BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022409
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From
Arabidosis Thaliana
Length = 129
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 23/113 (20%)
Query: 105 LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLS 164
L+ LDVR E + G+I +P + G +S
Sbjct: 30 LAGHRYLDVRTPEEFSQGHACGAINVPYMN-----------------------RGASGMS 66
Query: 165 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217
N FL +V + ++IV CQ G RS+ A L +AG+ + + GG A
Sbjct: 67 KNTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 36/107 (33%)
Query: 110 LLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 169
L+DVR E K+ IKGSI IP+ ++ D
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRL------------------------------ 535
Query: 170 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216
E++P D D+ + CQ G R A L GY+ + V GG +
Sbjct: 536 -----EEVPVDKDIYITCQLGXRGYVAARXLXEKGYK-VKNVDGGFK 576
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 35/104 (33%)
Query: 110 LLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 169
LLDVR E + ++G++ IP+ ++ D
Sbjct: 489 LLDVRNPGELQNGGLEGAVNIPVDELRDR------------------------------- 517
Query: 170 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 213
+LPKD ++I+ CQ GLR A L N GYR + G
Sbjct: 518 ----XHELPKDKEIIIFCQVGLRGNVAYRQLVNNGYRARNLIGG 557
>pdb|2FSX|A Chain A, Crystal Structure Of Rv0390 From M. Tuberculosis
Length = 148
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 164 SYNKQFLSKVEEKLPKDTD-----LIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217
++N FL+++ +++P D D +I C+ G RS+ A E+ AG + V G E
Sbjct: 59 THNDNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEG 117
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 35/106 (33%)
Query: 108 KTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167
+ LLDVR E + ++G++ IP+ ++ D
Sbjct: 487 QLLLDVRNPGELQNGGLEGAVNIPVDELRDRM---------------------------- 518
Query: 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 213
+LPKD ++I+ Q GLR A L N GYR + G
Sbjct: 519 -------HELPKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGG 557
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 35/104 (33%)
Query: 110 LLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQF 169
LLDVR E + ++G++ IP+ ++ D
Sbjct: 489 LLDVRNPGELQNGGLEGAVNIPVDELRDR------------------------------- 517
Query: 170 LSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 213
+LPKD ++I+ Q GLR A L N GYR + G
Sbjct: 518 ----XHELPKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGG 557
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 102 AVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 161
A++L +DVR E ++ I +I P+F ++ + G++ + G
Sbjct: 12 ALKLDKVIFVDVRTEGEYEEDHILNAINXPLFKNNEHNEVGTIYKXQGKH--EAIQKGFD 69
Query: 162 TLSYNKQ--FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217
+SY + +L E L D +I + G RS + LL + G N++ ++GG +A
Sbjct: 70 YVSYKLKDIYLQAAELALNYDNIVIYCARGGXRSGSIVNLLSSLGV-NVYQLEGGYKA 126
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 173 VEEKLP--KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGG 214
+E LP K+ + V CQ G+RS A +L + GY N+ V G
Sbjct: 416 LETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEG 459
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 233 FAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTYVIIHAMD--------SLY---VGN 281
F GGL S LC+ F + P + ++ ++I MD ++Y
Sbjct: 358 FRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTMYWNVTSM 417
Query: 282 LRNWWNILEIIKDIE 296
L NWW + II++ E
Sbjct: 418 LNNWWYRVAIIREGE 432
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 221 EDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTYVIIHAMD----- 275
ED RE F GGL S LC+ F + P + ++ ++I MD
Sbjct: 299 EDRYREAGY---FRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMV 355
Query: 276 ---SLY---VGNLRNWWNILEIIKDIE 296
++Y L NWW + II++ E
Sbjct: 356 QPRTMYWNVTSMLNNWWYRVAIIREGE 382
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 162 TLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 221
+L+ K L +V++ + + T IV K L +A G LFW QGGL A +E
Sbjct: 368 SLASGKSLLHEVDKDISQLTQAIVKNHKNLLKIAQYAAQNRRGLDLLFWEQGGLCKALQE 427
>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn
Length = 108
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217
DT ++V C G S A + L GY ++ + GG EA
Sbjct: 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95
>pdb|3C8O|A Chain A, The Crystal Structure Of Rraa From Pao1
pdb|3C8O|B Chain B, The Crystal Structure Of Rraa From Pao1
Length = 162
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 49 IAPSFNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKVKVLTPREAGYAVQLSSK 108
+ P F+ G R GGE +K D + K++ D +DGK KVL G L
Sbjct: 19 VEPMFSNFGGRDSFGGEIVTIKCFEDNSLVKEQVD---KDGKGKVLVVDGGG---SLRRA 72
Query: 109 TLLDVRPSTERKKAWIKGSIWIPIFDID 136
L D+ K W ++ I D+D
Sbjct: 73 LLGDMLAEKAAKNGWEGIVVYGCIRDVD 100
>pdb|3C1Y|A Chain A, Structure Of Bacterial Dna Damage Sensor Protein With Co-
Purified And Co-Crystallized Ligand
pdb|3C1Y|B Chain B, Structure Of Bacterial Dna Damage Sensor Protein With Co-
Purified And Co-Crystallized Ligand
pdb|3C1Z|A Chain A, Structure Of The Ligand-Free Form Of A Bacterial Dna
Damage Sensor Protein
pdb|3C1Z|B Chain B, Structure Of The Ligand-Free Form Of A Bacterial Dna
Damage Sensor Protein
pdb|3C21|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
Reaction Product
pdb|3C21|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
Reaction Product
pdb|3C23|A Chain A, Structure Of A Bacterial Dna Damage Sensor Protein With
Non- Reactive Ligand
pdb|3C23|B Chain B, Structure Of A Bacterial Dna Damage Sensor Protein With
Non- Reactive Ligand
Length = 377
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAW---IKGSIWIPIFDIDDTFDAGSLPQK 147
VK L P+E ++L S P TE +KA I + IF +DD P+K
Sbjct: 23 VKSLVPQELIEKIKLIS-------PGTELRKALDDIINANFGALIFLVDD-------PKK 68
Query: 148 VTNFVMGGWW 157
+ + GG+W
Sbjct: 69 YEDVIQGGFW 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,951,898
Number of Sequences: 62578
Number of extensions: 371436
Number of successful extensions: 804
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 19
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)