.++.
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~ 248 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLAN 248 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhc
Confidence 99999999998899888876654
No 50
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=2.2e-15 Score=131.21 Aligned_cols=191 Identities=13% Similarity=0.155 Sum_probs=130.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
.+||+|||+|.||.+|+..|.++| ++|+++||+++ +++.+. .+.| ++..++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~----------~~~g-------------~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELH----------QKYG-------------VKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHH----------HhcC-------------ceEeCCH
Confidence 369999999999999999999998 79999999764 444431 1112 1344555
Q ss_pred cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc-ceeEec
Q 022407 80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK-LVEVIR 157 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~-~vev~~ 157 (297)
.+ +++||+||.|++.+. ...++.++.+.++++++|++..++++++.+.+.++...++++.+|..|..... +.-+++
T Consensus 60 ~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMKPKD--VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55 689999999998544 44566788777778888888888999988888776556789998876554433 344456
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEeccch-----hh--hHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhh
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQDYA-----GF--IVNRILMPMINEAFF-TLYTGVATKEDIDAGMKL 222 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~-----g~--i~nri~~~~~~Ea~~-l~~~g~~~~~~id~a~~~ 222 (297)
+...+++.++.++++|+.+|...+ +.+.. +. -...+ ...+.|++. ...+.+.+.++...++..
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~-v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV-VEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE-eCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666778999999999999999654 22210 00 00111 233344443 455555777776665543
No 51
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.69 E-value=1.5e-14 Score=125.82 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=107.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.||.++|..|.++|+ +|++||+++++.+.+ .+.|.. ....+.+++.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~-----------~~~g~~------------~~~~~~~~~~ 57 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKA-----------LELGLV------------DEIVSFEELK 57 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH-----------HHCCCC------------cccCCHHHHh
Confidence 379999999999999999999996 788999999876654 333431 1123444555
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-HH-HHhhhcCCCCeEEEeecCCC-----C-CC------
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-IT-RLASATSRPCQVIGMHFMNP-----P-PL------ 149 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p-----~-~~------ 149 (297)
+||+||.|+|.+. ..+++.++.+ ++++++|++.+|+.. +. .+.+. .+.++++.||+.+ | ..
T Consensus 58 ~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~ 132 (275)
T PRK08507 58 KCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE 132 (275)
T ss_pred cCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC
Confidence 6999999998655 4457777877 777887775444322 22 22222 2357999999843 2 11
Q ss_pred CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
...+.+++...++++.++.+.++++.+|.+++++..
T Consensus 133 g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 133 GKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 123456666667889999999999999999998854
No 52
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.69 E-value=2e-16 Score=153.50 Aligned_cols=105 Identities=23% Similarity=0.412 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHH
Q 022407 166 FRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDV 241 (297)
Q Consensus 166 ~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~ 241 (297)
.+.+..++..+++.+..+.+.+|+|+||++.+++||+++++++|+ ++++|||.++..|+|||. |||+++|.+|++.
T Consensus 624 ~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~ 703 (737)
T TIGR02441 624 NSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADK 703 (737)
T ss_pred CHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHH
Confidence 344566777788777655678999999999999999999999999 699999999999999997 9999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHc-C
Q 022407 242 CLSIMKVLHTGLGDSKYAPCPLLVQYVDA-G 271 (297)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 271 (297)
+...++.++..+++ +|+|+++|++|+++ |
T Consensus 704 v~~~~~~l~~~~g~-~~~p~~lL~~~~~~~g 733 (737)
T TIGR02441 704 LVDKMEKYAAAYGV-QFTPCQLLLDHAKSPG 733 (737)
T ss_pred HHHHHHHHHHHhCC-CcCCCHHHHHHHHhcC
Confidence 99999999999996 89999999999986 5
No 53
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.69 E-value=1.5e-15 Score=137.08 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=109.3
Q ss_pred CCcEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-c
Q 022407 4 KMKVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-D 81 (297)
Q Consensus 4 ~~~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 81 (297)
.+++|+||| +|.||.++|..|.++|++|++||+++.. +.+ .
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~-------------------------------------~~~~~ 139 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD-------------------------------------RAEDI 139 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch-------------------------------------hHHHH
Confidence 357999998 9999999999999999999999986310 111 2
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCCCccee--Eec
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLMKLVE--VIR 157 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve--v~~ 157 (297)
+++||+||+|+|++. ...++.++.+ ++++++|+.++|. .++..+.+... .+|+|.||+.+|....+.. ++.
T Consensus 140 ~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~ 214 (374)
T PRK11199 140 LADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVV 214 (374)
T ss_pred HhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEE
Confidence 568999999999876 4677888888 8899999887764 34466666543 3699999999886554322 444
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
.+.++++.++++.++++.+|.++++++.
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~~v~~~~~ 242 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGARLHRISA 242 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence 5567888999999999999999998853
No 54
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.68 E-value=8.4e-15 Score=131.82 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=116.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.... ...+... ...+++++ +++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 47999999999999999999999999999998876443210 1112110 12344444 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCC------------
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPL------------ 149 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~------------ 149 (297)
||+||+|+|.+. ...++.++.+ .++++++|...+|.- ..+.+...+....++++.||+.....
T Consensus 61 aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVDA--TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 999999999753 6688888887 367787776443332 22455554455678999999765421
Q ss_pred CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc-chhhhHHHH
Q 022407 150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD-YAGFIVNRI 194 (297)
Q Consensus 150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d-~~g~i~nri 194 (297)
....-++++..++++.++.+.++++.+|..++++.. ....++..+
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALV 184 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHh
Confidence 112456777778999999999999999999987743 333344433
No 55
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.7e-14 Score=126.11 Aligned_cols=201 Identities=15% Similarity=0.174 Sum_probs=138.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH--------HHHHHHHHcCCCChhhhcccCCceEEec
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS--------SSIQKFVSKGQLSQAMGTDAPRRLRCTS 77 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
.+|+|||+|.+|.++|..++++|++|..+|+++.+++.+..... ..+...++ .++++.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence 78999999999999999999999999999999999887643221 11222233 35578999
Q ss_pred CcccccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEE-eecCCCccH-HHHhhh-------cCCCCeEEE
Q 022407 78 NLKDLHSADIIVEAIVESE--------DVKKKLFSELDKITKASAIL-ASNTSSISI-TRLASA-------TSRPCQVIG 140 (297)
Q Consensus 78 ~~~~~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii-~s~ts~~~~-~~l~~~-------~~~~~~~~g 140 (297)
+.++++.||++|.|||... .......+.|.+.++++.++ .-+|+.+.. +++... +..+..|.-
T Consensus 78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 9999999999999999754 33445556688888777655 455554443 333322 222333322
Q ss_pred eecCCCCCCCcc---------eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccch-h---h----hHHHHHHHHHHHHH
Q 022407 141 MHFMNPPPLMKL---------VEVIRGADTSDETFRATKALAERFGKTVVCSQDYA-G---F----IVNRILMPMINEAF 203 (297)
Q Consensus 141 ~h~~~p~~~~~~---------vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~-g---~----i~nri~~~~~~Ea~ 203 (297)
. +.|-+..+. ..|+.| .+|+..+.+..+++.+-+..+.+.+.. . . +...+..++.||..
T Consensus 158 a--ysPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla 233 (436)
T COG0677 158 A--YSPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA 233 (436)
T ss_pred e--eCccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2 244444431 335555 688999999999999877766665532 1 2 44455579999999
Q ss_pred HHHHcCCCCH-HHHHHHHhh
Q 022407 204 FTLYTGVATK-EDIDAGMKL 222 (297)
Q Consensus 204 ~l~~~g~~~~-~~id~a~~~ 222 (297)
.++++-+++. +-|+.|-++
T Consensus 234 li~~~~GIdvwevIeaAnt~ 253 (436)
T COG0677 234 LICNAMGIDVWEVIEAANTK 253 (436)
T ss_pred HHHHHhCCcHHHHHHHhccC
Confidence 9999877884 557777665
No 56
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.66 E-value=2.2e-14 Score=127.33 Aligned_cols=190 Identities=17% Similarity=0.179 Sum_probs=129.4
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM 65 (297)
Q Consensus 6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
+||.|.|+|+. |.+||.+|+++||+|++||++++.++.. ..+.+.+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~------~~~~l~~~G------ 68 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEE------LWKKVEDAG------ 68 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHH------HHHHHHHCC------
Confidence 47889998863 8889999999999999999998865431 111223334
Q ss_pred hcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH----HHhhhcCCCCeEEE
Q 022407 66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG 140 (297)
Q Consensus 66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g 140 (297)
++++++..+ +++||+||.|+|.... .+.++..+.+.++++++|+ ++|+.++. .+.+.+..+.+.++
T Consensus 69 -------i~~asd~~eaa~~ADvVIlaVP~~~~-v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~g 139 (342)
T PRK12557 69 -------VKVVSDDAEAAKHGEIHILFTPFGKK-TVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVG 139 (342)
T ss_pred -------CEEeCCHHHHHhCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccC
Confidence 245556554 7899999999997653 4567778888888888777 44454543 34455544445667
Q ss_pred eecCCCCCC----CcceeEecCC------CChHHHHHHHHHHHHHhCCeEEEeccchhh---hHHHHHH----HHHHHHH
Q 022407 141 MHFMNPPPL----MKLVEVIRGA------DTSDETFRATKALAERFGKTVVCSQDYAGF---IVNRILM----PMINEAF 203 (297)
Q Consensus 141 ~h~~~p~~~----~~~vev~~~~------~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---i~nri~~----~~~~Ea~ 203 (297)
.++++|..+ ....+++.+. .++++.+++++++++.+|+++++++...+. .+|+++. ....|++
T Consensus 140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777765432 1234555442 348899999999999999999887643332 4555554 3457888
Q ss_pred HHHHcCCCCHHHH
Q 022407 204 FTLYTGVATKEDI 216 (297)
Q Consensus 204 ~l~~~g~~~~~~i 216 (297)
.+.++-+.++.+.
T Consensus 220 ~l~~~~~~~p~~~ 232 (342)
T PRK12557 220 SVGTKIIKAPKEM 232 (342)
T ss_pred HHHHHhCCCHHHH
Confidence 8887766666554
No 57
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.66 E-value=6e-14 Score=123.89 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=112.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.+++|+|||+|.||..+|..|.++|+ +|++||+++++.+.+ .+.|... ...++.++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-----------~~~g~~~-----------~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-----------RELGLGD-----------RVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-----------HhCCCCc-----------eecCCHHH
Confidence 35799999999999999999999995 899999999876654 2233210 12334443
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEeecCCCCCCCc------
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGMHFMNPPPLMK------ 151 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~h~~~p~~~~~------ 151 (297)
+++||+||.|+|... ...++.++.+.++++++|... ++... +.+...++...++++.||+.++...+
T Consensus 63 ~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~ 139 (307)
T PRK07502 63 AVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFA 139 (307)
T ss_pred HhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCH
Confidence 789999999998644 456777787788888776543 33332 34444444455899999987643211
Q ss_pred ------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 152 ------LVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 152 ------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
.+.+++..+++++.++.+.++++.+|.+++++.
T Consensus 140 ~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 140 ELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 134566667889999999999999999998874
No 58
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.65 E-value=1.3e-14 Score=132.73 Aligned_cols=201 Identities=10% Similarity=0.132 Sum_probs=127.2
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSIS----SSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
..+||+|||+|.||.++|..|++ ||+|++||+++++++.+.+... ..++.+.+ ..++.++++.
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~------------~g~l~~t~~~ 71 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELRE------------ARYLKFTSEI 71 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHh------------hCCeeEEeCH
Confidence 45799999999999999999887 6999999999999888632111 01111111 1346677777
Q ss_pred ccccCCcEEEEecccCH------HHH--HHHHHHHHhhccCCeEEe-ecCCCccHH-HH-hhhcCC--C----CeEEEee
Q 022407 80 KDLHSADIIVEAIVESE------DVK--KKLFSELDKITKASAILA-SNTSSISIT-RL-ASATSR--P----CQVIGMH 142 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e~~------~~k--~~~~~~l~~~~~~~~ii~-s~ts~~~~~-~l-~~~~~~--~----~~~~g~h 142 (297)
+.+++||++|.|||++. ++. ....+.|.+.++++.+++ .+|..+..+ ++ ...+.. . ..+.-.
T Consensus 72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~- 150 (425)
T PRK15182 72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVG- 150 (425)
T ss_pred HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEe-
Confidence 77899999999999773 212 222345777777666554 444444332 22 122111 1 111111
Q ss_pred cCCCCCCCc---------ceeEecCCCChHHHHHHHHHHHHHhC-CeEEEeccc-hh---hhHHHHH----HHHHHHHHH
Q 022407 143 FMNPPPLMK---------LVEVIRGADTSDETFRATKALAERFG-KTVVCSQDY-AG---FIVNRIL----MPMINEAFF 204 (297)
Q Consensus 143 ~~~p~~~~~---------~vev~~~~~~~~~~~~~~~~l~~~lG-~~~v~~~d~-~g---~i~nri~----~~~~~Ea~~ 204 (297)
++|..+.+ ...++.| .+++..+.+..+++.+. ..++++.+. .+ .++++++ .+++||++.
T Consensus 151 -~~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~ 227 (425)
T PRK15182 151 -YSPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAI 227 (425)
T ss_pred -eCCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23332221 2235665 45788899999999985 345555542 22 3666665 468999999
Q ss_pred HHHcCCCCHHHHHHHHh
Q 022407 205 TLYTGVATKEDIDAGMK 221 (297)
Q Consensus 205 l~~~g~~~~~~id~a~~ 221 (297)
++++-++|+.++-.++.
T Consensus 228 lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 228 IFNRLNIDTEAVLRAAG 244 (425)
T ss_pred HHHHhCcCHHHHHHHhc
Confidence 99998899888877654
No 59
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2e-14 Score=126.07 Aligned_cols=200 Identities=19% Similarity=0.273 Sum_probs=136.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
|||+|||.|.+|...|.+|++.||+|+.+|+++++++.+.+.. +..++.+++++. ..+|+++++|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~--------~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL--------ASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc--------ccCcEEEEcCHHH
Confidence 5899999999999999999999999999999999999876643 344555555433 2356899999997
Q ss_pred -ccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhc----CCCCeEEEe----
Q 022407 82 -LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI---TRLASAT----SRPCQVIGM---- 141 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~----~~~~~~~g~---- 141 (297)
++++|++|.|++++. .....+.+++.++.+..++++ +-|++|+ +.+.... ..+.--+.+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 899999999998743 345667778888888866555 4566665 2333222 111000111
Q ss_pred --------ecCCCCCCCcceeEecCCCChHHHHHHHHHHHHHh--CCeEEEeccch-h----hhHHHHHH---HHHHHHH
Q 022407 142 --------HFMNPPPLMKLVEVIRGADTSDETFRATKALAERF--GKTVVCSQDYA-G----FIVNRILM---PMINEAF 203 (297)
Q Consensus 142 --------h~~~p~~~~~~vev~~~~~~~~~~~~~~~~l~~~l--G~~~v~~~d~~-g----~i~nri~~---~~~~Ea~ 203 (297)
.|++|.+ ++.|.. ++.+.+.++++++.+ ...|++..+.. . +..|.+++ +++||..
T Consensus 152 LREG~Av~D~~~PdR------IViG~~-~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDR------IVIGVR-SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCe------EEEccC-ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233332 555532 333566666676654 44555544432 2 46666664 6899999
Q ss_pred HHHHcCCCCHHHHHHHHh
Q 022407 204 FTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 204 ~l~~~g~~~~~~id~a~~ 221 (297)
.+++.-+++.++|-.++-
T Consensus 225 ~ice~~g~D~~~V~~gIG 242 (414)
T COG1004 225 NICEKVGADVKQVAEGIG 242 (414)
T ss_pred HHHHHhCCCHHHHHHHcC
Confidence 999998899999887763
No 60
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.64 E-value=1.4e-14 Score=133.60 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=126.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----c
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD----L 82 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~ 82 (297)
+|+|||+|.||.+||.+|+++||+|++||+++++.+.+. +.+.. ...+...+++++ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~-----------~~~~~--------g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-----------AEHAK--------GKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH-----------hhccC--------CCCceecCCHHHHHhhc
Confidence 489999999999999999999999999999999887662 22000 001223444444 3
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCCCCc------cee
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPPLMK------LVE 154 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~~~~------~ve 154 (297)
+.+|+||.|+|.+..+ ..++.++.+.++++.+|+..+++.+. ....+.+. -.|.||++.|-..+ ...
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~----~~gi~fvdapVsGG~~gA~~G~~ 136 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELK----AKGILFVGSGVSGGEEGARKGPS 136 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHH----hcCCEEEcCCCCCCHHHHhcCCc
Confidence 5689999999987665 45667888888777766644443332 23333332 12456665542111 123
Q ss_pred EecCCCChHHHHHHHHHHHHHhCCeE------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHH-cCCCCHHHHHHH
Q 022407 155 VIRGADTSDETFRATKALAERFGKTV------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLY-TGVATKEDIDAG 219 (297)
Q Consensus 155 v~~~~~~~~~~~~~~~~l~~~lG~~~------v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~-~g~~~~~~id~a 219 (297)
++.| ++++++++++++|+.++.++ .++++. .| .++++.+ . ..+.|++.+++ ..+.+++++-.+
T Consensus 137 im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v 214 (467)
T TIGR00873 137 IMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEV 214 (467)
T ss_pred CCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4544 89999999999999999874 677653 33 2455544 2 45789999985 466788888777
Q ss_pred H
Q 022407 220 M 220 (297)
Q Consensus 220 ~ 220 (297)
+
T Consensus 215 ~ 215 (467)
T TIGR00873 215 F 215 (467)
T ss_pred H
Confidence 7
No 61
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.64 E-value=6.5e-14 Score=128.85 Aligned_cols=155 Identities=18% Similarity=0.269 Sum_probs=116.7
Q ss_pred cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
|+|+||| +|.||.++|..|..+|++|++||++++...... .+.|. ..+++.++ +.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a----------~~~gv-------------~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVA----------KELGV-------------EYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHH----------HHcCC-------------eeccCHHHHhc
Confidence 4899997 799999999999999999999999987643321 11221 34445544 78
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCC----CcceeEec
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPL----MKLVEVIR 157 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~----~~~vev~~ 157 (297)
+||+||.|+|.+. ...++.++.+.++++++|++.+|. .+.+.+.+.++...++++.||+..|.. ...+.+++
T Consensus 58 ~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 9999999998643 457788888888889988866653 344666666655578999999865532 22355677
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
+..++++.++.+.++++.+|.+++++..
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~~ 163 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTSP 163 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 7778899999999999999999987743
No 62
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.62 E-value=1.7e-14 Score=128.52 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=126.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh-hhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA-MGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~~ 83 (297)
+||+|||+|.||+.+|..|+++|++|++||++++.++.+.+ .+..... ........+...++.++ ++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINA-----------DRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------cCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 58999999999999999999999999999999988776532 1110000 00001123455666664 78
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCC-----Cc
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL-----MK 151 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~-----~~ 151 (297)
+||+||.|+|.. ....++.++.+.+++++++++.++++.+ +.+.+..+..... .++..|.. .+
T Consensus 71 ~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~---~~~~~P~~~~~~~~g 145 (325)
T PRK00094 71 DADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI---AVLSGPSFAKEVARG 145 (325)
T ss_pred CCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce---EEEECccHHHHHHcC
Confidence 999999999973 3667778888888888887766655554 2223322210011 11222211 11
Q ss_pred --ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh---------------------hHHHH----HHHHHHHHHH
Q 022407 152 --LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVNRI----LMPMINEAFF 204 (297)
Q Consensus 152 --~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---------------------i~nri----~~~~~~Ea~~ 204 (297)
...++. +.+.+.++++.++|+..|..+++..|..|. +.++. ....++|++.
T Consensus 146 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~ 223 (325)
T PRK00094 146 LPTAVVIA--STDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR 223 (325)
T ss_pred CCcEEEEE--eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 112222 357889999999999999888776664431 12222 2356789999
Q ss_pred HHHcCCCCHHHHHHHH
Q 022407 205 TLYTGVATKEDIDAGM 220 (297)
Q Consensus 205 l~~~g~~~~~~id~a~ 220 (297)
+++.-+++++.+....
T Consensus 224 la~~~G~d~~~~~~~~ 239 (325)
T PRK00094 224 LGVALGANPETFLGLA 239 (325)
T ss_pred HHHHhCCChhhhhccc
Confidence 9988777887775543
No 63
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.59 E-value=6.1e-15 Score=143.22 Aligned_cols=86 Identities=33% Similarity=0.562 Sum_probs=81.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022407 186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC 261 (297)
Q Consensus 186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~ 261 (297)
.+|+++||++.+++|||++++++|+ ++++|||.+++.|+|||+ |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus 614 ~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~-~~~p~ 692 (708)
T PRK11154 614 SANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD-RFTPC 692 (708)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC-ccCCC
Confidence 5789999999999999999999998 899999999999999997 999999999999999999999999988 89999
Q ss_pred HHHHHHHHcCC
Q 022407 262 PLLVQYVDAGR 272 (297)
Q Consensus 262 ~~l~~~~~~g~ 272 (297)
++|++|+++|.
T Consensus 693 ~~l~~~~~~~~ 703 (708)
T PRK11154 693 ERLVEMAERGE 703 (708)
T ss_pred HHHHHHHHcCC
Confidence 99999999863
No 64
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.58 E-value=9.1e-13 Score=118.16 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=108.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLS----QAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|||+|.||..+|..|+++||+|++||+++. .+.+ .+.|... ..+......++..+++.+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDEL-----------RAHGLTLTDYRGRDVRVPPSAIAFSTDPAA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHH-----------HhcCceeecCCCcceecccceeEeccChhh
Confidence 5899999999999999999999999999998643 2222 2222110 0011111234555666666
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeecCC----CCCCCc---ce
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMN----PPPLMK---LV 153 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~----p~~~~~---~v 153 (297)
++++|+||.|++... ..++++++.+.++++++|++.++++.. +.+.+.++....+.+.+++. .|.... .-
T Consensus 71 ~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g 148 (341)
T PRK08229 71 LATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSG 148 (341)
T ss_pred ccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCC
Confidence 889999999998654 467788888888888988888888875 55666664333334434321 221100 11
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 154 EVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
++..+. .+.++++.++|+..|.++.+.+|..+
T Consensus 149 ~l~~~~---~~~~~~~~~~l~~~g~~~~~~~di~~ 180 (341)
T PRK08229 149 ALAIEA---SPALRPFAAAFARAGLPLVTHEDMRA 180 (341)
T ss_pred ceEecC---CchHHHHHHHHHhcCCCceecchhHH
Confidence 222221 24568889999999999988888654
No 65
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.58 E-value=1e-14 Score=141.43 Aligned_cols=86 Identities=34% Similarity=0.549 Sum_probs=81.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCc
Q 022407 186 YAGFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPC 261 (297)
Q Consensus 186 ~~g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~ 261 (297)
.+|+++||++.+++|||++++++|+ ++++|||.+++.|+|||. |||+++|.+|++.+...++.++..+++ +|+|+
T Consensus 607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~-~~~p~ 685 (699)
T TIGR02440 607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD-RFTPC 685 (699)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC-CcCCC
Confidence 5789999999999999999999998 899999999999999996 999999999999999999999999987 89999
Q ss_pred HHHHHHHHcCC
Q 022407 262 PLLVQYVDAGR 272 (297)
Q Consensus 262 ~~l~~~~~~g~ 272 (297)
++|.+|+++|.
T Consensus 686 ~~L~~~~~~~~ 696 (699)
T TIGR02440 686 QRLVAMAAEKQ 696 (699)
T ss_pred HHHHHHHHcCC
Confidence 99999998763
No 66
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.57 E-value=2e-13 Score=117.55 Aligned_cols=156 Identities=24% Similarity=0.289 Sum_probs=115.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC--cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN--LK 80 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~ 80 (297)
.++|+|+|+|.||.++|..+..+|+.|.+++++... .+.+ .+.|... ..+.+ ..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-----------~~lgv~d-----------~~~~~~~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-----------LELGVID-----------ELTVAGLAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-----------hhcCccc-----------ccccchhhh
Confidence 468999999999999999999999999777665543 3332 3334321 12223 34
Q ss_pred cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCC-CC-----cc
Q 022407 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPP-LM-----KL 152 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~-~~-----~~ 152 (297)
.+++||+||.|+| ......+++++.+.+++++++...+|.-. ++.+.+..+...++++.||+..|+ .. ..
T Consensus 61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~ 138 (279)
T COG0287 61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV 138 (279)
T ss_pred hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence 4788999999998 44466888999988999999986666543 355655554323899999998772 11 23
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+-++++..++++.++.++.+++.+|.+++++.
T Consensus 139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 55677777889999999999999999998874
No 67
>PLN02256 arogenate dehydrogenase
Probab=99.56 E-value=1.9e-13 Score=119.69 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=111.1
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..++|+|||+|.||.++|..|.+.|++|++||+++.. +.+ .+.|. ...++.++ +
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~~~~~~e~~ 89 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIA-----------AELGV-------------SFFRDPDDFC 89 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHH-----------HHcCC-------------eeeCCHHHHh
Confidence 3479999999999999999999999999999998632 211 12222 23445554 3
Q ss_pred -cCCcEEEEecccCHHHHHHHHHHH-HhhccCCeEEeecCC--CccHHHHhhhcCCCCeEEEeecCCCCCCCcc----ee
Q 022407 83 -HSADIIVEAIVESEDVKKKLFSEL-DKITKASAILASNTS--SISITRLASATSRPCQVIGMHFMNPPPLMKL----VE 154 (297)
Q Consensus 83 -~~aD~Vi~~v~e~~~~k~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~----ve 154 (297)
.++|+||.|+|.. ...+++.++ ...++++++|++.+| +...+.+.+.++...++++.||+.++..... ..
T Consensus 90 ~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~ 167 (304)
T PLN02256 90 EEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLP 167 (304)
T ss_pred hCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCe
Confidence 4699999999854 346677777 466778888887666 4555677777655568999999988864311 11
Q ss_pred E--ec----CCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 155 V--IR----GADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 155 v--~~----~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+ .+ ...++++.++.+.++++.+|.+++.+.
T Consensus 168 ~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 168 FVYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EEEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1 11 145688899999999999999998774
No 68
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.56 E-value=5.9e-13 Score=123.00 Aligned_cols=204 Identities=12% Similarity=0.168 Sum_probs=129.0
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSI----SSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
|+|+|||+|.+|..+|..|+++ |++|+++|+++++++.+++.. +..++.++.++ ...++++++++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~~ 72 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTDV 72 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcCH
Confidence 6899999999999999999988 478999999999988864332 11122221111 12357889988
Q ss_pred cc-ccCCcEEEEecccCH-------------HHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCC---CCeE-E
Q 022407 80 KD-LHSADIIVEAIVESE-------------DVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSR---PCQV-I 139 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~e~~-------------~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~---~~~~-~ 139 (297)
++ +++||++|.|||.+. .-...+.++|.++++++.+|+ .+|..+.. +.+...+.. ...| +
T Consensus 73 ~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v 152 (473)
T PLN02353 73 EKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI 152 (473)
T ss_pred HHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence 75 899999999996443 245567777888888777655 44433333 334332211 1111 1
Q ss_pred EeecCCCCCCCc---------ceeEe-cCC--CChHHHHHHHHHHHHHhCC-eEEEeccch--h---hhHHHH---HHHH
Q 022407 140 GMHFMNPPPLMK---------LVEVI-RGA--DTSDETFRATKALAERFGK-TVVCSQDYA--G---FIVNRI---LMPM 198 (297)
Q Consensus 140 g~h~~~p~~~~~---------~vev~-~~~--~~~~~~~~~~~~l~~~lG~-~~v~~~d~~--g---~i~nri---~~~~ 198 (297)
+ ++|-.+.+ ...|+ .+. ...+++.+.+..++..+-+ .++.+.+.. . ++.|.+ ..++
T Consensus 153 ~---~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf 229 (473)
T PLN02353 153 L---SNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS 229 (473)
T ss_pred E---ECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 23332221 12354 332 1225678889999998753 444443321 1 233333 2588
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHh
Q 022407 199 INEAFFTLYTGVATKEDIDAGMK 221 (297)
Q Consensus 199 ~~Ea~~l~~~g~~~~~~id~a~~ 221 (297)
+||...++++-+++..++-.++.
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~ 252 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVG 252 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhC
Confidence 99999999998899988877765
No 69
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.55 E-value=9.9e-14 Score=123.68 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=121.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.+||+|||+|.||.+||..|+++||+|++|++++++.+.+.+... .+...+ ......++..++++++ ++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~--------~~~~~~--g~~~~~~~~~~~~~~e~~~ 73 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERE--------NREYLP--GVALPAELYPTADPEEALA 73 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCc--------ccccCC--CCcCCCCeEEeCCHHHHHc
Confidence 468999999999999999999999999999999887766532110 010000 0011123556667665 78
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc-----HHHHhhhcCC--CCeEEEeecCCCCCCC------
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS-----ITRLASATSR--PCQVIGMHFMNPPPLM------ 150 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~l~~~~~~--~~~~~g~h~~~p~~~~------ 150 (297)
++|+||+|+|+.. .++++ +.++++.++++.+.++. ...+++.+.. ..++. +...|...
T Consensus 74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~---~~~gP~~a~~~~~~ 144 (328)
T PRK14618 74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA---VLSGPNHAEEIARF 144 (328)
T ss_pred CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE---EEECccHHHHHHcC
Confidence 9999999999764 23343 34456666665566554 3344444321 01111 12222111
Q ss_pred -cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh---------------------hHH----HHHHHHHHHHHH
Q 022407 151 -KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF---------------------IVN----RILMPMINEAFF 204 (297)
Q Consensus 151 -~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~---------------------i~n----ri~~~~~~Ea~~ 204 (297)
+...++.+ ++++.+++++++|+..+.++++..|..|. +.+ .++...++|+..
T Consensus 145 ~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~ 222 (328)
T PRK14618 145 LPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVR 222 (328)
T ss_pred CCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 12333433 68899999999999999888765443321 112 223456789999
Q ss_pred HHHcCCCCHHHHHHHHh
Q 022407 205 TLYTGVATKEDIDAGMK 221 (297)
Q Consensus 205 l~~~g~~~~~~id~a~~ 221 (297)
+++.-+++++.+.....
T Consensus 223 la~~~G~~~~~~~~~~~ 239 (328)
T PRK14618 223 FGVALGAEEATFYGLSG 239 (328)
T ss_pred HHHHhCCCccchhcCcc
Confidence 99887788887766544
No 70
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.55 E-value=1.3e-12 Score=113.46 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=114.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
++|+|||+|.||.+++..|.++| ++|.+|+++.+ +.+.. .... .....+.+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l-----------~~~~-----------~~~~~~~~~~ 59 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQL-----------YDKY-----------PTVELADNEA 59 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHH-----------HHHc-----------CCeEEeCCHH
Confidence 57999999999999999999998 78999998653 22222 1110 0123445555
Q ss_pred c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecC
Q 022407 81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRG 158 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~ 158 (297)
+ ++++|+||.|+|. ....+++.++.+.++++.+|+|.+.+++..++.+.++. .+++.+.|..|..+...+. +..+
T Consensus 60 e~~~~aDvVilavpp--~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~ 136 (277)
T PRK06928 60 EIFTKCDHSFICVPP--LAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHA 136 (277)
T ss_pred HHHhhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecC
Confidence 4 7899999999984 33567888888888788888889999999999988753 4788888877765544443 4455
Q ss_pred CCChHHHHHHHHHHHHHhCCeEEE
Q 022407 159 ADTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 159 ~~~~~~~~~~~~~l~~~lG~~~v~ 182 (297)
...+++..+.++.+|..+|+..++
T Consensus 137 ~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 137 ETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 667888999999999999998765
No 71
>PRK07680 late competence protein ComER; Validated
Probab=99.54 E-value=1.3e-12 Score=113.53 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=107.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|.||..++..|.++|+ +|.+|||++++.+.+. +.. ..+....+..+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~-----------~~~-----------~g~~~~~~~~~ 58 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIK-----------ERY-----------PGIHVAKTIEE 58 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHH-----------HHc-----------CCeEEECCHHH
Confidence 379999999999999999999994 7999999988765541 110 01244555555
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC-CcceeEecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-MKLVEVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-~~~vev~~~~ 159 (297)
+.++|+||.|++... ...+++++.++++++.+|++.+++++.+.+.+.++ .+++..++..|... .+..-++.+.
T Consensus 59 ~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~ 134 (273)
T PRK07680 59 VISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGS 134 (273)
T ss_pred HHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCC
Confidence 789999999997333 56677888888877888888888898888888765 23444444322111 1223344555
Q ss_pred CChHHHHHHHHHHHHHhCCeEEE
Q 022407 160 DTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~ 182 (297)
..+++..+.++++|..+|....+
T Consensus 135 ~~~~~~~~~~~~ll~~~G~~~~i 157 (273)
T PRK07680 135 RCSEEDQQKLERLFSNISTPLVI 157 (273)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEE
Confidence 56778889999999999965444
No 72
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.54 E-value=1.6e-12 Score=110.52 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=120.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+|||+|+||.+|+..|.++| .+|++.++++++.+.+. .+.|. ..+++.++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~----------~~~g~-------------~~~~~~~~ 58 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALA----------AEYGV-------------VTTTDNQE 58 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHH----------HHcCC-------------cccCcHHH
Confidence 68999999999999999999999 68999999999876431 12221 12444444
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce-eEecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV-EVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v-ev~~~~ 159 (297)
+..+|+||.|+. +....+++.++.. ..++.+|+|...+++++.+...++ ..+++...|..|..+...+ -+..+.
T Consensus 59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~ 134 (266)
T COG0345 59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA 134 (266)
T ss_pred HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence 788999999994 5556778888887 678889999999999999999998 6788888888777555444 455667
Q ss_pred CChHHHHHHHHHHHHHhCCeEEEe
Q 022407 160 DTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~~ 183 (297)
..+++..+.+..+|+.+|...++-
T Consensus 135 ~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 135 NVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred cCCHHHHHHHHHHHHhcCCeEEec
Confidence 789999999999999999987764
No 73
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=7.6e-13 Score=113.15 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=113.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL---D-VWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC 75 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
|+. .+||+|||+|.||.+++..|+++|+ + ++++++ ++++.+.+.+ ..+ +..
T Consensus 1 ~m~-~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~-------------~~~ 56 (245)
T PRK07634 1 MLK-KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQA----------RYN-------------VST 56 (245)
T ss_pred CCC-CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHH----------HcC-------------cEE
Confidence 554 3689999999999999999998873 3 677887 4555544311 111 234
Q ss_pred ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-e
Q 022407 76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-V 153 (297)
Q Consensus 76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-v 153 (297)
+++.++ ++++|+||.|+|... ..+++.++.+..+ +.+|+|.+.+++++.+.+.++...+++..||..|..+... .
T Consensus 57 ~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~ 133 (245)
T PRK07634 57 TTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSIS 133 (245)
T ss_pred eCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCe
Confidence 455555 789999999998654 4677788877665 4688889999999999988876567777887655433322 2
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCeEEE
Q 022407 154 EVIRGADTSDETFRATKALAERFGKTVVC 182 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~~v~ 182 (297)
-+......+++..+.++.+|..+|..+++
T Consensus 134 ~~~~~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 134 LYTMGQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 33455667899999999999999999875
No 74
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=1.4e-12 Score=112.45 Aligned_cols=180 Identities=12% Similarity=0.143 Sum_probs=121.5
Q ss_pred EEEEECCChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
+|+|||+|.||.+|+..|.++|++ +.++++++++.+.+. +.. ......++.++ +
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~-----------~~~-----------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLA-----------ERF-----------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHH-----------HHc-----------CCceEeCCHHHHH
Confidence 799999999999999999999865 578999988766542 111 01234556555 6
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcceeEecCCCCh
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVEVIRGADTS 162 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~vev~~~~~~~ 162 (297)
++||+||.|++. .. ...++.++. ..++.++++...+++.+.+.+.++...+++..+|..|......+..+.. .
T Consensus 60 ~~aDvVilav~p-~~-~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~--~- 132 (258)
T PRK06476 60 DRSDVVFLAVRP-QI-AEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP--P- 132 (258)
T ss_pred HhCCEEEEEeCH-HH-HHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC--C-
Confidence 889999999983 32 456666652 4567788888889999999988765556777777765543333333322 1
Q ss_pred HHHHHHHHHHHHHhCCeEEEeccc--h------hhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 022407 163 DETFRATKALAERFGKTVVCSQDY--A------GFIVNRILMPMINEAFFTLYTGVATKEDIDAGM 220 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~v~~~d~--~------g~i~nri~~~~~~Ea~~l~~~g~~~~~~id~a~ 220 (297)
.+.++++|+.+|..+++..+. . +...+ + +.++.++..+.++.+.++++...++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~-~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-Y-FGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-H-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 257899999999988754221 1 12222 2 2466777777777677877655544
No 75
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.51 E-value=1.9e-12 Score=113.65 Aligned_cols=184 Identities=19% Similarity=0.145 Sum_probs=127.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.++|..|..+|++|.+++++.++.... ..+.|. ... +.++ ++.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~----------A~~~G~-------------~~~-s~~eaa~~ 73 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKK----------AEADGF-------------EVL-TVAEAAKW 73 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHH----------HHHCCC-------------eeC-CHHHHHhc
Confidence 689999999999999999999999999998875433221 022231 233 4444 889
Q ss_pred CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC-------CCcce-eE
Q 022407 85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-------LMKLV-EV 155 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-------~~~~v-ev 155 (297)
||+|+.++|.... ..++ +++.+.+++++++ +-.+++++.......+...+++-..|..|.+ ....+ -+
T Consensus 74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 9999999996554 5666 7788888888887 5677888877766555556778777877775 22222 23
Q ss_pred e-cCCCChHHHHHHHHHHHHHhCCeEE-----Eec-cc-h---h--hhHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 022407 156 I-RGADTSDETFRATKALAERFGKTVV-----CSQ-DY-A---G--FIVNRILMPMINEAFFTLYTGVATKEDI 216 (297)
Q Consensus 156 ~-~~~~~~~~~~~~~~~l~~~lG~~~v-----~~~-d~-~---g--~i~nri~~~~~~Ea~~l~~~g~~~~~~i 216 (297)
+ .....+.+..+.+..+++.+|..+. ..+ +. . | .+.-.-+..++..++..+.+.+.+|+..
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3 3444568889999999999998764 112 11 1 1 1333334577888888887766777654
No 76
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.49 E-value=8.2e-13 Score=121.50 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEEecCccc-cc---CCcEEEE
Q 022407 16 MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRCTSNLKD-LH---SADIIVE 90 (297)
Q Consensus 16 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~-~~---~aD~Vi~ 90 (297)
||..||.+|+++||+|.+|||++++.+.+ .+. |. ...++..+++++ ++ .+|+||.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l-----------~~~~g~---------~~g~~~~~s~~e~v~~l~~~~~Ii~ 60 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEF-----------LAEEGK---------GKKIVPAYTLEEFVASLEKPRKILL 60 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHH-----------HHhhCC---------CCCeEeeCCHHHHHhhCCCCCEEEE
Confidence 89999999999999999999999988876 221 21 012356677776 43 4899999
Q ss_pred ecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc------ceeEecCCCCh
Q 022407 91 AIVESEDVKKKLFSELDKITKASAILA-SNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK------LVEVIRGADTS 162 (297)
Q Consensus 91 ~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~------~vev~~~~~~~ 162 (297)
|+|.+..+.. ++..+.+.+.++.||+ .+|+.... ...++.+. -.|.||++.|-..+ ...++.| ++
T Consensus 61 mv~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~----~~Gi~fvdapVSGG~~gA~~G~siM~G--G~ 133 (459)
T PRK09287 61 MVKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELA----EKGIHFIGMGVSGGEEGALHGPSIMPG--GQ 133 (459)
T ss_pred ECCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCeEEecCCCCCHHHHhcCCEEEEe--CC
Confidence 9998877654 5567777777666555 33343332 34444432 13556666552111 1256655 79
Q ss_pred HHHHHHHHHHHHHhCCeE-------EEeccc-hh---hhHHHHH-H---HHHHHHHHHHHc-CCCCHHHHHHHHh
Q 022407 163 DETFRATKALAERFGKTV-------VCSQDY-AG---FIVNRIL-M---PMINEAFFTLYT-GVATKEDIDAGMK 221 (297)
Q Consensus 163 ~~~~~~~~~l~~~lG~~~-------v~~~d~-~g---~i~nri~-~---~~~~Ea~~l~~~-g~~~~~~id~a~~ 221 (297)
++++++++++|+.++.++ .++++. .| .++++.+ + ..+.|++.++++ .+.+++++-.++.
T Consensus 134 ~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 134 KEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999886 788763 33 2455544 3 467899999994 5688888877763
No 77
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.49 E-value=9.3e-12 Score=122.51 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=115.0
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.+++|+|||+|.||.+++..|.++| ++|++||+++++++.+ .+.|... ...++.++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~ 59 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-----------VSLGVID-----------RGEEDLAE 59 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-----------HHCCCCC-----------cccCCHHH
Confidence 3578999999999999999999999 4899999998876654 2333210 12234444
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcC-CCCeEEEeecCCCCCCC-------
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATS-RPCQVIGMHFMNPPPLM------- 150 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~-~~~~~~g~h~~~p~~~~------- 150 (297)
++++|+||+|+|.. ....+++++.++++++++|...++.- ..+.+.+.+. ...|+++.||+..+...
T Consensus 60 ~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~ 137 (735)
T PRK14806 60 AVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANA 137 (735)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhh
Confidence 78999999999864 46788888888888887765433322 2455655543 25689999997644321
Q ss_pred -----cceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 151 -----KLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 151 -----~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
+.+.++++..++++.++.+.++++.+|..++++.+
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~ 177 (735)
T PRK14806 138 DLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMDV 177 (735)
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 23466777778999999999999999998888743
No 78
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.47 E-value=5.6e-13 Score=117.72 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=110.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.+||+|||+|.||++||..|+.+||+|++|+|++. +++++ ++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------------------------------~~~~~~~~ 46 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------------------------------LSLAAVLA 46 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------------------------------CCHHHHHh
Confidence 46899999999999999999999999999999752 12223 56
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCccHH------H-HhhhcCCCCeEEEeecCCCCCC------
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISIT------R-LASATSRPCQVIGMHFMNPPPL------ 149 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~~------~-l~~~~~~~~~~~g~h~~~p~~~------ 149 (297)
++|+||.++|.+ ..+.++..+.++ +++++++++.+.++++. + +...+.. .++.. +..|...
T Consensus 47 ~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~ 121 (308)
T PRK14619 47 DADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQG 121 (308)
T ss_pred cCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcC
Confidence 899999999974 356677888764 67788888777655542 1 1112211 12221 1122110
Q ss_pred CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh-h--------------------hHHHH----HHHHHHHHHH
Q 022407 150 MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG-F--------------------IVNRI----LMPMINEAFF 204 (297)
Q Consensus 150 ~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-~--------------------i~nri----~~~~~~Ea~~ 204 (297)
.+...++. +.+++.++.++++|...+.++++..|..| . +.++. +...++|+..
T Consensus 122 ~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~ 199 (308)
T PRK14619 122 LPAATVVA--SRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR 199 (308)
T ss_pred CCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 01222333 36889999999999999998887766433 1 22222 2345689999
Q ss_pred HHHcCCCCHHHH
Q 022407 205 TLYTGVATKEDI 216 (297)
Q Consensus 205 l~~~g~~~~~~i 216 (297)
+++.-+.+++.+
T Consensus 200 l~~~~G~~~~t~ 211 (308)
T PRK14619 200 VGTHLGAQTETF 211 (308)
T ss_pred HHHHhCCCcccc
Confidence 988866666554
No 79
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.46 E-value=2.9e-11 Score=104.03 Aligned_cols=158 Identities=21% Similarity=0.200 Sum_probs=103.7
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM 65 (297)
Q Consensus 6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
|||.|.|+|+. |++||.+|+++||+|++||+++++.+.. ..+.+.+.|.
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e------~~e~LaeaGA----- 69 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDD------LWKKVEDAGV----- 69 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhh------hhHHHHHCCC-----
Confidence 47889998863 8899999999999999999998765321 0112244453
Q ss_pred hcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhh----cCCC---Ce
Q 022407 66 GTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA----TSRP---CQ 137 (297)
Q Consensus 66 ~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~----~~~~---~~ 137 (297)
..+++..+ +++||+||.|+|++..++. ++..+.+.++++++++ ++||+++..+... +... ..
T Consensus 70 --------~~AaS~aEAAa~ADVVIL~LPd~aaV~e-Vl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~ 139 (341)
T TIGR01724 70 --------KVVSDDKEAAKHGEIHVLFTPFGKGTFS-IARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVG 139 (341)
T ss_pred --------eecCCHHHHHhCCCEEEEecCCHHHHHH-HHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccC
Confidence 34555555 8899999999997776554 4566777778888776 4566666443332 2222 23
Q ss_pred EEEeecCCCCCCCcc-eeEecC------CCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 138 VIGMHFMNPPPLMKL-VEVIRG------ADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 138 ~~g~h~~~p~~~~~~-vev~~~------~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+..+||-.-|..-.- .-++.+ .-.+++.++++..+.+..++.++.+.
T Consensus 140 v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 140 ISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred eeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 444555433321111 112222 22578999999999999999998763
No 80
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.46 E-value=1.3e-11 Score=106.43 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=106.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|||+|.||.+|+..|.++|. +++++|+++++. + +....+..+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~-------------~~~~~~~~~ 53 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P-------------FVYLQSNEE 53 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C-------------eEEeCChHH
Confidence 589999999999999999999873 499999876431 0 123334444
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-eeEecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGA 159 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vev~~~~ 159 (297)
+++||+||.|++ +.....++.++.++.++ .+|+|...+++.+.+...++...+++...|..|...... .-+.++.
T Consensus 54 ~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 54 LAKTCDIIVLAVK--PDLAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANN 130 (260)
T ss_pred HHHhCCEEEEEeC--HHHHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCC
Confidence 678999999986 44466788888877765 466788899999888887765445666666656544333 4455666
Q ss_pred CChHHHHHHHHHHHHHhCCeEEEe
Q 022407 160 DTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~~ 183 (297)
..+++..+.++.+|+.+|...++-
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v~ 154 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEIK 154 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEC
Confidence 678888999999999999987663
No 81
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.45 E-value=2.4e-14 Score=131.21 Aligned_cols=158 Identities=15% Similarity=0.249 Sum_probs=116.4
Q ss_pred cEEEEECCChhHHHHHH--HH----HHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQMGSGIAQ--LG----VMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
.||+|||+|.||.+++. .+ +.+|++|.+||+++++++.....+++.+... + ...+++.++|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~---~---------~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL---G---------APLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEeCCH
Confidence 37999999999998666 23 5568899999999999888766665443321 1 12457778887
Q ss_pred cc-ccCCcEEEEecc----------cCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCC--CCeEEEeecCCC
Q 022407 80 KD-LHSADIIVEAIV----------ESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSR--PCQVIGMHFMNP 146 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~----------e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~--~~~~~g~h~~~p 146 (297)
.+ +++||+||++++ ++..+|..+++++.+.+++++++.+++|...+.++++.+.. | +.+.+||.||
T Consensus 69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP 147 (423)
T cd05297 69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP 147 (423)
T ss_pred HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence 64 899999999998 34678888999999999999999999999988888887753 5 7899999999
Q ss_pred CCCC-----cce--eEecCCCChHHHHHHHHHHHHHhCCe
Q 022407 147 PPLM-----KLV--EVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 147 ~~~~-----~~v--ev~~~~~~~~~~~~~~~~l~~~lG~~ 179 (297)
+..+ +.. .++.. ..........+.+.+|..
T Consensus 148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence 8644 222 23322 212444455566667764
No 82
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.45 E-value=4.2e-13 Score=130.51 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022407 188 GFIVNRILMPMINEAFFTLYTGV-ATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g~-~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 263 (297)
..++||++.+++|||++++++|+ ++++|||.+++.|+|||+ |||+++|.+|++.+..+++.+. .+++ +|+|+++
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~-~~~p~~~ 702 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGP-LYQVPEG 702 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCC-CCCCCHH
Confidence 35899999999999999999996 899999999999999987 9999999999999999999765 5665 8999999
Q ss_pred HHHHHHcCCCCcccCCccc
Q 022407 264 LVQYVDAGRLGKKRGIGVF 282 (297)
Q Consensus 264 l~~~~~~g~~G~~~g~Gfy 282 (297)
|++|+++| ++||
T Consensus 703 L~~~v~~~-------~~f~ 714 (715)
T PRK11730 703 LREMAANG-------ESYY 714 (715)
T ss_pred HHHHHHcC-------CCCC
Confidence 99999876 4686
No 83
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.45 E-value=6e-12 Score=105.72 Aligned_cols=163 Identities=16% Similarity=0.196 Sum_probs=105.9
Q ss_pred cEEEEEC-CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
|||+||| +|.||..+|..|+++|++|+++++++++++...+...+. +...|. ..++...++.+.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~---------~~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS---------DIKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC---------CceEEEeChHHHHhc
Confidence 4799997 899999999999999999999999998876653322111 111111 011223333345889
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-----------------HHHhhhcCCCCeEEEeecCCCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------------TRLASATSRPCQVIGMHFMNPP 147 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~l~~~~~~~~~~~g~h~~~p~ 147 (297)
+|+||.|+|... ...++.++.+.+++ +++++.+.+++. +.+++.++...+++......+.
T Consensus 69 aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998543 45666777666554 677777776654 3456655433566655332221
Q ss_pred CC-------CcceeEecCCCChHHHHHHHHHHHHHh-CCeEEEecc
Q 022407 148 PL-------MKLVEVIRGADTSDETFRATKALAERF-GKTVVCSQD 185 (297)
Q Consensus 148 ~~-------~~~vev~~~~~~~~~~~~~~~~l~~~l-G~~~v~~~d 185 (297)
.. .+....+.| .++++.+.+..+.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~G--dd~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCG--DDEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEEC--CCHHHHHHHHHHHHhcCCCCcccCCc
Confidence 11 112223444 4577889999999999 999998764
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.44 E-value=5.4e-13 Score=129.50 Aligned_cols=83 Identities=30% Similarity=0.478 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHH
Q 022407 188 GFIVNRILMPMINEAFFTLYTG-VATKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPL 263 (297)
Q Consensus 188 g~i~nri~~~~~~Ea~~l~~~g-~~~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 263 (297)
..++||++.+++||+++++++| +++++|||.++..|+|||. |||+++|.+|++.+...++.+. .+++ +|+|+++
T Consensus 625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~-~~~p~~~ 702 (714)
T TIGR02437 625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGA-LYQVTAK 702 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCC-CCCCCHH
Confidence 4699999999999999999999 7789999999999999997 9999999999999999999654 6775 8999999
Q ss_pred HHHHHHcCC
Q 022407 264 LVQYVDAGR 272 (297)
Q Consensus 264 l~~~~~~g~ 272 (297)
|++++++|+
T Consensus 703 l~~~~~~g~ 711 (714)
T TIGR02437 703 LREMAKNGQ 711 (714)
T ss_pred HHHHHHcCC
Confidence 999998763
No 85
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.44 E-value=5.4e-13 Score=101.18 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=76.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWL-VDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
..||+|||+|++|..++..|.++||+|.. |.|+.+..+++... .....+. ++++ +
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~-~~~~~~ 66 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAIL-DLEEIL 66 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT------TTGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------ccccccc-cccccc
Confidence 36999999999999999999999999885 57877666555211 1111233 3444 8
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhh--ccCCeEEeecCCCccHHHHhhhcCCCCeEEEeec
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKI--TKASAILASNTSSISITRLASATSRPCQVIGMHF 143 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~ 143 (297)
.++|++|.++|++. ...+.++|.+. ..++.+++.++.+.+.+.+............+||
T Consensus 67 ~~aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 67 RDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp CC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred ccCCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 89999999999886 66788888876 7788999988888888777776666677778885
No 86
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=5.7e-12 Score=121.23 Aligned_cols=153 Identities=18% Similarity=0.126 Sum_probs=107.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
.++|+|||+|.||..+|..|.+.|++|.+||++... +.+ .+.|. ...++.++ +.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a-----------~~~Gv-------------~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEA-----------QKLGV-------------SYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHH-----------HHcCC-------------eEeCCHHHHHh
Confidence 479999999999999999999999999999998542 222 22232 24455555 44
Q ss_pred -CCcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCC--ccHHHHhhhcCCCCeEEEeecCCCCCCC--c---ce-
Q 022407 84 -SADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSS--ISITRLASATSRPCQVIGMHFMNPPPLM--K---LV- 153 (297)
Q Consensus 84 -~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~l~~~~~~~~~~~g~h~~~p~~~~--~---~v- 153 (297)
.+|+||.|+|.. ....++.++.. .+++++++++.+|+ .+.+.+...++...++++.||+.++... + ..
T Consensus 424 ~~aDvVILavP~~--~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTSIL--STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCChH--HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 589999999953 34566677664 56788888866665 4456666666555679999999887643 1 11
Q ss_pred ----eEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 154 ----EVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 154 ----ev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
-++.+.....+.++.+..++..+|.+++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 1122333455666777899999999988763
No 87
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.42 E-value=8.5e-13 Score=104.97 Aligned_cols=105 Identities=24% Similarity=0.426 Sum_probs=78.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSA 85 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~a 85 (297)
||+|||+|.||.++|..|+.+|++|++|.++++.++.+.+.- ..-...+ ......++.+++|+++ ++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~--------~n~~~~~--~~~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETR--------QNPKYLP--GIKLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT--------SETTTST--TSBEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC--------CCCCCCC--CcccCcccccccCHHHHhCcc
Confidence 799999999999999999999999999999998777653210 0000000 0122356788899876 8999
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
|+||.++|... .+.+++++.++++++.++++.+.++
T Consensus 71 d~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999766 5789999999999999999888877
No 88
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.42 E-value=4.2e-12 Score=110.04 Aligned_cols=165 Identities=22% Similarity=0.342 Sum_probs=115.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.+|+++|..|+++||+|++|.++++.++.+.+. + ...+++. |. .....+.+++|+++ +++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~-~N~~yLp-~i-------~lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-R-ENPKYLP-GI-------LLPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-C-cCccccC-Cc-------cCCcccccccCHHHHHhc
Confidence 689999999999999999999999999999999988776443 1 1111221 11 22356778889887 778
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH------HH-HhhhcCCCCeEEEeecCCCCCCC-------
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI------TR-LASATSRPCQVIGMHFMNPPPLM------- 150 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~------~~-l~~~~~~~~~~~g~h~~~p~~~~------- 150 (297)
||+|+.++|... .+.+.+++...+++++++++.+.++.. ++ +.+.++.. .+. ++..|...
T Consensus 72 ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~-~~~---vLSGPs~A~EVa~g~ 145 (329)
T COG0240 72 ADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDN-PIA---VLSGPSFAKEVAQGL 145 (329)
T ss_pred CCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCC-eEE---EEECccHHHHHhcCC
Confidence 999999998654 678888888888999999988887754 23 33333321 221 22333321
Q ss_pred cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 151 KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 151 ~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
+...++. ..+++..+.+..+|..--.+++...|..|
T Consensus 146 pta~~va--s~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVA--SNDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEe--cCCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 1222333 36888888888888886667777777765
No 89
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=5.5e-12 Score=112.78 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=99.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DL 82 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~ 82 (297)
++|+|||+ |.||.++|..|.+ .|++|+.+|++.+ ...+++ .+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------------------------------~~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------------------------------GSLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------------------------------ccCCHHHHh
Confidence 69999999 9999999999986 4899999998521 112333 37
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhh---ccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCCcc-----
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKI---TKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLMKL----- 152 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~---~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~~~----- 152 (297)
++||+||.|+|... ...+++++.++ ++++++|...+|.- +.+.+ .....+|+|.||+..|...++
T Consensus 50 ~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999998544 56788888776 68898887555433 22333 222357999999988754432
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+-+++. ..++.+++++.+++.+|.+++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 233443 455567889999999999998774
No 90
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.39 E-value=2.6e-12 Score=104.65 Aligned_cols=107 Identities=18% Similarity=0.295 Sum_probs=71.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI--------SSSIQKFVSKGQLSQAMGTDAPRRLRCTS 77 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
|||+|||+|.+|..+|..|+++||+|+.+|.++++++.+.+.. ...+.+..+ ..++++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence 6899999999999999999999999999999999988764321 111221121 35678998
Q ss_pred Cccc-ccCCcEEEEecccCH--------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 78 NLKD-LHSADIIVEAIVESE--------DVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 78 ~~~~-~~~aD~Vi~~v~e~~--------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
+.++ +++||++|.|+|.+. .....+...|.+.++++.+++ .-|++++
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvpp 124 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPP 124 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSST
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEE
Confidence 8887 899999999997643 345667778888888877655 2334443
No 91
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.37 E-value=1.1e-10 Score=102.73 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=109.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||+|.||.++|..|..+|++|+++++. .++.+.+ .+.|. ...+ ..+ ++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a-----------~~~Gv-------------~~~s-~~ea~~ 58 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKA-----------TEDGF-------------KVGT-VEEAIP 58 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHH-----------HHCCC-------------EECC-HHHHHh
Confidence 68999999999999999999999998876654 3333333 22232 2333 444 78
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCC-------Ccce-eE
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPL-------MKLV-EV 155 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~-------~~~v-ev 155 (297)
.||+|+.++|.... ...+.+++.+.++++. ++|-..++++..+...++...+++-..|..|.+. ...+ .+
T Consensus 59 ~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l 136 (314)
T TIGR00465 59 QADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTL 136 (314)
T ss_pred cCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEE
Confidence 99999999996533 4566677888777776 5567788898888777765567888889888863 3333 44
Q ss_pred e-cCCCChHHHHHHHHHHHHHhCCe
Q 022407 156 I-RGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 156 ~-~~~~~~~~~~~~~~~l~~~lG~~ 179 (297)
+ .+...+.+..+.+..+++.+|..
T Consensus 137 ~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 137 IAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCC
Confidence 3 56667888899999999999998
No 92
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.35 E-value=8.7e-10 Score=97.66 Aligned_cols=179 Identities=14% Similarity=0.212 Sum_probs=110.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhcccCCceEEecCc
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-AMGTDAPRRLRCTSNL 79 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~ 79 (297)
|-+..++|+|||+|.||+.+|..|+++|++|+++.|++. +.. .+.|.... ...+.....+...++.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~ 67 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAV-----------RENGLQVDSVHGDFHLPPVQAYRSA 67 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHH-----------HhCCeEEEeCCCCeeecCceEEcch
Confidence 544567999999999999999999999999999999753 222 22231100 0000011113344455
Q ss_pred ccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--
Q 022407 80 KDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM-- 150 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~-- 150 (297)
++...+|+||.|++... ..+++..+.+.+.+++++++...++.. +.+.+.++. .+++ +..++ .|..+.
T Consensus 68 ~~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~ 144 (313)
T PRK06249 68 EDMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHL 144 (313)
T ss_pred hhcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEEC
Confidence 55778999999998554 346778888888888888888888876 456655543 3433 33322 222110
Q ss_pred cceeEecC--CCCh-----HHHHHHHHHHHHHhCCeEEEeccchhhhHHHHH
Q 022407 151 KLVEVIRG--ADTS-----DETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195 (297)
Q Consensus 151 ~~vev~~~--~~~~-----~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~ 195 (297)
..-.+..| .+.+ .+..+.+..+|+..|..+.+..|....++..++
T Consensus 145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 00111111 1122 456677888888889888777777665555554
No 93
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.34 E-value=9.6e-11 Score=104.86 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=110.8
Q ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh--hhhcccCCceEEecCcc
Q 022407 3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ--AMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~i~~~~~~~ 80 (297)
+..+||+|||+|.||+.+|..|+++| +|++|.++++..+.+.+ .+.... .+......++..+++++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~-----------~~~~~~~l~~~~~l~~~i~~t~d~~ 72 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDIND-----------NHRNSRYLGNDVVLSDTLRATTDFA 72 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHh-----------cCCCcccCCCCcccCCCeEEECCHH
Confidence 34579999999999999999999999 78999999988766532 111000 00011123466777776
Q ss_pred c-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCCC--
Q 022407 81 D-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPLM-- 150 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~~-- 150 (297)
+ ++++|+||.++|.. ..+.+++++.+.+++++++++.+.++.. +.+.+.++. .++.. ...|-...
T Consensus 73 ~a~~~aDlVilavps~--~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~--l~GP~~a~ev 147 (341)
T PRK12439 73 EAANCADVVVMGVPSH--GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI--LAGPNIAREV 147 (341)
T ss_pred HHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--EECCCHHHHH
Confidence 5 78999999999843 3677889999988888877777777764 345444432 22211 11221110
Q ss_pred --cc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhh
Q 022407 151 --KL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGF 189 (297)
Q Consensus 151 --~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~ 189 (297)
+. ..++.+. .+++..+.+..+|..-+.+++...|..|.
T Consensus 148 ~~g~~t~~via~-~~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 148 AEGYAAAAVLAM-PDQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred HcCCCeEEEEEe-CCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 11 1222221 36777888888998888888888887663
No 94
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=99.34 E-value=9.4e-12 Score=110.01 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=91.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+||+|||+|.||..+|..++..|+ +|.++|++++.+..- .++..... .......+++.++|+++++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------~ld~~~~~------~~~~~~~~I~~~~d~~~l~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------ALDISHSN------VIAGSNSKVIGTNNYEDIA 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------HHHHHhhh------hccCCCeEEEECCCHHHhC
Confidence 3699999999999999999999996 999999999875321 11111110 0111223566668888899
Q ss_pred CCcEEEEec-------------------ccCHHHHHHHHHHHHhhccCC-eEEeecCCCccHHHHhhhcCCC-CeEEEee
Q 022407 84 SADIIVEAI-------------------VESEDVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH 142 (297)
Q Consensus 84 ~aD~Vi~~v-------------------~e~~~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h 142 (297)
+||+||++. .++..+++++..++.+++++. .+++||++.+....+.+..+.| .|++|++
T Consensus 74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 999999955 446667888889999999774 4566888887777777766654 6788775
No 95
>PLN02712 arogenate dehydrogenase
Probab=99.32 E-value=9.6e-11 Score=112.84 Aligned_cols=153 Identities=18% Similarity=0.151 Sum_probs=104.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L- 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 82 (297)
.++|+|||+|.||..+|..|.++|++|++||++... +.+ .+.|. ...++.++ +
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A-----------~~~Gv-------------~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAA-----------RSLGV-------------SFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHH-----------HHcCC-------------EEeCCHHHHhh
Confidence 368999999999999999999999999999998543 222 22232 23455555 3
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHH-hhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCC-----ccee
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELD-KITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLM-----KLVE 154 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~-~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~-----~~ve 154 (297)
.+||+||.|+|.. ....++.++. +.++++++|+..+|.- ....+...++....+++.||+..|... ....
T Consensus 107 ~~aDvViLavP~~--~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTSII--STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCCHH--HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 5699999999853 3566777775 5677888877554322 224455555555579999998877521 1122
Q ss_pred Eec----C-CCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 155 VIR----G-ADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 155 v~~----~-~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+.. + .....+.++++.++++.+|.+++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 222 1 22234567788899999999998774
No 96
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.32 E-value=9.9e-11 Score=104.32 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=102.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCccc-c-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNLKD-L- 82 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~-~- 82 (297)
|||+|||+|.||..+|..|+++|++|++|+|+++.++...+. ..+.. .+ .......++.+++.++ +
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~--~~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLP--TCHLPDNISVKSAIDEVLS 69 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCC--CCcCCCCeEEeCCHHHHHh
Confidence 379999999999999999999999999999998876655221 00100 00 0011234556666665 4
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHh-hccCCeEEeecCCCccH-------HHHhhhcCCCCeEEEeecCCCCCC-----
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDK-ITKASAILASNTSSISI-------TRLASATSRPCQVIGMHFMNPPPL----- 149 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~-~~~~~~ii~s~ts~~~~-------~~l~~~~~~~~~~~g~h~~~p~~~----- 149 (297)
.++|+||.++|... ...+++++.+ ++++++.+++.++++.. +.+.+.++.. ++.. +..|..
T Consensus 70 ~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~---~~Gp~~a~~~~ 143 (326)
T PRK14620 70 DNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI---LSGPSFAKEIA 143 (326)
T ss_pred CCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe---ecCCcHHHHHH
Confidence 58999999998544 5678888887 77777766666766643 3344444321 2211 112210
Q ss_pred Ccc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHH
Q 022407 150 MKL-VEVIRGADTSDETFRATKALAERFGKTVVCSQDYAGFIVNR 193 (297)
Q Consensus 150 ~~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nr 193 (297)
.+. ..+.. .+.+.+..+++.++|..-+.++....|..|..+..
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k 187 (326)
T PRK14620 144 EKLPCSIVL-AGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGA 187 (326)
T ss_pred cCCCcEEEE-ecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHH
Confidence 011 11111 12344555666666666666777777776653333
No 97
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.31 E-value=1.1e-10 Score=102.99 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=102.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
|||+|||+|.||..+|..|+++|++|+++++ +++++.. .+.|.................++.++ .+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-----------RERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-----------HhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 4799999999999999999999999999999 7666654 22221100000000001122344555 488
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecCC-----CCCCC--cceeE
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFMN-----PPPLM--KLVEV 155 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~~-----p~~~~--~~vev 155 (297)
+|+||.|++... ...++.++.+...++++|++.+.++.. +.+...++.. +++ +..++. |-.+. ..-.+
T Consensus 69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 999999998654 456778888888888888777778765 4555555432 333 333322 21111 01112
Q ss_pred ecC--CCChHHHHHHHHHHHHHhCCeEEEeccchhh
Q 022407 156 IRG--ADTSDETFRATKALAERFGKTVVCSQDYAGF 189 (297)
Q Consensus 156 ~~~--~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~ 189 (297)
..| +....+..+.+..+|...|..+....|....
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~ 181 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQD 181 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHH
Confidence 222 2233456667777888888776666665443
No 98
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=99.31 E-value=8.7e-12 Score=109.71 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=86.5
Q ss_pred EEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCc
Q 022407 8 MGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSAD 86 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD 86 (297)
|+|||+|.||..+|..++..|+ +|+++|++++.++.....+.+. . .......+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~-------~-----~~~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA-------A-----PILGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh-------h-----hhcCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 9999999987543221111111 0 0111224566667777899999
Q ss_pred EEEEec--------------ccCHHHHHHHHHHHHhhccCCeE-EeecCCCccHHHHhhhcCC-CCeEEEe
Q 022407 87 IIVEAI--------------VESEDVKKKLFSELDKITKASAI-LASNTSSISITRLASATSR-PCQVIGM 141 (297)
Q Consensus 87 ~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~l~~~~~~-~~~~~g~ 141 (297)
+||+++ +++..+++++++++.++++++.+ +.+|++.+....+.+..+. +.+++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 56778899999999999987774 5577776666666665543 3466664
No 99
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2.3e-10 Score=93.68 Aligned_cols=188 Identities=19% Similarity=0.242 Sum_probs=126.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc----c
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK----D 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~ 81 (297)
|+|+.||+|.||.-|+.+|.+.||+|+.||+|++..+.+ ...|. +.+++++ .
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~-----------~~~ga-------------~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEEL-----------KDEGA-------------TGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHH-----------HhcCC-------------ccccCHHHHHHh
Confidence 479999999999999999999999999999999988877 44442 2233332 2
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCCCCeEEEeecCCCCCCCc------ce
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSRPCQVIGMHFMNPPPLMK------LV 153 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~~~~~~g~h~~~p~~~~~------~v 153 (297)
+...-.|-.+||-. ++..+++.++.+.+..+-+|+....+.- ...-.+.+ .-.++||++.-.-.+ .-
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l----~~kgi~flD~GTSGG~~G~~~G~ 131 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL----AEKGIHFLDVGTSGGVWGAERGY 131 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH----HhcCCeEEeccCCCCchhhhcCc
Confidence 45567788888854 2367888999988877666654443332 22222222 224678877542111 12
Q ss_pred eEecCCCChHHHHHHHHHHHHHhCCe---EEEecc-chhh----hHHHHH---HHHHHHHHHHHHcCCC--CHHHHHHHH
Q 022407 154 EVIRGADTSDETFRATKALAERFGKT---VVCSQD-YAGF----IVNRIL---MPMINEAFFTLYTGVA--TKEDIDAGM 220 (297)
Q Consensus 154 ev~~~~~~~~~~~~~~~~l~~~lG~~---~v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~g~~--~~~~id~a~ 220 (297)
.++.| +++++++++.++|+.+... ..+++. ..|- +.|-|= .+.+.|.+.++++.-. +-+.+.+.+
T Consensus 132 ~lMiG--G~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 132 CLMIG--GDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred eEEec--CcHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 34544 6999999999999998653 235544 2342 555553 3567899999998643 466777777
Q ss_pred hhcc
Q 022407 221 KLGT 224 (297)
Q Consensus 221 ~~g~ 224 (297)
+.|.
T Consensus 210 ~hGS 213 (300)
T COG1023 210 NHGS 213 (300)
T ss_pred hCcc
Confidence 7654
No 100
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.28 E-value=2.6e-10 Score=100.62 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=100.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
+||+|||+|.||..+|..|+++|++|++++++++..+... +.|... ... ....++...++.++++.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-----------~~g~~~-~~~-~~~~~~~~~~~~~~~~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-----------ENGLRL-EDG-EITVPVLAADDPAELGPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----------HcCCcc-cCC-ceeecccCCCChhHcCCC
Confidence 4799999999999999999999999999999887766542 222110 000 001112234444456889
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeec-----CCCCC---CC-cceeE
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHF-----MNPPP---LM-KLVEV 155 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~-----~~p~~---~~-~~vev 155 (297)
|+||.+++... ...+++.+.+.+.++++|++...++.. +.+.+.++...-+.+..+ ..|-. .. +.+.+
T Consensus 68 d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~i 145 (304)
T PRK06522 68 DLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKI 145 (304)
T ss_pred CEEEEeccccc--HHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEE
Confidence 99999998543 467888888888888777777778765 445554443222222222 11211 01 11112
Q ss_pred ecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 156 IRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
-. ...+.+..+.+.++|...|....+..|..+
T Consensus 146 g~-~~~~~~~~~~l~~~l~~~~~~~~~~~di~~ 177 (304)
T PRK06522 146 GE-PDGESAAAEALADLLNAAGLDVEWSPDIRT 177 (304)
T ss_pred eC-CCCCcHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 11 112223466677778877777666565444
No 101
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.27 E-value=8.8e-11 Score=95.34 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=101.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+|+++|+|+|+||.++|.+|+++||+|++-.++. ++.+.+.+. .+ ..++..+..+.++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~----------l~-----------~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA----------LG-----------PLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh----------hc-----------cccccCChHHHHh
Confidence 3689999999999999999999999999996554 444443211 11 2244555556688
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc----------------H-HHHhhhcCCCCeEE-EeecCC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS----------------I-TRLASATSRPCQVI-GMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~----------------~-~~l~~~~~~~~~~~-g~h~~~ 145 (297)
.||+||.++|-.. ...+.+++..... +.|+++.|..+. . +.+++.++.. +++ .+|-..
T Consensus 60 ~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVPFEA--IPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999998444 5677888887766 667766665421 1 2344555443 332 222221
Q ss_pred CCC------C-CcceeEecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 146 PPP------L-MKLVEVIRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 146 p~~------~-~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
+.. . .+..-.+.| .+.++.+.+..+.+.+|..++-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEec--CcHHHHHHHHHHHHhcCcceeeccc
Confidence 111 1 122223444 6888999999999999999998765
No 102
>PTZ00117 malate dehydrogenase; Provisional
Probab=99.27 E-value=2.3e-11 Score=107.65 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=90.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
.+||+|||+|.||..+|..++..| .+|.++|++++.++...-...+. . .......+++.++++++++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----------~--~~~~~~~~i~~~~d~~~l~ 72 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----------S--TLVGSNINILGTNNYEDIK 72 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----------c--cccCCCeEEEeCCCHHHhC
Confidence 369999999999999999999989 69999999987654221111110 0 0011123556667888899
Q ss_pred CCcEEEEec--ccCH------------HHHHHHHHHHHhhccCC-eEEeecCCCccHHHHhhhcCCC-CeEEEee
Q 022407 84 SADIIVEAI--VESE------------DVKKKLFSELDKITKAS-AILASNTSSISITRLASATSRP-CQVIGMH 142 (297)
Q Consensus 84 ~aD~Vi~~v--~e~~------------~~k~~~~~~l~~~~~~~-~ii~s~ts~~~~~~l~~~~~~~-~~~~g~h 142 (297)
+||+||++. ++.. .+++++..++.+++++. .+++||++.+....+.+....| .+++|++
T Consensus 73 ~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 73 DSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 999999998 6655 67888889999998777 4556787777666666655554 6777765
No 103
>PRK06223 malate dehydrogenase; Reviewed
Probab=99.26 E-value=3.8e-11 Score=106.12 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=82.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
++||+|||+|.||..+|..++..|+ +|.++|+++++++.....+.+.. . ......+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 99999998887543221111110 0 011124566667777799
Q ss_pred CCcEEEEec--------------ccCHHHHHHHHHHHHhhccCCeE-EeecCCCccHHHHhhhcCC-CCeEEEe
Q 022407 84 SADIIVEAI--------------VESEDVKKKLFSELDKITKASAI-LASNTSSISITRLASATSR-PCQVIGM 141 (297)
Q Consensus 84 ~aD~Vi~~v--------------~e~~~~k~~~~~~l~~~~~~~~i-i~s~ts~~~~~~l~~~~~~-~~~~~g~ 141 (297)
+||+||+++ .++..++++++.++.+.+++..+ +.+|.+.+-...+.+..+. +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 24556788888999998866533 3455544433334333222 2455554
No 104
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.25 E-value=4.4e-11 Score=86.99 Aligned_cols=89 Identities=22% Similarity=0.424 Sum_probs=65.7
Q ss_pred EEEEECCChhHHHHHHHHHHCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Cccc
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDG---LDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKD 81 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~ 81 (297)
||+|||+|.||.+|+..|.++| ++|.++ ++++++++++.+. .+ +.+.. +..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-------------~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-------------VQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-------------TEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-------------cccccCChHH
Confidence 7999999999999999999999 999955 9999988776221 11 12333 4444
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
++.+|+||.|+|... ..+++.++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeCC
Confidence 789999999997544 56788888 55667777776553
No 105
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.25 E-value=3.7e-10 Score=97.14 Aligned_cols=140 Identities=24% Similarity=0.313 Sum_probs=100.3
Q ss_pred HHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCCcEEEEecccCHH
Q 022407 20 IAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSADIIVEAIVESED 97 (297)
Q Consensus 20 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~e~~~ 97 (297)
+|..|.++| ++|+.+|++++.++.+ .+.|... ...++.+.+++||+||.|+|-+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~-----------~~~~~~~~~~~~DlvvlavP~~~- 57 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIID-----------EASTDIEAVEDADLVVLAVPVSA- 57 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSS-----------EEESHHHHGGCCSEEEE-S-HHH-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCee-----------eccCCHhHhcCCCEEEEcCCHHH-
Confidence 578889999 7899999999988776 5666543 23333556899999999998544
Q ss_pred HHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCCCeEEEeecCCCCCCC------------cceeEecCCCChH
Q 022407 98 VKKKLFSELDKITKASAILASNTSSI--SITRLASATSRPCQVIGMHFMNPPPLM------------KLVEVIRGADTSD 163 (297)
Q Consensus 98 ~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~~~~~g~h~~~p~~~~------------~~vev~~~~~~~~ 163 (297)
...++.++.++++++++|...+|.- ....+.+.++...++++.||+..|... ..+-++++..+++
T Consensus 58 -~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 58 -IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp -HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred -HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 6788999999999999887555532 335666666656799999999877321 2366778888889
Q ss_pred HHHHHHHHHHHHhCCeEEEe
Q 022407 164 ETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~ 183 (297)
+.++.+..+++.+|.+++.+
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEM 156 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEc
Confidence 99999999999999998876
No 106
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.23 E-value=7.5e-09 Score=90.99 Aligned_cols=167 Identities=15% Similarity=0.124 Sum_probs=108.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
|||+|+|+|.||+.++..|+++|++|+++.|++. +++. .+.|..-...............+.+....+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l-----------~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEAL-----------KKKGLRIEDEGGNFTTPVVAATDAEALGPA 68 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHH-----------HhCCeEEecCCCccccccccccChhhcCCC
Confidence 5899999999999999999999999999988875 5554 334432111111111122233444457799
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH-HhhhcCCCCeEEEeecCCCCCCCcc---------eeE
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR-LASATSRPCQVIGMHFMNPPPLMKL---------VEV 155 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~-l~~~~~~~~~~~g~h~~~p~~~~~~---------vev 155 (297)
|+||.++-. ....++++.+.+.++++++|++...++...+ +....+....+.|+-+.......+. ..+
T Consensus 69 Dlviv~vKa--~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i 146 (307)
T COG1893 69 DLVIVTVKA--YQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI 146 (307)
T ss_pred CEEEEEecc--ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence 999999843 3366888999999999998888888988754 5555444323445544433222111 112
Q ss_pred ecCCCChHHHHHHHHHHHHHhCCeEEEeccc
Q 022407 156 IRGADTSDETFRATKALAERFGKTVVCSQDY 186 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~ 186 (297)
-...+..++.++.+.+.|+..|....+..|.
T Consensus 147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~di 177 (307)
T COG1893 147 GELRGGRDELVKALAELFKEAGLEVELHPDI 177 (307)
T ss_pred ccCCCCchHHHHHHHHHHHhCCCCeEEcHHH
Confidence 2223334577888888888888877766554
No 107
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.20 E-value=7.9e-10 Score=98.32 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=103.8
Q ss_pred EEEEECCChhHHHHHHHHHHCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCce
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDG--------LDVWLVDT-----DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRL 73 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 73 (297)
||+|||+|.+|.++|..|+.+| ++|++|.+ +++..+.. ++. .+.-...+ . -....++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~i----n~~----~~n~~ylp-g-i~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEII----NTT----HENVKYLP-G-IKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHH----Hhc----CCCccccC-C-CcCCCCe
Confidence 5999999999999999999999 99999998 33332222 111 00000000 0 0123567
Q ss_pred EEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH---------HHhhhcCCCCeEEEeec
Q 022407 74 RCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT---------RLASATSRPCQVIGMHF 143 (297)
Q Consensus 74 ~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~---------~l~~~~~~~~~~~g~h~ 143 (297)
++++|+++ +++||+||.++|... .+.++.++.++++++.++++.+.++..+ .+.+.+.. ++. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeE---E
Confidence 78888876 799999999998655 6678899998888888888888777543 23333322 221 1
Q ss_pred CCCCCCC-------cceeEecCCCCh----HHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 144 MNPPPLM-------KLVEVIRGADTS----DETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 144 ~~p~~~~-------~~vev~~~~~~~----~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
+..|... +...++.+ .+ .+..+.++.+|..=-.+++...|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~--~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGY--RDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEe--CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 2233221 11223333 34 77788888888765556666677665
No 108
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.17 E-value=1.4e-09 Score=97.50 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=105.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHc-CCCChhhhcccCCceEE
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG-------LDVWLVDTDPDA-LVRATKSISSSIQKFVSK-GQLSQAMGTDAPRRLRC 75 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~ 75 (297)
.+||+|||+|.||+++|..|+.+| ++|.+|.++++. -+...+.+++. .+. ..+.. -....++..
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~----~~N~~ylp~---~~Lp~ni~~ 83 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK----HENVKYLPG---IKLPDNIVA 83 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc----CCCcccCCC---CcCCCceEE
Confidence 469999999999999999999998 899999998762 11111111111 000 00100 123467788
Q ss_pred ecCccc-ccCCcEEEEecccCHHHHHHHHHHHHh--hccCCeEEeecCCCccH--------H-HHhhhcCCCCeEEEeec
Q 022407 76 TSNLKD-LHSADIIVEAIVESEDVKKKLFSELDK--ITKASAILASNTSSISI--------T-RLASATSRPCQVIGMHF 143 (297)
Q Consensus 76 ~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~--~~~~~~ii~s~ts~~~~--------~-~l~~~~~~~~~~~g~h~ 143 (297)
++|+++ +++||+||.++|... .++++.++.+ ..+++++++|.+.++.. + .+.+.++. ++. .
T Consensus 84 tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~---~ 156 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCC---A 156 (365)
T ss_pred ecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeE---E
Confidence 888876 899999999998544 7788888887 77777778877766653 2 23333332 221 1
Q ss_pred CCCCCCC-------cceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 144 MNPPPLM-------KLVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 144 ~~p~~~~-------~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
+..|... +...++.+ .+++..+.+..+|..=-.+++...|..|
T Consensus 157 LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 157 LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 2223211 11222332 4778888888888765666777777655
No 109
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=4.1e-09 Score=92.42 Aligned_cols=194 Identities=17% Similarity=0.207 Sum_probs=129.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc----
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD---- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 81 (297)
..||+||+|.||+-+|.+.+.+||.|.+|+|+.++.+...+ +.+ ...+|..+.++++
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~----------~~~---------~~k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA----------ERA---------KGKNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH----------hCc---------cCCCccccCcHHHHHHH
Confidence 57999999999999999999999999999999999887632 111 1123455566654
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cH-HHHhhhcCCCCeEEEeecCCCCCC-CcceeEec
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SI-TRLASATSRPCQVIGMHFMNPPPL-MKLVEVIR 157 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~-~~l~~~~~~~~~~~g~h~~~p~~~-~~~vev~~ 157 (297)
++..--|+.+|.-. .....++++|.+++.++-||+....+. +. +...+.....-.|+|+-.-....- .....+|+
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMp 143 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMP 143 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCC
Confidence 45677788887543 224577888889888877776444333 33 222222233456777654322110 11244777
Q ss_pred CCCChHHHHHHHHHHHHHhCCeE------EEec-cchhh----hHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHh
Q 022407 158 GADTSDETFRATKALAERFGKTV------VCSQ-DYAGF----IVNRIL---MPMINEAFFTLYTG-VATKEDIDAGMK 221 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~------v~~~-d~~g~----i~nri~---~~~~~Ea~~l~~~g-~~~~~~id~a~~ 221 (297)
| +++++++.+.++|..+..+. .+++ +..|. +.|-|= ..++.|+..++.++ ..|.++|-..+.
T Consensus 144 G--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 144 G--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred C--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 6 89999999999999885432 2343 34452 445443 36899999999884 467888877765
No 110
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.12 E-value=2.9e-09 Score=93.91 Aligned_cols=178 Identities=13% Similarity=0.018 Sum_probs=107.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
+||+|+|+|.||+-+|..|+++|++|++++|+.+.++..++ +.|...........-++. ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~----------~~Gl~i~~~g~~~~~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ----------AGGLTLVEQGQASLYAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh----------cCCeEEeeCCcceeeccC-CCCccccccc
Confidence 68999999999999999999999999999998877766521 112110000000000111 1112235678
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEEEeecCCCCCCCc-------ceeEec
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVIGMHFMNPPPLMK-------LVEVIR 157 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~g~h~~~p~~~~~-------~vev~~ 157 (297)
|+||.|+-.. -....++.+.+++.+++++++...++.. +.+.+.++...-+.+..++..-...+ .-.+..
T Consensus 72 D~viv~vK~~--~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~ 149 (305)
T PRK05708 72 HRLLLACKAY--DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWL 149 (305)
T ss_pred CEEEEECCHH--hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEE
Confidence 9999999532 2446778888999999988888889887 45666654332233333332211111 111223
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHH
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMP 197 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~ 197 (297)
|...+ +..+.+.++|..-|....+..|..+.+++.+++.
T Consensus 150 G~~~~-~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N 188 (305)
T PRK05708 150 GDPRN-PTAPAWLDDLREAGIPHEWTVDILTRLWRKLALN 188 (305)
T ss_pred cCCCC-cchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH
Confidence 32222 3345666777777777767777777766666543
No 111
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.12 E-value=4e-10 Score=99.07 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=76.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+||+|||+|.||..+|..++..|+ +|+++|++++..+ ... ++. .+.+. ......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~-g~a-----~d~-~~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQ-GKA-----LDM-YEASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhH-HHH-----Hhh-hhhhh-----ccCCCcEEEecCCHHHhCC
Confidence 589999999999999999999887 8999999766432 211 010 11111 1112356777888888999
Q ss_pred CcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCC-CCeEEEe
Q 022407 85 ADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSR-PCQVIGM 141 (297)
Q Consensus 85 aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~-~~~~~g~ 141 (297)
||+||.++.. +....+.+..++.++.+ +.+++.-|...++ ..+.+..+. +.|++|+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~ 142 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ 142 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence 9999999862 23445556666777764 4444433443333 333333222 2455554
No 112
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.11 E-value=2.1e-08 Score=83.01 Aligned_cols=158 Identities=20% Similarity=0.213 Sum_probs=108.4
Q ss_pred cEEEEECCChh--------------------HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 022407 6 KVMGVVGSGQM--------------------GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAM 65 (297)
Q Consensus 6 ~~V~iiG~G~m--------------------G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 65 (297)
+||+|.|+|+. |+.||..|+.+||+|.+.|+|.+-.+.. .+++..+.|.
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~------~w~~vedAGV----- 70 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDE------HWKRVEDAGV----- 70 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHH------HHHHHHhcCc-----
Confidence 68999999863 7889999999999999999988755432 2334344453
Q ss_pred hcccCCceEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHH----HHhhhcCCCCeEEE
Q 022407 66 GTDAPRRLRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISIT----RLASATSRPCQVIG 140 (297)
Q Consensus 66 ~~~~~~~i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~----~l~~~~~~~~~~~g 140 (297)
+.+ +|.+.++.+++.+.-.|=... .-.+.++|.++++++++|+ ||.+.++- .+...+..+.+-+|
T Consensus 71 --------~vv~dD~eaa~~~Ei~VLFTPFGk~-T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVG 140 (340)
T COG4007 71 --------EVVSDDAEAAEHGEIHVLFTPFGKA-TFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVG 140 (340)
T ss_pred --------EEecCchhhhhcceEEEEecccchh-hHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcC
Confidence 444 455568999999988775432 4467788999999999987 55555543 44455554444556
Q ss_pred eecCCCCCCCc----ceeEecCC------CChHHHHHHHHHHHHHhCCeEEEec
Q 022407 141 MHFMNPPPLMK----LVEVIRGA------DTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 141 ~h~~~p~~~~~----~vev~~~~------~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
...+.|..+-+ ..-++.+. -.+++-++++..+.+..|+.++++.
T Consensus 141 vssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 141 VSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecC
Confidence 65555543211 12233321 1367889999999999999998764
No 113
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.02 E-value=6.9e-09 Score=92.21 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=82.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..|...|++|.+||++++..... +...+++++ +++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~ 198 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence 589999999999999999999999999999987532110 013345665 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+..+.+++.+.++++++++..+.+.-+ ..+.+.+... -...++.-|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 99999999998877777777777888999988855544433 5677776532 2334444443
No 114
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.98 E-value=2.9e-09 Score=91.96 Aligned_cols=96 Identities=17% Similarity=0.326 Sum_probs=73.5
Q ss_pred EEEECC-ChhHHHHHHHHHHCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-cc
Q 022407 8 MGVVGS-GQMGSGIAQLGVMDG----LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-KD 81 (297)
Q Consensus 8 V~iiG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 81 (297)
|+|||+ |.||..+|..|+..| .+|.++|+++++++.....+++..... ...+++.++|. ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655544432211 12356667774 56
Q ss_pred ccCCcEEEE--------------ecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 82 LHSADIIVE--------------AIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 ~~~aD~Vi~--------------~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+++||+||+ .+.++..+++++..++.++++ +++++
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i 116 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWII 116 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence 999999999 555666788999999999985 44444
No 115
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.97 E-value=4.5e-10 Score=97.62 Aligned_cols=77 Identities=30% Similarity=0.538 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCc---cHHHHHHhhchHHHHHHHHHHHhhcCCCCCCCcHHH
Q 022407 189 FIVNRILMPMINEAFFTLYTGVA-TKEDIDAGMKLGTNQPM---GPLQLADFIGLDVCLSIMKVLHTGLGDSKYAPCPLL 264 (297)
Q Consensus 189 ~i~nri~~~~~~Ea~~l~~~g~~-~~~~id~a~~~g~g~~~---Gp~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l 264 (297)
.++++++.+++|||+++++||+. ++.++|.+...|+|||. |||+|.|.+|++.+++.|+.|.. |.|+.+|
T Consensus 295 d~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~------f~P~~~l 368 (380)
T KOG1683|consen 295 DFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS------FEPCQLL 368 (380)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc------CCHHHHH
Confidence 58999999999999999999987 49999999999999996 99999999999999999999875 8999999
Q ss_pred HHHHHcC
Q 022407 265 VQYVDAG 271 (297)
Q Consensus 265 ~~~~~~g 271 (297)
..+..+|
T Consensus 369 ~~~a~~~ 375 (380)
T KOG1683|consen 369 KDHAKSG 375 (380)
T ss_pred HHHHhhh
Confidence 9988874
No 116
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.93 E-value=8e-08 Score=83.63 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=88.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||.++|.+|...|++|+++++.....+.+ .+.|. .+. ++++ ++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-----------~~~G~-------------~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-----------KADGF-------------EVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-----------HHcCC-------------EEC-CHHHHHhc
Confidence 689999999999999999999999999998764332222 22232 233 5555 889
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhc-CCCCeEEEeecCCCCCCC-----------cc
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT-SRPCQVIGMHFMNPPPLM-----------KL 152 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~-~~~~~~~g~h~~~p~~~~-----------~~ 152 (297)
||+|+.++|++.+ +..+..++.+.+++++++..+. +..+..- ... +....++=..|=.|-+.. .+
T Consensus 72 ADVV~llLPd~~t-~~V~~~eil~~MK~GaiL~f~h-gfni~~~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l 148 (335)
T PRK13403 72 AQVVQMLLPDEQQ-AHVYKAEVEENLREGQMLLFSH-GFNIHFG-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPAL 148 (335)
T ss_pred CCEEEEeCCChHH-HHHHHHHHHhcCCCCCEEEECC-CcceecC-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeE
Confidence 9999999997443 4333356888888888776433 3333110 011 111223323333332211 12
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeE
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTV 180 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~ 180 (297)
+-|-.. .+-.+.+.+..+.+.+|...
T Consensus 149 ~av~qd--~sg~a~~~ala~a~~iG~~r 174 (335)
T PRK13403 149 VAVHQD--ATGTALHVALAYAKGVGCTR 174 (335)
T ss_pred EEEEEC--CCCcHHHHHHHHHHHcCCCc
Confidence 333333 34447888888999998763
No 117
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.90 E-value=2.5e-07 Score=78.96 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=96.7
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHH
Q 022407 29 LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELD 107 (297)
Q Consensus 29 ~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~ 107 (297)
++|.+++|++++++.+.+ +.| +...++..+ +++||+||.|++ +.....++.++.
T Consensus 10 ~~I~v~~R~~e~~~~l~~----------~~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~ 64 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAK----------ELG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK 64 (245)
T ss_pred CeEEEEcCCHHHHHHHHH----------HcC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence 689999999888665411 112 234555555 688999999998 334567788888
Q ss_pred hhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc-eeEecCCCChHHHHHHHHHHHHHhCCeEEEe
Q 022407 108 KITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL-VEVIRGADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 108 ~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~-vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~ 183 (297)
+.+.++.+|+|...+++++++.+.++...+++.+.|..|...... .-+..+...+++..+.++.+|..+|...++-
T Consensus 65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~ 141 (245)
T TIGR00112 65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELP 141 (245)
T ss_pred hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 767778899999999999999988865557887777766544433 4455666778888999999999999877653
No 118
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.88 E-value=5.8e-08 Score=79.57 Aligned_cols=115 Identities=13% Similarity=0.202 Sum_probs=78.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
+||+|||. |.||+.++..|.++||+|++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~ 31 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KK 31 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CC
Confidence 48999999 99999999999999999861 36
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc--c--eeEecCCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--L--VEVIRGAD 160 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~--vev~~~~~ 160 (297)
||+||.|+|.+. ..++++++. .+++..+| .-. .+.+. ..+++|.||+..|.... + .-++..+.
T Consensus 32 ~DlVilavPv~~--~~~~i~~~~------~~v~Dv~S-vK~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~~~~ 98 (197)
T PRK06444 32 ADHAFLSVPIDA--ALNYIESYD------NNFVEISS-VKW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFINDI 98 (197)
T ss_pred CCEEEEeCCHHH--HHHHHHHhC------CeEEeccc-cCH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEECCC
Confidence 999999999654 334555443 24443333 222 12222 34799999988764321 1 22233566
Q ss_pred ChHHHHHHHHHHHHHhCCeEEEec
Q 022407 161 TSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 161 ~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
++++.++.++++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 78888899999988 77777653
No 119
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.86 E-value=4.5e-08 Score=76.23 Aligned_cols=106 Identities=23% Similarity=0.374 Sum_probs=68.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
+||+|||+ |.+|..+|..|...++ ++.++|+++++++.....+++...... .... ....+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~------------~~~~-i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP------------SPVR-ITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST------------EEEE-EEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc------------cccc-ccccccccc
Confidence 58999999 9999999999998875 899999999876665444443321110 0011 234667789
Q ss_pred cCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 83 HSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 83 ~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
++||+||.+.-. . ..+.+++..++.++.+ +.+++..|..+.+
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvtNPvd~ 123 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVTNPVDV 123 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-SSSHHH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeCCcHHH
Confidence 999999987622 1 1234445556777774 4444434544443
No 120
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.84 E-value=2.5e-08 Score=77.87 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=61.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|+|||.|..|.+.|.+|..+|++|++-.+..+ ..+++ .+.|. .+.+..+.++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-----------~~~Gf-------------~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-----------KADGF-------------EVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-----------HHTT--------------ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-----------HHCCC-------------eeccHHHHHhh
Confidence 6899999999999999999999999999998776 33433 45553 33333344899
Q ss_pred CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeec
Q 022407 85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASN 119 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ 119 (297)
||+|+..+|+.. ..+++ +++.+.++++.++...
T Consensus 61 aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 61 ADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp -SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEES
T ss_pred CCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEeC
Confidence 999999999655 45666 7799999999887743
No 121
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.84 E-value=2.1e-08 Score=79.12 Aligned_cols=114 Identities=21% Similarity=0.252 Sum_probs=77.2
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCc-ccccCC
Q 022407 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNL-KDLHSA 85 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~-~~~~~a 85 (297)
|+|+|+|.||+.+|..|+++|++|+++++++ .++.. .+.|.. .....+..........+. .....+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-----------KEQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-----------HHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-----------hheeEEEEecccceecccccccCcchhccCCC
Confidence 7899999999999999999999999999998 66654 333321 111101111111112222 246789
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCC
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRP 135 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~ 135 (297)
|+||.|+.... ...++..+.+++.+++.|++...++.. +.+.+.++.+
T Consensus 69 D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~ 117 (151)
T PF02558_consen 69 DLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP 117 (151)
T ss_dssp SEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS
T ss_pred cEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC
Confidence 99999996433 456788899999999888888888886 5566665443
No 122
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.83 E-value=8.5e-08 Score=85.46 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=74.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..+...|.+|.+||+++.... . .+.+. .. .++++ ++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-----------~~~~~-------------~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-----------KELGA-------------EY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-----------HHcCC-------------Ee-cCHHHHHhh
Confidence 6999999999999999999999999999999865321 1 11111 22 35555 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSR 134 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~ 134 (297)
||+|+.++|...+.+.-+-++.-+.++++++++..+.+- ....+.+.+..
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 999999999888766655566777788898887333332 22567776643
No 123
>PRK07574 formate dehydrogenase; Provisional
Probab=98.80 E-value=1.4e-07 Score=85.20 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=78.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||+.+|..|...|.+|..||++....+.. .+.| ++...++++ ++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-----------QELG-------------LTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-----------hhcC-------------ceecCCHHHHhhc
Confidence 689999999999999999999999999999976322111 1111 233456666 799
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc---HHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-++.-..++++++++ |++.-. ...+.+.+... -.-.++.-|.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~ 312 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-NTARGKIVDRDAVVRALESGHLAGYAGDVWF 312 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-ECCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence 999999999888765544455667788898887 444322 25676666432 2334444443
No 124
>PLN03139 formate dehydrogenase; Provisional
Probab=98.79 E-value=2.1e-07 Score=84.04 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=80.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..|...|.+|..||++....+.. .+.| +...+++++ ++.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-----------KETG-------------AKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-----------hhcC-------------ceecCCHHHHHhh
Confidence 689999999999999999999999999999875322211 1112 134456776 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc---HHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS---ITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-+++-+.++++++++ |++.-. -+.+.+.+... -...++.-|.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~ 319 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV-NNARGAIMDTQAVADACSSGHIGGYGGDVWY 319 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence 999999999888866655566777888898887 444322 25677776432 2334555444
No 125
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.78 E-value=3.5e-08 Score=87.11 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=67.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|+.+|..|+..| ++|.++|+++++++.....+.+..... +. ...+ ...++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~---------~~~i-~~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS---------PVKI-KAGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC---------CeEE-EcCCHHHhC
Confidence 48999999999999999999999 689999999988766644443331100 00 0112 235566789
Q ss_pred CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+||+||.+.... ..+.+.+...+.++.+ +++++.-|.
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsN 118 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASN 118 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecC
Confidence 999999987431 1234455566777776 444443333
No 126
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.76 E-value=8.6e-08 Score=84.05 Aligned_cols=110 Identities=12% Similarity=0.192 Sum_probs=75.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||+.+|..+...|++|..||++... .+. . ....++++ ++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~----------~--~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI----------S--SIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc----------c--cccCCHHHHHhh
Confidence 78999999999999999888789999999987321 010 0 11235666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc---cHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI---SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-.+.-..++++++++ |++.- ....+.+.+... ....++..|.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~ 237 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAII-NVARADVVDKNDMLNFLRNHNDKYYLSDVWW 237 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCceEEEEccCC
Confidence 999999999888765545455666678888887 44432 235677766532 3344444443
No 127
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.71 E-value=1e-07 Score=84.29 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=57.0
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
|++.-+||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+++....+ ....+. .++
T Consensus 2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-------------~~~~i~-~~~ 67 (315)
T PRK00066 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-------------SPTKIY-AGD 67 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-------------CCeEEE-eCC
Confidence 34555799999999999999999999988 89999999887766544444332100 011232 466
Q ss_pred cccccCCcEEEEec
Q 022407 79 LKDLHSADIIVEAI 92 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v 92 (297)
++++++||+||.+.
T Consensus 68 ~~~~~~adivIita 81 (315)
T PRK00066 68 YSDCKDADLVVITA 81 (315)
T ss_pred HHHhCCCCEEEEec
Confidence 77899999999875
No 128
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.71 E-value=1.7e-07 Score=82.65 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=78.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..|...|++|..||++++..... .......++++ +++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 689999999999999999999999999999875421100 00011234555 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|...+.+.-+-++.-+.++++++++ |++ + +.-+.+.+.+... -+..++.-|.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-NLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-ECCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 999999999988876666566667788898887 444 2 2335677777543 2334455443
No 129
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=6.9e-07 Score=77.50 Aligned_cols=196 Identities=17% Similarity=0.205 Sum_probs=125.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-- 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 81 (297)
....|+.||++.||..++.+.+.+||.|.+|+|+.++.+.....- ++| ..+....++++
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flane--------ak~-----------~~i~ga~S~ed~v 65 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANE--------AKG-----------TKIIGAYSLEDFV 65 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHh--------hcC-----------CcccCCCCHHHHH
Confidence 356899999999999999999999999999999999888763321 111 12334555554
Q ss_pred --ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCCcc-HH-HHhhhcCCCCeEEEeecCCCCCCCc-ceeE
Q 022407 82 --LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSSIS-IT-RLASATSRPCQVIGMHFMNPPPLMK-LVEV 155 (297)
Q Consensus 82 --~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~~~-~~-~l~~~~~~~~~~~g~h~~~p~~~~~-~vev 155 (297)
++..-.||..+..... ....+++|.+++.++-+|+ -..|..+ .+ ...+.....--|+|+-.-....-.+ ...+
T Consensus 66 ~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl 144 (487)
T KOG2653|consen 66 SKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL 144 (487)
T ss_pred HhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc
Confidence 5667788887754433 4567788888887665555 3333333 32 2222222334466654322211111 2346
Q ss_pred ecCCCChHHHHHHHHHHHHHhCCeE-------EEecc-chhh----hHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHH
Q 022407 156 IRGADTSDETFRATKALAERFGKTV-------VCSQD-YAGF----IVNRIL---MPMINEAFFTLYT-GVATKEDIDAG 219 (297)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~lG~~~-------v~~~d-~~g~----i~nri~---~~~~~Ea~~l~~~-g~~~~~~id~a 219 (297)
++| ++++++..++++|+.+..++ .++++ ..|- +.|-|= ..++.|+..++.. ++.+-++|..+
T Consensus 145 MpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~v 222 (487)
T KOG2653|consen 145 MPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEV 222 (487)
T ss_pred CCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 766 89999999999998874332 34554 2342 334332 3689999999988 66777777776
Q ss_pred Hh
Q 022407 220 MK 221 (297)
Q Consensus 220 ~~ 221 (297)
+.
T Consensus 223 F~ 224 (487)
T KOG2653|consen 223 FD 224 (487)
T ss_pred HH
Confidence 64
No 130
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.67 E-value=1e-07 Score=84.07 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=65.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|..+|..|+..| .+|.++|+++++++.....+.+. ..+. ......++++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~-------~~~~i~~~d~~~l~ 66 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFV-------KPVRIYAGDYADCK 66 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------cccc-------CCeEEeeCCHHHhC
Confidence 47999999999999999999999 58999999988765321111111 0000 00112356777799
Q ss_pred CCcEEEEecccC--------------HHHHHHHHHHHHhhccCCeEEe
Q 022407 84 SADIIVEAIVES--------------EDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 84 ~aD~Vi~~v~e~--------------~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+||+||.+++.. ..+.+++..+|.++.+...+++
T Consensus 67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 999999998642 2234455666777775554443
No 131
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=98.66 E-value=3.4e-08 Score=81.45 Aligned_cols=104 Identities=24% Similarity=0.336 Sum_probs=67.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCc----eEEe-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD---PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRR----LRCT- 76 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----i~~~- 76 (297)
.+|+|+|+|.||+.+|..|+.+|+ +++++|.+ .+.+.+.. ...+ +-|....+.....+.+ +.+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~------~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKAS------QVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChh------hCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 689999999999999999999999 69999998 55544311 0000 0011000000111111 1111
Q ss_pred -------cCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 77 -------SNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 77 -------~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+++.+ ++++|+||+| .++...|..++.++.+..+...++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 12223 6789999999 6888889999999888877666665
No 132
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.65 E-value=3.5e-07 Score=81.53 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=69.8
Q ss_pred cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||+|.||..+|..|+ ..|.+|+.||++...... .+ +...+++++ ++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~~-------------~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------TY-------------VDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------hh-------------ccccCCHHHHHH
Confidence 68999999999999999995 468899999988643210 00 123446666 78
Q ss_pred CCcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCccH--HHHhhhcC
Q 022407 84 SADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSISI--TRLASATS 133 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 133 (297)
+||+|+.++|.....+. ++ .+..+.++++++++..+.+..+ ..+.+.+.
T Consensus 200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~ 251 (332)
T PRK08605 200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251 (332)
T ss_pred hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999998776543 33 3455677888888744444333 45666664
No 133
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.63 E-value=3e-07 Score=81.11 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=66.2
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
-+||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+.+... + .....++.+.+++++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-------~------~~~~~v~~~~dy~~~ 69 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-------F------LKNPKIEADKDYSVT 69 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-------c------CCCCEEEECCCHHHh
Confidence 3699999999999999999998876 799999998766554333332210 0 001245556788889
Q ss_pred cCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEE
Q 022407 83 HSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAIL 116 (297)
Q Consensus 83 ~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii 116 (297)
++||+||.+.-. . ..+.+++...+.++.+...+|
T Consensus 70 ~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 70 ANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 999999986521 1 123444555677776554443
No 134
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.62 E-value=1.2e-06 Score=75.71 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=104.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD--LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~ 83 (297)
.+|+|||.|.||.-+|..+.++||.|...||+.- +.+.+ ..|. ...+++.+ -+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdy--ssaa~----------~yg~-------------~~ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDY--SSAAE----------KYGS-------------AKFTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchh--HHHHH----------Hhcc-------------cccccHHHHHhc
Confidence 5899999999999999999999999999999862 22211 1111 12233333 35
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecCCCccH--HHHhhhcCCCCeEEEeecCCCCC-CC------cce
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNTSSISI--TRLASATSRPCQVIGMHFMNPPP-LM------KLV 153 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~ts~~~~--~~l~~~~~~~~~~~g~h~~~p~~-~~------~~v 153 (297)
..|+|+.|+. ..-...+++..... .+.++++...+|.-.. +.+.+-++....++..|++..|. .. |+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999984 33344565555544 6778998876665433 55667777778899999998775 22 222
Q ss_pred eE--ecC-CCChHHHHHHHHHHHHHhCCeEEEe
Q 022407 154 EV--IRG-ADTSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 154 ev--~~~-~~~~~~~~~~~~~l~~~lG~~~v~~ 183 (297)
-+ -.+ ...-++-++.+..++...|-+.+++
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 11 122 2234889999999999999988865
No 135
>PRK15076 alpha-galactosidase; Provisional
Probab=98.61 E-value=5e-07 Score=83.12 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=54.9
Q ss_pred cEEEEECCChhHHHHHH--HHH----HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQMGSGIAQ--LGV----MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.||...+. .++ .+|.+|+++|+++++++.....+++.+... + ...+++.++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence 58999999999966655 333 356799999999999886655555444322 1 12456778885
Q ss_pred -ccccCCcEEEEecc
Q 022407 80 -KDLHSADIIVEAIV 93 (297)
Q Consensus 80 -~~~~~aD~Vi~~v~ 93 (297)
+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 55999999999873
No 136
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.60 E-value=9.3e-08 Score=75.69 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=53.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.++|+|+|+|.||..++..|++.| ++|+++|+++++.+...+.+.. .. . . ....+.++ +
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~-~~~~~~~~~~ 79 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------A-IAYLDLEELL 79 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------c-eeecchhhcc
Confidence 378999999999999999999996 8899999998877665322110 00 0 0 11233344 7
Q ss_pred cCCcEEEEecccCHH
Q 022407 83 HSADIIVEAIVESED 97 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~ 97 (297)
+++|+||.|+|.+..
T Consensus 80 ~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 80 AEADLIINTTPVGMK 94 (155)
T ss_pred ccCCEEEeCcCCCCC
Confidence 899999999988664
No 137
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.59 E-value=2.7e-07 Score=81.19 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=67.3
Q ss_pred EEEECCChhHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 8 MGVVGSGQMGSGIAQLGVMDG--LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
|+|||+|.+|+.+|..++..| .+++++|+++++++.....+++....+ ...++..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence 689999999999999999988 589999999988776655444332110 11234445667789999
Q ss_pred cEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 86 DIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 86 D~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
|+||.+... +..+.+++..++.++++ +++++.-|
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~viv~s 115 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIILVVS 115 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence 999998742 11234455556777774 44444333
No 138
>PLN02602 lactate dehydrogenase
Probab=98.58 E-value=3e-07 Score=82.11 Aligned_cols=98 Identities=21% Similarity=0.328 Sum_probs=65.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+.+.... . .. ..+....++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~-~-----------~~-~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAF-L-----------PR-TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhc-C-----------CC-CEEEeCCCHHHhC
Confidence 599999999999999999998876 7999999988766554443332110 0 00 2344445778899
Q ss_pred CCcEEEEeccc-------C-------HHHHHHHHHHHHhhccCCeEE
Q 022407 84 SADIIVEAIVE-------S-------EDVKKKLFSELDKITKASAIL 116 (297)
Q Consensus 84 ~aD~Vi~~v~e-------~-------~~~k~~~~~~l~~~~~~~~ii 116 (297)
+||+||.+.-. . ..+.+++...+.++++...+|
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999998521 1 123344555577776554433
No 139
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.58 E-value=1.1e-06 Score=83.14 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=76.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||+.+|..+...|.+|..||+.... +.. .+.| +...+++++ ++.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERA-----------EQLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEcCCHHHHHhh
Confidence 68999999999999999999999999999985321 111 1112 133456666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFM 144 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~ 144 (297)
||+|+.++|...+.+.-+-++.-+.++++++++..+-+- ....+.+.+... -...++..|
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf 256 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVF 256 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecC
Confidence 999999999877654443344555778888877333222 235677776532 233445444
No 140
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.54 E-value=1.7e-06 Score=81.93 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=76.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..+...|.+|..||++... +.. .+.| +... ++++ ++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-----------~~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-----------AQLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-----------HhcC-------------CEEE-cHHHHHhh
Confidence 68999999999999999999999999999986431 111 1112 1233 5666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFM 144 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~ 144 (297)
||+|+.++|...+.+.-+-++.-+.++++++++..+-+- .-..+.+.+... -.-.++..|
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf 257 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVF 257 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecC
Confidence 999999999887755444356667788888887333222 235677776432 233445444
No 141
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.53 E-value=2.4e-07 Score=75.16 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=74.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.+|+.+|..+..-|.+|..||++....... .+.+ ....++++ ++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-----------~~~~--------------~~~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-----------DEFG--------------VEYVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-----------HHTT--------------EEESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-----------cccc--------------ceeeehhhhcch
Confidence 689999999999999999999999999999998754421 1111 13446666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc--cHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI--SITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+.+.-+-++.-+.++++++++...-+- +-+.+.+.+... ....++..+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 999999999665433333344556778898888433332 235677766433 2334555443
No 142
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.47 E-value=2.4e-06 Score=75.61 Aligned_cols=113 Identities=21% Similarity=0.283 Sum_probs=78.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|||||+|.+|+.+|..+..-|.+|..||+ .+...+.. .+ ....+++++ ++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~~-------------~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------DG-------------VVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------cc-------------ceecccHHHHHh
Confidence 6899999999999999999999999999999 33322111 11 134566777 89
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
.||+|...+|...+-+.-+-++.-..++++++++ |++- +.-..+.+.+... -+-.++..|.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 9999999999887754434345556678888776 5552 2335677777543 2334455554
No 143
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.46 E-value=8.6e-07 Score=78.27 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=67.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCc--EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLD--VWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~--V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
+||+|+|+ |.+|..++..++..|+. |+++|+++ ++++.....+.+. +...+ ...+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~---~~~~~---------~~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDA---LAAAG---------IDAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhc---hhccC---------CCcEEEECCCHH
Confidence 58999998 99999999999999874 99999964 3333222121111 01111 012455666777
Q ss_pred cccCCcEEEEeccc------C-H-------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 81 DLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
++++||+||.++.. + . ...+.+...|.+.++ +.+++..+++.++
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHH
Confidence 79999999999841 1 1 234445556777765 5555545666554
No 144
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.46 E-value=6.2e-06 Score=72.25 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhcccCCceEEecCcccccCCcEEEEecc
Q 022407 15 QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQL-SQAMGTDAPRRLRCTSNLKDLHSADIIVEAIV 93 (297)
Q Consensus 15 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~aD~Vi~~v~ 93 (297)
.||+.+|..|+++|++|++++|+ +..+.. .+.|.. ...........+..+++++....+|+||.|++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i-----------~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vK 68 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEAL-----------NQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVK 68 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHH-----------HHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEecc
Confidence 37999999999999999999997 444443 233321 00000000012334455566778999999997
Q ss_pred cCHHHHHHHHHHHHhhccCCeEEeecCCCccH-HHHhhhcCCCCeEE-EeecC-----CCCCCC--cceeEecCC-CChH
Q 022407 94 ESEDVKKKLFSELDKITKASAILASNTSSISI-TRLASATSRPCQVI-GMHFM-----NPPPLM--KLVEVIRGA-DTSD 163 (297)
Q Consensus 94 e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-~~l~~~~~~~~~~~-g~h~~-----~p~~~~--~~vev~~~~-~~~~ 163 (297)
... ...+++.+.+++.++++|++...++.. +.+.+.++.+ +++ |..++ .|-.+. ..-.+..|. ....
T Consensus 69 s~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~ 145 (293)
T TIGR00745 69 AYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGEN 145 (293)
T ss_pred chh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCch
Confidence 543 456778888888888888888888876 4455555432 333 22222 121100 001122221 1122
Q ss_pred HHHHHHHHHHHHhCCeEEEeccchhhhHHHHH
Q 022407 164 ETFRATKALAERFGKTVVCSQDYAGFIVNRIL 195 (297)
Q Consensus 164 ~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~ 195 (297)
+..+.+...|...|.......|..+.++..++
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 45566777788777777666665554444433
No 145
>PLN02928 oxidoreductase family protein
Probab=98.45 E-value=3.6e-06 Score=75.45 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=77.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.||..+|..+...|.+|+.||++....... ..+ +................++++ ++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPED------------GLL-IPNGDVDDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhh------------hhc-cccccccccccccCcccCHHHHHhh
Confidence 689999999999999999999999999999974321110 000 000000000000001235565 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+.+.-+-++.-+.++++++|+...-+ +.-+.+.+.+... -...++..|.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 99999999987765444445566677889888843333 2335677777533 2334555543
No 146
>PRK05442 malate dehydrogenase; Provisional
Probab=98.40 E-value=1.6e-06 Score=76.91 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=68.2
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCChhhhcccC
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPD--ALVRATKSISSSIQKFVSKGQLSQAMGTDAP 70 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 70 (297)
|.++ .||+|||+ |.+|+.+|..|+..|. ++.++|++++ +++.....+.+....+. ..
T Consensus 1 ~~~~-~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~------------~~ 67 (326)
T PRK05442 1 MKAP-VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL------------AG 67 (326)
T ss_pred CCCC-cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc------------CC
Confidence 5443 69999998 9999999999988765 7999999643 23332222222110000 00
Q ss_pred CceEEecCcccccCCcEEEEecc--c------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 71 RRLRCTSNLKDLHSADIIVEAIV--E------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 71 ~~i~~~~~~~~~~~aD~Vi~~v~--e------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
.+++ .++++++++||+||.+.- . +..+.+++..+|.++.+++++++..|..+++
T Consensus 68 ~~i~-~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 68 VVIT-DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred cEEe-cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 1222 456678999999998652 1 1123445556677777667766655555544
No 147
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.40 E-value=1.5e-06 Score=75.74 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=61.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|+|+|.||..+|..|...|.+|++++|++++.+.+ .+.|.. .+ ..+++.+ +++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-----------~~~g~~----------~~-~~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-----------TEMGLI----------PF-PLNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----------HHCCCe----------ee-cHHHHHHHhcc
Confidence 689999999999999999999999999999998765443 222210 00 1123344 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+|+||.++|.... . ++..+.++++++++..+|
T Consensus 210 aDiVint~P~~ii-~----~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-T----ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-C----HHHHhcCCCCeEEEEeCc
Confidence 9999999986431 1 223345567777764444
No 148
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.38 E-value=4.2e-06 Score=73.93 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=76.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|||||+|.+|+.+|..+..-|.+|..||+..... ..+ +. ..++++ ++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---------------~~~-------------~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---------------NEE-------------YE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---------------ccC-------------ce-eecHHHHhhc
Confidence 689999999999999999998899999999863210 001 11 235666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+-+.-+-++.-+.++++++++ |++ + ++-..+.+.+... -. .++..|.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI-N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILI-NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 999999999877654444445556778899888 454 2 3335677777543 33 5666554
No 149
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.38 E-value=1.6e-06 Score=76.26 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=51.4
Q ss_pred EEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
||+|||+|.+|+.+|..++..|. ++.++|++++.++.....+.+... +.. ....++. ..+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~-------~~~----~~~~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-------LTY----STNTKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhc-------cCC----CCCEEEE-ECCHHHhCC
Confidence 69999999999999999998887 799999988766544333222110 000 0001233 467788999
Q ss_pred CcEEEEec
Q 022407 85 ADIIVEAI 92 (297)
Q Consensus 85 aD~Vi~~v 92 (297)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999876
No 150
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.34 E-value=2.9e-06 Score=66.69 Aligned_cols=87 Identities=31% Similarity=0.396 Sum_probs=56.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
+++.|+|.|..|+++|..|...|-+|+++|++|-++-++ ...|. .+. ++++ ++.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------~~dGf-------------~v~-~~~~a~~~ 78 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------AMDGF-------------EVM-TLEEALRD 78 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------HHTT--------------EEE--HHHHTTT
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------hhcCc-------------Eec-CHHHHHhh
Confidence 689999999999999999999999999999999765443 33342 333 3444 889
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+|++|.+......+..+.| +.+++++|+++.++
T Consensus 79 adi~vtaTG~~~vi~~e~~----~~mkdgail~n~Gh 111 (162)
T PF00670_consen 79 ADIFVTATGNKDVITGEHF----RQMKDGAILANAGH 111 (162)
T ss_dssp -SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESSS
T ss_pred CCEEEECCCCccccCHHHH----HHhcCCeEEeccCc
Confidence 9999998765443333333 34678888885444
No 151
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.34 E-value=3.7e-06 Score=75.93 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=70.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|||||+|.||+.+|..+...|++|.+||+.....+ +. ....++++ ++.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~-------------~~~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD-------------GDFVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC-------------ccccCHHHHHhh
Confidence 6899999999999999999999999999998543110 00 01235666 689
Q ss_pred CcEEEEecccCHH---HHHHHH-HHHHhhccCCeEEeecCCCc--cHHHHhhhcCC-CCeEEEeecC
Q 022407 85 ADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTSSI--SITRLASATSR-PCQVIGMHFM 144 (297)
Q Consensus 85 aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts~~--~~~~l~~~~~~-~~~~~g~h~~ 144 (297)
||+|+.++|-..+ ....++ ++.-..++++++++..+-+- ....+.+.+.. .....++..|
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 9999999996542 122333 33445678888887333332 23566666633 2233444444
No 152
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.34 E-value=2e-06 Score=74.95 Aligned_cols=107 Identities=22% Similarity=0.376 Sum_probs=65.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
+||+|||+|.+|+++|..|+..++ ++.++|++++..+.-...+.+.... .....++....++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~------------~~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAP------------LGSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchh------------ccCceEEecCCChhhhc
Confidence 489999999999999999987654 8999999965544322221111100 00112222224478899
Q ss_pred CCcEEEEec--ccC------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 84 SADIIVEAI--VES------------EDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 84 ~aD~Vi~~v--~e~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
+||+|+.+. |.. ..+.+.+..++.+.++ +.+++..|..+.+
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVvtNPvD~ 123 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVVTNPVDI 123 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEecCcHHH
Confidence 999999987 322 2234455556777776 5555445555444
No 153
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.33 E-value=9.2e-06 Score=74.43 Aligned_cols=108 Identities=26% Similarity=0.385 Sum_probs=75.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|||||+|.+|+.+|..+..-|.+|..||+.+... .+ ......++++ ++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence 689999999999999999999999999999863210 00 0123446777 799
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcCCC-CeEEEee
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATSRP-CQVIGMH 142 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~~~-~~~~g~h 142 (297)
||+|+.++|-..+.+.-+-++.-..++++++++ |++. ++...+.+.+... -.-.++.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~~g~i~gaalD 264 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALKSGHLAGAAID 264 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHHcCCceEEEEc
Confidence 999999999877654444345566778888887 4542 2335677666432 2334444
No 154
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.30 E-value=8.4e-06 Score=68.06 Aligned_cols=151 Identities=21% Similarity=0.309 Sum_probs=107.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL----DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|++||+|.|..+++..+..+|. ++..+-.+...... .+.+.|. -.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g~------------~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALGV------------KTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCCc------------eeeechHHH
Confidence 479999999999999999999886 34444332111111 0122222 123444445
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee-EecCCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE-VIRGAD 160 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve-v~~~~~ 160 (297)
++.+|+++.++ ++++...+..++......+.||+|...+..++.+...++.+.|++...+..|..+..... +..+..
T Consensus 59 ~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 88999999999 455566777777665667779998999999988888888778899999988886665555 345556
Q ss_pred ChHHHHHHHHHHHHHhCCeE
Q 022407 161 TSDETFRATKALAERFGKTV 180 (297)
Q Consensus 161 ~~~~~~~~~~~l~~~lG~~~ 180 (297)
...+..+.+..++...|+-.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 67777788999999998844
No 155
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=98.30 E-value=4.3e-06 Score=74.06 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR 74 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
..||+|||+ |.+|+.+|..|...|. ++.++|+++ ++++.....+.+... ......+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~--------------~~~~~~~ 68 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAF--------------PLLAGVV 68 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccc--------------cccCCcE
Confidence 358999998 9999999999998886 799999965 323332222221110 0011112
Q ss_pred E-ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
. .++++++++||+||.+.-- +..+.+.+..++.++++++++++..|..+++
T Consensus 69 i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 69 ATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 2 4567789999999987521 1223455566688888767766655555544
No 156
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.30 E-value=2.5e-05 Score=64.58 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=35.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|+|+|+|.||..+|..|.+.|++|+++|+++++++..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~ 67 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA 67 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 689999999999999999999999999999998776654
No 157
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.26 E-value=2.3e-06 Score=75.81 Aligned_cols=107 Identities=9% Similarity=0.050 Sum_probs=66.1
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR 74 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
..||+|||+ |.+|..+|..++..|. ++.++|++++. ++...-.+.+. .. ....+++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~--------~~------~~~~~~~ 67 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDC--------AF------PLLAEIV 67 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhc--------cc------cccCceE
Confidence 369999999 9999999999998887 79999996432 32221111111 00 0111122
Q ss_pred E-ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 75 C-TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 75 ~-~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
. .++++++++||+||.+.-- +..+.+.+..+|.++.+++.+++..|..+++
T Consensus 68 i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 68 ITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred EecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 2 4566789999999987521 1223445556677888656665545554443
No 158
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.25 E-value=4.6e-06 Score=73.87 Aligned_cols=93 Identities=22% Similarity=0.229 Sum_probs=62.7
Q ss_pred CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.||..++..+.. ...+|++|+|++++.+++.+.+++ .|. .+...++.++
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a 186 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA 186 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence 4789999999999999985553 447899999999988877544321 121 1345566665
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.+.... ++. .+.+++++.|...++
T Consensus 187 v~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~ 220 (314)
T PRK06141 187 VRQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGN 220 (314)
T ss_pred HhcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCC
Confidence 8899999888875522 221 135566776654444
No 159
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.25 E-value=2.4e-06 Score=74.11 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=53.5
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||.| .||.+||..|.++|+.|++|++... ++++ ++
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------------------------~l~e~~~ 201 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------------------------DAKALCR 201 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 789999996 9999999999999999999986532 2233 56
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
.||+||.+++....+...+ ++++++++..
T Consensus 202 ~ADIVIsavg~~~~v~~~~-------ik~GaiVIDv 230 (301)
T PRK14194 202 QADIVVAAVGRPRLIDADW-------LKPGAVVIDV 230 (301)
T ss_pred cCCEEEEecCChhcccHhh-------ccCCcEEEEe
Confidence 7999999998765544433 6677776643
No 160
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=98.25 E-value=1.1e-05 Score=74.07 Aligned_cols=106 Identities=8% Similarity=0.083 Sum_probs=70.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE-
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMD-------GL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR- 74 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~- 74 (297)
-||+|||+ |.+|..+|..|+.. |+ ++.++|+++++++...-.+++....+. ..++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence 58999999 99999999999987 66 799999999987766544444331111 1233
Q ss_pred EecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 75 CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 75 ~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
.+++++++++||+||.+.-- +..+.+++...|.++..++.+++..+...++
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 34677889999999987521 1123444455566654566666545554443
No 161
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.23 E-value=1.3e-05 Score=70.40 Aligned_cols=89 Identities=22% Similarity=0.178 Sum_probs=60.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
+||+|||+|.+|..++..|...|.+|+++|+++++.+.+ .+.|.. ....+++.+ +++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-----------~~~G~~-----------~~~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-----------TEMGLS-----------PFHLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----------HHcCCe-----------eecHHHHHHHhCC
Confidence 699999999999999999999999999999998765443 222320 001123333 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+|+||.++|... +-++.-+.++++.+|+...+
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEcc
Confidence 999999998432 22233344566666654443
No 162
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.21 E-value=1.9e-05 Score=69.87 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=74.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||.|.+|+.+|..+..-|.+|..||+.... .. . ....++++ ++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~----------------~~~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------R----------------EGYTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------c----------------cccCCHHHHHHh
Confidence 69999999999999999998889999999875321 00 0 01235666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+-+.-+-++.-..++++++++ |++ + +.-..+.+.+... -.-.++..|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 999999999877644434445556778899888 454 2 2335677777532 2334455443
No 163
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.21 E-value=6.1e-06 Score=71.44 Aligned_cols=71 Identities=25% Similarity=0.201 Sum_probs=51.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.+||+|||+|.||..++..|.+. +++|. ++|+++++.+...+ +.|. ....+++++
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~----------~~g~------------~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIW----------GLRR------------PPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHH----------hcCC------------CcccCCHHH
Confidence 37899999999999999999863 78876 88999887654411 1111 123455665
Q ss_pred -ccCCcEEEEecccCHH
Q 022407 82 -LHSADIIVEAIVESED 97 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~ 97 (297)
+.++|+|++|.|.+.+
T Consensus 64 ll~~~D~Vvi~tp~~~h 80 (271)
T PRK13302 64 LATHADIVVEAAPASVL 80 (271)
T ss_pred HhcCCCEEEECCCcHHH
Confidence 6789999999997664
No 164
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.20 E-value=8.1e-06 Score=70.54 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=49.9
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+ ..+ ....+++++
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~----------~~~-------------~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLAS----------KTG-------------AKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHH----------hcC-------------CeeECCHHHH
Confidence 5899999999999999998876 455 5589999887665411 111 134556666
Q ss_pred ccCCcEEEEecccCH
Q 022407 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
+.++|+|++|.+.+.
T Consensus 59 l~~~DvVvi~a~~~~ 73 (265)
T PRK13304 59 VEDVDLVVECASVNA 73 (265)
T ss_pred hcCCCEEEEcCChHH
Confidence 588999999997544
No 165
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.20 E-value=1.6e-06 Score=78.09 Aligned_cols=110 Identities=22% Similarity=0.262 Sum_probs=70.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|||||+|.||+.+|..+..-|.+|.+||+.... . +. . ....++++ ++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~---------------~~-----------~-~~~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R---------------GD-----------E-GDFRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c---------------cc-----------c-cccCCHHHHHhh
Confidence 69999999999999999999999999999974321 0 00 0 01235666 689
Q ss_pred CcEEEEecccCHH---HHHHHH-HHHHhhccCCeEEeecCC-Cc--cHHHHhhhcCC-CCeEEEeecCC
Q 022407 85 ADIIVEAIVESED---VKKKLF-SELDKITKASAILASNTS-SI--SITRLASATSR-PCQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~---~k~~~~-~~l~~~~~~~~ii~s~ts-~~--~~~~l~~~~~~-~~~~~g~h~~~ 145 (297)
||+|+..+|-..+ -...++ ++.-..++++++++ |++ +- +-..+.+.+.. ...-.++..|.
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e 235 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCLNEGQKLSVVLDVWE 235 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHHHhCCCcEEEEecCC
Confidence 9999999985442 011222 33445678888888 454 32 33566666633 23334454443
No 166
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.20 E-value=5.7e-06 Score=63.92 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|.|||+|-||++++..|+..|.+ |++++|+.++++.+.+.+ .+. .-.+...+++.. +
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---------~~~---------~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---------GGV---------NIEAIPLEDLEEAL 73 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---------TGC---------SEEEEEGGGHCHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---------Ccc---------ccceeeHHHHHHHH
Confidence 36899999999999999999999997 999999999887764322 010 001122333443 6
Q ss_pred cCCcEEEEecccCH
Q 022407 83 HSADIIVEAIVESE 96 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~ 96 (297)
..+|+||.|.|-..
T Consensus 74 ~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 QEADIVINATPSGM 87 (135)
T ss_dssp HTESEEEE-SSTTS
T ss_pred hhCCeEEEecCCCC
Confidence 78999999987654
No 167
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.20 E-value=9.6e-05 Score=63.55 Aligned_cols=203 Identities=14% Similarity=0.245 Sum_probs=117.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHH----HHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKS----ISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
++||+-||+|.+|.+-...++.. -.+|+++|.+..++.+-... .+-.++..++ ..+-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~---------~crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVK---------QCRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHH---------HhcCCceeeecc
Confidence 36899999999999888776643 46899999999887653211 0111222222 122355678888
Q ss_pred ccc-ccCCcEEEEecccC-------------HHHHHHHHHHHHhhccCCeEEeecCCCccH---HHHhhhcCCCCeEEEe
Q 022407 79 LKD-LHSADIIVEAIVES-------------EDVKKKLFSELDKITKASAILASNTSSISI---TRLASATSRPCQVIGM 141 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v~e~-------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---~~l~~~~~~~~~~~g~ 141 (297)
.+. ++++|+|+.+|..+ +..-+...+.|.+....+.|++ ..|++|+ +.+...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 887 99999999998442 2223344455677776777776 4566665 345555543221 22
Q ss_pred ec--C-CCCCCC----------cceeEecCCCChHH---HHHHHHHHHHHh-CCeEEEec-----cchhhhHHHHHH---
Q 022407 142 HF--M-NPPPLM----------KLVEVIRGADTSDE---TFRATKALAERF-GKTVVCSQ-----DYAGFIVNRILM--- 196 (297)
Q Consensus 142 h~--~-~p~~~~----------~~vev~~~~~~~~~---~~~~~~~l~~~l-G~~~v~~~-----d~~g~i~nri~~--- 196 (297)
+| + ||.-+. +--.++.|.. +|+ +++.+..+++.+ -+.-+... +-.-+.+|.+++
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrvligg~e-tpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqri 227 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE-TPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRI 227 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceEEECCCC-ChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHH
Confidence 22 1 222111 1123455544 444 445555555543 22222222 223345555554
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHH
Q 022407 197 PMINEAFFTLYTGVATKEDIDAGM 220 (297)
Q Consensus 197 ~~~~Ea~~l~~~g~~~~~~id~a~ 220 (297)
.-+|..-.++|.-+++..++..|.
T Consensus 228 ssins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 228 SSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred hhhHHHHHHHHhcCCCHHHHHHHh
Confidence 356777788888889998888876
No 168
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.18 E-value=4.2e-05 Score=66.43 Aligned_cols=170 Identities=21% Similarity=0.229 Sum_probs=104.7
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC--CC-----cEEEEeCCHHHHH---HHHHHHHHH--HHHHHHcCCCChhhhcccCC
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMD--GL-----DVWLVDTDPDALV---RATKSISSS--IQKFVSKGQLSQAMGTDAPR 71 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~ 71 (297)
...||+|||+|++|+.||..+..+ ++ +|..|-...+.-. .+.+-|.+. .-+++.. -....
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg--------~~lP~ 91 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPG--------IKLPE 91 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCC--------ccCCC
Confidence 346899999999999999988763 22 5777765443222 233333211 1112111 12345
Q ss_pred ceEEecCccc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH-----------HHHhhhcCCCCeEE
Q 022407 72 RLRCTSNLKD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI-----------TRLASATSRPCQVI 139 (297)
Q Consensus 72 ~i~~~~~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~-----------~~l~~~~~~~~~~~ 139 (297)
++...+|+.+ +.+||++|..+|... ...++.+|..+.++++..+|.+.++.. +.|.+.++-|..++
T Consensus 92 NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL 169 (372)
T KOG2711|consen 92 NVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVL 169 (372)
T ss_pred CeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceee
Confidence 6777888876 889999999999655 667899999999999988888776652 23444555444432
Q ss_pred EeecCCCCCCCc------ceeEecCCCChHHHHHHHHHHHHHhCCeEEEeccchh
Q 022407 140 GMHFMNPPPLMK------LVEVIRGADTSDETFRATKALAERFGKTVVCSQDYAG 188 (297)
Q Consensus 140 g~h~~~p~~~~~------~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g 188 (297)
. .|++.. ..|-..+.....+.-..+..+|++--..++.+.|..+
T Consensus 170 ~-----GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~ 219 (372)
T KOG2711|consen 170 M-----GANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG 219 (372)
T ss_pred c-----CCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence 2 222211 2344334333333333467777777777777777654
No 169
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=98.18 E-value=2.3e-05 Score=70.78 Aligned_cols=107 Identities=10% Similarity=0.110 Sum_probs=68.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCC-------cEEEE--eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGL-------DVWLV--DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR 74 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.-||+|||+ |.+|..+|..++..|. .+.++ |++.++++...-.+.+....+ ..+++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~--------------~~~v~ 109 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPL--------------LREVS 109 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhh--------------cCceE
Confidence 358999999 9999999999998775 24445 888887766544444332111 11233
Q ss_pred -EecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 75 -CTSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 75 -~~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
.+++++++++||+||.+.-- +..+.+.+...|.++.+++.+++..|...++
T Consensus 110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 34567789999999986521 1223444555677777677766655544443
No 170
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.18 E-value=0.00012 Score=62.79 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=103.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|+|||+|..|.+-|.+|..+|.+|++--|.... -+++ .+.|. .+.+-.+.++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA-----------~~dGf-------------~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKA-----------KEDGF-------------KVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHH-----------HhcCC-------------EeecHHHHhhc
Confidence 69999999999999999999999998877665443 2222 44453 44444445899
Q ss_pred CcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC----------c-c
Q 022407 85 ADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM----------K-L 152 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~----------~-~ 152 (297)
||+|+..+|+.. ..+++. +|.+.++.+..+.... ++.+..-.-..+....++=..|=.|-+.. | +
T Consensus 75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~FaH-GfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~L 151 (338)
T COG0059 75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALGFAH-GFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPAL 151 (338)
T ss_pred CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEEecc-ccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeE
Confidence 999999999655 446666 7999999888776433 33332111111111222222333332211 1 2
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeE---EEe---c----cchh--hhHHHHHHHHHHHHHHHHHcCCCCHH
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTV---VCS---Q----DYAG--FIVNRILMPMINEAFFTLYTGVATKE 214 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~---v~~---~----d~~g--~i~nri~~~~~~Ea~~l~~~g~~~~~ 214 (297)
+-|-. ..+-.+.+.+..+.+.+|... +.. . |--| .+.--.+..++..++..+-+.+.+|+
T Consensus 152 iAV~q--D~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE 223 (338)
T COG0059 152 IAVHQ--DASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPE 223 (338)
T ss_pred EEEEe--CCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHH
Confidence 22332 234457888888999998543 211 1 1112 13333455666666655433334554
No 171
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.17 E-value=1.2e-05 Score=70.80 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=61.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cC---
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SN--- 78 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--- 78 (297)
+||+|||+ |.+|+.+|..++..|. ++.++|++ +++...-. +..+. ...+++.. .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alD--------L~~~~--------~~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAAD--------LSHIN--------TPAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehH--------hHhCC--------CcceEEEecCCCch
Confidence 48999999 9999999999998885 89999998 22211001 11110 11234432 32
Q ss_pred cccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407 79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
++++++||+||.+.-- +..+.+++...+.++.+ +++++.-|...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCch
Confidence 6789999999987621 12234445556777754 55555344443
No 172
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.16 E-value=9.4e-06 Score=73.66 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=91.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEE------EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVW------LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
++|+|||+|..|...|..|...|++|+ .+|.+.+.-+.+ .+.|. .+ .++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA-----------~~dGF-------------~v-~~~ 91 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKA-----------TENGF-------------KV-GTY 91 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHH-----------HhcCC-------------cc-CCH
Confidence 789999999999999999999999999 444333333332 23332 23 334
Q ss_pred cc-ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCC--------
Q 022407 80 KD-LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLM-------- 150 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~-------- 150 (297)
++ ++.||+|+..+|+. . ...++.++.+.+++++.+.-+. +..+....-..+....++-+.|=.|-+..
T Consensus 92 ~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~fsH-GFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~ 168 (487)
T PRK05225 92 EELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGYSH-GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGF 168 (487)
T ss_pred HHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEecC-CceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCC
Confidence 44 89999999999987 3 6777889999999998887443 33332111111122334434343332211
Q ss_pred --c-ceeEecCCCChHHHHHHHHHHHHHhCCe
Q 022407 151 --K-LVEVIRGADTSDETFRATKALAERFGKT 179 (297)
Q Consensus 151 --~-~vev~~~~~~~~~~~~~~~~l~~~lG~~ 179 (297)
| ++-|-.-...+-.+.+.+..+...+|..
T Consensus 169 Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 169 GVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 1 2233311234556788888899999876
No 173
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.13 E-value=4.1e-05 Score=67.97 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=75.1
Q ss_pred cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|||||+|.+|..+|..+. .-|.+|..||+....... ...+ +.. .++++ ++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~------------~~~~-------------~~~-~~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE------------ERFN-------------ARY-CDLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH------------HhcC-------------cEe-cCHHHHHH
Confidence 78999999999999999987 678899999986422110 0111 122 35666 79
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFM 144 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~ 144 (297)
.||+|+.++|-..+.+.-+-++.-..++++++++ |++ + +.-+.+.+.+... -.-.++..|
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 9999999999888755444445666778898888 554 2 2335677777533 223444444
No 174
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.12 E-value=3.4e-05 Score=68.37 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=74.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.+|+.+|..+..-|.+|..||+.... .. .. ..++++ ++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence 68999999999999999999999999999986321 00 00 124666 789
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
||+|+.++|-..+-+.-+-++.-+.++++++++ |++ + +.-..+.+.+... -.-.++..|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 999999999877754444455666778899888 554 2 2335677777532 2334454443
No 175
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.12 E-value=2.7e-05 Score=70.92 Aligned_cols=84 Identities=26% Similarity=0.307 Sum_probs=59.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+++.+ ...|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-----------~~~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-----------AMEGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-----------HhcCC-------------EEccHHHHHcCC
Confidence 689999999999999999999999999999999887665 33342 111111236789
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
|+||+|......+. .+.-+.++++.+++
T Consensus 259 DVVI~atG~~~~i~----~~~l~~mk~Ggilv 286 (413)
T cd00401 259 DIFVTTTGNKDIIT----GEHFEQMKDGAIVC 286 (413)
T ss_pred CEEEECCCCHHHHH----HHHHhcCCCCcEEE
Confidence 99999986433222 23334567777665
No 176
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.12 E-value=1.3e-05 Score=60.93 Aligned_cols=101 Identities=27% Similarity=0.431 Sum_probs=58.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|+|+ |.||+.++..+.+ .|+++. .+|++++... |.-..+-.......+...+++++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~----------------g~d~g~~~~~~~~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV----------------GKDVGELAGIGPLGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT----------------TSBCHHHCTSST-SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc----------------cchhhhhhCcCCcccccchhHHHh
Confidence 48999999 9999999999888 788855 7788762110 00000000111233456778877
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR 127 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 127 (297)
+..+|++|+... ++ .+...+...++.+.-+++.|.+.+.++
T Consensus 65 ~~~~DVvIDfT~--p~---~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 65 LEEADVVIDFTN--PD---AVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp TTH-SEEEEES---HH---HHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred cccCCEEEEcCC--hH---HhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 777999999772 22 223333344444666666788887543
No 177
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.12 E-value=1e-05 Score=71.61 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=73.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
+++||||.|.+|..+|..+..-|.+|..||+++. -+.. +.+ ..++.+ +++ ++.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~------------~~~------------~~~y~~-l~ell~~ 200 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE------------KEL------------GARYVD-LDELLAE 200 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH------------hhc------------Cceecc-HHHHHHh
Confidence 7999999999999999999977889999999875 1111 111 013444 665 899
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC---ccHHHHhhhcC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS---ISITRLASATS 133 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~---~~~~~l~~~~~ 133 (297)
||+|+..+|-..+-..-+-++.-+.++++++|+ ||+- ++...+.+.+.
T Consensus 201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 201 SDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDALK 251 (324)
T ss_pred CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence 999999999888765555566677788888887 6652 33356666664
No 178
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=5.9e-05 Score=63.49 Aligned_cols=93 Identities=18% Similarity=0.290 Sum_probs=61.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecC---cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSN---LK 80 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~---~~ 80 (297)
|+|.|||+|.+|..+|..|.+.||+|+++|+++++.++.... +.. .+... .++ ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---------~~~-----------~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---------ELD-----------THVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---------hcc-----------eEEEEecCCCHHHHH
Confidence 589999999999999999999999999999999987763110 010 00111 112 22
Q ss_pred c--ccCCcEEEEecccCHHHHHHHHHHHHhh-ccCCeEEeecC
Q 022407 81 D--LHSADIIVEAIVESEDVKKKLFSELDKI-TKASAILASNT 120 (297)
Q Consensus 81 ~--~~~aD~Vi~~v~e~~~~k~~~~~~l~~~-~~~~~ii~s~t 120 (297)
+ +.++|+++.+..++.. ..++..+... .....+++...
T Consensus 61 ~agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 61 EAGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred hcCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEec
Confidence 2 6889999999987663 3444444432 34445555333
No 179
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=98.09 E-value=2.8e-05 Score=62.81 Aligned_cols=32 Identities=41% Similarity=0.627 Sum_probs=30.0
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
||+|||+|.||+.++..|+.+|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599999986
No 180
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.08 E-value=1.9e-05 Score=69.89 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=51.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
-++|+|||+|.||..++..|...| .+|+++|+++++.+.+.+. .|. .....++..+ +
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l 236 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----------LGG-----------NAVPLDELLELL 236 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----------cCC-----------eEEeHHHHHHHH
Confidence 478999999999999999998865 6899999999876554211 121 0111123333 6
Q ss_pred cCCcEEEEecccCHH
Q 022407 83 HSADIIVEAIVESED 97 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~ 97 (297)
.++|+||.|++.+..
T Consensus 237 ~~aDvVi~at~~~~~ 251 (311)
T cd05213 237 NEADVVISATGAPHY 251 (311)
T ss_pred hcCCEEEECCCCCch
Confidence 789999999986554
No 181
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=98.08 E-value=1.6e-05 Score=70.09 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=60.8
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-e-cC--c
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-T-SN--L 79 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~ 79 (297)
||+|||+ |.+|+.+|..|+..|+ ++.++|+++ .+.. .++ ...+. ...++.. . ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~------a~D--L~~~~--------~~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGV------AAD--LSHIP--------TAASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEE------Ech--hhcCC--------cCceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 1110 000 11111 1123443 2 22 6
Q ss_pred ccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 80 KDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+++++||+||.+..- +..+.+++...+.++. ++++++.-|...+
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvD 120 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVN 120 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchh
Confidence 779999999987621 2223445555677775 4555544444443
No 182
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=98.06 E-value=1.1e-05 Score=70.83 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=61.9
Q ss_pred EECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcccccCCc
Q 022407 10 VVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLKDLHSAD 86 (297)
Q Consensus 10 iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~aD 86 (297)
|||+|.+|..+|..++..+. ++.++|++++.++.....+.+.... ...+.+. ..+++++++||
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~--------------~~~~~~i~~~~~~~~~daD 66 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASF--------------LPTPKKIRSGDYSDCKDAD 66 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcc--------------cCCCeEEecCCHHHHCCCC
Confidence 69999999999999998886 7999999887766544333332110 0011122 35677899999
Q ss_pred EEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407 87 IIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSS 122 (297)
Q Consensus 87 ~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 122 (297)
+||.+.-. +..+.+++...+.++. ++++++.-|..
T Consensus 67 ivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP 115 (299)
T TIGR01771 67 LVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNP 115 (299)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 99987632 1123444555577765 45544434433
No 183
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.05 E-value=2.4e-05 Score=72.00 Aligned_cols=88 Identities=30% Similarity=0.365 Sum_probs=61.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|||+|.+|+.+|..+...|.+|+++|+++.+...+ ...|. .. .++++ ++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-----------~~~G~-------------~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-----------AMEGY-------------QV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-----------HhcCc-------------ee-ccHHHHHhc
Confidence 689999999999999999999999999999987764332 11221 11 23444 789
Q ss_pred CcEEEEecccCHHHHHHHH-HHHHhhccCCeEEeecCCCcc
Q 022407 85 ADIIVEAIVESEDVKKKLF-SELDKITKASAILASNTSSIS 124 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~-~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+|+||.+.... .++ .+.-+.++++++++ |++...
T Consensus 310 ADIVI~atGt~-----~iI~~e~~~~MKpGAiLI-NvGr~d 344 (476)
T PTZ00075 310 ADIFVTATGNK-----DIITLEHMRRMKNNAIVG-NIGHFD 344 (476)
T ss_pred CCEEEECCCcc-----cccCHHHHhccCCCcEEE-EcCCCc
Confidence 99999986422 233 23344567888877 454444
No 184
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.04 E-value=9e-06 Score=72.10 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=63.2
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDP--DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC- 75 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 75 (297)
||+|+|+ |.+|+.+|..|+..|. ++.++|+++ +.++.....+.+.. .......+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~--------------~~~~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCA--------------FPLLKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhc--------------ccccCCcEEe
Confidence 7999999 9999999999998664 599999987 43322111111100 001111222
Q ss_pred ecCcccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 76 TSNLKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 76 ~~~~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
.++++++++||+||.+.-. +..+.+++..++.+++.++.+++..|..+++
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 131 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT 131 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH
Confidence 4456679999999986521 1223455556677886456655545544443
No 185
>PLN00106 malate dehydrogenase
Probab=98.03 E-value=3.1e-05 Score=68.54 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=60.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC---
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN--- 78 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 78 (297)
.||+|||+ |.+|+.+|..|+..++ ++.++|+++ .+...-. +.... . ...+.. +++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~D--------l~~~~-------~-~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAAD--------VSHIN-------T-PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEch--------hhhCC-------c-CceEEEEeCCCCH
Confidence 68999999 9999999999997776 899999987 1110000 00000 0 112332 233
Q ss_pred cccccCCcEEEEeccc--------------CHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 79 LKDLHSADIIVEAIVE--------------SEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e--------------~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
.+++++||+||.+.-. +..+..++...+.++.+ +.+++..|....
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPvD 139 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPVN 139 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCcc
Confidence 4569999999987521 22234455566777764 455443444443
No 186
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.03 E-value=2.8e-05 Score=69.20 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=63.4
Q ss_pred CcEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|.||...+..+.. ...+|.+||+++++.+...+.+++ .|. .+...++.++
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~ea 189 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREA 189 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHH
Confidence 4789999999999997666543 456899999999998776544321 121 1345666666
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|+|....+ +. ..++++++.|....+
T Consensus 190 v~~aDiVitaT~s~~P~----~~--~~~l~~g~~v~~vGs 223 (325)
T TIGR02371 190 VEGCDILVTTTPSRKPV----VK--ADWVSEGTHINAIGA 223 (325)
T ss_pred hccCCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 89999999999865422 11 234577776654443
No 187
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.02 E-value=3.5e-05 Score=70.02 Aligned_cols=96 Identities=26% Similarity=0.311 Sum_probs=64.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-cccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 84 (297)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+ ...|. .+. +.+ .++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-----------~~~G~-------------~v~-~leeal~~ 250 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-----------AMDGF-------------RVM-TMEEAAKI 250 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-----------HhcCC-------------EeC-CHHHHHhc
Confidence 689999999999999999999999999999998765433 22232 122 223 3788
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhh
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLAS 130 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~ 130 (297)
+|+||++......+. .+.-..++++++++.... . ++...+.+
T Consensus 251 aDVVItaTG~~~vI~----~~~~~~mK~GailiN~G~~~~eId~~aL~~ 295 (406)
T TIGR00936 251 GDIFITATGNKDVIR----GEHFENMKDGAIVANIGHFDVEIDVKALEE 295 (406)
T ss_pred CCEEEECCCCHHHHH----HHHHhcCCCCcEEEEECCCCceeCHHHHHH
Confidence 999999876422222 234456778887773333 1 33445544
No 188
>PLN02306 hydroxypyruvate reductase
Probab=98.01 E-value=2.1e-05 Score=71.31 Aligned_cols=128 Identities=22% Similarity=0.303 Sum_probs=77.0
Q ss_pred cEEEEECCChhHHHHHHHHH-HCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 6 KVMGVVGSGQMGSGIAQLGV-MDGLDVWLVDTDPDA-LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
++|||||+|.+|+.+|..+. .-|.+|..||+.... .+....... ......+. ....+....++++ +
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~~~~--------~~~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKANGE--------QPVTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---cccccccc--------ccccccccCCHHHHH
Confidence 68999999999999999986 669999999987542 111000000 00000000 0001122346777 7
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-C--ccHHHHhhhcCCC-CeEEEeecCC
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-S--ISITRLASATSRP-CQVIGMHFMN 145 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-~--~~~~~l~~~~~~~-~~~~g~h~~~ 145 (297)
+.||+|+.++|-..+.+.-+-++.-+.++++++++ |++ + +.-..+.+.+... -...++.-|.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 99999999999777654444455666788899888 554 2 2335676766432 2334444443
No 189
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2e-05 Score=68.55 Aligned_cols=68 Identities=29% Similarity=0.291 Sum_probs=52.2
Q ss_pred cEEEEEC-CChhHHHHHHHHHHCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 6 KVMGVVG-SGQMGSGIAQLGVMDGLDVWLVD-TDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~V~iiG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
++|+||| .|.||.+||..|.++|+.|++|+ ++++ +++ +
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~---------------------------------------l~e~~ 199 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD---------------------------------------LPAVC 199 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC---------------------------------------HHHHH
Confidence 7899999 89999999999999999999995 5532 122 4
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+.||+||.|++.+..+...+ ++++++++..
T Consensus 200 ~~ADIVIsavg~~~~v~~~~-------lk~GavVIDv 229 (296)
T PRK14188 200 RRADILVAAVGRPEMVKGDW-------IKPGATVIDV 229 (296)
T ss_pred hcCCEEEEecCChhhcchhe-------ecCCCEEEEc
Confidence 57999999998765443322 6677776643
No 190
>PRK04148 hypothetical protein; Provisional
Probab=98.00 E-value=6.8e-05 Score=57.24 Aligned_cols=95 Identities=23% Similarity=0.250 Sum_probs=64.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|.+||+| -|..+|..|++.|++|+.+|.+++.++.+++ .+. ....+.+ +..+++--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~------~~v~dDl-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGL------NAFVDDL-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCC------eEEECcC-CCCCHHHHhcC
Confidence 679999999 8999999999999999999999998776622 221 0000111 12223336899
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
|+|-.+-|. .+ .+.-+.+|.+...-+.+|..-+.
T Consensus 79 ~liysirpp-~e-l~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIRPP-RD-LQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CEEEEeCCC-HH-HHHHHHHHHHHcCCCEEEEcCCC
Confidence 999998874 33 34455567777777777765444
No 191
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.98 E-value=3.2e-05 Score=68.60 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCceEE
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGL-------DVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGT-DAPRRLRC 75 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~ 75 (297)
||+|||+ |.+|+.+|..|+..|. ++.++|++++. ++.....+.+ .. .....+..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d---------------~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMD---------------CAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhc---------------ccchhcCceec
Confidence 5999999 9999999999998655 59999996542 2211101110 00 11122333
Q ss_pred e-cCcccccCCcEEEEeccc--C------------HHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 76 T-SNLKDLHSADIIVEAIVE--S------------EDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 76 ~-~~~~~~~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
+ ++++++++||+||.+.-. . ..+.+++..+|.++++++++++..|..+++
T Consensus 66 ~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 66 THDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred cCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 3 346779999999986521 1 122444555677776566666555555444
No 192
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.96 E-value=4.6e-05 Score=69.67 Aligned_cols=85 Identities=31% Similarity=0.356 Sum_probs=60.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+ ...|. .+ .++++ +++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-----------~~~G~-------------~v-~~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-----------AMDGF-------------RV-MTMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-----------HhcCC-------------Ee-cCHHHHHhC
Confidence 689999999999999999999999999999998765433 22221 11 12333 678
Q ss_pred CcEEEEecccCHHHHHHHHH-HHHhhccCCeEEeecC
Q 022407 85 ADIIVEAIVESEDVKKKLFS-ELDKITKASAILASNT 120 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~-~l~~~~~~~~ii~s~t 120 (297)
+|+||++..... ++. +.-..++++++++...
T Consensus 268 aDVVI~aTG~~~-----vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 268 GDIFVTATGNKD-----VITAEHMEAMKDGAILANIG 299 (425)
T ss_pred CCEEEECCCCHH-----HHHHHHHhcCCCCCEEEEcC
Confidence 999999874322 332 4445677888776433
No 193
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.91 E-value=4.9e-05 Score=66.83 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=72.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
-++|+|+|+|.+|..+|.+|...|..+.-+.|++...+.. .+.+. -..|.++ ++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-----------~~~~~--------------~~~d~~~~~~ 216 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-----------YEYYA--------------EFVDIEELLA 216 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-----------HHhcc--------------cccCHHHHHh
Confidence 3799999999999999999999994444555655544433 11111 1334455 88
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH--HHHhhhcC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI--TRLASATS 133 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--~~l~~~~~ 133 (297)
.+|+|+.|.|-..+...-+-+++-..++++.+|+...-+--+ +.+.+.+.
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh
Confidence 999999999999987666667788889999988844433332 45666553
No 194
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.90 E-value=0.00018 Score=58.03 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=48.8
Q ss_pred EEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 7 VMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
||+|||+|..-.+.-.. +.. .+-++.++|+++++++....-.+...+. .|. .-++..++|.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~---~~~---------~~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEE---AGA---------DLKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHH---CTT---------SSEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHh---cCC---------CeEEEEeCCHH
Confidence 79999999986664332 332 2348999999999988765544444321 221 23467788887
Q ss_pred c-ccCCcEEEEec
Q 022407 81 D-LHSADIIVEAI 92 (297)
Q Consensus 81 ~-~~~aD~Vi~~v 92 (297)
+ +++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 7 99999999875
No 195
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.89 E-value=9.3e-05 Score=61.70 Aligned_cols=32 Identities=38% Similarity=0.565 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~ 37 (297)
.+|+|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5899999999999999999999985 9999998
No 196
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.89 E-value=6.5e-05 Score=65.55 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=52.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (297)
++|.|||+|-+|++++..|+..|. +|+++||+.++.+.+.+.+.+.. .. ..+...++.. .++
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence 589999999999999999999998 79999999988877644432110 00 0111122323 367
Q ss_pred CCcEEEEecccC
Q 022407 84 SADIIVEAIVES 95 (297)
Q Consensus 84 ~aD~Vi~~v~e~ 95 (297)
++|+||.|+|-.
T Consensus 192 ~aDiVInaTp~G 203 (284)
T PRK12549 192 AADGLVHATPTG 203 (284)
T ss_pred CCCEEEECCcCC
Confidence 899999988743
No 197
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=2.2e-05 Score=67.75 Aligned_cols=69 Identities=32% Similarity=0.344 Sum_probs=52.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||. |.||.+||..|.++|+.|++|... +.++++ ++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------------------------------t~~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------------------------------TRNLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------------------------------CCCHHHHHh
Confidence 78999999 999999999999999999999321 123343 67
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
.||+||.+++.+..++.. +++++++++..
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDv 229 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDV 229 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEe
Confidence 899999999876654443 36777776643
No 198
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.88 E-value=0.00012 Score=61.74 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=54.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
..||.|+|.|.+|.+.|..++..|. ++.++|.++++++...=. .++|. .--...++....|+..-
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MD--------LqH~s-----~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMD--------LQHGS-----AFLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhh--------hcccc-----ccccCCceEecCccccc
Confidence 4689999999999999999888775 899999999876543111 12221 01123556666788888
Q ss_pred cCCcEEEEec
Q 022407 83 HSADIIVEAI 92 (297)
Q Consensus 83 ~~aD~Vi~~v 92 (297)
+++++||.+.
T Consensus 87 a~S~lvIiTA 96 (332)
T KOG1495|consen 87 ANSKLVIITA 96 (332)
T ss_pred CCCcEEEEec
Confidence 9999999876
No 199
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.85 E-value=7.4e-05 Score=64.80 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=37.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
.++|.|+|+|.+|++++..|+..|++|++++|++++.+.+.+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 368999999999999999999999999999999887766543
No 200
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.81 E-value=0.00011 Score=65.60 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=55.4
Q ss_pred CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|.+|...+..|+ ..+. +|++|+|++++.+++.+++.+. .|. .+...++.++
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~------~g~-----------~v~~~~~~~~a 191 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSL------LGI-----------DVTAATDPRAA 191 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhh------cCc-----------eEEEeCCHHHH
Confidence 368999999999999999886 4664 6999999999988775554311 111 1234566665
Q ss_pred ccCCcEEEEecccCH
Q 022407 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
+++||+|+.|.|...
T Consensus 192 v~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 192 MSGADIIVTTTPSET 206 (326)
T ss_pred hccCCEEEEecCCCC
Confidence 889999999997644
No 201
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.80 E-value=0.00069 Score=56.05 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=72.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec---Cccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS---NLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~ 81 (297)
++|.|||+|.+|...+..|.++|.+|++++++.. .+... .+.+. +.+.. ..++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~------------i~~~~~~~~~~~ 67 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGK------------IRWKQKEFEPSD 67 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCC------------EEEEecCCChhh
Confidence 6899999999999999999999999999987542 12211 22232 12211 1234
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~ 159 (297)
+.++|+||.|..+ .++.+.+. +.+..+.+ + |... .|.. ..|+.|.. ..++.--+.+.
T Consensus 68 l~~adlViaaT~d-~elN~~i~----~~a~~~~l-v-n~~d-----------~~~~---~~f~~Pa~~~~g~l~iaIsT~ 126 (202)
T PRK06718 68 IVDAFLVIAATND-PRVNEQVK----EDLPENAL-F-NVIT-----------DAES---GNVVFPSALHRGKLTISVSTD 126 (202)
T ss_pred cCCceEEEEcCCC-HHHHHHHH----HHHHhCCc-E-EECC-----------CCcc---CeEEEeeEEEcCCeEEEEECC
Confidence 8899999988754 44444443 33333333 2 2211 1111 23334432 22333334555
Q ss_pred CChHHHHHHHHHHHHH
Q 022407 160 DTSDETFRATKALAER 175 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~ 175 (297)
+.+|.....++.-++.
T Consensus 127 G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 127 GASPKLAKKIRDELEA 142 (202)
T ss_pred CCChHHHHHHHHHHHH
Confidence 6788777777766655
No 202
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=0.00012 Score=65.25 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=63.1
Q ss_pred CcEEEEECCChhHHHHHHHHH-HCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGV-MDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..++ ..+. +|.+|+|++++.+++.+.++.. .+ -.+...++.++
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~------~~-----------~~~~~~~~~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK------FN-----------TEIYVVNSADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh------cC-----------CcEEEeCCHHHH
Confidence 478999999999998887765 3454 7999999999887775544321 11 11234566665
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
++++|+||.|.|... .++. ..+++++.|.+..+
T Consensus 190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs 222 (325)
T PRK08618 190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS 222 (325)
T ss_pred HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence 789999999998653 2332 34567776654433
No 203
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.80 E-value=4.4e-05 Score=68.66 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=53.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecC---c-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSN---L- 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~- 79 (297)
++|.|||+|.+|+.+|..|+++| ++|++.||+.++.+++..... +.+ ..+.+ ..+ +
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v---------~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKV---------EALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccc---------eeEEecccChHHHH
Confidence 68999999999999999999999 899999999998887732211 011 11111 111 2
Q ss_pred ccccCCcEEEEecccCHH
Q 022407 80 KDLHSADIIVEAIVESED 97 (297)
Q Consensus 80 ~~~~~aD~Vi~~v~e~~~ 97 (297)
+.+++.|+||.|+|-...
T Consensus 64 ~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 64 ALIKDFDLVINAAPPFVD 81 (389)
T ss_pred HHHhcCCEEEEeCCchhh
Confidence 227888999999986554
No 204
>PLN02494 adenosylhomocysteinase
Probab=97.79 E-value=0.0001 Score=67.76 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=60.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+ ...|. .+. ++++ ++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-----------~~~G~-------------~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-----------LMEGY-------------QVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-----------HhcCC-------------eec-cHHHHHhh
Confidence 789999999999999999999999999999998764333 22332 111 3344 778
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
+|+||++..... .+..+.-+.++++++++...
T Consensus 310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcC
Confidence 999998765322 22234445678888777433
No 205
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.77 E-value=0.00015 Score=64.20 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=29.6
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCC--CcEEEEeCC
Q 022407 4 KMKVMGVVGS-GQMGSGIAQLGVMDG--LDVWLVDTD 37 (297)
Q Consensus 4 ~~~~V~iiG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 37 (297)
+++||+|||+ |.+|+.+|..|+..+ .++.++|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 3579999999 999999999999655 589999993
No 206
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.77 E-value=0.00032 Score=64.43 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=49.5
Q ss_pred cEEEEECCChhHH-HHHHHHHHC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407 6 KVMGVVGSGQMGS-GIAQLGVMD-----GLDVWLVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78 (297)
Q Consensus 6 ~~V~iiG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
+||+|||+|..-. .+...|++. +-+|+++|++ +++++......++..+. .|. .-++..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~---~~~---------~~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKK---AGL---------PIKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHh---hCC---------CeEEEEeCC
Confidence 4899999998733 333445542 3589999999 78876654444433221 121 124667888
Q ss_pred ccc-ccCCcEEEEec
Q 022407 79 LKD-LHSADIIVEAI 92 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v 92 (297)
.++ +.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 876 89999999876
No 207
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.76 E-value=5.4e-05 Score=60.24 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=35.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR 43 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 43 (297)
|||+|||+ |..|+.|+....+.||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 58999999 999999999999999999999999988754
No 208
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.76 E-value=0.00055 Score=63.01 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=50.2
Q ss_pred cEEEEECCChh-HHHHHHHHHH-----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQM-GSGIAQLGVM-----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~m-G~~iA~~l~~-----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.. ...+...|++ .+-+|+++|+++++++......++..++ .|. .-++..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~---~g~---------~~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEE---VGA---------DIKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHh---hCC---------CeEEEEeCCH
Confidence 48999999984 3334444553 3468999999999987744333333221 121 1246778888
Q ss_pred cc-ccCCcEEEEec
Q 022407 80 KD-LHSADIIVEAI 92 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v 92 (297)
++ +++||+||.++
T Consensus 69 ~~Al~gADfVi~~i 82 (425)
T cd05197 69 EDAIIDADFVINQF 82 (425)
T ss_pred HHHhCCCCEEEEee
Confidence 76 99999999775
No 209
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.75 E-value=5.3e-05 Score=69.79 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=50.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||+|.||..++..|...| .+|++++++.++.+...+ +.|. ..+ ..++..+ +.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~----------~~g~----------~~i-~~~~l~~~l~ 239 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAK----------ELGG----------EAV-KFEDLEEYLA 239 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH----------HcCC----------eEe-eHHHHHHHHh
Confidence 68999999999999999999999 789999999887654421 1111 001 1123333 77
Q ss_pred CCcEEEEecccCH
Q 022407 84 SADIIVEAIVESE 96 (297)
Q Consensus 84 ~aD~Vi~~v~e~~ 96 (297)
++|+||.|++...
T Consensus 240 ~aDvVi~aT~s~~ 252 (417)
T TIGR01035 240 EADIVISSTGAPH 252 (417)
T ss_pred hCCEEEECCCCCC
Confidence 8999999986543
No 210
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.74 E-value=0.00057 Score=51.31 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=51.3
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.||+|||+|.+|......+... +.+|. ++|+++++.+.+.+ ..| +...+|.++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~----------~~~-------------~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE----------KYG-------------IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH----------HTT-------------SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH----------Hhc-------------ccchhHHHHH
Confidence 3899999999999999888776 45654 88999988776521 112 236667776
Q ss_pred cc--CCcEEEEecccCHH
Q 022407 82 LH--SADIIVEAIVESED 97 (297)
Q Consensus 82 ~~--~aD~Vi~~v~e~~~ 97 (297)
++ +.|+|+.++|...+
T Consensus 58 l~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSSH 75 (120)
T ss_dssp HHHTTESEEEEESSGGGH
T ss_pred HHhhcCCEEEEecCCcch
Confidence 44 79999999998764
No 211
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.74 E-value=0.00016 Score=64.24 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDG-------LDVWLVDTDPDA--LVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC 75 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
.||+|+|+ |.+|+.++..|+..+ .+|.++|+++.. ++...-.+.+ .. .....+++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d--------~~------~~~~~~~~~ 68 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD--------CA------FPLLKSVVA 68 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh--------cc------ccccCCcee
Confidence 58999999 999999999998854 589999996531 2111000000 00 011123444
Q ss_pred ecCc-ccccCCcEEEEeccc------C-H-------HHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 76 TSNL-KDLHSADIIVEAIVE------S-E-------DVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 76 ~~~~-~~~~~aD~Vi~~v~e------~-~-------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
..++ +++++||+||.+.-- + . .+.+++...+.++++++++++..|+.+++
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANT 133 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHH
Confidence 5564 669999999987521 1 1 12245556677777667766545544443
No 212
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.73 E-value=0.00017 Score=59.30 Aligned_cols=92 Identities=24% Similarity=0.384 Sum_probs=58.0
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
++|++||||.+|..+...+-.. .+ -|.+||++.+++..+.+. .+ . ...+++++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------~~-----------~--~~~s~ide~ 57 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------VG-----------R--RCVSDIDEL 57 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------cC-----------C--CccccHHHH
Confidence 4799999999999998776543 24 477999999987665211 11 1 23367777
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+++.|+++||..-+ .+++-+.+.|++ .-+.|+. ++..+.
T Consensus 58 ~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~-SVGALa 96 (255)
T COG1712 58 IAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVM-SVGALA 96 (255)
T ss_pred hhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEE-echhcc
Confidence 69999999998532 223323222333 2245555 455555
No 213
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.72 E-value=0.00055 Score=63.18 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred cEEEEECCChh-HHHHHHHHHHC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc
Q 022407 6 KVMGVVGSGQM-GSGIAQLGVMD-----GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 79 (297)
+||+|||+|.. +..+...|++. +-+|+++|+++++++......++. .++.. ..-++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~----~~~~g--------~~~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKIL----FKENY--------PEIKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHH----HHhhC--------CCeEEEEECCH
Confidence 58999999985 22344445433 458999999999887744333333 32211 11246778888
Q ss_pred cc-ccCCcEEEEec
Q 022407 80 KD-LHSADIIVEAI 92 (297)
Q Consensus 80 ~~-~~~aD~Vi~~v 92 (297)
.+ +++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 76 99999999775
No 214
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.72 E-value=0.00017 Score=63.56 Aligned_cols=91 Identities=11% Similarity=0.160 Sum_probs=61.9
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..+.. .+. +|.+|+|++++.+++.+++++ .+. .+. .++.++
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a 185 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI 185 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence 4789999999999999999864 564 799999999988876544321 110 112 345554
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+.++|+||.|.|....+ +. ..+++++.|....+
T Consensus 186 v~~aDiVitaT~s~~Pl----~~---~~~~~g~hi~~iGs 218 (304)
T PRK07340 186 PEAVDLVVTATTSRTPV----YP---EAARAGRLVVAVGA 218 (304)
T ss_pred hhcCCEEEEccCCCCce----eC---ccCCCCCEEEecCC
Confidence 88999999999865532 22 13466665554333
No 215
>PRK05086 malate dehydrogenase; Provisional
Probab=97.70 E-value=0.00028 Score=62.42 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=58.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHH---CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecC-
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVM---DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSN- 78 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~- 78 (297)
+||+|||+ |.+|+.++..+.. .+++++++|+++.. +.. .++ .... .....++. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~------alD--l~~~--------~~~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGV------AVD--LSHI--------PTAVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cce------ehh--hhcC--------CCCceEEEeCCCCH
Confidence 58999999 9999999998854 35689999998542 110 000 0100 00112222 345
Q ss_pred cccccCCcEEEEeccc--C-----HH-------HHHHHHHHHHhhccCCeEEeecCCCc
Q 022407 79 LKDLHSADIIVEAIVE--S-----ED-------VKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e--~-----~~-------~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
.++++++|+||.|.-. + .+ +.+++...+.++. ++.+++..|...
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsNP~ 121 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITNPV 121 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 4568999999998732 1 11 3344555566664 455555444444
No 216
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.68 E-value=8.9e-05 Score=68.48 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=50.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||+|.||..++..|...|. +|+++++++++.+.+.+. .|. .....++..+ +.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~----------~g~-----------~~~~~~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE----------FGG-----------EAIPLDELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH----------cCC-----------cEeeHHHHHHHhc
Confidence 689999999999999999999997 799999999876654211 111 0111123333 67
Q ss_pred CCcEEEEecccCH
Q 022407 84 SADIIVEAIVESE 96 (297)
Q Consensus 84 ~aD~Vi~~v~e~~ 96 (297)
++|+||.|++.+.
T Consensus 242 ~aDvVI~aT~s~~ 254 (423)
T PRK00045 242 EADIVISSTGAPH 254 (423)
T ss_pred cCCEEEECCCCCC
Confidence 8999999987544
No 217
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.68 E-value=0.00022 Score=62.17 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=51.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-cccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-KDLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~ 83 (297)
++|.|+|+|.+|++++..|+..| .+|++++|+.++++.+.+.+.. .+ .+.+..+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence 68999999999999999999999 6899999999887766433210 00 01121122 3367
Q ss_pred CCcEEEEecccCH
Q 022407 84 SADIIVEAIVESE 96 (297)
Q Consensus 84 ~aD~Vi~~v~e~~ 96 (297)
++|+||.|+|-..
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999997544
No 218
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.67 E-value=0.00027 Score=62.19 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|.+|...+..++. ..+ +|.+|+|++++.+++.+++++.+ | -.+...++.++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHH
Confidence 35789999999999988887665 233 79999999999888765554211 1 12455667766
Q ss_pred -ccCCcEEEEecccCH
Q 022407 82 -LHSADIIVEAIVESE 96 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~ 96 (297)
+++||+|+.+.+...
T Consensus 179 av~~aDIV~taT~s~~ 194 (301)
T PRK06407 179 ALRDADTITSITNSDT 194 (301)
T ss_pred HHhcCCEEEEecCCCC
Confidence 899999999987644
No 219
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.67 E-value=0.00033 Score=53.00 Aligned_cols=98 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred EEEEECC-ChhHHHHHHHHHHC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc--
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMD-GLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-- 81 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 81 (297)
||+|+|+ |.+|..++..+... ++++..+ +++.+..+.+.. ..+.+. ..+...-+.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~----------~~~~~~--------~~~~~~~~~~~~~ 62 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSE----------AGPHLK--------GEVVLELEPEDFE 62 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHH----------HCcccc--------cccccccccCChh
Confidence 5899995 99999999999884 8887765 654322222100 000000 00000111122
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
..++|+||.|+|.+... ++...+.+.+.++++++..++++.
T Consensus 63 ~~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 63 ELAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred hcCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence 24899999999987653 333333445577888887777654
No 220
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.65 E-value=0.00018 Score=64.25 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=54.8
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM-DG-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..+.. .+ .+|++|+|++++.+++.+.+++.+ | -.+...+++++
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~a 194 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEA 194 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHH
Confidence 3689999999999998888775 45 579999999999887755443211 1 11234566655
Q ss_pred ccCCcEEEEecccCH
Q 022407 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
+++||+|+.|.|...
T Consensus 195 l~~aDiVi~aT~s~~ 209 (330)
T PRK08291 195 VAGADIIVTTTPSEE 209 (330)
T ss_pred HccCCEEEEeeCCCC
Confidence 789999999987643
No 221
>PLN00203 glutamyl-tRNA reductase
Probab=97.62 E-value=0.00011 Score=69.02 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=56.7
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.++|+|||+|.||..++..|...|. +|++++|+.++.+.+.+.. .+. . -.+...++..+ +
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~---------~g~-~--------i~~~~~~dl~~al 327 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF---------PDV-E--------IIYKPLDEMLACA 327 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh---------CCC-c--------eEeecHhhHHHHH
Confidence 3689999999999999999999997 6999999998877652211 010 0 00111233333 7
Q ss_pred cCCcEEEEecccCH-HHHHHHHHHHH
Q 022407 83 HSADIIVEAIVESE-DVKKKLFSELD 107 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~-~~k~~~~~~l~ 107 (297)
.++|+||.|++... .+..+.++.+.
T Consensus 328 ~~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 328 AEADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred hcCCEEEEccCCCCCeeCHHHHHHhh
Confidence 89999999975433 23445555543
No 222
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.59 E-value=0.00034 Score=67.01 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--ccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--DLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~ 83 (297)
.+|.|+|+|.+|+.+|..|.+.|++|+++|.|+++.+.+ .+.|.. ...+..+-.+.++ .++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-----------~~~g~~------~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-----------RERGIR------AVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-----------HHCCCe------EEEcCCCCHHHHHhcCcc
Confidence 478999999999999999999999999999999988776 222321 0000000001112 267
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
+||.++.+++++.+.. .+...+.+..+.-.+++..
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARA 515 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence 8999999998876543 2333344444444566543
No 223
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.59 E-value=0.0017 Score=48.41 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=59.9
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc------c-
Q 022407 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL------K- 80 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~------~- 80 (297)
|.|+|+|.+|..++..|.+.+.+|+++|.+++..+.+ .+.|.. ....|. +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-----------~~~~~~------------~i~gd~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-----------REEGVE------------VIYGDATDPEVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-----------HHTTSE------------EEES-TTSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-----------Hhcccc------------cccccchhhhHHhh
Confidence 5799999999999999999777999999999988776 344420 111221 1
Q ss_pred -cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 81 -DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 81 -~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
.+.+|+.||.+.+++.. ...+...+.+..+.-.+++...
T Consensus 58 a~i~~a~~vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 58 AGIEKADAVVILTDDDEE-NLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp TTGGCESEEEEESSSHHH-HHHHHHHHHHHTTTSEEEEEES
T ss_pred cCccccCEEEEccCCHHH-HHHHHHHHHHHCCCCeEEEEEC
Confidence 26789999999886643 3334344555555556666433
No 224
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.59 E-value=0.00056 Score=60.55 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=63.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
..++++|||+|.++...+..+... -.+|++|+|++++.+++.+.+++ .+ -.+...++.++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~ 188 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAE 188 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHH
Confidence 357899999999999998876642 34899999999998877544321 11 12345666665
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.+....+ |. .+++++++.|....+
T Consensus 189 av~~ADIV~taT~s~~P~----~~--~~~l~~G~hi~~iGs 223 (315)
T PRK06823 189 VAHAANLIVTTTPSREPL----LQ--AEDIQPGTHITAVGA 223 (315)
T ss_pred HhcCCCEEEEecCCCCce----eC--HHHcCCCcEEEecCC
Confidence 89999999998754422 21 134566766654433
No 225
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.59 E-value=0.00032 Score=63.93 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=34.0
Q ss_pred cEEEEECCChhHHHH-HHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGI-AQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|||.++|+|.||++. +..|.++|++|+++|++++.++++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL 40 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDAL 40 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 479999999999855 778899999999999988877665
No 226
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.58 E-value=0.00035 Score=67.42 Aligned_cols=99 Identities=20% Similarity=0.158 Sum_probs=66.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--ccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--DLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~ 83 (297)
.+|.|+|.|.+|..++..|.+.|++++++|.|+++++.+ .+.|.. ...+..+-.+.++ .+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-----------~~~g~~------v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-----------RKYGYK------VYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-----------HhCCCe------EEEeeCCCHHHHHhcCCc
Confidence 579999999999999999999999999999999988776 223321 0000000001112 267
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSS 122 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~ 122 (297)
+||.+|.+++++... ..+...+.+..++-.|++...+.
T Consensus 464 ~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 464 KAEAIVITCNEPEDT-MKIVELCQQHFPHLHILARARGR 501 (601)
T ss_pred cCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEEeCCH
Confidence 899999999876543 33444556666666677755443
No 227
>PRK06046 alanine dehydrogenase; Validated
Probab=97.58 E-value=0.00037 Score=62.13 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=61.5
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++|+|||+|.+|...+..++. .+. .|.+||+++++.+++.+.+++. .+ ..+...++.++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------~~-----------~~v~~~~~~~~~ 191 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------VG-----------CDVTVAEDIEEA 191 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------cC-----------ceEEEeCCHHHH
Confidence 4789999999999999988874 343 6889999999888775543211 01 11344566666
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
++ +|+|+.|.|....+ |. .+++++++.|.+..+
T Consensus 192 l~-aDiVv~aTps~~P~----~~--~~~l~~g~hV~~iGs 224 (326)
T PRK06046 192 CD-CDILVTTTPSRKPV----VK--AEWIKEGTHINAIGA 224 (326)
T ss_pred hh-CCEEEEecCCCCcE----ec--HHHcCCCCEEEecCC
Confidence 55 99999999864422 11 134566666654433
No 228
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00044 Score=61.19 Aligned_cols=95 Identities=15% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
....++|||+|.++......+.. . .-+|.+|+|+++..++...++++. +. ..+...++.++
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~-------~~----------~~v~a~~s~~~ 191 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKR-------GG----------EAVGAADSAEE 191 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhh-------cC----------ccceeccCHHH
Confidence 35789999999999999888765 2 348999999999988875544322 11 12345666665
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.|.+..+. ..+++++++-|....+
T Consensus 192 av~~aDiIvt~T~s~~Pil------~~~~l~~G~hI~aiGa 226 (330)
T COG2423 192 AVEGADIVVTATPSTEPVL------KAEWLKPGTHINAIGA 226 (330)
T ss_pred HhhcCCEEEEecCCCCCee------cHhhcCCCcEEEecCC
Confidence 899999999998765321 1245567776654443
No 229
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.56 E-value=0.00029 Score=60.61 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=46.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
+||+|+|+ |.||..++..+.+ .++++. ++|+++++.... .. ..+...+++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 58999999 9999999988876 467766 588887643221 00 11234566665
Q ss_pred ccCCcEEEEecccCH
Q 022407 82 LHSADIIVEAIVESE 96 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~ 96 (297)
++++|+||++.+.+.
T Consensus 58 l~~~DvVid~t~p~~ 72 (257)
T PRK00048 58 LADADVLIDFTTPEA 72 (257)
T ss_pred ccCCCEEEECCCHHH
Confidence 568999998886444
No 230
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.56 E-value=0.00027 Score=61.64 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=36.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 46 (297)
+++.|||+|-+|++++..|+..|. +|++++|+.++.+++.+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 589999999999999999999997 69999999988777643
No 231
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.54 E-value=0.00013 Score=60.04 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=36.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
+++.|+|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 68999996 9999999999999999999999998877665433
No 232
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.54 E-value=0.00025 Score=66.39 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=51.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++++|+|+|.+|.+++..|++.|++|++++++.++.+.+.+... +. .....+..++.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~---------~~------------~~~~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ---------GK------------AFPLESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------cc------------eechhHhcccCCC
Confidence 68999999999999999999999999999999887665422110 00 0011223335789
Q ss_pred cEEEEecccCH
Q 022407 86 DIIVEAIVESE 96 (297)
Q Consensus 86 D~Vi~~v~e~~ 96 (297)
|+||.|+|...
T Consensus 392 DiVInatP~g~ 402 (477)
T PRK09310 392 DIIINCLPPSV 402 (477)
T ss_pred CEEEEcCCCCC
Confidence 99999998765
No 233
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.53 E-value=0.0032 Score=53.44 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=74.9
Q ss_pred eEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHH---HhhhcCC-CCeEEEeecCCCC
Q 022407 73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITR---LASATSR-PCQVIGMHFMNPP 147 (297)
Q Consensus 73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~---l~~~~~~-~~~~~g~h~~~p~ 147 (297)
++++ +|.+.++++|++|...|.... ...+++++.+.+++++||+ +|.++++.. +.+.+.+ ...+..+||-.-|
T Consensus 127 vkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVP 204 (340)
T TIGR01723 127 LKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCVP 204 (340)
T ss_pred ceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCCC
Confidence 3444 455669999999999986552 2467888889999999887 677777653 3344443 2345556665444
Q ss_pred CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
..-..+=++.+ -.+++.++++..+.+..++.++.+.
T Consensus 205 gt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 205 EMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecc
Confidence 33333334444 3678899999999999999998773
No 234
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.53 E-value=0.00039 Score=57.57 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=30.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 589999999999999999999998 899999873
No 235
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.52 E-value=0.00018 Score=57.55 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=30.8
Q ss_pred cEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~m-G~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.| |..+|..|.+.|.+|++.+++.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 78999999997 88899999999999999998743
No 236
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.51 E-value=0.0033 Score=53.26 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=73.8
Q ss_pred eEEe-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhh---cCC-CCeEEEeecCCCC
Q 022407 73 LRCT-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASA---TSR-PCQVIGMHFMNPP 147 (297)
Q Consensus 73 i~~~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~---~~~-~~~~~g~h~~~p~ 147 (297)
++++ +|.+.++++|++|...|-... ...+++++.+.+++++||+ +|.++++..+... +.+ ...+..+||-.-|
T Consensus 129 vkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVP 206 (342)
T PRK00961 129 LKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVP 206 (342)
T ss_pred ceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCCC
Confidence 3444 455669999999999986552 2467888889999999887 7777777544433 332 2335555655444
Q ss_pred CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
..-+.+-+-. .-.+++.++++..+.+..++.++.+.
T Consensus 207 gt~Gq~~i~e-gyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 207 EMKGQVYIAE-GYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCCCceeccc-ccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 3222222222 23688999999999999999998773
No 237
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.51 E-value=0.0012 Score=54.71 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=73.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-c--Cccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-S--NLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~ 81 (297)
++|.|||.|.+|..-+..|++.|.+|++++.+.. .+.. +.+.|. +.+. . ...+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~------------i~~~~~~~~~~d 66 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGG------------ITWLARCFDADI 66 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCC------------EEEEeCCCCHHH
Confidence 6899999999999999999999999999987654 1111 233333 2221 1 2234
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~ 159 (297)
+.++|+||.+.. +.++...+... +....+++...+.+ +. ..|+.|.. ..++.--+.+.
T Consensus 67 l~~~~lVi~at~-d~~ln~~i~~~----a~~~~ilvn~~d~~------------e~---~~f~~pa~~~~g~l~iaisT~ 126 (205)
T TIGR01470 67 LEGAFLVIAATD-DEELNRRVAHA----ARARGVPVNVVDDP------------EL---CSFIFPSIVDRSPVVVAISSG 126 (205)
T ss_pred hCCcEEEEECCC-CHHHHHHHHHH----HHHcCCEEEECCCc------------cc---CeEEEeeEEEcCCEEEEEECC
Confidence 889999998754 44444444443 33323333222111 10 12334432 22333335555
Q ss_pred CChHHHHHHHHHHHHHh
Q 022407 160 DTSDETFRATKALAERF 176 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~l 176 (297)
+.+|.....++.-++.+
T Consensus 127 G~sP~la~~lr~~ie~~ 143 (205)
T TIGR01470 127 GAAPVLARLLRERIETL 143 (205)
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 67777777766665553
No 238
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.50 E-value=0.00064 Score=57.89 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=44.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCC---CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG---LDV-WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G---~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|||+|.||..++..+...+ +++ .++++++++.+.. ... ....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~-----------~~~--------------~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL-----------AGR--------------VALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh-----------hcc--------------CcccCCHHH
Confidence 58999999999999999986542 444 4678887655443 111 235566776
Q ss_pred --ccCCcEEEEecc
Q 022407 82 --LHSADIIVEAIV 93 (297)
Q Consensus 82 --~~~aD~Vi~~v~ 93 (297)
...+|+|+||..
T Consensus 58 ll~~~~DlVVE~A~ 71 (267)
T PRK13301 58 LLAWRPDLVVEAAG 71 (267)
T ss_pred HhhcCCCEEEECCC
Confidence 367999999985
No 239
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.50 E-value=0.00023 Score=62.97 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=54.7
Q ss_pred CcEEEEECCChhHHHHHHHHHH-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM-DGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|..+..-+..++. .+. +|.+|+|++++.+++.+++++ .+ -.+...++.++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~a 189 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEA 189 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhh
Confidence 4689999999999998887654 444 799999999988887555432 11 23456677766
Q ss_pred ccCCcEEEEecccCH--HHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESE--DVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~--~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.+... .+ +. .+++++++.|....+
T Consensus 190 v~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs 225 (313)
T PF02423_consen 190 VRGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGS 225 (313)
T ss_dssp HTTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-
T ss_pred cccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecC
Confidence 899999999987654 22 11 235667776664444
No 240
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.002 Score=56.41 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=82.3
Q ss_pred CcEEEEECCChhHHHHHHHHH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
.-|||+||+|.||+.|+...+ -.|.+|. +-|++.+...++.++.-..-...++.-..+.-......+++.+++|.+.+
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 358999999999999998865 4799877 45788776655533211000000010000000111122456677777663
Q ss_pred ---cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC-----CccHHHHhhhcCCCCeEEEeecCCCCCCCccee
Q 022407 83 ---HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS-----SISITRLASATSRPCQVIGMHFMNPPPLMKLVE 154 (297)
Q Consensus 83 ---~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts-----~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve 154 (297)
..-|+||++.--...--+..+..|. ....++..|.- +.-..+.+..+ |. .
T Consensus 97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~Ad~~-------Gv------------i 154 (438)
T COG4091 97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQADAA-------GV------------I 154 (438)
T ss_pred hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHHHhhc-------Ce------------E
Confidence 4568889876432221222233332 33445544431 11112222221 11 1
Q ss_pred EecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 155 VIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 155 v~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
...+.+..|...-.+.+|.+++|.+++..+
T Consensus 155 yS~~~GDeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 155 YSGGAGDEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred EeccCCCCcHHHHHHHHHHHhcCCeEEecc
Confidence 222334556677777888888999888764
No 241
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.49 E-value=0.00064 Score=60.75 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
++|.|||+|.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 589999999999999999999998 899999985
No 242
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.48 E-value=0.01 Score=52.63 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=87.1
Q ss_pred cEEEEECCChhHHHHHHHHHH-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc---cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVM-DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL---KD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~---~~ 81 (297)
++|+|+|+|-+|. ||..+++ .|.+|+.+|+++++++.+ .+.|+- .+....+. +.
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~ga~Via~~~~~~K~e~a-----------~~lGAd----------~~i~~~~~~~~~~ 225 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAMGAEVIAITRSEEKLELA-----------KKLGAD----------HVINSSDSDALEA 225 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHcCCeEEEEeCChHHHHHH-----------HHhCCc----------EEEEcCCchhhHH
Confidence 6899999997775 5555665 799999999999998876 444431 11111111 12
Q ss_pred cc-CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCC-CCCcceeEecCC
Q 022407 82 LH-SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP-PLMKLVEVIRGA 159 (297)
Q Consensus 82 ~~-~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~-~~~~~vev~~~~ 159 (297)
++ .+|++|++++ +..+. ..+.-+.+.++++...--. .. .... +.+. .+.....|..+.
T Consensus 226 ~~~~~d~ii~tv~-~~~~~----~~l~~l~~~G~~v~vG~~~--~~----------~~~~---~~~~~li~~~~~i~GS~ 285 (339)
T COG1064 226 VKEIADAIIDTVG-PATLE----PSLKALRRGGTLVLVGLPG--GG----------PIPL---LPAFLLILKEISIVGSL 285 (339)
T ss_pred hHhhCcEEEECCC-hhhHH----HHHHHHhcCCEEEEECCCC--Cc----------ccCC---CCHHHhhhcCeEEEEEe
Confidence 22 2888888887 44322 2233333445544311100 00 0000 0000 122335566666
Q ss_pred CChHHHHHHHHHHHHHhCCeEEEeccchhhhHHHHHHHHHHHHHHHHHcCC
Q 022407 160 DTSDETFRATKALAERFGKTVVCSQDYAGFIVNRILMPMINEAFFTLYTGV 210 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~nri~~~~~~Ea~~l~~~g~ 210 (297)
.++....+.+.+|...-+-+|.+....+ ..-+|||+.-+++|-
T Consensus 286 ~g~~~d~~e~l~f~~~g~Ikp~i~e~~~--------l~~in~A~~~m~~g~ 328 (339)
T COG1064 286 VGTRADLEEALDFAAEGKIKPEILETIP--------LDEINEAYERMEKGK 328 (339)
T ss_pred cCCHHHHHHHHHHHHhCCceeeEEeeEC--------HHHHHHHHHHHHcCC
Confidence 6677778888888888777776641111 223778888777764
No 243
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.46 E-value=0.00028 Score=63.97 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=36.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCC-CcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~ 45 (297)
++|.|||+|-||...|.+|+.+| .+|++.+|+.+++..+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La 219 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA 219 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 68999999999999999999999 58999999999887763
No 244
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.44 E-value=0.0008 Score=62.75 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=36.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999987765
No 245
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.43 E-value=0.00036 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.8
Q ss_pred EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407 8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR 43 (297)
Q Consensus 8 V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 43 (297)
|.|+|+ |.+|..++..|.+.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 789997 999999999999999999999999986543
No 246
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.43 E-value=0.00072 Score=51.08 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=55.8
Q ss_pred EEEEEC-CChhHHHHHHHHHHC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Ccccc
Q 022407 7 VMGVVG-SGQMGSGIAQLGVMD-GLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKDL 82 (297)
Q Consensus 7 ~V~iiG-~G~mG~~iA~~l~~~-G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~ 82 (297)
||+||| .|.+|..+...|+++ .++ +.++.++.+.-..... . .. .......+.+.+ +.+++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~----~----~~--------~~~~~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE----V----FP--------HPKGFEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH----T----TG--------GGTTTEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh----h----cc--------ccccccceeEeecchhHh
Confidence 799999 799999999999985 334 4466666521111100 0 00 000012233433 44558
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
.++|+||.|+|... ..++..++ .+.+..++.+++..
T Consensus 65 ~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp TTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred hcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence 99999999998654 33444433 45677777777755
No 247
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.41 E-value=0.0044 Score=60.79 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=70.9
Q ss_pred EEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc--HHHHhhhcCC-CCeEEEeecCCCCCCCc------------c
Q 022407 88 IVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS--ITRLASATSR-PCQVIGMHFMNPPPLMK------------L 152 (297)
Q Consensus 88 Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~--~~~l~~~~~~-~~~~~g~h~~~p~~~~~------------~ 152 (297)
||.|+|- .....++.++.+++++++++...+|.-. .+.+.+.++. ..+|+|.||+..+...+ .
T Consensus 1 vila~Pv--~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPV--AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCH--HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 5788874 4466888999999999998875555432 3555555543 35799999998775443 2
Q ss_pred eeEecCCCChHHHHHHHHHHHHHhCCeEEEec
Q 022407 153 VEVIRGADTSDETFRATKALAERFGKTVVCSQ 184 (297)
Q Consensus 153 vev~~~~~~~~~~~~~~~~l~~~lG~~~v~~~ 184 (297)
+-+++...++++.++++.++++.+|.+++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55777778899999999999999999988774
No 248
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.40 E-value=0.00033 Score=64.23 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=50.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc-ccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK-DLH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (297)
++|.|||+|.||..++..|+..|. ++++++|+.++.+.+.+.+ +. ......+++. .+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~----------~~----------~~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF----------RN----------ASAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh----------cC----------CeEecHHHHHHHhc
Confidence 689999999999999999999996 7999999988776653221 10 0011223333 378
Q ss_pred CCcEEEEecccCH
Q 022407 84 SADIIVEAIVESE 96 (297)
Q Consensus 84 ~aD~Vi~~v~e~~ 96 (297)
++|+||.|++.+.
T Consensus 242 ~aDiVI~aT~a~~ 254 (414)
T PRK13940 242 KADIIIAAVNVLE 254 (414)
T ss_pred cCCEEEECcCCCC
Confidence 8999999886533
No 249
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.38 E-value=0.0004 Score=62.96 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=35.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 579999999999999999999999999999998876654
No 250
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.33 E-value=0.0018 Score=56.06 Aligned_cols=73 Identities=15% Similarity=0.320 Sum_probs=44.4
Q ss_pred cEEEEEC-CChhHHHHHHHHHH-CCCcEE-EEeCC-HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVG-SGQMGSGIAQLGVM-DGLDVW-LVDTD-PDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
+||+|+| +|.||..++..+.. .++++. ++|++ ++....- ... . .+. ....+.+++++++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~-------~~~-~-~~~--------~~~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTD-------AGE-L-AGI--------GKVGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCC-------HHH-h-cCc--------CcCCceeeCCHHH
Confidence 5899999 59999999999886 578766 67843 3221100 000 0 010 0011345677766
Q ss_pred c-cCCcEEEEecccC
Q 022407 82 L-HSADIIVEAIVES 95 (297)
Q Consensus 82 ~-~~aD~Vi~~v~e~ 95 (297)
+ ..+|+||++.+.+
T Consensus 65 l~~~~DvVIdfT~p~ 79 (266)
T TIGR00036 65 VETDPDVLIDFTTPE 79 (266)
T ss_pred hcCCCCEEEECCChH
Confidence 4 4689999998643
No 251
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.32 E-value=0.0018 Score=57.94 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=62.4
Q ss_pred CcEEEEECCChhHHHHHHHHHH-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVM-D-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.++++|||+|..+...+..++. . =.+|++|+|++++.+++.+++++ .+ -.+...++.++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~a 190 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEA 190 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHH
Confidence 4789999999999888766543 2 34899999999998887555432 11 12455677776
Q ss_pred ccCCcEEEEecccCH---HHHHHHHHHHHhhccCCeEEeecCC
Q 022407 82 LHSADIIVEAIVESE---DVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~---~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
+++||+|+.|.+... -++. +++++++-|....|
T Consensus 191 v~~ADIIvtaT~S~~~~Pvl~~-------~~lkpG~hV~aIGs 226 (346)
T PRK07589 191 VEGADIITTVTADKTNATILTD-------DMVEPGMHINAVGG 226 (346)
T ss_pred HhcCCEEEEecCCCCCCceecH-------HHcCCCcEEEecCC
Confidence 899999999997432 1222 34567765553333
No 252
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.31 E-value=0.0012 Score=63.97 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=63.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC---cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN---LK 80 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---~~ 80 (297)
.+|-|+|+|.+|..+|..|.+.|++++++|.|+++++.++ +.|.. +-.. ++ ++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~-----------~~g~~-----------v~~GDat~~~~L~ 458 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR-----------KFGMK-----------VFYGDATRMDLLE 458 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH-----------hcCCe-----------EEEEeCCCHHHHH
Confidence 5799999999999999999999999999999999888762 22320 1111 11 12
Q ss_pred --cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 81 --DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 81 --~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
.+++||.+|.++.++... ..+...+.+..++-.+++...
T Consensus 459 ~agi~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 459 SAGAAKAEVLINAIDDPQTS-LQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred hcCCCcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEEEEEC
Confidence 267899999999765543 334344555555555666443
No 253
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.31 E-value=0.0013 Score=58.89 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 589999999999999999999999 899999874
No 254
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.00075 Score=61.26 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCcEEEEECCChhHHHHHHHHHH-C-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVM-D-G-LDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~-~-G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
..++++|||+|.++......++. . . -+|.+|+|++++.+++.+++++.+. +. ..+...++.+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~ 218 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIE 218 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHH
Confidence 35789999999999999988776 3 2 3899999999998887655442210 10 1245567776
Q ss_pred c-ccCCcEEEEeccc
Q 022407 81 D-LHSADIIVEAIVE 94 (297)
Q Consensus 81 ~-~~~aD~Vi~~v~e 94 (297)
+ +++||+|+.|.+.
T Consensus 219 eav~~ADIVvtaT~s 233 (379)
T PRK06199 219 EVVRGSDIVTYCNSG 233 (379)
T ss_pred HHHcCCCEEEEccCC
Confidence 6 8999999998864
No 255
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.28 E-value=0.0022 Score=59.77 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=36.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|+|+|.+|..++..|.+.|++|+++|.++++.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~ 270 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL 270 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 4789999999999999999999999999999999987765
No 256
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.24 E-value=0.0015 Score=56.46 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=44.4
Q ss_pred cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL- 82 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 82 (297)
+||+|||+|.||..++..+.+. +.++. +++++.. .+...+. ... .+.+.++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence 5899999999999999998875 56655 3344322 1111000 101 13456666664
Q ss_pred cCCcEEEEecccCHH
Q 022407 83 HSADIIVEAIVESED 97 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~ 97 (297)
.+.|+|++|.+....
T Consensus 60 ~~~DvVve~t~~~~~ 74 (265)
T PRK13303 60 QRPDLVVECAGHAAL 74 (265)
T ss_pred cCCCEEEECCCHHHH
Confidence 568999999986543
No 257
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.23 E-value=0.00089 Score=46.51 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.7
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
||.|||+|..|.-+|..|+..|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987755
No 258
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.21 E-value=0.0022 Score=50.82 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
++|.|||+|.+|...+..|.+.|++|++++..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 68999999999999999999999999999643
No 259
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.18 E-value=0.0039 Score=55.88 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=48.9
Q ss_pred cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhc-ccCCceEEecCccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGT-DAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~- 81 (297)
.||+|+|+|.||..++..+... +++|. +.|++++..+.+.++. .++ -.+.. ++... .....+.+..++++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~---~~~~~-~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYP---LYVAD-PEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCC---ccccC-ccccccccCCceEEcCChhHh
Confidence 5899999999999999887754 66766 5566654333321110 000 00000 00000 00123455566665
Q ss_pred ccCCcEEEEecccCHH
Q 022407 82 LHSADIIVEAIVESED 97 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~ 97 (297)
..++|+||+|.+....
T Consensus 76 ~~~vDVVIdaT~~~~~ 91 (341)
T PRK04207 76 LEKADIVVDATPGGVG 91 (341)
T ss_pred hccCCEEEECCCchhh
Confidence 5789999999986553
No 260
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.18 E-value=0.0027 Score=59.58 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=36.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
-.+|.|+|+|.+|...+..+...|.+|+++|+++++++.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a 204 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV 204 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3689999999999998888888999999999999988876
No 261
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0017 Score=56.31 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~ 48 (297)
++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 689999999999999999999995 7999999999988775443
No 262
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.15 E-value=0.0035 Score=54.06 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=51.4
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCc---
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNL--- 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 79 (297)
+||++||+|.+-...-...... |..|..+|+++++.+.+++-+++.+. +. .++++. .|.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhcc
Confidence 5999999999976554443333 45688999999988877554442211 11 122332 222
Q ss_pred -ccccCCcEEEEecc--cCHHHHHHHHHHHHhhccCCeEEe
Q 022407 80 -KDLHSADIIVEAIV--ESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 80 -~~~~~aD~Vi~~v~--e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
.+++++|+|+.+.- .+.+-|++++..|.+.++++++++
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 23678999998752 234459999999999999988765
No 263
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.12 E-value=0.0022 Score=49.89 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=29.4
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
+|.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 699999763
No 264
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.11 E-value=0.0031 Score=44.51 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=28.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeC
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDT 36 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~ 36 (297)
.++++|+|+|.+|..++..+.+. +.+|++||+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 36899999999999999999998 678999986
No 265
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.08 E-value=0.0019 Score=56.93 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=45.2
Q ss_pred cEEEEECCChhHHHHHHHHHHC-CCcEE-EEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD-GLDVW-LVDTDP-DALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~-G~~V~-~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
.||+|+|+|.||..++..+.+. ++++. ++|+++ +.+.. ..+. ....+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~-------------~~~v-------------~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT-------------ETPV-------------YAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh-------------cCCc-------------cccCCHHHh
Confidence 6999999999999999888765 78877 679985 32210 0011 11223333
Q ss_pred ccCCcEEEEecccCHH
Q 022407 82 LHSADIIVEAIVESED 97 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~ 97 (297)
+.++|+|+.|.|...+
T Consensus 58 l~~iDVViIctPs~th 73 (324)
T TIGR01921 58 LDDVDVLILCMGSATD 73 (324)
T ss_pred ccCCCEEEEcCCCccC
Confidence 5789999999987665
No 266
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.08 E-value=0.0029 Score=47.42 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=52.6
Q ss_pred cEEEEEC----CChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVG----SGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
++|+||| -+..|..+..+|.++|++|+.++...+.+ ..+.+..++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 5799999 58899999999999999999998765322 12356677776
Q ss_pred c-cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 82 L-HSADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 ~-~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
. ...|+++.++|.+. ..++++++.+.-.+..++.
T Consensus 52 ~p~~iDlavv~~~~~~--~~~~v~~~~~~g~~~v~~~ 86 (116)
T PF13380_consen 52 IPEPIDLAVVCVPPDK--VPEIVDEAAALGVKAVWLQ 86 (116)
T ss_dssp CSST-SEEEE-S-HHH--HHHHHHHHHHHT-SEEEE-
T ss_pred CCCCCCEEEEEcCHHH--HHHHHHHHHHcCCCEEEEE
Confidence 4 78999999997433 4566777665533333343
No 267
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.07 E-value=0.0047 Score=53.96 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=55.1
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
|+++ .||+|||+|.+|..+...+.+ .+.++. ++|+++++..... ..+.|.. ...++
T Consensus 1 ~m~k-lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~---------A~~~Gi~------------~~~~~ 58 (302)
T PRK08300 1 MMSK-LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR---------ARRLGVA------------TSAEG 58 (302)
T ss_pred CCCC-CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH---------HHHcCCC------------cccCC
Confidence 4443 589999999999997777765 356665 7899886422110 0222321 11234
Q ss_pred ccc-c-----cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC
Q 022407 79 LKD-L-----HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS 121 (297)
Q Consensus 79 ~~~-~-----~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts 121 (297)
.+. + .+.|+|+++.+...+. +... ...+.++.++.+++
T Consensus 59 ie~LL~~~~~~dIDiVf~AT~a~~H~--e~a~---~a~eaGk~VID~sP 102 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDATSAGAHV--RHAA---KLREAGIRAIDLTP 102 (302)
T ss_pred HHHHHhCcCCCCCCEEEECCCHHHHH--HHHH---HHHHcCCeEEECCc
Confidence 433 2 5689999999865542 2322 23344555555555
No 268
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.06 E-value=0.0015 Score=55.01 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc---EEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLD---VWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~---V~~~d~~ 37 (297)
++|.|+|+|.+|+++|..|...|.. |+++||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 6899999999999999999999985 9999998
No 269
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.028 Score=46.61 Aligned_cols=179 Identities=12% Similarity=0.151 Sum_probs=99.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV-DTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
..|++||.|..|........+.++....+ .+++++.+.+ .+.-.. ..-+.+. ..
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~L-----------aE~~~a-------------~p~d~~~~ae 66 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNL-----------AETYVA-------------PPLDVAKSAE 66 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhc-----------hhccCC-------------CccchhhChh
Confidence 57999999999998776666666655433 4455444332 110000 0111121 33
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC-----CCcc-eeEec
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP-----LMKL-VEVIR 157 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~-----~~~~-vev~~ 157 (297)
-.++||..+|++.- ..+.. ...-.+++|++.++.......+...-....--..+||..-.. ..++ -.++.
T Consensus 67 l~~~vfv~vpd~~~--s~vaa--~~~~rpg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~ 142 (289)
T COG5495 67 LLLLVFVDVPDALY--SGVAA--TSLNRPGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFG 142 (289)
T ss_pred hhceEEecchHHHH--HHHHH--hcccCCCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEE
Confidence 46788888876532 12211 233467899987665555444433322223335567633221 1112 12333
Q ss_pred CCCChHHHHHHHHHHHHHhCCeEEEeccchh-------hhHHHHHHHHHHHHHHHHHcCCCC
Q 022407 158 GADTSDETFRATKALAERFGKTVVCSQDYAG-------FIVNRILMPMINEAFFTLYTGVAT 212 (297)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g-------~i~nri~~~~~~Ea~~l~~~g~~~ 212 (297)
...+|..-...+..+...||.+++.+.+..- -.+.+.+...+.++..+.+..+.+
T Consensus 143 i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D 204 (289)
T COG5495 143 ITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD 204 (289)
T ss_pred eecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 3345555666778899999999998865422 145555667778888888764443
No 270
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.01 E-value=0.00052 Score=62.69 Aligned_cols=37 Identities=35% Similarity=0.592 Sum_probs=31.8
Q ss_pred EEEECCChhHHHHHHHHHHCC-C-cEEEEeCCHHHHHHH
Q 022407 8 MGVVGSGQMGSGIAQLGVMDG-L-DVWLVDTDPDALVRA 44 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~ 44 (297)
|.|+|+|.+|+.++..|++.+ + +|++.||+.+++++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~ 39 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERL 39 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence 789999999999999999886 4 899999999988776
No 271
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.00 E-value=0.03 Score=46.49 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=76.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
++|.|||.|..|..=+..|++.|-+|+++..+. ...+.. +.+.+.+. .+.-.-+.+++.++
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~--------~~~~~~i~---------~~~~~~~~~~~~~~ 73 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKA--------LIEEGKIK---------WIEREFDAEDLDDA 73 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHH--------HHHhcCcc---------hhhcccChhhhcCc
Confidence 689999999999999999999999999998765 222211 13333221 11112233446679
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCCCChH
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGADTSD 163 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~~~~~ 163 (297)
++||.|+. |.++.+.++....+. .+++ |... .|.. ..|+.|.. ..++.--+.+.+.+|
T Consensus 74 ~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~sP 133 (210)
T COG1648 74 FLVIAATD-DEELNERIAKAARER----RILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKSP 133 (210)
T ss_pred eEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCCh
Confidence 99999886 455566665544432 2333 3221 1211 23444442 233443455555677
Q ss_pred HHHHHHHHHHHH
Q 022407 164 ETFRATKALAER 175 (297)
Q Consensus 164 ~~~~~~~~l~~~ 175 (297)
.....++.-.+.
T Consensus 134 ~la~~ir~~Ie~ 145 (210)
T COG1648 134 VLARLLREKIEA 145 (210)
T ss_pred HHHHHHHHHHHH
Confidence 777766665555
No 272
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0035 Score=54.36 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=51.2
Q ss_pred cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|.|||.|. +|.++|..|...|..|+++++....++ +.++.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 7899999988 999999999999999999986532211 12567
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeec
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASN 119 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ 119 (297)
||+||.+++...-+.. .+++++++++..
T Consensus 202 ADIVIsAvg~p~~i~~-------~~vk~gavVIDv 229 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK-------DVVKEGAVIIDV 229 (286)
T ss_pred CCEEEECCCCCcccCH-------HHcCCCcEEEEc
Confidence 9999999975432222 245677776643
No 273
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.99 E-value=0.017 Score=53.88 Aligned_cols=34 Identities=32% Similarity=0.312 Sum_probs=32.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.++|.|+|+|..|..+|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999985
No 274
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.97 E-value=0.0057 Score=61.99 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=51.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMD-GLD-------------VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDA 69 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~-G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 69 (297)
.+++|+|||+|.||...|..|++. +++ |++.|++.++++++.+.. .+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~~--------- 629 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------ENA--------- 629 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CCC---------
Confidence 357999999999999999999875 334 999999988776652210 010
Q ss_pred CCceEE-ecCccc----ccCCcEEEEecccCHH
Q 022407 70 PRRLRC-TSNLKD----LHSADIIVEAIVESED 97 (297)
Q Consensus 70 ~~~i~~-~~~~~~----~~~aD~Vi~~v~e~~~ 97 (297)
..+.. .+|.++ ++++|+||.|+|...+
T Consensus 630 -~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H 661 (1042)
T PLN02819 630 -EAVQLDVSDSESLLKYVSQVDVVISLLPASCH 661 (1042)
T ss_pred -ceEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence 01223 334333 3679999999998664
No 275
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.95 E-value=0.0012 Score=57.57 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=36.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 47 (297)
+++.|+|+|-.+++++..|++.|. +|+++||+.++.+++.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 589999999999999999999997 799999999887776443
No 276
>PRK06153 hypothetical protein; Provisional
Probab=96.92 E-value=0.0037 Score=56.20 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 589999999999999999999998 89999876
No 277
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.91 E-value=0.0016 Score=58.68 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999998 789999875
No 278
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.87 E-value=0.02 Score=47.85 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=72.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-c--Cccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD-ALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-S--NLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~--~~~~ 81 (297)
++|.|||.|.++..=+..|++.|-+|+++...-. .+.. +.+.|.+ ++. . ..++
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~-----------l~~~~~i------------~~~~r~~~~~d 82 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD-----------LKKYGNL------------KLIKGNYDKEF 82 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH-----------HHhCCCE------------EEEeCCCChHH
Confidence 5899999999999999999999999999976432 1221 1333332 222 1 2234
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCC--CCcceeEecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPP--LMKLVEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~--~~~~vev~~~~ 159 (297)
+.++++||.|.. +.++-+.+. ..++...+++.+.... .. ..|+.|.. ..++.--+.+.
T Consensus 83 l~g~~LViaATd-D~~vN~~I~----~~a~~~~~lvn~vd~p------------~~---~dFi~PAiv~rg~l~IaIST~ 142 (223)
T PRK05562 83 IKDKHLIVIATD-DEKLNNKIR----KHCDRLYKLYIDCSDY------------KK---GLCIIPYQRSTKNFVFALNTK 142 (223)
T ss_pred hCCCcEEEECCC-CHHHHHHHH----HHHHHcCCeEEEcCCc------------cc---CeEEeeeEEecCCEEEEEECC
Confidence 889999999875 555444443 3444323333222111 10 22344442 22333334555
Q ss_pred CChHHHHHHHHHHHHH
Q 022407 160 DTSDETFRATKALAER 175 (297)
Q Consensus 160 ~~~~~~~~~~~~l~~~ 175 (297)
+.+|.....++.-++.
T Consensus 143 G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 143 GGSPKTSVFIGEKVKN 158 (223)
T ss_pred CcCcHHHHHHHHHHHH
Confidence 6677766666655544
No 279
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.87 E-value=0.0061 Score=51.46 Aligned_cols=33 Identities=36% Similarity=0.452 Sum_probs=29.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 589999999999999999999998 788997654
No 280
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.86 E-value=0.006 Score=57.22 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=35.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|.+|...+..+...|..|+++|+++++++.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a 203 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 203 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999999999999999999999999999999987665
No 281
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.81 E-value=0.0015 Score=60.00 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.+|.|||+|.+|.++|..|+++|++|+++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999875
No 282
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.81 E-value=0.0061 Score=54.05 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
|||.|.|+ |.+|+.++..|.++||+|++.+|+.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 48999996 9999999999999999999999987643
No 283
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.81 E-value=0.0073 Score=54.71 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 589999999999999999999997 899999873
No 284
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.80 E-value=0.039 Score=45.41 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=69.7
Q ss_pred eEEec-CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhh---hcCCC-CeEEEeecCCCC
Q 022407 73 LRCTS-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLAS---ATSRP-CQVIGMHFMNPP 147 (297)
Q Consensus 73 i~~~~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~---~~~~~-~~~~g~h~~~p~ 147 (297)
+.+++ |-+.+.++|+||..+|..- +...++.++.+.+++++|+. ++.+++.+.+.+ .+.+. -.+-.-|+-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 34444 4455999999999998533 24467777777888898876 677888765444 33332 244555665555
Q ss_pred CCCcceeEecCCCChHHHHHHHHHHHHHhCCeEE
Q 022407 148 PLMKLVEVIRGADTSDETFRATKALAERFGKTVV 181 (297)
Q Consensus 148 ~~~~~vev~~~~~~~~~~~~~~~~l~~~lG~~~v 181 (297)
...+.+-|..|. .++++++.+..+-+......+
T Consensus 205 emkgqvyiaegy-aseeavn~lyelg~karg~af 237 (343)
T COG4074 205 EMKGQVYIAEGY-ASEEAVNALYELGEKARGLAF 237 (343)
T ss_pred cccCcEEEeccc-ccHHHHHHHHHHHHHhhcccc
Confidence 555566666664 688888988877766544443
No 285
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.76 E-value=0.0067 Score=53.02 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
+++.|+|+|-.+++++..|+..|. +|++++|+++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 589999999999999999999987 8999999964
No 286
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.75 E-value=0.025 Score=50.94 Aligned_cols=38 Identities=34% Similarity=0.421 Sum_probs=32.9
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
+|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A 209 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELA 209 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH
Confidence 79999999999987777777775 788889999999877
No 287
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.75 E-value=0.0028 Score=55.49 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~ 38 (297)
+++.|+|+|-.|++++..|+..|.+ |++++|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5789999999999999999999996 99999997
No 288
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.74 E-value=0.0076 Score=54.86 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=30.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~ 37 (297)
.+|.|+|+|..|+.++..|+.+|. +++++|.+
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999998 79999987
No 289
>PRK11579 putative oxidoreductase; Provisional
Probab=96.73 E-value=0.0087 Score=53.82 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=47.9
Q ss_pred CCCCCcEEEEECCChhHHH-HHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec
Q 022407 1 MEEKMKVMGVVGSGQMGSG-IAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS 77 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (297)
|..+ .||+|||+|.+|.. .+..+.. .+.++. ++|+++++... ..+ ...+.+
T Consensus 1 m~~~-irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~ 54 (346)
T PRK11579 1 MSDK-IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVS 54 (346)
T ss_pred CCCc-ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeC
Confidence 5443 58999999999984 4555554 467766 78998764321 111 123566
Q ss_pred Cccc-c--cCCcEEEEecccCHHH
Q 022407 78 NLKD-L--HSADIIVEAIVESEDV 98 (297)
Q Consensus 78 ~~~~-~--~~aD~Vi~~v~e~~~~ 98 (297)
|+++ + .+.|+|+.|+|...+.
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H~ 78 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTHF 78 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHH
Confidence 7776 4 3689999999987753
No 290
>PLN00016 RNA-binding protein; Provisional
Probab=96.70 E-value=0.0089 Score=54.43 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=32.7
Q ss_pred CcEEEEE----CC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 5 MKVMGVV----GS-GQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~V~ii----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.++|.|+ |+ |.+|+.++..|++.||+|++++|++..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 4689999 76 999999999999999999999998764
No 291
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.70 E-value=0.0062 Score=53.70 Aligned_cols=90 Identities=30% Similarity=0.334 Sum_probs=62.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHSA 85 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a 85 (297)
+++.|.|.|..|+++|..+...|-+|.+++.+|-++-++ ..+-+++..-.+.+..+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 678899999999999999999999999999998653222 11223444434457789
Q ss_pred cEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 86 DIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 86 D~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
|++|.+.-....+..+-+. ..++++|++ |.....
T Consensus 266 DifiT~TGnkdVi~~eh~~----~MkDgaIl~-N~GHFd 299 (420)
T COG0499 266 DIFVTATGNKDVIRKEHFE----KMKDGAILA-NAGHFD 299 (420)
T ss_pred CEEEEccCCcCccCHHHHH----hccCCeEEe-cccccc
Confidence 9999988754444333332 356677776 665443
No 292
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.69 E-value=0.019 Score=51.28 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=59.5
Q ss_pred CcEEEEECCChh-HHHHHHHHHHCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc
Q 022407 5 MKVMGVVGSGQM-GSGIAQLGVMDGL---DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK 80 (297)
Q Consensus 5 ~~~V~iiG~G~m-G~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 80 (297)
..||||||+|.+ +...+..+.+.+. -|.++|+++++++...+ +.|. . ...+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~----------~~~~----------~--~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE----------EFGI----------A--KAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH----------HcCC----------C--cccCCHH
Confidence 469999999854 4567778887763 46688999998776522 1121 0 3566777
Q ss_pred c-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 81 D-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 81 ~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
+ ++ +.|+|+.|+|.+.+. ..+...|.. ...+++--.-+.++
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~-e~~~~AL~a---GkhVl~EKPla~t~ 104 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA-ELALAALEA---GKHVLCEKPLALTL 104 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH-HHHHHHHhc---CCEEEEcCCCCCCH
Confidence 6 44 369999999988864 223333332 33466544344444
No 293
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.68 E-value=0.0024 Score=58.41 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.+ ..+|.|||+|..|...|..|+++|++|+++|++++
T Consensus 1 ~~~-~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTK-VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCC-CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 553 36899999999999999999999999999998764
No 294
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.67 E-value=0.002 Score=58.69 Aligned_cols=39 Identities=31% Similarity=0.412 Sum_probs=34.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|++....|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 555545799999999999999999999999999998753
No 295
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.66 E-value=0.01 Score=49.66 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=29.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
++|+|.|+|++|+.+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 699999999999999999999988 566789877
No 296
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.64 E-value=0.014 Score=50.85 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=46.5
Q ss_pred cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.||+|||+|.+|..++..+.+ .++++. ++|+++++..... ..+.|.. ...++.++ +
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~---------A~~~Gi~------------~~~~~~e~ll 60 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR---------ARELGVK------------TSAEGVDGLL 60 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH---------HHHCCCC------------EEECCHHHHh
Confidence 489999999999988777664 466766 6888887532110 0223321 23345554 3
Q ss_pred --cCCcEEEEecccCHH
Q 022407 83 --HSADIIVEAIVESED 97 (297)
Q Consensus 83 --~~aD~Vi~~v~e~~~ 97 (297)
.+.|+|+++.|...+
T Consensus 61 ~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 61 ANPDIDIVFDATSAKAH 77 (285)
T ss_pred cCCCCCEEEECCCcHHH
Confidence 368999999998765
No 297
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.63 E-value=0.0083 Score=52.22 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=30.1
Q ss_pred cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
++|.|||.|. .|+++|..|.+.|..|+++++..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t 193 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT 193 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 6899999997 99999999999999999999743
No 298
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.62 E-value=0.0079 Score=52.10 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=35.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+|-.+++++..|++.|. +|++++|++++.+.+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 479999999999999999999997 599999999877665
No 299
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.61 E-value=0.0095 Score=50.83 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
.+|+|||+|.+|+.++..|+.+|. +++++|.+.-
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 589999999999999999999997 7889987643
No 300
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.61 E-value=0.097 Score=45.76 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=31.9
Q ss_pred CcEEEEECCChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMD-GLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~ 44 (297)
-++|+|+|+|-+|. ||..++++ |++|+++|++..+-+++
T Consensus 182 G~~vgI~GlGGLGh-~aVq~AKAMG~rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGH-MAVQYAKAMGMRVTVISTSSKKKEEA 221 (360)
T ss_pred CcEEEEecCcccch-HHHHHHHHhCcEEEEEeCCchhHHHH
Confidence 37899999988884 88888876 99999999997555544
No 301
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.57 E-value=0.025 Score=44.31 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=26.8
Q ss_pred cEEEEECCChhHHHHHHHHHH-CCCcEE-EEeC-CHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVM-DGLDVW-LVDT-DPDALV 42 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~-~~~~~~ 42 (297)
.||+|+|+|.||+.++..+.. .+.++. +.|+ +++.+.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a 40 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLA 40 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHH
Confidence 379999999999999998775 466655 4563 444433
No 302
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.57 E-value=0.0033 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.0
Q ss_pred EECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 10 VVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 10 iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|||+|.-|...|..|+++|++|+++|++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998753
No 303
>PRK07045 putative monooxygenase; Reviewed
Probab=96.56 E-value=0.0031 Score=57.59 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.4
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
|++...+|.|||+|..|...|..|+++|++|+++++.++.
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 6655568999999999999999999999999999987753
No 304
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.55 E-value=0.01 Score=53.29 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=55.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcc--c
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLK--D 81 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~ 81 (297)
+||+|||+ |.+|..++..|..+ ++++..+-.+.+.-+.+.+ . .+.+. .. ....+ ++.+ .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~------~~~~~-----~~-~~~~~-~~~~~~~ 65 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----V------HPHLR-----GL-VDLVL-EPLDPEI 65 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----h------Ccccc-----cc-cCcee-ecCCHHH
Confidence 68999997 99999999999876 6776544323221111100 0 00000 00 00111 1222 3
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccH
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISI 125 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 125 (297)
..++|+|+.|+|...+ .++..++ ...++.++++++....
T Consensus 66 ~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 66 LAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL 104 (343)
T ss_pred hcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence 5679999999998654 2333333 2356777778876654
No 305
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.54 E-value=0.018 Score=48.74 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
||.|||+|.+|+.++..|+..|+ +++++|.+.=
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 58999999999999999999998 7889988653
No 306
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.0077 Score=56.80 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 68999999999999999999999999999987654
No 307
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.53 E-value=0.0061 Score=52.82 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=51.1
Q ss_pred cEEEEECCChh-HHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQM-GSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||.|.. |.++|..|.+.|..|+++... +.++.+ ++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------------------------------t~~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------------------------------TRDLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------------------------------CCCHHHHhh
Confidence 68999999877 999999999999999987532 223333 67
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.+++...- +.. .+++++++++.
T Consensus 201 ~ADIVV~avG~~~~-----i~~--~~ik~gavVID 228 (285)
T PRK14189 201 QADIVVAAVGKRNV-----LTA--DMVKPGATVID 228 (285)
T ss_pred hCCEEEEcCCCcCc-----cCH--HHcCCCCEEEE
Confidence 89999999984332 221 56778887763
No 308
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.51 E-value=0.01 Score=43.44 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=31.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
-++|.|||.|.+|..=+..|.+.|.+|+++..+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3689999999999999999999999999999886
No 309
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.015 Score=53.13 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=51.8
Q ss_pred CcEEEEECCChhHHHHHHH--HHH----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecC
Q 022407 5 MKVMGVVGSGQMGSGIAQL--GVM----DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSN 78 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~--l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 78 (297)
..||+|||+|..+.+--.. +.+ .+.++.++|+++++++.. ....++++++-. ..-++..++|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g--------~~~kv~~ttd 70 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAG--------APVKVEATTD 70 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhC--------CCeEEEEecC
Confidence 3589999999987664332 222 356899999999987733 333334443321 1244677888
Q ss_pred ccc-ccCCcEEEEec
Q 022407 79 LKD-LHSADIIVEAI 92 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v 92 (297)
.++ +++||+||.++
T Consensus 71 ~~eAl~gAdfVi~~~ 85 (442)
T COG1486 71 RREALEGADFVITQI 85 (442)
T ss_pred HHHHhcCCCEEEEEE
Confidence 876 99999999876
No 310
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.50 E-value=0.0036 Score=57.63 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|+|+|||+|.+|.+.|..|+++|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3799999999999999999999999999999753
No 311
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.0066 Score=56.10 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=32.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
++|.|||.|.+|.++|..|.+.|++|+++|++++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 689999999999999999999999999999887643
No 312
>PRK08223 hypothetical protein; Validated
Probab=96.46 E-value=0.012 Score=51.16 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDAL 41 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~ 41 (297)
.+|.|||+|-+|+.++..|+.+|. +++++|.+.=..
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 589999999999999999999998 788999865333
No 313
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.017 Score=54.43 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=31.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|..|..+|..|++.|++|+++|.++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 6899999999999999999999999999997653
No 314
>PLN03075 nicotianamine synthase; Provisional
Probab=96.45 E-value=0.059 Score=47.03 Aligned_cols=101 Identities=22% Similarity=0.254 Sum_probs=65.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCc--
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNL-- 79 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 79 (297)
.++|..||+|..|..-...++.. +-.++.+|.+++.++.+++.+++. .| ...++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------~g---------L~~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------PD---------LSKRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------cC---------ccCCcEEEECchhh
Confidence 47899999999877554444443 336999999999988886544311 11 11223332 121
Q ss_pred --ccccCCcEEEEeccc--CHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 80 --KDLHSADIIVEAIVE--SEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 80 --~~~~~aD~Vi~~v~e--~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
....+.|+|+..+-- +..-|+.++..+.+.++++.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 124678999987521 12447899999999998888776444
No 315
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.41 E-value=0.014 Score=50.10 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=41.3
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHH
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISS 50 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~ 50 (297)
.+++.|-|+ +-+|..+|..|++.|++|.++.|+.++++++.+++++
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 467888899 9999999999999999999999999999998776654
No 316
>PRK05868 hypothetical protein; Validated
Probab=96.40 E-value=0.0041 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|..|...|..|+++|++|+++|+.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 5799999999999999999999999999998765
No 317
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.37 E-value=0.027 Score=47.49 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=28.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEE-EEeC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVW-LVDT 36 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~-~~d~ 36 (297)
++|+|.|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 689999999999999999999999988 7777
No 318
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.21 Score=43.64 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=35.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
++++|+|+|.+|.+.+.-...+|- +++.+|.|+++.+.+
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a 233 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA 233 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH
Confidence 689999999999999998888886 799999999998877
No 319
>PRK06847 hypothetical protein; Provisional
Probab=96.36 E-value=0.005 Score=55.83 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=33.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.+ .++|.|||+|.-|...|..|++.|++|++++++++
T Consensus 1 m~~-~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAA-VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCC-cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 543 56899999999999999999999999999998754
No 320
>PRK07236 hypothetical protein; Provisional
Probab=96.35 E-value=0.0055 Score=55.89 Aligned_cols=35 Identities=26% Similarity=0.144 Sum_probs=32.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|.|||+|.-|...|..|+++|++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 36899999999999999999999999999998764
No 321
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.35 E-value=0.015 Score=52.06 Aligned_cols=143 Identities=22% Similarity=0.248 Sum_probs=76.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcE---EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCc-c
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDV---WLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNL-K 80 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 80 (297)
+||+|+|+ |..|..+...|+++||.+ ..+.++.+.-+.. .-.+ ..+.+.+.. .
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l-----------~~~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL-----------SFKG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee-----------eeCC-----------ceeEEeeCCHH
Confidence 58999999 999999999999988864 5554443221111 0000 112332211 2
Q ss_pred cccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc--eeEecC
Q 022407 81 DLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRG 158 (297)
Q Consensus 81 ~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vev~~~ 158 (297)
+++++|+||.|+|... -.++..++ ...+++|+++++....+. . .| .++.-+++..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g~g~--s~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGSV--SKKYAPKA---AAAGAVVIDNSSAFRMDP---D--VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChHH--HHHHHHHH---HhCCCEEEECCchhhcCC---C--CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 3678999999998554 33444433 334567777776543221 0 11 22222222211111 136666
Q ss_pred CCChHHHHH-HHHHHHHHhCCeEEEe
Q 022407 159 ADTSDETFR-ATKALAERFGKTVVCS 183 (297)
Q Consensus 159 ~~~~~~~~~-~~~~l~~~lG~~~v~~ 183 (297)
+++...... .+.++.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 666555444 4566666666654444
No 322
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.34 E-value=0.19 Score=44.39 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=34.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
.+|+|+|+|-+|.+-.+....+|- .+..+|+++++++.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A 226 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA 226 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH
Confidence 589999999999998888888876 688999999998877
No 323
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.048 Score=48.09 Aligned_cols=144 Identities=19% Similarity=0.234 Sum_probs=79.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE---ecC
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC---TSN 78 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 78 (297)
.||+|+|+ |.+|..|...|....+. +.++...++.=++ + .+.+. ..+.. ..+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~---~--------~~f~~----------~~~~v~~~~~~ 60 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKK---Y--------IEFGG----------KSIGVPEDAAD 60 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCc---c--------ccccC----------ccccCcccccc
Confidence 58999998 99999999999997654 4444433221000 0 00000 00111 133
Q ss_pred cccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcce---eE
Q 022407 79 LKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLV---EV 155 (297)
Q Consensus 79 ~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~v---ev 155 (297)
..+.+++|+++.|.+.+.. +++..++ .+.++++++|+|....+ +.--+-+.-.||-++.... -|
T Consensus 61 ~~~~~~~Divf~~ag~~~s--~~~~p~~---~~~G~~VIdnsSa~Rm~--------~DVPLVVPeVN~~~l~~~~~rg~I 127 (334)
T COG0136 61 EFVFSDVDIVFFAAGGSVS--KEVEPKA---AEAGCVVIDNSSAFRMD--------PDVPLVVPEVNPEHLIDYQKRGFI 127 (334)
T ss_pred ccccccCCEEEEeCchHHH--HHHHHHH---HHcCCEEEeCCcccccC--------CCCCEecCCcCHHHHHhhhhCCCE
Confidence 4446789999999986554 3444433 44578999999865321 1111222223332211111 14
Q ss_pred ecCCC-ChHHHHHHHHHHHHHhCCeEEEe
Q 022407 156 IRGAD-TSDETFRATKALAERFGKTVVCS 183 (297)
Q Consensus 156 ~~~~~-~~~~~~~~~~~l~~~lG~~~v~~ 183 (297)
+.++. +.....-.+.++++..+-+-+++
T Consensus 128 ianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 128 IANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred EECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 44433 45566677788888877655544
No 324
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.33 E-value=0.014 Score=49.16 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=37.3
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+.+.++|.|.|+ |.+|..++..|++.|++|++++++++..+..
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 5444468999987 9999999999999999999999998766544
No 325
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.32 E-value=0.01 Score=53.92 Aligned_cols=98 Identities=12% Similarity=0.179 Sum_probs=57.6
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMD-GLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD 81 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 81 (297)
.+||+|+|+ |..|..+...|..+ .++|+.+.++.+.-+.. ......+. .+. ..... .+.++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i----~~~~~~l~-~~~-----------~~~~~~~~~~~ 101 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF----GSVFPHLI-TQD-----------LPNLVAVKDAD 101 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc----hhhCcccc-Ccc-----------ccceecCCHHH
Confidence 469999999 99999999999988 78999887654321111 00000000 000 00011 11223
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
++++|+||.|+|... -.++...+ ..++.++.+++..-
T Consensus 102 ~~~~DvVf~Alp~~~--s~~i~~~~----~~g~~VIDlSs~fR 138 (381)
T PLN02968 102 FSDVDAVFCCLPHGT--TQEIIKAL----PKDLKIVDLSADFR 138 (381)
T ss_pred hcCCCEEEEcCCHHH--HHHHHHHH----hCCCEEEEcCchhc
Confidence 678999999998653 33444443 34566776776543
No 326
>PRK06753 hypothetical protein; Provisional
Probab=96.31 E-value=0.005 Score=55.78 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4799999999999999999999999999998765
No 327
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0048 Score=53.38 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=60.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-e---cCccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-T---SNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~---~~~~~ 81 (297)
.+|+|||.|..|.--|.....-|-+|++.|+|.+++..+... ...|+.. . .++++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~---------------------f~~rv~~~~st~~~iee 227 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL---------------------FGGRVHTLYSTPSNIEE 227 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh---------------------hCceeEEEEcCHHHHHH
Confidence 479999999999998888888899999999999988765211 1122222 2 22344
Q ss_pred -ccCCcEEEEec--ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 82 -LHSADIIVEAI--VESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 82 -~~~aD~Vi~~v--~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
+..+|+||-+| |.... -.-+.+++-+.++++++|+
T Consensus 228 ~v~~aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 228 AVKKADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred HhhhccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEE
Confidence 88999999876 32211 1234556556677777665
No 328
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.30 E-value=0.025 Score=53.78 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=35.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |.+|..++..|++.|++|++++|+.++++.+.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~ 122 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ 122 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 56888887 999999999999999999999999987765533
No 329
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.30 E-value=0.032 Score=51.96 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.-.-++|.|+|+|.+|.++|..|++.|++|.+.|++..
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 443447899999999999999999999999999998754
No 330
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.29 E-value=0.0045 Score=55.16 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=29.2
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||+|.-|..+|..|+++|++|+++|+++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999999999999765
No 331
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.28 E-value=0.006 Score=46.95 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
+||.|+|+|.+|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 689999999999999999999998 799999754
No 332
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.27 E-value=0.0049 Score=56.23 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|+.....|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 65556689999999999999999999999999999864
No 333
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.27 E-value=0.0051 Score=56.20 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=31.5
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
...|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3579999999999999999999999999999865
No 334
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.017 Score=54.24 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=32.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
++|.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 68999999999999999999999999999987543
No 335
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.25 E-value=0.012 Score=51.82 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407 4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
..++|+|-|+ |.+|+.|...|+++||.|...=|+++..
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~ 43 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDE 43 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchh
Confidence 4579999999 9999999999999999999999988863
No 336
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.016 Score=50.15 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=49.8
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|.|||.| .+|.++|..|.+.|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 789999998 8999999999999999999864332211 12567
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
||+||.++....-+.. .+++++++++
T Consensus 201 ADIvV~AvG~p~~i~~-------~~vk~GavVI 226 (285)
T PRK14191 201 ADIVCVGVGKPDLIKA-------SMVKKGAVVV 226 (285)
T ss_pred CCEEEEecCCCCcCCH-------HHcCCCcEEE
Confidence 9999999965443332 3456777765
No 337
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.20 E-value=0.0092 Score=53.16 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=33.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-C-CcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMD-G-LDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~ 44 (297)
++|.|+|+ |.||+.++..|+.. | .++++++|+.+++..+
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 68999999 89999999999854 5 5899999998877654
No 338
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.012 Score=50.96 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=51.0
Q ss_pred cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||-+. +|.++|..|.+.|..|++++.... ++.+ ++
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~ 201 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------------------------NLRHHVR 201 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------------------------CHHHHHh
Confidence 7899999988 899999999999999999975422 2333 57
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-+.. .+++++++++.
T Consensus 202 ~ADIvi~avG~p~~v~~-------~~vk~gavVID 229 (285)
T PRK10792 202 NADLLVVAVGKPGFIPG-------EWIKPGAIVID 229 (285)
T ss_pred hCCEEEEcCCCcccccH-------HHcCCCcEEEE
Confidence 89999999953332222 56678887763
No 339
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.18 E-value=0.015 Score=46.07 Aligned_cols=71 Identities=25% Similarity=0.289 Sum_probs=45.7
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|.|||-+ .+|.+++..|.+.|..|++.+.....+++ .++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~-------------------------------------~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE-------------------------------------ITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH-------------------------------------HHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc-------------------------------------eeee
Confidence 789999996 58999999999999999999765322221 2568
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecC
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
||+||.++.....++. ++++++++++...
T Consensus 80 ADIVVsa~G~~~~i~~-------~~ik~gavVIDvG 108 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIKA-------DWIKPGAVVIDVG 108 (160)
T ss_dssp SSEEEE-SSSTT-B-G-------GGS-TTEEEEE--
T ss_pred ccEEeeeecccccccc-------ccccCCcEEEecC
Confidence 9999999975443332 3567888777443
No 340
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.17 E-value=0.057 Score=50.54 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 6899999999999999999999999999998753
No 341
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.16 E-value=0.019 Score=48.62 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=37.1
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-+-++|.|+|+ |.+|..++..|++.|++|++.+|++++.+..
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV 45 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4334468999987 9999999999999999999999998776554
No 342
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=96.14 E-value=0.0021 Score=61.28 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=29.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 589999999999999999999998 788998643
No 343
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.13 E-value=0.008 Score=53.60 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=29.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
.|+|||+|..|..+|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999987
No 344
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.10 E-value=0.013 Score=47.04 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=50.0
Q ss_pred CcEEEEECCChhHHHHHHH-HH-HCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE--ecCc
Q 022407 5 MKVMGVVGSGQMGSGIAQL-GV-MDGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC--TSNL 79 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~-l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~ 79 (297)
+-+|.|||+|++|.+++.. +. ++|.+++ ++|.+++.+-.- . +.+.+ -+++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~-----------------~--------~~v~V~~~d~l 138 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK-----------------I--------GDVPVYDLDDL 138 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc-----------------c--------CCeeeechHHH
Confidence 4589999999999999986 55 6788755 899999854211 0 11222 2334
Q ss_pred cc-cc--CCcEEEEecccCHHHHHHHHHHHH
Q 022407 80 KD-LH--SADIIVEAIVESEDVKKKLFSELD 107 (297)
Q Consensus 80 ~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~ 107 (297)
+. ++ +.|+.|.|||.+. -|++...|-
T Consensus 139 e~~v~~~dv~iaiLtVPa~~--AQ~vad~Lv 167 (211)
T COG2344 139 EKFVKKNDVEIAILTVPAEH--AQEVADRLV 167 (211)
T ss_pred HHHHHhcCccEEEEEccHHH--HHHHHHHHH
Confidence 44 44 7899999998544 445544443
No 345
>PRK06126 hypothetical protein; Provisional
Probab=96.09 E-value=0.0071 Score=57.88 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
...+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 345799999999999999999999999999998754
No 346
>PRK06185 hypothetical protein; Provisional
Probab=96.09 E-value=0.0076 Score=55.31 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=31.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
...|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 35799999999999999999999999999998753
No 347
>PRK07588 hypothetical protein; Provisional
Probab=96.07 E-value=0.0073 Score=55.15 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|..|...|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 4799999999999999999999999999998754
No 348
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.06 E-value=0.18 Score=36.88 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=62.0
Q ss_pred cEEEEECCChhHHHHHHHHHH--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCc---
Q 022407 6 KVMGVVGSGQMGSGIAQLGVM--DGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNL--- 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~--- 79 (297)
.+|.-||+|. | .++..+++ .|.+|+.+|.+++.++.+++... +.+ ...++++ ..|.
T Consensus 3 ~~vLDlGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~---------~~~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT-G-RLSIALARLFPGARVVGVDISPEMLEIARERAA-------EEG---------LSDRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT-S-HHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHH-------HTT---------TTTTEEEEESCCHGG
T ss_pred CEEEEEcCcC-C-HHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-------hcC---------CCCCeEEEECccccC
Confidence 5799999987 3 34444555 89999999999999888865541 111 1133333 2333
Q ss_pred -ccccCCcEEEEec-----ccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 80 -KDLHSADIIVEAI-----VESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 80 -~~~~~aD~Vi~~v-----~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
......|+|+... .-..+..+.+++.+.+.++++..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 1245789999866 11224467788888888888776653
No 349
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.13 Score=45.89 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=36.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |-+|..+|..|++.|++|.+.+++++.++...+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~ 49 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAE 49 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888888 899999999999999999999999988766543
No 350
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.04 E-value=0.0071 Score=55.48 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|+++|++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998764
No 351
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.03 E-value=0.013 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred cEEEEECCChhHHHHHHHHHHC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD 27 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~ 27 (297)
.+|+|+|+|.||+.++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999988765
No 352
>PRK07538 hypothetical protein; Provisional
Probab=96.03 E-value=0.0078 Score=55.47 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|+++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998764
No 353
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=96.02 E-value=0.13 Score=42.88 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=59.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChh----h-hcccCCceEE-ecCc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQA----M-GTDAPRRLRC-TSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~-~~~~~~~i~~-~~~~ 79 (297)
.+|-++|||. ..-|..|+..|++|+.+|.++..++.+.+ +.+..... . ......++++ ..|.
T Consensus 36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFA----------ENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHH----------HcCCCcceeccccceeeecCceEEEEccC
Confidence 5899999997 46788899999999999999998886521 11110000 0 0000112332 2232
Q ss_pred cc-----ccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCeE
Q 022407 80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASAI 115 (297)
Q Consensus 80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~i 115 (297)
.+ ...-|.|+++. .-+.+.....++.+.++++++..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 22 12358888643 12345567788899999988763
No 354
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.02 E-value=0.018 Score=53.27 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=43.1
Q ss_pred cEEEEECCChhHHHHHHHHHHC--------CC--c-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--------GL--D-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR 74 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--------G~--~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.+|+|+|+|.+|..++..|.++ |. + +.++|++.++.... . .....
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~------------~------------~~~~~ 59 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV------------D------------LPGIL 59 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC------------C------------Ccccc
Confidence 5899999999999998877543 33 4 34678886542211 0 01123
Q ss_pred EecCccc-c--cCCcEEEEecccC
Q 022407 75 CTSNLKD-L--HSADIIVEAIVES 95 (297)
Q Consensus 75 ~~~~~~~-~--~~aD~Vi~~v~e~ 95 (297)
+++++++ + .+.|+|+++++..
T Consensus 60 ~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 60 LTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred eeCCHHHHhhCCCCCEEEECCCCc
Confidence 5667766 4 3579999998653
No 355
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0099 Score=54.02 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.6
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
..+|+|||+|.+|.+.|..|++.|++|+++|...
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 3689999999999999999999999999999765
No 356
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.00 E-value=0.008 Score=54.46 Aligned_cols=32 Identities=31% Similarity=0.265 Sum_probs=30.1
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|.+|.++|..|++.|++|+++|+..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 59999999999999999999999999999864
No 357
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.027 Score=47.31 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=34.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|+|+ |.+|..++..|++.|++|.+.+|++++.+..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 67999987 9999999999999999999999998766554
No 358
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.022 Score=53.28 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=31.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
++|.|||.|..|.+.|..|.+.|++|.++|..+.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 43 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPA 43 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChh
Confidence 6899999999999999999999999999997654
No 359
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.93 E-value=0.02 Score=49.62 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=50.0
Q ss_pred cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||-+. +|.++|..|.+.|..|++++... .++.+ ++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------------------------------~~l~~~~~ 206 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------------------------------DDLKKYTL 206 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------------------------------CCHHHHHh
Confidence 7899999988 89999999999999999997432 23333 57
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++. .+++++++++.
T Consensus 207 ~ADIvv~AvG~p~~i~~-------~~vk~gavVID 234 (287)
T PRK14176 207 DADILVVATGVKHLIKA-------DMVKEGAVIFD 234 (287)
T ss_pred hCCEEEEccCCccccCH-------HHcCCCcEEEE
Confidence 89999997753332222 35677887764
No 360
>PRK08013 oxidoreductase; Provisional
Probab=95.93 E-value=0.0085 Score=54.98 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998765
No 361
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.91 E-value=0.036 Score=42.89 Aligned_cols=68 Identities=29% Similarity=0.374 Sum_probs=48.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|.|+|- ...|.++|..|.+.|..|++.+.+.. ++++ ++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------------------------------~l~~~v~ 70 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------------------------------QLQSKVH 70 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------------------------------CHHHHHh
Confidence 67888887 55688888888888888888875432 2222 67
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.....++. ++++++++++.
T Consensus 71 ~ADIVvsAtg~~~~i~~-------~~ikpGa~Vid 98 (140)
T cd05212 71 DADVVVVGSPKPEKVPT-------EWIKPGATVIN 98 (140)
T ss_pred hCCEEEEecCCCCccCH-------HHcCCCCEEEE
Confidence 89999999976543333 34678887763
No 362
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.91 E-value=0.01 Score=54.26 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|..|..+|..|+++|++|+++|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 47999999999999999999999999999998
No 363
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.90 E-value=0.046 Score=49.14 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=56.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe-cCccc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMD-GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT-SNLKD 81 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 81 (297)
+||+|+|+ |.+|..++..|.++ ++++. +++.+...-+.. ... .+.+. .. ..+.+. .+.++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~----~~~------~~~l~-----~~-~~~~~~~~~~~~ 64 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV----SEV------HPHLR-----GL-VDLNLEPIDEEE 64 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh----HHh------Ccccc-----cc-CCceeecCCHHH
Confidence 48999999 99999999999976 67877 556554211111 000 00000 00 001122 13333
Q ss_pred -ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 82 -LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 82 -~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
.+++|+||.|+|.... .++..++. ..++.++++++..-
T Consensus 65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR 103 (346)
T TIGR01850 65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFR 103 (346)
T ss_pred hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhh
Confidence 3589999999997653 33433332 34677777777554
No 364
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.89 E-value=0.16 Score=45.45 Aligned_cols=147 Identities=20% Similarity=0.241 Sum_probs=79.5
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHH-CCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVM-DGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC 75 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~-~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
|.....||+|||+ |..|.-+...|.. ..++ +.++..... .|..-. .. ...+.+
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s------------------aGk~~~--~~--~~~l~v 58 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS------------------AGKTVQ--FK--GREIII 58 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc------------------CCCCee--eC--CcceEE
Confidence 6555579999999 9999999999995 6777 555543321 011000 00 011223
Q ss_pred e-cCcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCccee
Q 022407 76 T-SNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKLVE 154 (297)
Q Consensus 76 ~-~~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~ve 154 (297)
. .+.++++++|+||.|+|... -.++..++ ...++.++++++..-. .+.. -+++.-+|+..+...-.
T Consensus 59 ~~~~~~~~~~~Divf~a~~~~~--s~~~~~~~---~~~G~~VID~Ss~fR~-------~~~v-plvvPEvN~e~i~~~~~ 125 (347)
T PRK06728 59 QEAKINSFEGVDIAFFSAGGEV--SRQFVNQA---VSSGAIVIDNTSEYRM-------AHDV-PLVVPEVNAHTLKEHKG 125 (347)
T ss_pred EeCCHHHhcCCCEEEECCChHH--HHHHHHHH---HHCCCEEEECchhhcC-------CCCC-CeEeCCcCHHHHhccCC
Confidence 2 23344688999999998654 23343333 3457788888875432 1111 13333344332221112
Q ss_pred EecCCCChHH-HHHHHHHHHHHhCCeEEE
Q 022407 155 VIRGADTSDE-TFRATKALAERFGKTVVC 182 (297)
Q Consensus 155 v~~~~~~~~~-~~~~~~~l~~~lG~~~v~ 182 (297)
++.++.+... ..-.+.++.+..+-+-++
T Consensus 126 iIanPnC~tt~~~laL~PL~~~~~i~~v~ 154 (347)
T PRK06728 126 IIAVPNCSALQMVTALQPIRKVFGLERII 154 (347)
T ss_pred EEECCCCHHHHHHHHHHHHHHcCCccEEE
Confidence 5656555443 344566777665544343
No 365
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.033 Score=47.13 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=35.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 68889987 99999999999999999999999987766543
No 366
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.88 E-value=0.011 Score=54.16 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
++|.|||+|..|+..|..|++.|++|++++..+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 579999999999999999999999999999644
No 367
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.88 E-value=0.1 Score=48.81 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec---Ccccc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS---NLKDL 82 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~ 82 (297)
++|.|||.|.++..=+..|.++|.+|+++...-. +.+ ..+.+.|.+ ++.. ...++
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~--~~~--------~~l~~~~~i------------~~~~~~~~~~dl 70 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFI--PQF--------TAWADAGML------------TLVEGPFDESLL 70 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCC--HHH--------HHHHhCCCE------------EEEeCCCChHHh
Confidence 7899999999999999999999999999965421 111 112333332 2221 22348
Q ss_pred cCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCC--CCCcceeEecCCC
Q 022407 83 HSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPP--PLMKLVEVIRGAD 160 (297)
Q Consensus 83 ~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~--~~~~~vev~~~~~ 160 (297)
+++++||.|+. |.++.+.+ .+.++...+++ |...-+ . ..+|+.|. ...++.--+.+.+
T Consensus 71 ~~~~lv~~at~-d~~~n~~i----~~~a~~~~~lv-N~~d~~-----------~---~~~f~~pa~~~~g~l~iaisT~G 130 (457)
T PRK10637 71 DTCWLAIAATD-DDAVNQRV----SEAAEARRIFC-NVVDAP-----------K---AASFIMPSIIDRSPLMVAVSSGG 130 (457)
T ss_pred CCCEEEEECCC-CHHHhHHH----HHHHHHcCcEE-EECCCc-----------c---cCeEEEeeEEecCCEEEEEECCC
Confidence 89999998865 44444444 44444444444 322211 1 12333443 2233444455566
Q ss_pred ChHHHHHHHHHHHHHh
Q 022407 161 TSDETFRATKALAERF 176 (297)
Q Consensus 161 ~~~~~~~~~~~l~~~l 176 (297)
.+|.....++.-++.+
T Consensus 131 ~sP~~a~~lr~~ie~~ 146 (457)
T PRK10637 131 TSPVLARLLREKLESL 146 (457)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 7777777666655553
No 368
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.85 E-value=0.012 Score=53.79 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999999999998874
No 369
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.85 E-value=0.043 Score=50.75 Aligned_cols=30 Identities=27% Similarity=0.184 Sum_probs=28.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEE-e
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLV-D 35 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~-d 35 (297)
++|+|.|.|++|...|..|...|.+|+.+ |
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 68999999999999999999999999877 8
No 370
>PRK07411 hypothetical protein; Validated
Probab=95.83 E-value=0.023 Score=51.92 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
.+|.|||+|-+|+.+|..|+.+|. +++++|.+.=
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~v 73 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVV 73 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEe
Confidence 589999999999999999999998 7889987643
No 371
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.82 E-value=0.011 Score=53.57 Aligned_cols=31 Identities=29% Similarity=0.219 Sum_probs=29.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
.|.|||+|.+|.+.|..|++.|++|+++|+.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999984
No 372
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.82 E-value=0.032 Score=52.26 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.7
Q ss_pred CcEEEEECCChhHHH-HHHHHHHCCCcEEEEeCCHH
Q 022407 5 MKVMGVVGSGQMGSG-IAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~-iA~~l~~~G~~V~~~d~~~~ 39 (297)
.++|.|||+|..|.+ +|..|.+.|++|+++|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 468999999999999 79999999999999998754
No 373
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.81 E-value=0.037 Score=46.69 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=35.7
Q ss_pred CCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 3 ~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
..++++.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL 46 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 34567888886 9999999999999999999999998765544
No 374
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.81 E-value=0.038 Score=47.67 Aligned_cols=129 Identities=20% Similarity=0.277 Sum_probs=71.4
Q ss_pred cEEEEECCChhHHHHHHHHHHC----CC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceE
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD----GL-------DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLR 74 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~----G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 74 (297)
.||.|+|+|.-|.++|..|... |. +++++|+.---.+ -+..+......+.+... . .
T Consensus 26 ~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~-~r~~l~~~~~~~a~~~~-----------~-~ 92 (279)
T cd05312 26 QRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTK-DRKDLTPFKKPFARKDE-----------E-K 92 (279)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeC-CCCcchHHHHHHHhhcC-----------c-c
Confidence 6899999999999999998876 87 7899998521000 00001111111111110 0 0
Q ss_pred EecCccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecCCCC
Q 022407 75 CTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFMNPP 147 (297)
Q Consensus 75 ~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~~p~ 147 (297)
-..++.+ ++ ++|++|=+-...-...+++++.+.++++.-.|+. ||... ..+++..+......-+....+|.|.
T Consensus 93 ~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv 172 (279)
T cd05312 93 EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPV 172 (279)
T ss_pred cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCe
Confidence 1235555 67 7898886442222447788888888887666665 44332 2334444433222233344566665
No 375
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.78 E-value=0.013 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.+|.|||+|..|...|..|++.|++|+++|..+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 479999999999999999999999999999764
No 376
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.78 E-value=0.029 Score=50.14 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT 76 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 76 (297)
|.++ .||+|+|+ |..|.-+...|.+++|.+. .+. +.+...+- +... . ..+.+.
T Consensus 1 m~~~-~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~-----------l~~~--------~--~~l~~~ 57 (336)
T PRK05671 1 MSQP-LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHS-----------VPFA--------G--KNLRVR 57 (336)
T ss_pred CCCC-CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCe-----------eccC--------C--cceEEe
Confidence 5443 69999998 9999999999998887533 332 22211100 0000 0 112232
Q ss_pred c-CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCc--ce
Q 022407 77 S-NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMK--LV 153 (297)
Q Consensus 77 ~-~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~--~v 153 (297)
. +..+++++|+||.|+|... -..+..++. ..++.++.+++..-.+ ..| .++.-+++..+.. --
T Consensus 58 ~~~~~~~~~vD~vFla~p~~~--s~~~v~~~~---~~G~~VIDlS~~fR~~------~~p---l~lPEvn~~~i~~~~~~ 123 (336)
T PRK05671 58 EVDSFDFSQVQLAFFAAGAAV--SRSFAEKAR---AAGCSVIDLSGALPSA------QAP---NVVPEVNAERLASLAAP 123 (336)
T ss_pred eCChHHhcCCCEEEEcCCHHH--HHHHHHHHH---HCCCeEEECchhhcCC------CCC---EEecccCHHHHccccCC
Confidence 2 1223678999999998543 233444332 3467777777755322 111 2232233321111 02
Q ss_pred eEecCCCChHHH-HHHHHHHHHHhCC
Q 022407 154 EVIRGADTSDET-FRATKALAERFGK 178 (297)
Q Consensus 154 ev~~~~~~~~~~-~~~~~~l~~~lG~ 178 (297)
.++..+++.+.. .-.+.++.+.++.
T Consensus 124 ~iIAnPgC~~t~~~laL~PL~~~~~~ 149 (336)
T PRK05671 124 FLVSSPSASAVALAVALAPLKGLLDI 149 (336)
T ss_pred CEEECCCcHHHHHHHHHHHHHHhcCC
Confidence 366666665543 3445677755654
No 377
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.77 E-value=0.036 Score=47.91 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=51.1
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccccC
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLHS 84 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (297)
++|.|||-+ ..|.++|..|...|..|++...+...+.. .++.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~-------------------------------------~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKA-------------------------------------ELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHH-------------------------------------HHhh
Confidence 689999998 88999999999999999999866433222 2457
Q ss_pred CcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 85 ADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 85 aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
||+||.+++-..-++.+ +++++++++.
T Consensus 196 ADIvI~Avgk~~lv~~~-------~vk~GavVID 222 (279)
T PRK14178 196 ADILVSAAGKAGFITPD-------MVKPGATVID 222 (279)
T ss_pred CCEEEECCCcccccCHH-------HcCCCcEEEE
Confidence 99999999744323332 3477887764
No 378
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.012 Score=54.48 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=30.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|||+|+|+|.-|.+-|..|+++||+|++|+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 589999999999999999999999999998764
No 379
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.75 E-value=0.16 Score=44.32 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|+|+|-+|..+|.+|+.+|. +++++|.+.
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 589999999999999999999998 699999764
No 380
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.74 E-value=0.011 Score=57.90 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=30.8
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
..|.|||+|.+|.++|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 379999999999999999999999999999863
No 381
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.74 E-value=0.011 Score=54.28 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 4799999999999999999999999999998764
No 382
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.73 E-value=0.069 Score=47.48 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=48.1
Q ss_pred EEEECCChhHHHHHHHHHH-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-ccC
Q 022407 8 MGVVGSGQMGSGIAQLGVM-DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LHS 84 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~ 84 (297)
|+|+|+|.+|+..+..+.+ .+.+|. +.|.+++....+..... .+.+ .........-....+....++++ ..+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lg--yds~---~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELG--IPVY---AASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhC--CCEE---eecCCcceEeccCceEecCCHHHHhhc
Confidence 6899999999999998765 355655 56777664433311100 0000 00000000001122445556666 678
Q ss_pred CcEEEEecccCHH
Q 022407 85 ADIIVEAIVESED 97 (297)
Q Consensus 85 aD~Vi~~v~e~~~ 97 (297)
+|+|++|.|....
T Consensus 76 vDiVve~Tp~~~~ 88 (333)
T TIGR01546 76 VDIVVDATPGGIG 88 (333)
T ss_pred CCEEEECCCCCCC
Confidence 9999999987664
No 383
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.72 E-value=0.017 Score=53.88 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 3 EKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 3 ~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+...|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3445799999999999999999999999999998753
No 384
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.72 E-value=0.012 Score=54.52 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=32.6
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..++|+|||||.-|...|..|.+.|++|++++++..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 357899999999999999999999999999998654
No 385
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.71 E-value=0.065 Score=45.10 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=29.7
Q ss_pred EEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 8 MGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 8 V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|+|+|+ |.+|++++..|.+.|++|++.-|++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 789997 99999999999999999999999874
No 386
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.71 E-value=0.049 Score=43.17 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=51.0
Q ss_pred cEEEEECC--ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-c
Q 022407 6 KVMGVVGS--GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-L 82 (297)
Q Consensus 6 ~~V~iiG~--G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~ 82 (297)
.||++||- +++..+++..+++-|.+|+++.+..-....-.+.+....+...+.| ..++++++.++ +
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-----------~~i~~~~~~~e~l 71 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-----------GKITITDDIEEAL 71 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-----------TEEEEESSHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-----------CCeEEEeCHHHhc
Confidence 58999994 7999999999999999999987765221111111111112222222 34678888866 9
Q ss_pred cCCcEEEEeccc
Q 022407 83 HSADIIVEAIVE 94 (297)
Q Consensus 83 ~~aD~Vi~~v~e 94 (297)
+++|+|+...--
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 999999986543
No 387
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.71 E-value=0.48 Score=42.84 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=97.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC----ChhhhcccCCceEE---ec
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRATKSISSSIQKFVSKGQL----SQAMGTDAPRRLRC---TS 77 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~i~~---~~ 77 (297)
.+|-|+|+|..+-.+|..|-+.+. .|-++.|...+.++..+.+.+. .+.+ ..++.....+.+.+ ..
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~------~~~~~v~vqn~~h~~l~G~~~id~~~~ 75 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARS------DGLFEVSVQNEQHQALSGECTIDHVFQ 75 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhC------CCEEEEeecchhhhhhcCeEEhhHhhc
Confidence 579999999999999999988765 6999999776666554443321 1111 01111112222222 34
Q ss_pred Cccc-ccCCcEEEEecccCHHHHHHHHHHHHhhcc--CCe-EEeecC--CCccHHHHhhhcCCCCeEEEee-c------C
Q 022407 78 NLKD-LHSADIIVEAIVESEDVKKKLFSELDKITK--ASA-ILASNT--SSISITRLASATSRPCQVIGMH-F------M 144 (297)
Q Consensus 78 ~~~~-~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~--~~~-ii~s~t--s~~~~~~l~~~~~~~~~~~g~h-~------~ 144 (297)
++++ ..+=|.+|.|+|.|. -..++++|....- -.+ |++|.| |..-++.+.........++... | .
T Consensus 76 ~~~~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 76 DYEEIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred CHHHhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceec
Confidence 4555 456799999999776 4467766543221 133 445444 3333455555444344455432 2 2
Q ss_pred CC--C-CCC-cc--eeE-ecCCCChHHHHHHHHHHHHHhCCeEEEecc
Q 022407 145 NP--P-PLM-KL--VEV-IRGADTSDETFRATKALAERFGKTVVCSQD 185 (297)
Q Consensus 145 ~p--~-~~~-~~--vev-~~~~~~~~~~~~~~~~l~~~lG~~~v~~~d 185 (297)
+. | ++. .. -.| +.+..++...++++..+++.+|-....+..
T Consensus 154 d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~ 201 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDN 201 (429)
T ss_pred cCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCC
Confidence 21 2 111 00 112 222345566788899999999998887753
No 388
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=95.71 E-value=0.17 Score=42.39 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=59.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCh-----hhhcccCCceEE-ecCc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQ-----AMGTDAPRRLRC-TSNL 79 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~i~~-~~~~ 79 (297)
.+|-++|||. ..-|..|+..|++|+.+|.++..++.+.+ +.+.... +.......++++ ..|.
T Consensus 39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~----------~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFA----------ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHH----------HcCCCccccccccccccccCceEEEECcc
Confidence 5899999997 36777899999999999999998887521 1111000 000000122332 1222
Q ss_pred cc-----ccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCe
Q 022407 80 KD-----LHSADIIVEAI---VESEDVKKKLFSELDKITKASA 114 (297)
Q Consensus 80 ~~-----~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~ 114 (297)
-+ ....|.|++.. .-+.+.+...++.+.++++++.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 11 23457888533 1235557788899999998885
No 389
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.69 E-value=0.043 Score=46.83 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=36.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
++|.|.|+ |.+|..++..|++.|++|.+.+++++..+...+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 50 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE 50 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence 67889988 9999999999999999999999998776665443
No 390
>PRK07190 hypothetical protein; Provisional
Probab=95.67 E-value=0.016 Score=54.66 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.+....|.|||+|..|...|..|+++|++|.++|+.++
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 655556899999999999999999999999999998765
No 391
>PRK07877 hypothetical protein; Provisional
Probab=95.67 E-value=0.0092 Score=58.40 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=29.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC--cEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL--DVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~--~V~~~d~~~~ 39 (297)
.+|+|+|+| +|+.+|..|+.+|. +++++|.+.=
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~v 142 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTL 142 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEE
Confidence 589999999 89999999999995 8999987643
No 392
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.67 E-value=0.014 Score=53.86 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 39 (297)
++|.|||+|.-|...|..|+++|+ +|++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 479999999999999999999985 9999999765
No 393
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.66 E-value=0.035 Score=47.52 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=35.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
|+|.|.|+ |.+|..+|..|++.|++|.+.+++++.++...+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKE 43 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 37889987 8899999999999999999999998877665433
No 394
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.66 E-value=0.021 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
++|.|.|+ |.+|+.++..|++.|++|++++++++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 37899986 999999999999999999999998664
No 395
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.66 E-value=0.021 Score=49.04 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=49.5
Q ss_pred cEEEEECCCh-hHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQ-MGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
+++.|||.+. +|.+|+..|.++++.|++..... .++.+ ++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------------------------------~~l~~~~k 198 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------------------------------KDLASITK 198 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------------------------------CCHHHHhh
Confidence 6899999965 59999999999999999997432 23333 57
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
.||+||.++--..-++ .++++++++++
T Consensus 199 ~ADIvv~AvG~p~~i~-------~d~vk~gavVI 225 (283)
T COG0190 199 NADIVVVAVGKPHFIK-------ADMVKPGAVVI 225 (283)
T ss_pred hCCEEEEecCCccccc-------cccccCCCEEE
Confidence 8999999986433333 34566777665
No 396
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.65 E-value=0.014 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=30.1
Q ss_pred cEEEEECCChhHHHHHHHHHHC---CCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD---GLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~---G~~V~~~d~~ 37 (297)
.+|.|||+|..|...|..|++. |++|+++|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 5799999999999999999998 9999999994
No 397
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.64 E-value=0.012 Score=53.36 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=30.5
Q ss_pred EEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 8 MGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 88999999999999999999999999999865
No 398
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.64 E-value=0.016 Score=53.71 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=33.4
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|.++.-.|.|||+|.-|+..|..|+++|++|.++|+.+
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 54444579999999999999999999999999999864
No 399
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.63 E-value=0.016 Score=52.39 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.7
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|.+|.+.|..|++.|++|+++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48999999999999999999999999999753
No 400
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.63 E-value=0.014 Score=48.77 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=28.5
Q ss_pred cEEEEECCChhHHHHHHHH--HHCCCcEE-EEeCCHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLG--VMDGLDVW-LVDTDPDAL 41 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l--~~~G~~V~-~~d~~~~~~ 41 (297)
.+|+|||+|.+|..++..+ ...|+++. ++|.++++.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~ 123 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKI 123 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhc
Confidence 5899999999999998863 35688777 678887643
No 401
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.62 E-value=0.022 Score=49.19 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=49.8
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||-+ .+|.++|..|.+.|..|++.... +.++.+ ++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------------------------------------T~~l~~~~~ 199 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIF--------------------------------------TKDLKAHTK 199 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------------------------------CcCHHHHHh
Confidence 689999997 88999999999999999987532 123333 67
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++. ++++++++++.
T Consensus 200 ~ADIvV~AvGkp~~i~~-------~~vk~gavvID 227 (281)
T PRK14183 200 KADIVIVGVGKPNLITE-------DMVKEGAIVID 227 (281)
T ss_pred hCCEEEEecCcccccCH-------HHcCCCcEEEE
Confidence 89999999964333332 35677777763
No 402
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.61 E-value=0.016 Score=53.05 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=30.5
Q ss_pred cEEEEECCChhHHHHHHHHHHC--CCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMD--GLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~--G~~V~~~d~~~ 38 (297)
..|.|||+|.+|..+|..|++. |++|+++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3699999999999999999998 99999999864
No 403
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.61 E-value=0.015 Score=53.35 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|..|...|..|+++|++|+++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999985
No 404
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.61 E-value=0.015 Score=53.60 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=30.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||+|..|+..|..|++.|++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997554
No 405
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.60 E-value=0.045 Score=46.90 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=36.9
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|..+-++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEAL 45 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4333468999986 9999999999999999999999998776554
No 406
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.60 E-value=0.07 Score=45.38 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=69.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-----------cEEEEeCCHHHHH---HHHHHHHHHHHHHHHcCCCChhhhcccCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-----------DVWLVDTDPDALV---RATKSISSSIQKFVSKGQLSQAMGTDAPR 71 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-----------~V~~~d~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 71 (297)
.||.|+|+|.-|.++|..|...+. +++++|+.---.+ ... ..++.+.++....
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~-~~~~~~~~~~~~~------------ 92 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETC-PNEYHLARFANPE------------ 92 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccC-HHHHHHHHHcCcc------------
Confidence 689999999999999999887664 6888887521000 000 0001111111110
Q ss_pred ceEEecCccc-cc--CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecC
Q 022407 72 RLRCTSNLKD-LH--SADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFM 144 (297)
Q Consensus 72 ~i~~~~~~~~-~~--~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~ 144 (297)
....++.+ ++ ++|++|=+-.-.-...+++++.+.++++.-.|+. ||..+ ..+++..+......-+....+|
T Consensus 93 --~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf 170 (254)
T cd00762 93 --RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPF 170 (254)
T ss_pred --cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCC
Confidence 11245555 67 8898885332122346788888888877666665 33332 2344444443222334444555
Q ss_pred CCC
Q 022407 145 NPP 147 (297)
Q Consensus 145 ~p~ 147 (297)
.|.
T Consensus 171 ~pv 173 (254)
T cd00762 171 HPV 173 (254)
T ss_pred CCc
Confidence 554
No 407
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.59 E-value=0.029 Score=45.69 Aligned_cols=85 Identities=20% Similarity=0.312 Sum_probs=55.5
Q ss_pred cEEEEECCC-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEe--cC----
Q 022407 6 KVMGVVGSG-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCT--SN---- 78 (297)
Q Consensus 6 ~~V~iiG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~---- 78 (297)
++|+|||-+ .+|.++|..|.+.|..|+++|.+.-..-. ..+.+ .+ +.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~---------~h-s~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI---------RH-EKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc---------cc-ccccccchhhH
Confidence 789999994 56999999999999999999876432200 00000 00 111 12
Q ss_pred ccc-ccCCcEEEEecccCHH-HHHHHHHHHHhhccCCeEEeecC
Q 022407 79 LKD-LHSADIIVEAIVESED-VKKKLFSELDKITKASAILASNT 120 (297)
Q Consensus 79 ~~~-~~~aD~Vi~~v~e~~~-~k~~~~~~l~~~~~~~~ii~s~t 120 (297)
+.+ ++.||+||.+++...- ++. ++++++++++...
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVG 156 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFA 156 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcC
Confidence 334 7899999999986553 443 3457888776433
No 408
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=95.58 E-value=0.012 Score=53.36 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=30.1
Q ss_pred EEEECCChhHHHHHHHHHHCC-CcEEEEeCCHH
Q 022407 8 MGVVGSGQMGSGIAQLGVMDG-LDVWLVDTDPD 39 (297)
Q Consensus 8 V~iiG~G~mG~~iA~~l~~~G-~~V~~~d~~~~ 39 (297)
|.|||+|..|...|..|+++| ++|+++|+.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 789999999999999999999 99999998754
No 409
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=95.58 E-value=0.062 Score=47.97 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHC-CCcEEE-EeCC
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMD-GLDVWL-VDTD 37 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~-G~~V~~-~d~~ 37 (297)
|.....||+|+|+|.||+..+..+... +.++.. .|.+
T Consensus 1 ~~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~ 39 (338)
T PLN02358 1 MADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF 39 (338)
T ss_pred CCCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 544556999999999999999987754 566654 5544
No 410
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.58 E-value=0.012 Score=54.01 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=30.4
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.|.|||+|..|.++|..|+++|++|+++|+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 59999999999999999999999999999875
No 411
>PRK09126 hypothetical protein; Provisional
Probab=95.57 E-value=0.015 Score=52.97 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4699999999999999999999999999998754
No 412
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.57 E-value=0.043 Score=46.38 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=34.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 57889986 9999999999999999999999998776554
No 413
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.56 E-value=0.016 Score=52.68 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|..|..+|..|++.|++|+++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 46999999999999999999999999999975
No 414
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.56 E-value=0.014 Score=55.62 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+||+|||+|.-|...+..|.+.|++|++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998654
No 415
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.54 E-value=0.056 Score=45.52 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=34.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|+..|++|.+.+|+++..+..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888886 8999999999999999999999998765544
No 416
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.18 Score=42.69 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=36.1
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-+-++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERV 45 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHH
Confidence 4333468999988 9999999999999999999999998765443
No 417
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.054 Score=46.10 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=35.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
+++.|.|+ |.+|..+|..|++.|++|.+.++++++++.+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVA 48 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888887 889999999999999999999999887666533
No 418
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.52 E-value=0.052 Score=45.52 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=61.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc-cC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL-HS 84 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 84 (297)
.+|.=|||| |..++..+|+.|.+|+..|.+++.++.++.... +.|..-. -+.....++... ..
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~-------e~gv~i~-------y~~~~~edl~~~~~~ 124 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHAL-------ESGVNID-------YRQATVEDLASAGGQ 124 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhh-------hcccccc-------chhhhHHHHHhcCCC
Confidence 578889998 668999999999999999999999887743321 1121000 000011122221 35
Q ss_pred CcEEEEe-----cccCHHHHHHHHHHHHhhccCCeEEeecCCCc
Q 022407 85 ADIIVEA-----IVESEDVKKKLFSELDKITKASAILASNTSSI 123 (297)
Q Consensus 85 aD~Vi~~-----v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 123 (297)
-|+|+-+ ||+. +.++....+.++|+.++..+|-.-
T Consensus 125 FDvV~cmEVlEHv~dp----~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 125 FDVVTCMEVLEHVPDP----ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccEEEEhhHHHccCCH----HHHHHHHHHHcCCCcEEEEecccc
Confidence 6777632 3432 346778888999988777555443
No 419
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.51 E-value=0.28 Score=41.23 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=60.9
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE-ecCcc----
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC-TSNLK---- 80 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~---- 80 (297)
.+|-|.|||. +.=+.+|+..||+|+.+|.++..++.+.+...-... ..+.+.... ..-..+++ ..|.-
T Consensus 45 ~rvLvPgCGk--g~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~-~~~~~~~~~----~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 45 SVCLIPMCGC--SIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYE-VIHGNDYKL----YKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CeEEEeCCCC--hHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcc-eecccccce----eccCceEEEEccCcCCCc
Confidence 5899999997 455778999999999999999998876331100000 000000000 00011221 12221
Q ss_pred ---cccCCcEEEEec---ccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 81 ---DLHSADIIVEAI---VESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 81 ---~~~~aD~Vi~~v---~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
.....|+|.+.. .=+.+......+.+.++++++..++
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 134578888743 1134567888888999888866443
No 420
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.50 E-value=0.12 Score=46.40 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred CCCcEEEEECC-ChhHHHHHHHHHHCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-
Q 022407 3 EKMKVMGVVGS-GQMGSGIAQLGVMDGLD---VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS- 77 (297)
Q Consensus 3 ~~~~~V~iiG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~- 77 (297)
+...||+|+|+ |..|..+...|.+.+|. +..+..... ..+. + ...+ ..+.+..
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~---~-------~~~~-----------~~~~v~~~ 62 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKK---V-------TFEG-----------RDYTVEEL 62 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCe---e-------eecC-----------ceeEEEeC
Confidence 44579999999 99999999999998884 333322211 0000 0 0001 1122322
Q ss_pred CcccccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCcc
Q 022407 78 NLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSIS 124 (297)
Q Consensus 78 ~~~~~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 124 (297)
+.+++.++|+||.|+|.... .++..++ ...++.++.+++..-
T Consensus 63 ~~~~~~~~D~vf~a~p~~~s--~~~~~~~---~~~g~~VIDlS~~fR 104 (344)
T PLN02383 63 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VDKGAVVVDNSSAFR 104 (344)
T ss_pred CHHHHcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCchhh
Confidence 22346889999999987643 3343333 235777777777543
No 421
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.49 E-value=0.056 Score=46.00 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 4 KMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 4 ~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
.-++|.|.|+ |.+|..+|..|++.|++|.+.+++++..+...
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 3467889987 89999999999999999999999987665543
No 422
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=95.48 E-value=0.046 Score=47.94 Aligned_cols=100 Identities=27% Similarity=0.331 Sum_probs=64.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT-DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++++|+|.|.+|+-.|.++-.-|..|..||. .+....+ ..| ++.. ++++ +.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~g-------------vq~v-sl~Eil~ 199 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFG-------------VQLV-SLEEILP 199 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hcc-------------ceee-eHHHHHh
Confidence 6899999999999999999999999999986 3332211 222 1233 3444 88
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCC--Cc-cHHHHhhhcC
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILASNTS--SI-SITRLASATS 133 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts--~~-~~~~l~~~~~ 133 (297)
.||+|=.-+|-.++.+.-+-.+.-..++.+.-|+ |++ ++ +...+-+.+.
T Consensus 200 ~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 200 KADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRALD 251 (406)
T ss_pred hcCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHHh
Confidence 8999998887666544433344444566666555 333 32 3345555553
No 423
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.47 E-value=0.15 Score=43.34 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=35.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|.+++++++..+..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAA 44 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 68999986 9999999999999999999999998876654
No 424
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.058 Score=45.83 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=34.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.+++++.++..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 47 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEET 47 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 68999987 8999999999999999999999998876654
No 425
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.46 E-value=0.028 Score=51.93 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=33.4
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDA 40 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 40 (297)
.+||+|+|+|.-|.+.|..|.+.|++|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 579999999999999999999999999999987765
No 426
>PLN02985 squalene monooxygenase
Probab=95.45 E-value=0.023 Score=53.91 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
..|.|||+|..|...|..|++.|++|+++|++.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 479999999999999999999999999999874
No 427
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.43 E-value=0.049 Score=43.59 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=34.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|..|.+-+..+...|++|+.+|.+++++++.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 689999999999999999999999999999998877654
No 428
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.43 E-value=0.087 Score=44.80 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.7
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCC-CcE-EEEeCCHH
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDG-LDV-WLVDTDPD 39 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G-~~V-~~~d~~~~ 39 (297)
++||+|.|+ |.||+.+...+.+.. +++ -.+|+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 468999999 999999999988765 554 36777654
No 429
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.41 E-value=0.13 Score=47.68 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=63.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEE
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMD---GL----DVWLVDT--DPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRC 75 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~---G~----~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 75 (297)
-+|+|-|+ |.+|.++..+++.- |. .+.++|+ +.+.++...-.+++..-.+ +..+.+
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pl--------------l~~v~i 189 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPL--------------LRGISV 189 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhh--------------cCCcEE
Confidence 47999998 99999999998873 43 4778998 5666655443433332111 111233
Q ss_pred -ecCcccccCCcEEEEeccc--C------------HHHHHHHHHHHHhhccC-CeEEeecCCCccH
Q 022407 76 -TSNLKDLHSADIIVEAIVE--S------------EDVKKKLFSELDKITKA-SAILASNTSSISI 125 (297)
Q Consensus 76 -~~~~~~~~~aD~Vi~~v~e--~------------~~~k~~~~~~l~~~~~~-~~ii~s~ts~~~~ 125 (297)
+++++++++||+||.+..- . ..+.+.+...|.++.++ ..|++..|....+
T Consensus 190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~ 255 (452)
T cd05295 190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNL 255 (452)
T ss_pred EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHH
Confidence 4556679999999987521 1 12233344456666662 4455544444443
No 430
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=95.41 E-value=0.55 Score=40.37 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=93.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGL--DVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD- 81 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (297)
-||+|+|+ |-+|.++...|-.+=. +..+||+.... ... .+...+.. ..........+.++.
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVa----------aDlSHI~T---~s~V~g~~g~~~L~~a 93 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVA----------ADLSHINT---NSSVVGFTGADGLENA 93 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--ccc----------ccccccCC---CCceeccCChhHHHHH
Confidence 58999999 9999999977765432 67799986321 000 00011100 000000111233444
Q ss_pred ccCCcEEEEe--cccCH------------HHHHHHHHHHHhhccCCeE-EeecC--CCccH-HHHhhhc--CCCCeEEEe
Q 022407 82 LHSADIIVEA--IVESE------------DVKKKLFSELDKITKASAI-LASNT--SSISI-TRLASAT--SRPCQVIGM 141 (297)
Q Consensus 82 ~~~aD~Vi~~--v~e~~------------~~k~~~~~~l~~~~~~~~i-i~s~t--s~~~~-~~l~~~~--~~~~~~~g~ 141 (297)
++++|+|+.- +|-++ .+.+.+-..+.+.|+...+ ++||. |++|+ .++.... -.|.++.|.
T Consensus 94 l~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGV 173 (345)
T KOG1494|consen 94 LKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGV 173 (345)
T ss_pred hcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceece
Confidence 8999999974 34322 2344444557777766554 34554 45555 2333222 245666665
Q ss_pred ecCCCCC--------------C---Cc------ceeEecC-------CCChHHHHHHHHHHHHHhCCeEEEeccchhhhH
Q 022407 142 HFMNPPP--------------L---MK------LVEVIRG-------ADTSDETFRATKALAERFGKTVVCSQDYAGFIV 191 (297)
Q Consensus 142 h~~~p~~--------------~---~~------~vev~~~-------~~~~~~~~~~~~~l~~~lG~~~v~~~d~~g~i~ 191 (297)
.-++-.+ . .+ .+.|++- ...+++.++.+..-.+.-|..++-.+...|...
T Consensus 174 TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSAT 253 (345)
T KOG1494|consen 174 TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSAT 253 (345)
T ss_pred ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchh
Confidence 5432211 0 00 1222221 234566666666666667888888888777666
Q ss_pred HHHHHH
Q 022407 192 NRILMP 197 (297)
Q Consensus 192 nri~~~ 197 (297)
-.|-++
T Consensus 254 LSMAyA 259 (345)
T KOG1494|consen 254 LSMAYA 259 (345)
T ss_pred hhHHHH
Confidence 555544
No 431
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.063 Score=45.21 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++++|++++.+..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKV 46 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence 67888987 8999999999999999999999998766554
No 432
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.41 E-value=0.032 Score=46.72 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=33.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 45 (297)
.+|+|+|.|-+|+..+..|++.|. +++++|.+.=.+....
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~N 71 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTN 71 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 589999999999999999999998 7889987654444433
No 433
>PRK09186 flagellin modification protein A; Provisional
Probab=95.38 E-value=0.16 Score=43.16 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=35.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~ 45 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELL 45 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence 67888887 89999999999999999999999988766553
No 434
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.38 E-value=0.061 Score=45.46 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=34.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++.+|+++++...
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57999985 9999999999999999999999998765544
No 435
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.17 Score=47.28 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
-.|.|+|.|..|.++|..|.+.|++|+++|..+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4799999999999999999999999999997653
No 436
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.37 E-value=0.068 Score=45.23 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=35.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
+++.|+|+ |.+|..++..|++.|++|++.++++++++...
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~ 46 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAV 46 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 57899998 99999999999999999999999987765543
No 437
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.37 E-value=0.067 Score=45.28 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=34.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 67889988 9999999999999999999999998765544
No 438
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.37 E-value=0.023 Score=51.97 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=31.7
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4799999999999999999999999999998864
No 439
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.36 E-value=1.1 Score=38.78 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=33.3
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~ 44 (297)
.+|.|+|+|.+|...++.+...|.+ |++.|+++++.+.+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 5899999999999888888788987 88889998877655
No 440
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.35 E-value=0.054 Score=48.15 Aligned_cols=43 Identities=33% Similarity=0.425 Sum_probs=36.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 48 (297)
+.+.|.|+ |-+|..+|..|++.|++|.+++|++++++...+.+
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence 46777787 88999999999999999999999998877665444
No 441
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.35 E-value=0.059 Score=46.44 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=37.0
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|....++|.|.|+ |.+|..++..|++.|++|.+.++++++++..
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKET 45 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 3333468899988 9999999999999999999999998877654
No 442
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.34 E-value=0.021 Score=53.46 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.3
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
.++|+|||+|.-|...|..|.+.|++|++++++.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3789999999999999999999999999999754
No 443
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.34 E-value=0.067 Score=45.54 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=35.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.++++++++...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA 51 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 68999987 99999999999999999999999987765543
No 444
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.30 E-value=0.022 Score=55.40 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
..+|.|||+|..|..+|..|++.|++|++|++++
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3689999999999999999999999999999875
No 445
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.30 E-value=0.023 Score=52.17 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=28.5
Q ss_pred EEEEECCChhHHHHHHHHHHC-CC-cEEEEeCC
Q 022407 7 VMGVVGSGQMGSGIAQLGVMD-GL-DVWLVDTD 37 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~-G~-~V~~~d~~ 37 (297)
.|.|||+|.+|.++|..|++. |. +|+++|++
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 599999999999999999985 95 89999985
No 446
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.30 E-value=0.033 Score=48.42 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=31.7
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHH
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDAL 41 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 41 (297)
+|.|+|+ |.+|+.++..|.+.|++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4789988 9999999999999999999999998743
No 447
>PRK06184 hypothetical protein; Provisional
Probab=95.30 E-value=0.023 Score=53.86 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|..|...|..|++.|++|+++|+.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4799999999999999999999999999998754
No 448
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.29 E-value=0.031 Score=40.24 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=45.6
Q ss_pred CcEEEEECCChhHHHHHHH-HHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCcccc
Q 022407 5 MKVMGVVGSGQMGSGIAQL-GVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDL 82 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~-l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (297)
..+|+|+|+|.+|.+++.. +...|+. +.++|.++++.-. ....+.+..+.+++
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-------------------------~i~gipV~~~~~~l 57 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-------------------------EIGGIPVYGSMDEL 57 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-------------------------EETTEEEESSHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-------------------------EECCEEeeccHHHh
Confidence 3689999999999999865 4567887 4588999874321 12234555555542
Q ss_pred -c--CCcEEEEecccCH
Q 022407 83 -H--SADIIVEAIVESE 96 (297)
Q Consensus 83 -~--~aD~Vi~~v~e~~ 96 (297)
+ +.|+.|.++|.+.
T Consensus 58 ~~~~~i~iaii~VP~~~ 74 (96)
T PF02629_consen 58 EEFIEIDIAIITVPAEA 74 (96)
T ss_dssp HHHCTTSEEEEES-HHH
T ss_pred hhhhCCCEEEEEcCHHH
Confidence 2 3899999998544
No 449
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.28 E-value=0.062 Score=45.54 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=34.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..+..
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAV 52 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Confidence 57888876 9999999999999999999999998776554
No 450
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.27 E-value=0.076 Score=45.20 Aligned_cols=39 Identities=28% Similarity=0.250 Sum_probs=34.5
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|++++++++.++..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~ 51 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAA 51 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 67888887 8999999999999999999999998766554
No 451
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.27 E-value=0.073 Score=44.77 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
|.-.-+++.|.|+ +.+|.++|..|++.|++|.+.+|+++++++..+
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~ 47 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYE 47 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4333367888888 558999999999999999999999987776543
No 452
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.27 E-value=0.07 Score=44.94 Aligned_cols=44 Identities=32% Similarity=0.391 Sum_probs=36.4
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEE-eCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLV-DTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~ 44 (297)
|.-+.++|.|+|+ |.+|..++..|++.|++|++. +++++..+..
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~ 46 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL 46 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 4333468999987 999999999999999999998 9998766554
No 453
>PRK08017 oxidoreductase; Provisional
Probab=95.27 E-value=0.051 Score=46.21 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=34.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|.+.++++++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 47999998 9999999999999999999999998766543
No 454
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.071 Score=45.54 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=35.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKS 47 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 47 (297)
++|.|.|+ |.+|..++..|++.|++|.+.+++++.++...+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~ 50 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAA 50 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 56778887 8999999999999999999999998876665433
No 455
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.055 Score=46.23 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=34.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|+|+ |.+|..++..|++.|++|.+++++++.++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL 41 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 57889987 9999999999999999999999998876655
No 456
>PRK10206 putative oxidoreductase; Provisional
Probab=95.26 E-value=0.051 Score=48.86 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred cEEEEECCChhHHH-HHHHHHH--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc
Q 022407 6 KVMGVVGSGQMGSG-IAQLGVM--DGLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD 81 (297)
Q Consensus 6 ~~V~iiG~G~mG~~-iA~~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 81 (297)
.||||||+|.++.. .+..+.. .+++|. ++|+++++.+.+ .+.+ .+.+.+|+++
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~-----------~~~~------------~~~~~~~~~e 58 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-----------PIYS------------HIHFTSDLDE 58 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH-----------HhcC------------CCcccCCHHH
Confidence 48999999997653 2333432 356765 789987543211 1111 1235667776
Q ss_pred -c--cCCcEEEEecccCHH
Q 022407 82 -L--HSADIIVEAIVESED 97 (297)
Q Consensus 82 -~--~~aD~Vi~~v~e~~~ 97 (297)
+ .+.|+|+.|+|...+
T Consensus 59 ll~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 59 VLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred HhcCCCCCEEEEeCCchHH
Confidence 4 368999999998776
No 457
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.25 E-value=0.058 Score=46.22 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-.-+++.|.|+ |.+|..+|..|++.|++|.+.+++.+.++.+
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4323367888887 7899999999999999999999998765543
No 458
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.24 E-value=0.027 Score=53.94 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=30.0
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
..|.|||+|.+|.++|..|++.|++|+++|++
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999974
No 459
>PRK07208 hypothetical protein; Provisional
Probab=95.24 E-value=0.025 Score=53.11 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=32.3
Q ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCcEEEEeCCH
Q 022407 1 MEEKMKVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDP 38 (297)
Q Consensus 1 M~~~~~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~ 38 (297)
|++ .++|.|||+|.-|...|..|.++|++|++++.++
T Consensus 1 ~~~-~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 1 MTN-KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCC-CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 443 3579999999999999999999999999999754
No 460
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.23 E-value=0.065 Score=39.99 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=34.6
Q ss_pred CCChhHHHHHHHHHHC----CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc--
Q 022407 12 GSGQMGSGIAQLGVMD----GLDVW-LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH-- 83 (297)
Q Consensus 12 G~G~mG~~iA~~l~~~----G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-- 83 (297)
|+|.||+.++..+.+. +++|. ++|++ ..+..... .. .......+++++ +.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~---------~~------------~~~~~~~~~~~~~~~~~ 58 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA---------AS------------FPDEAFTTDLEELIDDP 58 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH---------HH------------HTHSCEESSHHHHHTHT
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh---------hh------------cccccccCCHHHHhcCc
Confidence 8999999999999876 56655 67877 21110000 00 011235667766 55
Q ss_pred CCcEEEEeccc
Q 022407 84 SADIIVEAIVE 94 (297)
Q Consensus 84 ~aD~Vi~~v~e 94 (297)
+.|+||||.+.
T Consensus 59 ~~dvvVE~t~~ 69 (117)
T PF03447_consen 59 DIDVVVECTSS 69 (117)
T ss_dssp T-SEEEE-SSC
T ss_pred CCCEEEECCCc
Confidence 79999999543
No 461
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.39 Score=41.07 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=34.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..++..|++.|++|.+.++++++++..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV 50 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 67888887 6899999999999999999999998776554
No 462
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.23 E-value=0.045 Score=52.11 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=35.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+|-+|++++..|++.|.+|++++|+.++.+.+
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~l 418 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL 418 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 579999999999999999999999999999998877665
No 463
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.077 Score=49.63 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=30.6
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
||.|||+|..|.+.|..|++.|++|.++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998754
No 464
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.4 Score=41.24 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=33.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+ |.+|..++..|++.|++|.+++++++.++..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQT 40 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36888886 9999999999999999999999998766554
No 465
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.22 E-value=0.078 Score=46.46 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=35.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATK 46 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 46 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.+|+.+.++...+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 57888887 999999999999999999999999887766543
No 466
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.21 E-value=0.066 Score=45.64 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=34.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..+|..|++.|++|.+.+++.+..+..
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~ 46 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLA 46 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 57888887 9999999999999999999999998876654
No 467
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.21 E-value=0.3 Score=41.78 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=34.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|.|+ |.+|..+|..|++.|++|.+.+++++.++.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL 46 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 57888887 7899999999999999999999998776554
No 468
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.21 E-value=0.079 Score=44.49 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=36.4
Q ss_pred CCCCCcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 1 MEEKMKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 1 M~~~~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|.-.-++|.|.|+ |.+|..++..|++.|++|++.+++++..+.+
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4323468999988 8899999999999999999999998766544
No 469
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.20 E-value=0.31 Score=42.10 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=34.8
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
.++|.|.|+ |.+|..++..|++.|++|++.++++++++.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 357889987 9999999999999999999999998765543
No 470
>PRK08643 acetoin reductase; Validated
Probab=95.19 E-value=0.45 Score=40.41 Aligned_cols=39 Identities=36% Similarity=0.401 Sum_probs=33.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|+|+ |.+|..++..|++.|++|.+.++++++.+..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~ 42 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAA 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46778877 8999999999999999999999998776654
No 471
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.19 E-value=0.025 Score=48.00 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCcEEEEECCChhHHHHHHHHHHCC-----------CcEEEEeCCH
Q 022407 4 KMKVMGVVGSGQMGSGIAQLGVMDG-----------LDVWLVDTDP 38 (297)
Q Consensus 4 ~~~~V~iiG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~ 38 (297)
+..+|.|||+|-.|+.++..|++.| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3468999999999999999999874 2899999754
No 472
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.18 E-value=0.06 Score=45.69 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.3
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+|.|+|+ |.+|..+|..|++.|++|.+.+++++.++..
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~ 40 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL 40 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 47889987 9999999999999999999999998876554
No 473
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.16 E-value=0.15 Score=47.29 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=30.3
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||.|..|.++|..|.+.|++|++.|..+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 589999999999999999999999999997654
No 474
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.16 E-value=0.031 Score=47.66 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=31.1
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|+|||+|.-|..-|..|..+|++|+++|.+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 3599999999999999999999999999998754
No 475
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.5 Score=42.25 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=35.0
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRAT 45 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 45 (297)
++|.|.|+ |-+|..+|..|++.|++|++.++++++++...
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 57888887 89999999999999999999999988766553
No 476
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.074 Score=44.51 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=33.9
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVR 43 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 43 (297)
++|.|.|+ |.+|..++..|++.|++|.+.+|++++...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 68999987 999999999999999999999998876544
No 477
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.14 E-value=0.16 Score=44.81 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=30.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~ 44 (297)
++|.|+|+|.+|...++.+...|.+ |.++|.++++++.+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 5799999999999877777778987 55778887765543
No 478
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.12 E-value=0.25 Score=44.24 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=33.5
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 44 (297)
++|.|+|+|.+|...++.+...|. +|++.|+++++++.+
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a 210 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA 210 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence 689999999999988877777898 588999999887765
No 479
>PRK08328 hypothetical protein; Provisional
Probab=95.12 E-value=0.031 Score=47.24 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=32.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDPDALVR 43 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~ 43 (297)
.+|.|+|+|-.|+.++..|+.+|. +++++|.+.-....
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sN 66 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSN 66 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhh
Confidence 589999999999999999999998 69999977544333
No 480
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.10 E-value=0.07 Score=45.68 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=36.2
Q ss_pred cEEEEECC-C-hhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407 6 KVMGVVGS-G-QMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 6 ~~V~iiG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 48 (297)
+++.|.|+ | .+|..++..|++.|++|++.+++.++++...+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 67889997 6 5999999999999999999999988776654433
No 481
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.10 E-value=0.09 Score=49.83 Aligned_cols=128 Identities=18% Similarity=0.300 Sum_probs=70.4
Q ss_pred cEEEEECCChhHHHHHHHHHH-----CCC-------cEEEEeCCHHHHHHHHHH-HHHHHHHHHHcCCCChhhhcccCCc
Q 022407 6 KVMGVVGSGQMGSGIAQLGVM-----DGL-------DVWLVDTDPDALVRATKS-ISSSIQKFVSKGQLSQAMGTDAPRR 72 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~-----~G~-------~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 72 (297)
.||.|+|+|.-|.++|..|.. .|. +++++|+..--.+ -+.. +......+....
T Consensus 322 ~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~-~r~~~l~~~k~~fa~~~------------- 387 (581)
T PLN03129 322 QRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTK-SRKDSLQPFKKPFAHDH------------- 387 (581)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeC-CCCccChHHHHHHHhhc-------------
Confidence 689999999999999998877 476 7888887531100 0000 111111111111
Q ss_pred eEEecCccc-ccC--CcEEEEecccCHHHHHHHHHHHHhhccCCeEEe-ecCCC---ccHHHHhhhcCCCCeEEEeecCC
Q 022407 73 LRCTSNLKD-LHS--ADIIVEAIVESEDVKKKLFSELDKITKASAILA-SNTSS---ISITRLASATSRPCQVIGMHFMN 145 (297)
Q Consensus 73 i~~~~~~~~-~~~--aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~-s~ts~---~~~~~l~~~~~~~~~~~g~h~~~ 145 (297)
....++.+ ++. +|++|=+-.-.-...+++++.+.++++.-.|+. ||..+ ..+++..+......-|....+|.
T Consensus 388 -~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~ 466 (581)
T PLN03129 388 -EPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFD 466 (581)
T ss_pred -ccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCC
Confidence 01235555 666 788885442222346788888888876666665 44332 22344444433233444456676
Q ss_pred CCC
Q 022407 146 PPP 148 (297)
Q Consensus 146 p~~ 148 (297)
|..
T Consensus 467 pv~ 469 (581)
T PLN03129 467 PVE 469 (581)
T ss_pred Cee
Confidence 653
No 482
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.067 Score=46.31 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=34.7
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|..+|..|++.|++|++.+++++.++.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL 44 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 57889998 9999999999999999999999998876544
No 483
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.08 E-value=0.59 Score=39.94 Aligned_cols=90 Identities=29% Similarity=0.353 Sum_probs=55.1
Q ss_pred CcEEEEECCChhHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccccc
Q 022407 5 MKVMGVVGSGQMGSGIAQLGVMDGLD-VWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKDLH 83 (297)
Q Consensus 5 ~~~V~iiG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (297)
-++|.-||+|. |. ++..+++.|.. |+.+|+++..++.+++..+. .+. . .++..... +.
T Consensus 120 ~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~-------~~~-~--------~~~~~~~~--~~- 178 (250)
T PRK00517 120 GKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAEL-------NGV-E--------LNVYLPQG--DL- 178 (250)
T ss_pred CCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-------cCC-C--------ceEEEccC--CC-
Confidence 46899999998 64 55566777775 99999999988877543321 111 0 11111111 11
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEe
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILA 117 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~ 117 (297)
..|+|+.... .+....++.++.+.++++..++
T Consensus 179 ~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~li 210 (250)
T PRK00517 179 KADVIVANIL--ANPLLELAPDLARLLKPGGRLI 210 (250)
T ss_pred CcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEE
Confidence 4788876543 2334566777777777766544
No 484
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=95.08 E-value=0.027 Score=51.68 Aligned_cols=33 Identities=30% Similarity=0.594 Sum_probs=30.7
Q ss_pred EEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 7 VMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 7 ~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
+|.|||+|.-|+..|..|+++|++|.++|+...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 799999999999999999999999999998643
No 485
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=95.06 E-value=0.085 Score=45.57 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=33.8
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|.|+ |.+|..++..|++.|++|.+++++.+..+..
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV 50 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56778887 8999999999999999999999998766554
No 486
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.045 Score=47.37 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=50.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||- ..+|.++|..|.+.|..|+++.... .++.+ ++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------------------------------~dl~~~~k 200 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------------------------------TDLKSHTT 200 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------------------------------CCHHHHhh
Confidence 68999998 5679999999999999999886432 23333 57
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++. .+++++++++.
T Consensus 201 ~ADIvIsAvGkp~~i~~-------~~vk~gavVID 228 (282)
T PRK14180 201 KADILIVAVGKPNFITA-------DMVKEGAVVID 228 (282)
T ss_pred hcCEEEEccCCcCcCCH-------HHcCCCcEEEE
Confidence 89999999975443332 45677887763
No 487
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.062 Score=45.00 Aligned_cols=38 Identities=34% Similarity=0.278 Sum_probs=33.9
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
|+.|.|+ |.+|..++..|++.|++|++.++++++++..
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~ 40 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVA 40 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6889987 8999999999999999999999998876654
No 488
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.05 E-value=0.037 Score=45.62 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 589999999999999999999998 599999764
No 489
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.04 E-value=0.034 Score=52.69 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=30.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
-.|.|||+|..|.++|..|++.|++|.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 46999999999999999999999999999986
No 490
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.02 E-value=0.025 Score=51.46 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=31.6
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCCHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTDPD 39 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 39 (297)
..|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999998765
No 491
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.02 E-value=0.038 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCC-cEEEEeCCH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGL-DVWLVDTDP 38 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 38 (297)
.+|.|+|+|.+|+.++..|+.+|. +++++|.+.
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 589999999999999999999998 599999763
No 492
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.01 E-value=0.035 Score=52.72 Aligned_cols=32 Identities=38% Similarity=0.518 Sum_probs=30.2
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeCC
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDTD 37 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~~ 37 (297)
-.|.|||+|..|.++|..+++.|++|.++|++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999985
No 493
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.01 E-value=0.34 Score=43.52 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.4
Q ss_pred cEEEEECCChhHHHHHHHHHHCCCcEEEEeC---CHHHHHHH
Q 022407 6 KVMGVVGSGQMGSGIAQLGVMDGLDVWLVDT---DPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~G~mG~~iA~~l~~~G~~V~~~d~---~~~~~~~~ 44 (297)
.+|.|+|+|.+|...++.+...|.+|+++++ ++++.+.+
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 6899999999999888887788999999998 56665543
No 494
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.01 E-value=0.048 Score=47.62 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=50.2
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||- ..+|.++|..|.+.|..|+++.... .++++ ++
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------------------------------~nl~~~~~ 209 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------------------------------PDPESIVR 209 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------------------------------CCHHHHHh
Confidence 78999998 5569999999999999999996431 23333 67
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++. ++++++++++.
T Consensus 210 ~ADIvv~AvGk~~~i~~-------~~vk~gavVID 237 (299)
T PLN02516 210 EADIVIAAAGQAMMIKG-------DWIKPGAAVID 237 (299)
T ss_pred hCCEEEEcCCCcCccCH-------HHcCCCCEEEE
Confidence 89999999965433333 35677887663
No 495
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.01 E-value=0.084 Score=44.42 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred CCCCCcEEEEE-CC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Q 022407 1 MEEKMKVMGVV-GS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSI 48 (297)
Q Consensus 1 M~~~~~~V~ii-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 48 (297)
|.....||.+| |+ .-+|.++|..|+++|++|.+..|+.++++++...+
T Consensus 1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~ 50 (246)
T COG4221 1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI 50 (246)
T ss_pred CCCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh
Confidence 54433455555 88 67899999999999999999999999998875443
No 496
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.00 E-value=0.22 Score=42.31 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=33.6
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
+++.|.|+ |.+|..++..|++.|++|.+.+++.+.++..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~ 41 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEA 41 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46788887 7799999999999999999999998766554
No 497
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.00 E-value=0.059 Score=45.94 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=33.9
Q ss_pred CcEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHH
Q 022407 5 MKVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALV 42 (297)
Q Consensus 5 ~~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 42 (297)
.++|.|+|+ |.+|+.++..|++.|++|++..|++++..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 478999996 99999999999999999999999887543
No 498
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.99 E-value=0.048 Score=48.87 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=73.2
Q ss_pred EEEEECC-ChhHHHHHHHHHHCCCcEE---EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEec-Cccc
Q 022407 7 VMGVVGS-GQMGSGIAQLGVMDGLDVW---LVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTS-NLKD 81 (297)
Q Consensus 7 ~V~iiG~-G~mG~~iA~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~ 81 (297)
||+|||+ |..|..+...|.++||++. ++.++.+.-... .-.| ..+.+.+ +.++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~-----------~~~~-----------~~~~~~~~~~~~ 58 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV-----------TFKG-----------KELEVNEAKIES 58 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee-----------eeCC-----------eeEEEEeCChHH
Confidence 5899997 9999999999999988743 443432211111 0000 1122221 2234
Q ss_pred ccCCcEEEEecccCHHHHHHHHHHHHhhccCCeEEeecCCCccHHHHhhhcCCCCeEEEeecCCCCCCCcc--eeEecCC
Q 022407 82 LHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASATSRPCQVIGMHFMNPPPLMKL--VEVIRGA 159 (297)
Q Consensus 82 ~~~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~~~l~~~~~~~~~~~g~h~~~p~~~~~~--vev~~~~ 159 (297)
++++|+||+|.+.... .++..++ ...+++|+++++.+..+. ..| .++.-+|+..+... -.++..+
T Consensus 59 ~~~~D~v~~a~g~~~s--~~~a~~~---~~~G~~VID~ss~~R~~~-----~~p---~~vpevN~~~i~~~~~~~iianp 125 (339)
T TIGR01296 59 FEGIDIALFSAGGSVS--KEFAPKA---AKCGAIVIDNTSAFRMDP-----DVP---LVVPEVNLEDLKEFNTKGIIANP 125 (339)
T ss_pred hcCCCEEEECCCHHHH--HHHHHHH---HHCCCEEEECCHHHhCCC-----CCC---EEeCCcCHHHHhhCccCCEEECC
Confidence 6899999999986543 3333333 334667776766432211 011 23332332211110 1156666
Q ss_pred CChHHHH-HHHHHHHHHhCCeEEEe
Q 022407 160 DTSDETF-RATKALAERFGKTVVCS 183 (297)
Q Consensus 160 ~~~~~~~-~~~~~l~~~lG~~~v~~ 183 (297)
++..... -.+.++.+..+-.-+.+
T Consensus 126 ~C~~t~~~l~l~pL~~~~~i~~i~v 150 (339)
T TIGR01296 126 NCSTIQMVVVLKPLHDEAKIKRVVV 150 (339)
T ss_pred CcHHHHHHHHHHHHHHhcCccEEEE
Confidence 6654443 44566666555443433
No 499
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.99 E-value=0.048 Score=47.23 Aligned_cols=68 Identities=31% Similarity=0.311 Sum_probs=50.4
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccCCceEEecCccc-cc
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRATKSISSSIQKFVSKGQLSQAMGTDAPRRLRCTSNLKD-LH 83 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (297)
++|+|||- ..+|.++|..|.+.|..|++++... .++.+ ++
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------------------------------~~l~~~~~ 201 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------------------------------QNLPSIVR 201 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------------------------------CCHHHHHh
Confidence 68999998 6679999999999999999987432 23333 56
Q ss_pred CCcEEEEecccCHHHHHHHHHHHHhhccCCeEEee
Q 022407 84 SADIIVEAIVESEDVKKKLFSELDKITKASAILAS 118 (297)
Q Consensus 84 ~aD~Vi~~v~e~~~~k~~~~~~l~~~~~~~~ii~s 118 (297)
.||+||.++.-..-++ .++++++++++.
T Consensus 202 ~ADIvIsAvGk~~~i~-------~~~ik~gavVID 229 (284)
T PRK14177 202 QADIIVGAVGKPEFIK-------ADWISEGAVLLD 229 (284)
T ss_pred hCCEEEEeCCCcCccC-------HHHcCCCCEEEE
Confidence 8999999997444333 245678887764
No 500
>PRK06194 hypothetical protein; Provisional
Probab=94.96 E-value=0.097 Score=45.43 Aligned_cols=39 Identities=36% Similarity=0.539 Sum_probs=34.1
Q ss_pred cEEEEECC-ChhHHHHHHHHHHCCCcEEEEeCCHHHHHHH
Q 022407 6 KVMGVVGS-GQMGSGIAQLGVMDGLDVWLVDTDPDALVRA 44 (297)
Q Consensus 6 ~~V~iiG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 44 (297)
++|.|.|+ |.+|+.++..|++.|++|+++|++.+.++..
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~ 46 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRA 46 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 57888886 8999999999999999999999998766554
Done!