Query 022409
Match_columns 297
No_of_seqs 251 out of 1929
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11784 tRNA 2-selenouridine 99.9 3.2E-26 6.9E-31 219.2 9.0 158 96-259 5-167 (345)
2 TIGR03167 tRNA_sel_U_synt tRNA 99.9 6.4E-26 1.4E-30 214.4 7.8 147 107-258 2-152 (311)
3 cd01518 RHOD_YceA Member of th 99.9 3.1E-23 6.8E-28 164.0 8.9 100 92-220 2-101 (101)
4 cd01520 RHOD_YbbB Member of th 99.9 5.7E-23 1.2E-27 170.1 7.7 124 94-221 1-127 (128)
5 KOG1530 Rhodanese-related sulf 99.9 5.7E-22 1.2E-26 163.3 10.8 114 89-225 20-134 (136)
6 cd01527 RHOD_YgaP Member of th 99.9 1E-21 2.3E-26 154.4 10.3 98 92-225 2-99 (99)
7 PLN02160 thiosulfate sulfurtra 99.9 1.4E-21 3.1E-26 164.0 11.4 115 89-227 12-128 (136)
8 PRK01415 hypothetical protein; 99.9 3.7E-22 8.1E-27 182.9 8.2 136 47-223 79-214 (247)
9 cd01533 4RHOD_Repeat_2 Member 99.9 4.1E-22 8.9E-27 159.8 7.3 101 89-222 7-109 (109)
10 PRK00162 glpE thiosulfate sulf 99.9 6.6E-22 1.4E-26 158.4 8.5 104 89-227 2-105 (108)
11 cd01522 RHOD_1 Member of the R 99.9 2.8E-21 6.1E-26 157.7 9.7 114 94-232 1-116 (117)
12 cd01523 RHOD_Lact_B Member of 99.8 3.5E-21 7.6E-26 151.8 9.5 98 94-219 1-99 (100)
13 cd01519 RHOD_HSP67B2 Member of 99.8 2.1E-20 4.5E-25 148.2 9.1 102 95-219 2-105 (106)
14 cd01526 RHOD_ThiF Member of th 99.8 1.7E-20 3.6E-25 153.8 8.7 111 89-224 5-117 (122)
15 cd01534 4RHOD_Repeat_3 Member 99.8 1.1E-20 2.3E-25 148.0 6.7 92 94-219 1-94 (95)
16 cd01447 Polysulfide_ST Polysul 99.8 3E-20 6.5E-25 146.1 9.2 101 94-221 1-102 (103)
17 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.7E-20 3.7E-25 145.9 7.3 91 94-219 2-95 (96)
18 PRK05320 rhodanese superfamily 99.8 1.9E-20 4.2E-25 172.8 8.9 135 46-221 76-216 (257)
19 cd01528 RHOD_2 Member of the R 99.8 2E-20 4.4E-25 147.9 7.5 97 93-221 1-99 (101)
20 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 9.6E-20 2.1E-24 157.3 12.2 114 89-225 33-162 (162)
21 PF00581 Rhodanese: Rhodanese- 99.8 6.5E-20 1.4E-24 145.2 9.6 108 95-221 1-113 (113)
22 cd01525 RHOD_Kc Member of the 99.8 5.7E-20 1.2E-24 145.6 8.8 102 94-219 1-104 (105)
23 cd01530 Cdc25 Cdc25 phosphatas 99.8 3.4E-20 7.4E-25 152.5 7.2 98 92-219 2-120 (121)
24 cd01448 TST_Repeat_1 Thiosulfa 99.8 3E-19 6.5E-24 145.5 11.9 112 94-222 2-122 (122)
25 cd01521 RHOD_PspE2 Member of t 99.8 1.8E-19 3.9E-24 145.0 9.3 100 91-225 7-110 (110)
26 cd01524 RHOD_Pyr_redox Member 99.8 7.7E-20 1.7E-24 141.8 6.8 89 94-219 1-89 (90)
27 cd01449 TST_Repeat_2 Thiosulfa 99.8 1.6E-19 3.5E-24 145.9 8.6 104 94-219 1-117 (118)
28 smart00450 RHOD Rhodanese Homo 99.8 2.2E-19 4.7E-24 138.0 8.4 97 106-224 3-100 (100)
29 cd01529 4RHOD_Repeats Member o 99.8 4.9E-19 1.1E-23 138.7 8.5 87 105-220 10-96 (96)
30 COG0607 PspE Rhodanese-related 99.8 2.7E-18 5.8E-23 136.2 10.0 90 104-226 17-107 (110)
31 cd01531 Acr2p Eukaryotic arsen 99.8 1.8E-18 3.9E-23 139.7 9.0 101 91-221 1-112 (113)
32 PRK00142 putative rhodanese-re 99.8 1.8E-18 4E-23 163.9 10.2 132 50-221 81-212 (314)
33 cd01532 4RHOD_Repeat_1 Member 99.7 1.9E-18 4E-23 134.9 6.7 84 103-220 6-92 (92)
34 cd00158 RHOD Rhodanese Homolog 99.7 1.7E-18 3.7E-23 131.4 6.2 87 100-219 3-89 (89)
35 COG1054 Predicted sulfurtransf 99.7 1.3E-18 2.8E-23 161.3 6.1 135 46-221 78-213 (308)
36 PRK08762 molybdopterin biosynt 99.7 4.5E-18 9.7E-23 164.7 8.8 103 91-228 2-105 (376)
37 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 6.6E-18 1.4E-22 136.5 8.3 99 92-220 2-113 (113)
38 cd01535 4RHOD_Repeat_4 Member 99.7 4.1E-18 9E-23 144.6 7.1 86 107-227 11-96 (145)
39 PRK11493 sseA 3-mercaptopyruva 99.7 4.1E-17 8.9E-22 152.0 12.4 118 92-227 5-135 (281)
40 cd01445 TST_Repeats Thiosulfat 99.7 4.3E-17 9.4E-22 137.2 10.3 108 94-219 1-137 (138)
41 TIGR02981 phageshock_pspE phag 99.7 2.1E-17 4.5E-22 132.3 6.1 80 106-220 17-97 (101)
42 PRK07878 molybdopterin biosynt 99.7 8E-17 1.7E-21 157.0 9.5 102 89-223 284-386 (392)
43 PLN02723 3-mercaptopyruvate su 99.7 2E-16 4.3E-21 150.3 11.8 118 92-227 22-151 (320)
44 PRK10287 thiosulfate:cyanide s 99.7 4.3E-17 9.3E-22 131.2 5.8 80 106-220 19-99 (104)
45 PRK09629 bifunctional thiosulf 99.7 3.2E-16 7E-21 160.3 12.6 119 91-227 8-129 (610)
46 PRK07411 hypothetical protein; 99.7 1E-16 2.2E-21 156.1 8.5 106 89-225 279-386 (390)
47 PLN02723 3-mercaptopyruvate su 99.7 2.4E-16 5.3E-21 149.7 9.5 112 94-226 192-316 (320)
48 PRK11493 sseA 3-mercaptopyruva 99.7 2.7E-16 5.9E-21 146.5 9.3 112 93-226 154-278 (281)
49 PRK05597 molybdopterin biosynt 99.6 1.2E-15 2.6E-20 147.0 8.8 97 89-220 258-354 (355)
50 PRK09629 bifunctional thiosulf 99.6 3.3E-15 7.3E-20 152.8 10.9 113 92-226 147-270 (610)
51 cd01446 DSP_MapKP N-terminal r 99.6 5.2E-15 1.1E-19 122.5 9.1 114 93-221 1-127 (132)
52 PRK05600 thiamine biosynthesis 99.6 1.7E-15 3.6E-20 146.7 6.8 95 92-216 271-369 (370)
53 COG2897 SseA Rhodanese-related 99.6 1.2E-14 2.7E-19 135.8 9.7 114 91-226 155-281 (285)
54 COG2897 SseA Rhodanese-related 99.5 2.7E-13 5.8E-18 126.9 12.1 120 90-227 9-138 (285)
55 PRK01269 tRNA s(4)U8 sulfurtra 99.3 2.8E-12 6E-17 128.3 6.3 73 106-213 406-482 (482)
56 KOG3772 M-phase inducer phosph 99.2 1.3E-11 2.8E-16 116.4 6.4 109 89-225 153-280 (325)
57 COG2603 Predicted ATPase [Gene 99.2 1.8E-12 3.8E-17 120.1 -2.0 150 99-252 7-160 (334)
58 KOG2017 Molybdopterin synthase 99.1 1.7E-10 3.7E-15 109.4 6.3 104 89-222 314-420 (427)
59 KOG1529 Mercaptopyruvate sulfu 99.0 5.3E-09 1.1E-13 97.1 11.4 118 92-227 5-136 (286)
60 COG5105 MIH1 Mitotic inducer, 98.8 1.4E-08 3.1E-13 95.4 9.0 105 88-225 238-362 (427)
61 KOG1529 Mercaptopyruvate sulfu 98.5 2.1E-07 4.6E-12 86.5 6.9 93 106-220 171-275 (286)
62 TIGR01244 conserved hypothetic 96.9 0.0047 1E-07 51.6 7.6 88 91-205 12-112 (135)
63 PF04273 DUF442: Putative phos 96.6 0.0075 1.6E-07 49.0 7.1 84 91-201 12-107 (110)
64 cd00127 DSPc Dual specificity 94.3 0.14 3.1E-06 41.7 6.4 78 107-206 28-110 (139)
65 PF13350 Y_phosphatase3: Tyros 93.3 0.055 1.2E-06 46.3 2.3 119 85-206 21-152 (164)
66 KOG1093 Predicted protein kina 93.2 0.013 2.8E-07 59.7 -2.0 101 89-219 619-719 (725)
67 KOG1717 Dual specificity phosp 92.2 0.13 2.7E-06 48.2 3.2 154 93-267 5-175 (343)
68 smart00195 DSPc Dual specifici 91.8 0.6 1.3E-05 38.2 6.5 30 177-206 75-107 (138)
69 PLN02727 NAD kinase 89.0 1.5 3.3E-05 47.5 8.1 29 90-118 265-293 (986)
70 PF00782 DSPc: Dual specificit 88.7 1.1 2.3E-05 36.3 5.5 30 177-206 70-102 (133)
71 COG3453 Uncharacterized protei 84.5 4.3 9.4E-05 33.8 6.8 83 90-201 12-108 (130)
72 PRK00142 putative rhodanese-re 80.9 0.36 7.8E-06 46.1 -0.9 42 94-136 16-57 (314)
73 COG2453 CDC14 Predicted protei 80.5 2.7 5.8E-05 36.7 4.4 39 167-205 92-133 (180)
74 PF05706 CDKN3: Cyclin-depende 76.4 2.4 5.1E-05 37.1 2.8 36 169-204 122-159 (168)
75 PRK12361 hypothetical protein; 73.8 6.9 0.00015 40.0 5.9 32 171-202 166-200 (547)
76 KOG3636 Uncharacterized conser 72.8 4.2 9E-05 41.0 3.8 26 107-132 326-351 (669)
77 PF03853 YjeF_N: YjeF-related 68.3 10 0.00022 32.6 5.0 32 178-210 23-57 (169)
78 TIGR03167 tRNA_sel_U_synt tRNA 68.1 9.7 0.00021 36.4 5.2 36 90-125 134-172 (311)
79 COG4822 CbiK Cobalamin biosynt 66.8 15 0.00032 33.8 5.7 44 167-210 121-172 (265)
80 PF09992 DUF2233: Predicted pe 66.8 7.5 0.00016 33.1 3.8 42 178-219 98-144 (170)
81 TIGR00197 yjeF_nterm yjeF N-te 66.4 14 0.00031 32.9 5.6 39 172-211 37-78 (205)
82 COG2603 Predicted ATPase [Gene 66.1 0.066 1.4E-06 50.6 -9.7 59 92-150 127-186 (334)
83 PTZ00242 protein tyrosine phos 60.8 13 0.00027 32.1 4.1 19 178-196 96-115 (166)
84 PTZ00393 protein tyrosine phos 59.8 14 0.00031 34.2 4.4 40 167-206 157-198 (241)
85 COG0062 Uncharacterized conser 59.2 21 0.00046 32.2 5.3 42 171-213 38-85 (203)
86 PF01451 LMWPc: Low molecular 55.8 7.4 0.00016 31.8 1.8 36 183-218 1-41 (138)
87 COG1220 HslU ATP-dependent pro 55.1 6.2 0.00014 38.7 1.3 28 231-259 50-77 (444)
88 PRK10565 putative carbohydrate 55.0 26 0.00056 35.8 5.8 39 172-211 52-93 (508)
89 cd00079 HELICc Helicase superf 54.9 30 0.00064 26.8 5.1 48 168-216 16-63 (131)
90 PF13344 Hydrolase_6: Haloacid 53.6 23 0.0005 27.8 4.2 46 158-206 11-57 (101)
91 PLN03049 pyridoxine (pyridoxam 52.3 30 0.00065 34.9 5.7 30 181-211 60-92 (462)
92 PRK07688 thiamine/molybdopteri 51.3 14 0.00029 35.7 3.0 37 89-126 274-316 (339)
93 PLN03050 pyridoxine (pyridoxam 51.1 23 0.0005 32.7 4.3 30 181-211 61-93 (246)
94 PLN02918 pyridoxine (pyridoxam 49.2 35 0.00075 35.3 5.7 30 181-211 136-168 (544)
95 smart00012 PTPc_DSPc Protein t 48.7 34 0.00074 25.5 4.4 30 168-197 24-57 (105)
96 smart00404 PTPc_motif Protein 48.7 34 0.00074 25.5 4.4 30 168-197 24-57 (105)
97 TIGR02689 ars_reduc_gluta arse 46.8 28 0.00061 28.3 3.8 35 182-216 2-37 (126)
98 KOG1720 Protein tyrosine phosp 43.9 39 0.00085 30.8 4.5 40 166-206 134-176 (225)
99 smart00226 LMWPc Low molecular 42.5 22 0.00048 29.1 2.6 36 183-218 1-37 (140)
100 PF04722 Ssu72: Ssu72-like pro 42.3 36 0.00077 30.6 3.9 29 182-211 3-32 (195)
101 TIGR00853 pts-lac PTS system, 42.0 30 0.00065 27.1 3.1 40 180-220 3-46 (95)
102 PF13207 AAA_17: AAA domain; P 41.8 7 0.00015 30.7 -0.5 25 234-259 2-26 (121)
103 KOG1716 Dual specificity phosp 41.5 41 0.00089 31.4 4.5 30 177-206 152-184 (285)
104 PRK14665 mnmA tRNA-specific 2- 41.4 37 0.0008 33.1 4.3 31 178-209 3-33 (360)
105 PF00218 IGPS: Indole-3-glycer 40.9 22 0.00047 33.1 2.5 93 91-208 139-235 (254)
106 KOG0333 U5 snRNP-like RNA heli 40.2 46 0.001 34.5 4.8 35 180-215 517-551 (673)
107 cd05565 PTS_IIB_lactose PTS_II 39.5 33 0.00072 27.2 3.1 38 182-220 2-43 (99)
108 COG1077 MreB Actin-like ATPase 38.3 91 0.002 30.3 6.3 60 181-240 101-164 (342)
109 PRK13530 arsenate reductase; P 37.3 56 0.0012 27.0 4.2 36 181-216 4-40 (133)
110 PRK10310 PTS system galactitol 37.1 74 0.0016 24.7 4.7 38 182-220 4-46 (94)
111 cd02020 CMPK Cytidine monophos 36.8 14 0.0003 29.8 0.5 25 234-259 2-26 (147)
112 PRK10126 tyrosine phosphatase; 36.7 31 0.00068 28.8 2.7 37 181-218 3-40 (147)
113 PF13238 AAA_18: AAA domain; P 36.6 10 0.00022 29.6 -0.4 20 235-256 2-21 (129)
114 PF02302 PTS_IIB: PTS system, 36.2 42 0.00092 25.0 3.1 32 182-214 1-37 (90)
115 COG1737 RpiR Transcriptional r 35.9 1.1E+02 0.0024 28.4 6.5 30 267-296 243-273 (281)
116 PRK09590 celB cellobiose phosp 35.6 38 0.00083 27.1 2.9 37 182-219 3-43 (104)
117 TIGR02173 cyt_kin_arch cytidyl 34.9 15 0.00033 30.5 0.5 26 233-259 2-27 (171)
118 cd05564 PTS_IIB_chitobiose_lic 34.7 40 0.00087 26.2 2.8 37 182-219 1-41 (96)
119 KOG1615 Phosphoserine phosphat 34.4 59 0.0013 29.5 4.1 61 194-259 94-172 (227)
120 cd00047 PTPc Protein tyrosine 34.4 46 0.001 29.5 3.5 31 168-198 152-185 (231)
121 cd00115 LMWPc Substituted upda 34.0 50 0.0011 27.1 3.5 37 182-218 2-40 (141)
122 PF03193 DUF258: Protein of un 33.9 38 0.00083 29.3 2.8 50 195-253 3-56 (161)
123 PRK11391 etp phosphotyrosine-p 33.7 39 0.00084 28.3 2.8 37 181-218 3-40 (144)
124 PRK04182 cytidylate kinase; Pr 32.8 18 0.00039 30.3 0.5 25 234-259 3-27 (180)
125 PRK10499 PTS system N,N'-diace 32.7 58 0.0013 26.0 3.5 26 181-206 4-33 (106)
126 COG0394 Wzb Protein-tyrosine-p 32.0 70 0.0015 26.8 4.0 37 181-217 3-40 (139)
127 PRK13802 bifunctional indole-3 31.7 1.6E+02 0.0034 31.6 7.3 92 92-208 142-237 (695)
128 PRK13946 shikimate kinase; Pro 31.4 21 0.00046 30.8 0.8 29 230-259 9-37 (184)
129 PF14606 Lipase_GDSL_3: GDSL-l 31.4 97 0.0021 27.3 4.9 48 165-213 79-144 (178)
130 COG2185 Sbm Methylmalonyl-CoA 31.3 81 0.0018 26.9 4.3 40 177-216 60-103 (143)
131 TIGR01587 cas3_core CRISPR-ass 31.3 69 0.0015 30.2 4.4 48 169-216 211-259 (358)
132 COG5350 Predicted protein tyro 30.9 43 0.00092 29.2 2.5 26 175-200 88-114 (172)
133 PRK08349 hypothetical protein; 30.3 64 0.0014 28.2 3.7 27 182-209 2-28 (198)
134 PF00733 Asn_synthase: Asparag 29.9 89 0.0019 27.4 4.6 43 168-210 5-47 (255)
135 PTZ00110 helicase; Provisional 29.3 87 0.0019 32.1 5.0 37 179-216 376-412 (545)
136 PF14566 PTPlike_phytase: Inos 29.3 87 0.0019 26.3 4.2 28 166-194 111-139 (149)
137 PF02780 Transketolase_C: Tran 28.8 67 0.0014 25.7 3.3 29 178-206 7-37 (124)
138 PRK00131 aroK shikimate kinase 28.6 26 0.00056 29.0 0.9 28 231-259 4-31 (175)
139 PLN02460 indole-3-glycerol-pho 28.4 2.9E+02 0.0063 26.9 8.0 90 93-206 213-312 (338)
140 PRK13957 indole-3-glycerol-pho 28.4 2.4E+02 0.0051 26.2 7.2 89 92-206 133-225 (247)
141 PRK05298 excinuclease ABC subu 28.3 69 0.0015 33.7 4.1 51 165-216 431-481 (652)
142 PF02590 SPOUT_MTase: Predicte 28.3 93 0.002 26.7 4.2 45 172-216 59-108 (155)
143 TIGR00365 monothiol glutaredox 28.3 1.3E+02 0.0029 23.2 4.8 76 179-258 10-92 (97)
144 PRK13104 secA preprotein trans 28.2 63 0.0014 35.4 3.8 51 169-220 433-483 (896)
145 PF00102 Y_phosphatase: Protei 28.2 73 0.0016 27.6 3.7 31 167-197 156-188 (235)
146 PF03162 Y_phosphatase2: Tyros 27.8 59 0.0013 28.0 2.9 27 179-205 90-118 (164)
147 PF03668 ATP_bind_2: P-loop AT 27.8 24 0.00052 33.4 0.5 36 232-269 2-38 (284)
148 smart00194 PTPc Protein tyrosi 27.6 68 0.0015 29.0 3.5 31 167-197 179-211 (258)
149 PRK01565 thiamine biosynthesis 27.5 92 0.002 30.6 4.6 30 179-209 175-204 (394)
150 PRK05416 glmZ(sRNA)-inactivati 27.4 27 0.00059 32.9 0.9 28 230-259 5-32 (288)
151 COG0603 Predicted PP-loop supe 27.3 86 0.0019 28.7 4.0 31 181-212 3-33 (222)
152 TIGR02691 arsC_pI258_fam arsen 27.3 69 0.0015 26.2 3.2 34 183-216 1-35 (129)
153 PRK14738 gmk guanylate kinase; 27.2 30 0.00066 30.5 1.1 30 227-258 9-38 (206)
154 PLN02347 GMP synthetase 26.9 1.4E+02 0.003 30.9 5.9 52 165-217 214-268 (536)
155 cd05567 PTS_IIB_mannitol PTS_I 26.9 77 0.0017 23.9 3.2 36 182-218 2-42 (87)
156 PF06723 MreB_Mbl: MreB/Mbl pr 26.7 1.5E+02 0.0033 28.6 5.8 75 166-240 78-156 (326)
157 TIGR02189 GlrX-like_plant Glut 26.5 1.4E+02 0.003 23.3 4.6 34 179-212 6-41 (99)
158 PRK11192 ATP-dependent RNA hel 26.4 1.2E+02 0.0026 29.6 5.2 37 179-216 244-280 (434)
159 PRK10824 glutaredoxin-4; Provi 26.2 1.7E+02 0.0037 23.8 5.2 74 179-258 13-95 (115)
160 TIGR00631 uvrb excinuclease AB 26.2 84 0.0018 33.2 4.2 51 165-216 427-477 (655)
161 TIGR00268 conserved hypothetic 26.1 84 0.0018 28.7 3.8 32 177-209 9-40 (252)
162 PF02879 PGM_PMM_II: Phosphogl 25.9 1.5E+02 0.0032 22.8 4.8 33 180-213 21-53 (104)
163 PF00004 AAA: ATPase family as 25.5 23 0.0005 27.7 -0.0 24 235-259 2-25 (132)
164 COG0278 Glutaredoxin-related p 25.5 2.5E+02 0.0054 22.7 5.8 74 179-258 13-96 (105)
165 COG0237 CoaE Dephospho-CoA kin 25.3 33 0.00072 30.6 1.0 33 232-266 3-37 (201)
166 COG3414 SgaB Phosphotransferas 25.1 1E+02 0.0022 24.3 3.5 26 181-206 2-32 (93)
167 PRK00278 trpC indole-3-glycero 25.0 2.8E+02 0.0061 25.5 7.1 40 167-208 198-237 (260)
168 PRK04040 adenylate kinase; Pro 24.8 36 0.00078 29.8 1.1 35 232-268 3-39 (188)
169 PF03054 tRNA_Me_trans: tRNA m 24.1 66 0.0014 31.4 2.8 27 182-209 2-28 (356)
170 cd03028 GRX_PICOT_like Glutare 24.0 1.3E+02 0.0028 22.8 4.0 28 179-206 6-39 (90)
171 PRK08384 thiamine biosynthesis 23.7 1.1E+02 0.0024 30.2 4.3 34 180-214 180-215 (381)
172 PRK12906 secA preprotein trans 23.7 1.1E+02 0.0023 33.3 4.5 41 177-218 437-477 (796)
173 smart00382 AAA ATPases associa 23.6 36 0.00079 25.8 0.8 25 233-258 4-28 (148)
174 PRK12898 secA preprotein trans 23.6 1.1E+02 0.0024 32.4 4.6 37 179-216 472-508 (656)
175 PHA03050 glutaredoxin; Provisi 23.5 1.9E+02 0.0042 23.0 5.0 27 179-205 11-38 (108)
176 TIGR00963 secA preprotein tran 23.3 1.2E+02 0.0025 32.8 4.7 45 171-216 396-440 (745)
177 PRK09200 preprotein translocas 23.0 1.2E+02 0.0026 33.0 4.7 39 178-217 426-464 (790)
178 PF04343 DUF488: Protein of un 22.9 70 0.0015 25.8 2.4 20 96-115 2-22 (122)
179 COG5211 SSU72 RNA polymerase I 22.6 88 0.0019 27.4 3.0 31 180-211 6-37 (197)
180 PF14617 CMS1: U3-containing 9 22.6 1.3E+02 0.0028 28.0 4.3 40 164-203 101-149 (252)
181 TIGR00342 thiazole biosynthesi 22.5 1.4E+02 0.003 29.1 4.8 30 179-209 171-200 (371)
182 PRK14664 tRNA-specific 2-thiou 22.4 1.2E+02 0.0027 29.6 4.3 30 179-209 4-33 (362)
183 cd01991 Asn_Synthase_B_C The C 22.2 1.5E+02 0.0032 26.6 4.6 38 169-206 4-41 (269)
184 PRK13947 shikimate kinase; Pro 22.1 38 0.00082 28.3 0.7 26 233-259 3-28 (171)
185 KOG0330 ATP-dependent RNA heli 22.1 1.9E+02 0.0041 29.1 5.5 37 180-217 300-336 (476)
186 PRK00919 GMP synthase subunit 22.1 1.7E+02 0.0037 28.0 5.1 47 167-215 9-58 (307)
187 TIGR03714 secA2 accessory Sec 22.0 1.4E+02 0.003 32.3 4.9 47 171-218 415-461 (762)
188 PRK13107 preprotein translocas 21.7 97 0.0021 34.1 3.7 51 169-220 438-488 (908)
189 PRK14569 D-alanyl-alanine synt 21.5 1.8E+02 0.0038 27.1 5.1 73 181-259 4-84 (296)
190 TIGR00884 guaA_Cterm GMP synth 21.1 1.8E+02 0.004 27.7 5.1 47 167-215 4-53 (311)
191 COG0482 TrmU Predicted tRNA(5- 21.0 1.3E+02 0.0028 29.6 4.1 29 180-209 3-31 (356)
192 cd02811 IDI-2_FMN Isopentenyl- 20.9 3.1E+02 0.0067 26.2 6.7 103 180-294 178-308 (326)
193 PRK04837 ATP-dependent RNA hel 20.8 1.1E+02 0.0024 29.8 3.7 35 180-215 255-289 (423)
194 TIGR00640 acid_CoA_mut_C methy 20.7 1.8E+02 0.0039 24.1 4.4 46 166-214 42-91 (132)
195 COG2117 Predicted subunit of t 20.7 1.3E+02 0.0028 26.6 3.6 36 184-220 4-42 (198)
196 PF03215 Rad17: Rad17 cell cyc 20.6 49 0.0011 34.0 1.2 28 230-258 44-71 (519)
197 TIGR00537 hemK_rel_arch HemK-r 20.5 2.2E+02 0.0047 24.1 5.1 49 166-214 119-167 (179)
198 PRK06217 hypothetical protein; 20.5 43 0.00093 28.7 0.7 25 234-259 4-28 (183)
199 cd02022 DPCK Dephospho-coenzym 20.4 43 0.00093 28.7 0.7 31 234-266 2-34 (179)
200 COG3911 Predicted ATPase [Gene 20.2 56 0.0012 28.6 1.3 36 231-268 9-44 (183)
201 KOG2424 Protein involved in tr 20.2 1.2E+02 0.0026 27.1 3.3 29 182-211 7-36 (195)
202 cd01712 ThiI ThiI is required 20.1 1.4E+02 0.003 25.3 3.8 32 183-215 2-35 (177)
203 COG0513 SrmB Superfamily II DN 20.0 1.6E+02 0.0036 29.9 4.9 34 182-216 275-308 (513)
No 1
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.93 E-value=3.2e-26 Score=219.19 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=125.6
Q ss_pred HHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCc-cccHHHHHHHH
Q 022409 96 PREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSKVE 174 (297)
Q Consensus 96 ~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~-~~~~~f~~~~~ 174 (297)
..++.+++ .++.+|||||+|.||..||||||+|+|+.+++++..+||+|||.+.+.+.. .|.... ...++.+.+..
T Consensus 5 ~~~~~~~~-~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~--lg~~lv~~~l~~~~~~~~ 81 (345)
T PRK11784 5 AQDFRALF-LNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIA--LGHALVAGNIAAHREEAW 81 (345)
T ss_pred HHHHHHHH-hCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHH--hhhhhcchhHHHHHHHHH
Confidence 45555544 357899999999999999999999999999999999999999998654432 343332 23445544443
Q ss_pred hcCC-CCCeEEEEeC-CCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC--CCCCcccccCcccCcccchhhhc
Q 022409 175 EKLP-KDTDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG--PQPLKFAGIGGLSEFLGYTSQLC 250 (297)
Q Consensus 175 ~~l~-kd~~IVvyC~-~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~--~~~~~~~~~~G~t~~~gkT~~l~ 250 (297)
..++ ++++||+||+ +|+||..++++|..+|| +|+.|+|||++|+..+++... +.+..+.+++|.| |+|||++|.
T Consensus 82 ~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~T-GsGKT~iL~ 159 (345)
T PRK11784 82 ADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNT-GSGKTELLQ 159 (345)
T ss_pred HhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCC-cccHHHHHH
Confidence 3444 7889999995 89999999999999999 599999999999998776632 3567788999999 599999999
Q ss_pred ccchhcCCC
Q 022409 251 YPFLHISYP 259 (297)
Q Consensus 251 ~l~~~~g~~ 259 (297)
.| .+.|++
T Consensus 160 ~L-~~~~~~ 167 (345)
T PRK11784 160 AL-ANAGAQ 167 (345)
T ss_pred HH-HhcCCe
Confidence 99 665653
No 2
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.92 E-value=6.4e-26 Score=214.37 Aligned_cols=147 Identities=21% Similarity=0.305 Sum_probs=123.8
Q ss_pred CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCc-cccHHHHHHHHhcCCCCCeEEE
Q 022409 107 SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSKVEEKLPKDTDLIV 185 (297)
Q Consensus 107 ~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~-~~~~~f~~~~~~~l~kd~~IVv 185 (297)
+.+|||||+|.||..||||||+|||+++++++..+||+|||.+.+. +.-.|.+.. .+.+++++++....+++.+||+
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~--A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv 79 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFA--AIKLGLALVSPNLAAHVEQWRAFADGPPQPLL 79 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHH--HHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence 4689999999999999999999999999999999999999998644 344666664 4677788887766666667999
Q ss_pred EeC-CCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC--CCCCcccccCcccCcccchhhhcccchhcCC
Q 022409 186 ACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG--PQPLKFAGIGGLSEFLGYTSQLCYPFLHISY 258 (297)
Q Consensus 186 yC~-~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~--~~~~~~~~~~G~t~~~gkT~~l~~l~~~~g~ 258 (297)
||+ +|+||..++++|+.+|| +|+.|+||+++|+..+.+... +.+..+.+++|.| ++|||++++.+ ++.|+
T Consensus 80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~t-g~gKt~Ll~~L-~~~~~ 152 (311)
T TIGR03167 80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMT-GSGKTELLHAL-ANAGA 152 (311)
T ss_pred EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCCCCceeccCCCC-CcCHHHHHHHH-hcCCC
Confidence 995 89999999999999999 699999999999998877642 3566777899987 69999999999 55454
No 3
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.89 E-value=3.1e-23 Score=164.00 Aligned_cols=100 Identities=24% Similarity=0.358 Sum_probs=83.5
Q ss_pred cccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
+.|+++++.++++.++.+|||||++.||+.||||||+|+|+..+.+. ++.+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~----------------------------~~~~~ 53 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREF----------------------------PFWLD 53 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHh----------------------------HHHHH
Confidence 46899999998887788999999999999999999999998764321 11122
Q ss_pred HHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 172 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
++. ..+++++|||||++|.||..++..|.++||+||+.|+||+.+|.+
T Consensus 54 ~~~-~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 54 ENL-DLLKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred hhh-hhcCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 221 236889999999999999999999999999999999999999964
No 4
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.88 E-value=5.7e-23 Score=170.06 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=93.9
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCc-cccHHHHHH
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSK 172 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~-~~~~~f~~~ 172 (297)
|+++|+.++++ ++.+|||||++.||..||||||+|||+.++..+...++++++.+.+.+. +.|...+ ...++++++
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAI--ELGLELVSGKLKRILNE 77 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHH--HHHHHHHhhhHHHHHHH
Confidence 68899998887 6789999999999999999999999998766554444555544321111 2222111 233455555
Q ss_pred HH-hcCCCCCeEEEEeC-CCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC
Q 022409 173 VE-EKLPKDTDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 173 ~~-~~l~kd~~IVvyC~-~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~ 221 (297)
+. ..++++++|||||+ +|.||..+++.|+.+|| +|+.|+||+.+|...
T Consensus 78 ~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~~ 127 (128)
T cd01520 78 AWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRKF 127 (128)
T ss_pred HHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHhh
Confidence 54 36789999999997 79999999999999999 699999999999763
No 5
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.7e-22 Score=163.32 Aligned_cols=114 Identities=29% Similarity=0.398 Sum_probs=101.4
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
.....++.++++++++.++.++||||+|+||..||+|.+||||+...... .+.++++
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~-----------------------~~l~~~e 76 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGA-----------------------GALKNPE 76 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccc-----------------------cccCCHH
Confidence 66788999999999988889999999999999999999999998654432 2457899
Q ss_pred HHHHHHhcCC-CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCc
Q 022409 169 FLSKVEEKLP-KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 169 f~~~~~~~l~-kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
|.+++....+ .|++|||+|++|.||..|...|..+||+||.++.|||.+|.+.+++.
T Consensus 77 F~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~ 134 (136)
T KOG1530|consen 77 FLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK 134 (136)
T ss_pred HHHHhcccCCCCCCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence 9999987665 45699999999999999999999999999999999999999988765
No 6
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.86 E-value=1e-21 Score=154.38 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=85.8
Q ss_pred cccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
+.|+++|+.++++.+ .+|||||++.||..+|||||+|+|+..+.+..
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~-------------------------------- 48 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESEG-------------------------------- 48 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhcccc--------------------------------
Confidence 568999999988765 89999999999999999999999987654321
Q ss_pred HHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCc
Q 022409 172 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
..++++++||+||.+|.||..++..|.+.||+||+.|+||+.+|...++|+
T Consensus 49 ---~~~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 49 ---LPLVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred ---cCCCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 135778899999999999999999999999999999999999999988763
No 7
>PLN02160 thiosulfate sulfurtransferase
Probab=99.86 E-value=1.4e-21 Score=164.05 Aligned_cols=115 Identities=27% Similarity=0.336 Sum_probs=95.1
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCe--EecCCCCCcccccCCCCCccccccccCCccCCCCCcccc
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGS--IWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 166 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGA--inIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~ 166 (297)
..++.++++|+.++++. +.+|||||++.||..|||||| +|+|+..+.... + .+.
T Consensus 12 ~~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~---~--------------------l~~ 67 (136)
T PLN02160 12 EEVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQG---R--------------------VKN 67 (136)
T ss_pred eeeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCccc---c--------------------cCC
Confidence 35788999999988864 468999999999999999999 899975432111 1 123
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
++|...+...++++++||+||++|.||..++..|.+.||++|+.|.||+.+|.+.++|+..
T Consensus 68 ~~~~~~~~~~~~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 68 QEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred HHHHHHHHhccCCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 5666666555678899999999999999999999999999999999999999999999964
No 8
>PRK01415 hypothetical protein; Validated
Probab=99.86 E-value=3.7e-22 Score=182.89 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=107.9
Q ss_pred cccCCCcCCcceEeccCCchhhhhHHhhhHHHHHHHHHhhhCCCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCC
Q 022409 47 YYIAPSFNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKG 126 (297)
Q Consensus 47 ~~~~~~~~~~~v~~qa~~~~~~~~~~~~~a~~~~~w~~~~~~~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpG 126 (297)
.+..++|.+..||++. ++.++......+ .....+.|+++++.++++.++.++||||++.||+.|||||
T Consensus 79 ~~~~~~F~~l~vr~k~-----eiV~~g~~~~~~-------~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~g 146 (247)
T PRK01415 79 YSDVHPFQKLKVRLKK-----EIVAMNVDDLNV-------DLFKGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKS 146 (247)
T ss_pred cccCCCCCccEEEeec-----eEEecCCCCCCc-------cccCccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCC
Confidence 3567999999999999 444443221111 1245688999999999988899999999999999999999
Q ss_pred eEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCC
Q 022409 127 SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR 206 (297)
Q Consensus 127 AinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~ 206 (297)
|+|+|+..+.+. ++++.+.. .++++++|++||++|.||..|+..|.+.||+
T Consensus 147 Ainip~~~f~e~----------------------------~~~~~~~~-~~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~ 197 (247)
T PRK01415 147 AINPNTKTFKQF----------------------------PAWVQQNQ-ELLKGKKIAMVCTGGIRCEKSTSLLKSIGYD 197 (247)
T ss_pred CCCCChHHHhhh----------------------------HHHHhhhh-hhcCCCeEEEECCCChHHHHHHHHHHHcCCC
Confidence 999997655432 22222222 4578899999999999999999999999999
Q ss_pred CEEEccccHHHHHhCCC
Q 022409 207 NLFWVQGGLEAAEEEDL 223 (297)
Q Consensus 207 nV~~L~GG~~aw~~~~l 223 (297)
|||.|+||+.+|.++..
T Consensus 198 ~Vy~L~GGi~~w~~~~~ 214 (247)
T PRK01415 198 EVYHLKGGILQYLEDTQ 214 (247)
T ss_pred cEEEechHHHHHHHhcc
Confidence 99999999999998643
No 9
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.86 E-value=4.1e-22 Score=159.84 Aligned_cols=101 Identities=21% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCcccCHHHHHHHhcCC-CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 89 GKVKVLTPREAGYAVQLS-SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~-~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
...+.|+++++.++++.+ +.+|||||++.||..||||||+|+|+..+.+..
T Consensus 7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~---------------------------- 58 (109)
T cd01533 7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRV---------------------------- 58 (109)
T ss_pred ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHH----------------------------
Confidence 456889999999988654 578999999999999999999999975432211
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCC-EEEccccHHHHHhCC
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRN-LFWVQGGLEAAEEED 222 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~n-V~~L~GG~~aw~~~~ 222 (297)
..+ ..+++++|||||++|.||..++..|+..||+| |+.|+||+.+|...+
T Consensus 59 ---~~l--~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 59 ---GEL--APDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ---Hhc--CCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 111 12467899999999999999999999999998 999999999998753
No 10
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.86 E-value=6.6e-22 Score=158.38 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=90.4
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
.+.+.++++|+.++++.++.++||||++.||..||||||+|+|+..+.+
T Consensus 2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~------------------------------- 50 (108)
T PRK00162 2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA------------------------------- 50 (108)
T ss_pred CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH-------------------------------
Confidence 3678899999999887667899999999999999999999999643221
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
+ + ..++++++|+|||.+|.||..++..|+..||+||+.|+||+.+|.+.++|+++
T Consensus 51 ~---~-~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~ 105 (108)
T PRK00162 51 F---M-RQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105 (108)
T ss_pred H---H-HhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence 1 1 24678889999999999999999999999999999999999999999998864
No 11
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.85 E-value=2.8e-21 Score=157.66 Aligned_cols=114 Identities=32% Similarity=0.428 Sum_probs=91.3
Q ss_pred cCHHHHHHHhcC-CCcEEEEeCChhhhc-ccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 94 LTPREAGYAVQL-SSKTLLDVRPSTERK-KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 94 Is~eel~~~l~~-~~~vlIDVRs~~Ef~-~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
|+++|+.++++. ++.++||||++.||+ .||||||+|+|+.++.... ....|..
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~-------------------------~~~~~~~ 55 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDME-------------------------INPNFLA 55 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccc-------------------------cCHHHHH
Confidence 578999998876 578899999999999 9999999999986543211 1234555
Q ss_pred HHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccCCCCCc
Q 022409 172 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLK 232 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~~~~~~ 232 (297)
.+....+++++||+||++|.||..++..|.+.||+||+.+.|||.+|+..-.-.....+|+
T Consensus 56 ~l~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~~~~~~~~~~~ 116 (117)
T cd01522 56 ELEEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGGVNGWR 116 (117)
T ss_pred HHHhhCCCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCCCCcccccCCCC
Confidence 5554457889999999999999999999999999999999999999988754443334443
No 12
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.85 E-value=3.5e-21 Score=151.84 Aligned_cols=98 Identities=28% Similarity=0.401 Sum_probs=80.5
Q ss_pred cCHHHHHHHhcC-CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHH
Q 022409 94 LTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSK 172 (297)
Q Consensus 94 Is~eel~~~l~~-~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~ 172 (297)
|+++|+.++++. ++.+|||||++.||+.||||||+|+|+..+.++. .+....
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~---------------------------~~~~~~ 53 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDF---------------------------LEIEED 53 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHH---------------------------HHhhHH
Confidence 578899988865 4679999999999999999999999987654221 000122
Q ss_pred HHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 173 VEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 173 ~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
....++++++||+||.+|.||..++..|++.||+ ++.|.||+.+|.
T Consensus 54 ~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 54 ILDQLPDDQEVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred HHhhCCCCCeEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 2345788999999999999999999999999998 999999999995
No 13
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.83 E-value=2.1e-20 Score=148.17 Aligned_cols=102 Identities=32% Similarity=0.384 Sum_probs=82.0
Q ss_pred CHHHHHHHhc-CCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHH
Q 022409 95 TPREAGYAVQ-LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKV 173 (297)
Q Consensus 95 s~eel~~~l~-~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~ 173 (297)
+++++.++++ .++.+|||||++.||..||||||+|+|+..+.+.. .....+|.+.+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-----------------------~~~~~~~~~~~ 58 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-----------------------ALSEEEFEKKY 58 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-----------------------CCCHHHHHHHh
Confidence 5778888887 66789999999999999999999999987654321 01122444433
Q ss_pred Hh-cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 174 EE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 174 ~~-~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
.. .++++++||+||.+|.||..++..|..+||+||+.|+||+.+|.
T Consensus 59 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~ 105 (106)
T cd01519 59 GFPKPSKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWA 105 (106)
T ss_pred cccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHc
Confidence 32 24578899999999999999999999999999999999999995
No 14
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.83 E-value=1.7e-20 Score=153.81 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=88.0
Q ss_pred CCCcccCHHHHHHHhcC-CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 89 GKVKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~-~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
.....|+++|+.++++. ++.+|||||++.||..+|||||+|||+..+.+... .+.+
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~--~~~~--------------------- 61 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAA--ELKS--------------------- 61 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhh--hhhh---------------------
Confidence 45678999999998866 57789999999999999999999999876544321 0000
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCC-CCEEEccccHHHHHhCCCC
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGY-RNLFWVQGGLEAAEEEDLV 224 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy-~nV~~L~GG~~aw~~~~lp 224 (297)
. ......++++++||+||++|.||..++..|+..|| +||+.|+||+.+|..+..+
T Consensus 62 -~-~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 62 -L-QELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred -h-hhcccccCCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 0 00011357889999999999999999999999999 7999999999999987543
No 15
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.82 E-value=1.1e-20 Score=148.01 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=75.3
Q ss_pred cCHHHHHHHhcCC--CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 94 LTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 94 Is~eel~~~l~~~--~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
|+++|+.++++.+ +.+|||||++.||+.||||||+|+|+..+.... .
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~-------------------------------~ 49 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQET-------------------------------D 49 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHH-------------------------------H
Confidence 6788999888654 578999999999999999999999965432211 0
Q ss_pred HHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 172 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
.+ .-.++++||+||.+|.||..++..|..+||+ |+.|+||+.+|.
T Consensus 50 ~~--~~~~~~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~ 94 (95)
T cd01534 50 HF--APVRGARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAAL 94 (95)
T ss_pred Hh--cccCCCeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence 01 1124679999999999999999999999998 999999999996
No 16
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.82 E-value=3e-20 Score=146.13 Aligned_cols=101 Identities=24% Similarity=0.384 Sum_probs=80.7
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhh-cccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHH
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTER-KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSK 172 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef-~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~ 172 (297)
|+++|+.++++.++.+|||||++.|| ..||||||+|+|+..+....+... .+
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~------------------------~~--- 53 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDS------------------------PY--- 53 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccc------------------------cc---
Confidence 57889988887677899999999998 579999999999765443211000 00
Q ss_pred HHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC
Q 022409 173 VEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 173 ~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~ 221 (297)
....++++++|||||.+|.||..+++.|+.+||+||+.|+||+.+|...
T Consensus 54 ~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 54 HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred cccCCCCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 0013578899999999999999999999999999999999999999764
No 17
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.82 E-value=1.7e-20 Score=145.92 Aligned_cols=91 Identities=26% Similarity=0.366 Sum_probs=79.1
Q ss_pred cCHHHHHHHhcC-CCcEEEEeCChhhhcc--cccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHH
Q 022409 94 LTPREAGYAVQL-SSKTLLDVRPSTERKK--AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 170 (297)
Q Consensus 94 Is~eel~~~l~~-~~~vlIDVRs~~Ef~~--ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~ 170 (297)
|+++++.++++. .+.++||||++.||.. ||||||+|+|+..+.+.
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~-------------------------------- 49 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW-------------------------------- 49 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH--------------------------------
Confidence 688899888765 4689999999999999 99999999997543221
Q ss_pred HHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 171 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
...++++++|||||.+|.||..++..|+..||+||+.|+||+.+|.
T Consensus 50 ---~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 50 ---LGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred ---HhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 1246788999999999999999999999999999999999999995
No 18
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.82 E-value=1.9e-20 Score=172.84 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=103.3
Q ss_pred ccccCCCcCCcceEeccCCchhhhhHHhhhHHHHHHHHHhhhCCCCcccCHHHHHHHhcCC------CcEEEEeCChhhh
Q 022409 46 PYYIAPSFNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKVKVLTPREAGYAVQLS------SKTLLDVRPSTER 119 (297)
Q Consensus 46 ~~~~~~~~~~~~v~~qa~~~~~~~~~~~~~a~~~~~w~~~~~~~~~~~Is~eel~~~l~~~------~~vlIDVRs~~Ef 119 (297)
.....++|.+..||... ++..+...+. ....+..+.|+++|+.++++.. +.+|||||++.||
T Consensus 76 ~~~~~~pF~~l~vk~k~-----eiv~~g~~~~-------n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~ 143 (257)
T PRK05320 76 SLSDSQPFRRMLVKLKR-----EIITMKRPAI-------RPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEV 143 (257)
T ss_pred ccccCCCchhccchhhh-----HHhhcCCccc-------CcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHH
Confidence 34556888888888887 3433322211 1223567889999999887542 4789999999999
Q ss_pred cccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHH
Q 022409 120 KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACEL 199 (297)
Q Consensus 120 ~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~ 199 (297)
+.||||||+|||+.++.+. ++++......+ ++++|++||++|.||..|+..
T Consensus 144 ~~Ghi~GAiniPl~~f~~~----------------------------~~~l~~~~~~~-kdk~IvvyC~~G~Rs~~Aa~~ 194 (257)
T PRK05320 144 DVGTFDGALDYRIDKFTEF----------------------------PEALAAHRADL-AGKTVVSFCTGGIRCEKAAIH 194 (257)
T ss_pred ccCccCCCEeCChhHhhhh----------------------------HHHHHhhhhhc-CCCeEEEECCCCHHHHHHHHH
Confidence 9999999999998655432 22333322233 788999999999999999999
Q ss_pred HHHcCCCCEEEccccHHHHHhC
Q 022409 200 LYNAGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 200 L~~~Gy~nV~~L~GG~~aw~~~ 221 (297)
|++.||+|||+|+||+.+|.++
T Consensus 195 L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 195 MQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred HHHcCCcceEEeccCHHHHHHh
Confidence 9999999999999999999985
No 19
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.82 E-value=2e-20 Score=147.87 Aligned_cols=97 Identities=26% Similarity=0.457 Sum_probs=80.6
Q ss_pred ccCHHHHHHHhcCC--CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHH
Q 022409 93 VLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 170 (297)
Q Consensus 93 ~Is~eel~~~l~~~--~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~ 170 (297)
.|+++|+.++++.+ +.++||||++.||..+|||||+|+|+..+.+ ++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~-------------------------------~~ 49 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPE-------------------------------RS 49 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHH-------------------------------HH
Confidence 37889999988764 5789999999999999999999999754332 22
Q ss_pred HHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC
Q 022409 171 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~ 221 (297)
+.+. ..+++++||+||++|.||..++..|.+.||++|+.|+||+.+|.+.
T Consensus 50 ~~~~-~~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 50 KELD-SDNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred HHhc-ccCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 2222 1246889999999999999999999999999999999999999764
No 20
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.82 E-value=9.6e-20 Score=157.35 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=89.0
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChh----hhccc---------ccCCeEecCCCCCcccccCCCCCccccccccCC
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPST----ERKKA---------WIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGG 155 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~----Ef~~g---------hIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~ 155 (297)
.....|+++|+.++++.++.+|||||++. ||..| |||||+|+|.....+-..
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~--------------- 97 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAP--------------- 97 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCC---------------
Confidence 56789999999999987788999999876 56544 999999999643221100
Q ss_pred ccCCCCCccccHHHHHHHHhc--CCCCCeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCc
Q 022409 156 WWSGVPTLSYNKQFLSKVEEK--LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 156 ~w~G~~~~~~~~~f~~~~~~~--l~kd~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
...+.|.+.+.+. .+++++||+||++|. ||..+++.|..+||+||++|+||+.+|...++|+
T Consensus 98 --------~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 98 --------AWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred --------chhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 0112344444332 268899999999987 8999999999999999999999999999999874
No 21
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.82 E-value=6.5e-20 Score=145.22 Aligned_cols=108 Identities=30% Similarity=0.484 Sum_probs=85.3
Q ss_pred CHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHH
Q 022409 95 TPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVE 174 (297)
Q Consensus 95 s~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~ 174 (297)
|++|+.++++.++.+|||||++.||..||||||+|+|+..+.... .......+.++.....
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 61 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDE-------------------PSLSEDKLDEFLKELG 61 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSS-------------------SBCHHHHHHHHHHHHT
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccc-------------------cccccccccccccccc
Confidence 688999998667899999999999999999999999986651110 0001124445555555
Q ss_pred hcCCCCCeEEEEeCCCCcHHHHHHH-----HHHcCCCCEEEccccHHHHHhC
Q 022409 175 EKLPKDTDLIVACQKGLRSLAACEL-----LYNAGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 175 ~~l~kd~~IVvyC~~G~RS~~aa~~-----L~~~Gy~nV~~L~GG~~aw~~~ 221 (297)
..++++++||+||.+|.++..++.. |..+||++|++|+|||.+|.++
T Consensus 62 ~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp HGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred ccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 5678888999999999998888877 9999999999999999999863
No 22
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.81 E-value=5.7e-20 Score=145.60 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=77.7
Q ss_pred cCHHHHHHHhcCC--CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 94 LTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 94 Is~eel~~~l~~~--~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
||++|+.++++.+ +.+|||||++.||..||||||+|+|+..+..... . +........
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~--~----------------~~~~~~~~~--- 59 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEG--E----------------LEQLPTVPR--- 59 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccc--c----------------cccccchHH---
Confidence 6889999988653 6789999999999999999999999765431100 0 000000111
Q ss_pred HHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 172 KVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
+.. .++++||+||.+|.||..+++.|..+||+||+.|+||+.+|.
T Consensus 60 -~~~--~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 60 -LEN--YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred -HHh--hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 111 246799999999999999999999999999999999999995
No 23
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.81 E-value=3.4e-20 Score=152.52 Aligned_cols=98 Identities=22% Similarity=0.324 Sum_probs=79.2
Q ss_pred cccCHHHHHHHhcC------CCcEEEEeCChhhhcccccCCeEecCCC-CCcccccCCCCCccccccccCCccCCCCCcc
Q 022409 92 KVLTPREAGYAVQL------SSKTLLDVRPSTERKKAWIKGSIWIPIF-DIDDTFDAGSLPQKVTNFVMGGWWSGVPTLS 164 (297)
Q Consensus 92 ~~Is~eel~~~l~~------~~~vlIDVRs~~Ef~~ghIpGAinIPl~-~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~ 164 (297)
+.|+++|+.++++. ++.+|||||++.||..||||||+|+|+. .+.+..
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~------------------------- 56 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFF------------------------- 56 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHH-------------------------
Confidence 56999999998865 3688999999999999999999999965 222111
Q ss_pred ccHHHHHHH-HhcCCCCCeEEEEeC-CCCcHHHHHHHHHHc------------CCCCEEEccccHHHHH
Q 022409 165 YNKQFLSKV-EEKLPKDTDLIVACQ-KGLRSLAACELLYNA------------GYRNLFWVQGGLEAAE 219 (297)
Q Consensus 165 ~~~~f~~~~-~~~l~kd~~IVvyC~-~G~RS~~aa~~L~~~------------Gy~nV~~L~GG~~aw~ 219 (297)
.+.. ...++++++|||||. +|.||..++..|+.. ||++||+|+|||.+|.
T Consensus 57 -----~~~~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 57 -----LDKPGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred -----HHhhcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 0000 012578899999997 999999999999985 9999999999999985
No 24
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.81 E-value=3e-19 Score=145.48 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=87.2
Q ss_pred cCHHHHHHHhcCCCcEEEEeCCh-------hhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCcccc
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPS-------TERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 166 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~-------~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~ 166 (297)
|+++++.++++.++.+|||||++ .||+.||||||+|+|+.++..+.. .|.| .+...
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~---------------~~~~--~~~~~ 64 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS---------------PGPH--MLPSP 64 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC---------------CCCC--CCCCH
Confidence 78999999887777899999999 999999999999999877654310 0111 11122
Q ss_pred HHHHHHHHh-cCCCCCeEEEEeCC-CCcHHHHHHHHHHcCCCCEEEccccHHHHHhCC
Q 022409 167 KQFLSKVEE-KLPKDTDLIVACQK-GLRSLAACELLYNAGYRNLFWVQGGLEAAEEED 222 (297)
Q Consensus 167 ~~f~~~~~~-~l~kd~~IVvyC~~-G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~ 222 (297)
.+|.+.+.. .++++++|||||++ |.++..+++.|+.+||+||+.|+||+.+|...+
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 344443332 36788999999998 589999999999999999999999999998753
No 25
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.80 E-value=1.8e-19 Score=145.02 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=83.9
Q ss_pred CcccCHHHHHHHhcC--CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 91 VKVLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 91 ~~~Is~eel~~~l~~--~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
...++++|+.++++. ++.+|||||++.||..||||||+|+|...+...
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~------------------------------ 56 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN------------------------------ 56 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH------------------------------
Confidence 467899999998865 357999999999999999999999996543311
Q ss_pred HHHHHHhcCCCCCeEEEEeCCC--CcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCc
Q 022409 169 FLSKVEEKLPKDTDLIVACQKG--LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G--~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
....++++++||+||.+| .+|..++..|+++||+ |+.|+||+.+|...++|+
T Consensus 57 ----~~~~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 57 ----ATAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred ----hhhcCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 112567889999999977 4899999999999995 999999999999988763
No 26
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.80 E-value=7.7e-20 Score=141.80 Aligned_cols=89 Identities=34% Similarity=0.543 Sum_probs=76.0
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHH
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKV 173 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~ 173 (297)
++++|+.+++ .++.++||||++.||..||||||+|+|+..+... +
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----------------------------------~ 45 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----------------------------------L 45 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----------------------------------H
Confidence 4688888887 4567899999999999999999999996433211 1
Q ss_pred HhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 174 EEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 174 ~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
..++++++||+||.+|.++..++..|++.|| +|++|+||+.+|.
T Consensus 46 -~~~~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 46 -NELPKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred -HhcCCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 2457788999999999999999999999999 8999999999995
No 27
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.80 E-value=1.6e-19 Score=145.88 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=83.4
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhhcc-----------cccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTERKK-----------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef~~-----------ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
++++++.++++.++.+|||||++.||.. ||||||+|+|+..+.... +
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--~-------------------- 58 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--G-------------------- 58 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--C--------------------
Confidence 5788898888766789999999999987 999999999986543210 1
Q ss_pred ccccHHHHHHHHhc--CCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 163 LSYNKQFLSKVEEK--LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 163 ~~~~~~f~~~~~~~--l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
..+.++.+++.... ++++++||+||++|.||..+++.|+.+||+||+.|+||+.+|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~ 117 (118)
T cd01449 59 TFKSPEELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG 117 (118)
T ss_pred CcCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence 11234444444333 5688899999999999999999999999999999999999996
No 28
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.79 E-value=2.2e-19 Score=138.00 Aligned_cols=97 Identities=28% Similarity=0.406 Sum_probs=76.9
Q ss_pred CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHh-cCCCCCeEE
Q 022409 106 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE-KLPKDTDLI 184 (297)
Q Consensus 106 ~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~-~l~kd~~IV 184 (297)
++.+|||||++.||..+|||||+|+|+..+..... ....+++...+.. ..+++++||
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~iv 60 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRG----------------------ELDILEFEELLKRLGLDKDKPVV 60 (100)
T ss_pred CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCC----------------------CcCHHHHHHHHHHcCCCCCCeEE
Confidence 56899999999999999999999999876554321 0011122222222 356888999
Q ss_pred EEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCC
Q 022409 185 VACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLV 224 (297)
Q Consensus 185 vyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp 224 (297)
+||.+|.|+..++..|.++||++|++|+||+.+|.+.+.|
T Consensus 61 ~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 61 VYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred EEeCCCcHHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 9999999999999999999999999999999999988654
No 29
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.78 E-value=4.9e-19 Score=138.69 Aligned_cols=87 Identities=24% Similarity=0.260 Sum_probs=71.0
Q ss_pred CCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEE
Q 022409 105 LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLI 184 (297)
Q Consensus 105 ~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IV 184 (297)
.++.+|||||++.||+.||||||+|+|...+... .+.++.+ ...+++++||
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~----------------------------~~~~~~~-~~~~~~~~iv 60 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR----------------------------SQELQAL-EAPGRATRYV 60 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC----------------------------HHHHHHh-hcCCCCCCEE
Confidence 3568999999999999999999999996543211 1222222 2357888999
Q ss_pred EEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 185 VACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 185 vyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
+||.+|.||..++..|+..||+||+.|+||+.+|.+
T Consensus 61 v~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 61 LTCDGSLLARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEeCChHHHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999999999999963
No 30
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.7e-18 Score=136.15 Aligned_cols=90 Identities=32% Similarity=0.506 Sum_probs=78.8
Q ss_pred cCCCcEEEEeCChhhhcccccCC-eEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCe
Q 022409 104 QLSSKTLLDVRPSTERKKAWIKG-SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTD 182 (297)
Q Consensus 104 ~~~~~vlIDVRs~~Ef~~ghIpG-AinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~ 182 (297)
..++.+|||||++.||+.+|||| ++|+|+.++.+..... ..+++++
T Consensus 17 ~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~---------------------------------~~~~~~~ 63 (110)
T COG0607 17 AGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLL---------------------------------ELPDDDP 63 (110)
T ss_pred ccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhccc---------------------------------ccCCCCe
Confidence 45678999999999999999999 9999988877653100 0468899
Q ss_pred EEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCcc
Q 022409 183 LIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVRE 226 (297)
Q Consensus 183 IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~ 226 (297)
+||||++|.||..++..|+++||++++.+.||+.+|...+++..
T Consensus 64 ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~ 107 (110)
T COG0607 64 IVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLV 107 (110)
T ss_pred EEEEeCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcc
Confidence 99999999999999999999999988899999999999988775
No 31
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.76 E-value=1.8e-18 Score=139.67 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=79.0
Q ss_pred CcccCHHHHHHHhcC--CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 91 VKVLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 91 ~~~Is~eel~~~l~~--~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
++.|+++|+.+++.. ++.++||||++ ||..||||||+|+|+..+.... .+
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~---------------------------~~ 52 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL---------------------------NQ 52 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH---------------------------HH
Confidence 467899999998865 35789999999 9999999999999976543221 12
Q ss_pred HHHHHHhcCCCCCeEEEEeC-CCCcHHHHHHHHHH--------cCCCCEEEccccHHHHHhC
Q 022409 169 FLSKVEEKLPKDTDLIVACQ-KGLRSLAACELLYN--------AGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~-~G~RS~~aa~~L~~--------~Gy~nV~~L~GG~~aw~~~ 221 (297)
+.+.. ..+++++||+||. +|.|+..++..|.+ .||+||++|+||+.+|.+.
T Consensus 53 ~~~~~--~~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 53 LVQLL--SGSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred HHHHH--hcCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 21111 1256789999998 77899999988754 4999999999999999863
No 32
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.76 E-value=1.8e-18 Score=163.93 Aligned_cols=132 Identities=14% Similarity=0.246 Sum_probs=99.7
Q ss_pred CCCcCCcceEeccCCchhhhhHHhhhHHHHHHHHHhhhCCCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEe
Q 022409 50 APSFNLGGIRMQAGGEEYELKQMRDMAAAKKRWDALIRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIW 129 (297)
Q Consensus 50 ~~~~~~~~v~~qa~~~~~~~~~~~~~a~~~~~w~~~~~~~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAin 129 (297)
.++|++..+++... +..+.-.. ... ........++++|+.++++.++.+|||||++.||+.||||||+|
T Consensus 81 ~~~f~~l~~~~~~e-----Lv~~G~d~-~v~-----~~~~~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ 149 (314)
T PRK00142 81 GHAFPRLSVKVRKE-----IVALGLDD-DID-----PLENVGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIE 149 (314)
T ss_pred CCCcccceeeeeee-----eeecCCCC-CCC-----ccccCCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEe
Confidence 47787887888774 22111100 000 00145678999999999887889999999999999999999999
Q ss_pred cCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 130 IPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 130 IPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
+|+..+.+. ++++.+.. ...++++||+||++|.||..++.+|.+.||+||+
T Consensus 150 ip~~~~~~~----------------------------~~~l~~~~-~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~ 200 (314)
T PRK00142 150 PDIETFREF----------------------------PPWVEENL-DPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVY 200 (314)
T ss_pred CCHHHhhhh----------------------------HHHHHHhc-CCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEE
Confidence 998665432 12221111 2357889999999999999999999999999999
Q ss_pred EccccHHHHHhC
Q 022409 210 WVQGGLEAAEEE 221 (297)
Q Consensus 210 ~L~GG~~aw~~~ 221 (297)
.|+||+.+|.++
T Consensus 201 ~L~GGi~~w~~~ 212 (314)
T PRK00142 201 QLEGGIITYGED 212 (314)
T ss_pred EecchHHHHHHh
Confidence 999999999884
No 33
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.75 E-value=1.9e-18 Score=134.92 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=68.4
Q ss_pred hcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcC-CCCC
Q 022409 103 VQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKL-PKDT 181 (297)
Q Consensus 103 l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l-~kd~ 181 (297)
++.++.+|||||++.||..+|||||+|+|+..+... .. ..+ ++++
T Consensus 6 ~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~---------------------------------~~-~~~~~~~~ 51 (92)
T cd01532 6 LAREEIALIDVREEDPFAQSHPLWAANLPLSRLELD---------------------------------AW-VRIPRRDT 51 (92)
T ss_pred hcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh---------------------------------hH-hhCCCCCC
Confidence 445678999999999999999999999996532211 00 122 3578
Q ss_pred eEEEEeCCCCc--HHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 182 DLIVACQKGLR--SLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 182 ~IVvyC~~G~R--S~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
+|||||.+|.| |..+++.|+..||+||+.|+||+.+|.+
T Consensus 52 ~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 52 PIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 99999999987 6899999999999999999999999963
No 34
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.75 E-value=1.7e-18 Score=131.42 Aligned_cols=87 Identities=32% Similarity=0.467 Sum_probs=72.9
Q ss_pred HHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCC
Q 022409 100 GYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPK 179 (297)
Q Consensus 100 ~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~k 179 (297)
..+++.++..+||+|++.||+.+|||||+|+|+..+.... .....++
T Consensus 3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~---------------------------------~~~~~~~ 49 (89)
T cd00158 3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA---------------------------------ALLELDK 49 (89)
T ss_pred HHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH---------------------------------HhhccCC
Confidence 3444566889999999999999999999999976533220 0124578
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
+++||+||.+|.++..++..|+++||++|+.|+||+.+|.
T Consensus 50 ~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 50 DKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 8999999999999999999999999999999999999984
No 35
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.74 E-value=1.3e-18 Score=161.26 Aligned_cols=135 Identities=15% Similarity=0.248 Sum_probs=112.3
Q ss_pred ccccCCCcCCcceEeccCCchhhhhHHhhhH-HHHHHHHHhhhCCCCcccCHHHHHHHhcCCCcEEEEeCChhhhccccc
Q 022409 46 PYYIAPSFNLGGIRMQAGGEEYELKQMRDMA-AAKKRWDALIRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWI 124 (297)
Q Consensus 46 ~~~~~~~~~~~~v~~qa~~~~~~~~~~~~~a-~~~~~w~~~~~~~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghI 124 (297)
.....++|++..||+++ ++.++.-.. ..+ ....-..|+|++..+++..++.++||+|+..||+.||+
T Consensus 78 s~~~~~pF~r~kVk~kk-----EIV~lg~~ddv~p-------~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F 145 (308)
T COG1054 78 SEADEKPFWRLKVKLKK-----EIVALGVEDDVDP-------LENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHF 145 (308)
T ss_pred ccccCCCcceEEEeehh-----hheecCCCCCcCc-------cccccCccCHHHHHHHhcCCCeEEEEcCcceeEeeeee
Confidence 44556899999999999 555544332 111 12446789999999999999999999999999999999
Q ss_pred CCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcC
Q 022409 125 KGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAG 204 (297)
Q Consensus 125 pGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~G 204 (297)
.|||+.+..++.+. |+++++..+.+ ++++|++||+||.|+.++..+|...|
T Consensus 146 ~gAv~p~~~tFref----------------------------P~~v~~~~~~~-~~KkVvmyCTGGIRCEKas~~m~~~G 196 (308)
T COG1054 146 EGAVEPDIETFREF----------------------------PAWVEENLDLL-KDKKVVMYCTGGIRCEKASAWMKENG 196 (308)
T ss_pred cCccCCChhhhhhh----------------------------HHHHHHHHHhc-cCCcEEEEcCCceeehhhHHHHHHhc
Confidence 99999998876654 67777766555 56799999999999999999999999
Q ss_pred CCCEEEccccHHHHHhC
Q 022409 205 YRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 205 y~nV~~L~GG~~aw~~~ 221 (297)
|++||+|+||+-.|.++
T Consensus 197 F~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 197 FKEVYHLEGGILKYLED 213 (308)
T ss_pred chhhhcccchHHHHhhh
Confidence 99999999999999886
No 36
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=4.5e-18 Score=164.73 Aligned_cols=103 Identities=28% Similarity=0.445 Sum_probs=87.8
Q ss_pred CcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHH
Q 022409 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 170 (297)
Q Consensus 91 ~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~ 170 (297)
++.|+++|+.++++. +.+|||||++.||..||||||+|+|+..+.+.
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------- 48 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELR-------------------------------- 48 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHH--------------------------------
Confidence 567999999998864 58999999999999999999999996533221
Q ss_pred HHHHh-cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccCC
Q 022409 171 SKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGP 228 (297)
Q Consensus 171 ~~~~~-~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~~ 228 (297)
+.. ..+++++||+||++|.||..+++.|+++||+||++|+||+.+|.+.++|++..
T Consensus 49 --~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 105 (376)
T PRK08762 49 --IETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP 105 (376)
T ss_pred --HhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence 111 12678899999999999999999999999999999999999999999988653
No 37
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.74 E-value=6.6e-18 Score=136.48 Aligned_cols=99 Identities=23% Similarity=0.277 Sum_probs=75.1
Q ss_pred cccCHHHHHHHhcCC------CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccc
Q 022409 92 KVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY 165 (297)
Q Consensus 92 ~~Is~eel~~~l~~~------~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~ 165 (297)
+.|+++|+.++++.+ +.+|||||++ ||..||||||+|+|+..+.+..
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-------------------------- 54 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-------------------------- 54 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH--------------------------
Confidence 578999999998764 5789999999 9999999999999986544321
Q ss_pred cHHHHHHHHhcCCCCCeEEEEeCC-CCcHHHHHHHHHH----cCC--CCEEEccccHHHHHh
Q 022409 166 NKQFLSKVEEKLPKDTDLIVACQK-GLRSLAACELLYN----AGY--RNLFWVQGGLEAAEE 220 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC~~-G~RS~~aa~~L~~----~Gy--~nV~~L~GG~~aw~~ 220 (297)
++.++.+. ..+.++||+||.+ |.||..++..|.+ .|| .+++.|+||+.+|.+
T Consensus 55 -~~~~~~~~--~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 55 -PQVYALFS--LAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred -HHHHHHhh--hcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 12222211 1355789999995 6899888876554 475 689999999999963
No 38
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.73 E-value=4.1e-18 Score=144.57 Aligned_cols=86 Identities=24% Similarity=0.359 Sum_probs=74.5
Q ss_pred CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEEEE
Q 022409 107 SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLIVA 186 (297)
Q Consensus 107 ~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IVvy 186 (297)
+.+|||||++.||..||||||+|+|...+. +.+ ..++++.+||||
T Consensus 11 ~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~----------------------------------~~l-~~l~~~~~vVv~ 55 (145)
T cd01535 11 QTAVVDVTASANYVKRHIPGAWWVLRAQLA----------------------------------QAL-EKLPAAERYVLT 55 (145)
T ss_pred CeEEEECCCHHHHHcCCCCCceeCCHHHHH----------------------------------HHH-HhcCCCCCEEEE
Confidence 579999999999999999999999843222 222 246678899999
Q ss_pred eCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 187 CQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 187 C~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
|.+|.+|..++..|+..||++|++|+||+.+|...++|++.
T Consensus 56 c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~ 96 (145)
T cd01535 56 CGSSLLARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVES 96 (145)
T ss_pred eCCChHHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999864
No 39
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.72 E-value=4.1e-17 Score=152.00 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=91.2
Q ss_pred cccCHHHHHHHhcCCCcEEEEeCC----------hhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCC
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVRP----------STERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 161 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVRs----------~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~ 161 (297)
..++++++.++++.++.+|||||+ +.||..||||||+|+|+..+.... ...+
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~------------------~~~~ 66 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHT------------------SPLP 66 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCC------------------CCCC
Confidence 469999999999888899999997 789999999999999975433211 0111
Q ss_pred Ccccc-HHHHHHHHhc-CCCCCeEEEEeCCCCc-HHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 162 TLSYN-KQFLSKVEEK-LPKDTDLIVACQKGLR-SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 162 ~~~~~-~~f~~~~~~~-l~kd~~IVvyC~~G~R-S~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
.+... .+|.+.+.+. ++++++||+||.+|.+ +..+++.|+.+||+||+.|+||+.+|.+.++|++.
T Consensus 67 ~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 135 (281)
T PRK11493 67 HMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE 135 (281)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence 22222 3444444432 6789999999998774 66788999999999999999999999999998853
No 40
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.71 E-value=4.3e-17 Score=137.17 Aligned_cols=108 Identities=17% Similarity=0.164 Sum_probs=82.4
Q ss_pred cCHHHHHHHhc----CCCcEEEEeCCh--------hhhcc------------cccCCeEecCCCCCcccccCCCCCcccc
Q 022409 94 LTPREAGYAVQ----LSSKTLLDVRPS--------TERKK------------AWIKGSIWIPIFDIDDTFDAGSLPQKVT 149 (297)
Q Consensus 94 Is~eel~~~l~----~~~~vlIDVRs~--------~Ef~~------------ghIpGAinIPl~~~~e~~~~gtl~k~~~ 149 (297)
|+++++.+.++ .++.+|||+|+. .||.. ||||||+|+|+..+.... ++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~--~~------ 72 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEA--GF------ 72 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcC--CC------
Confidence 57889998887 457899999987 89988 999999999975432110 00
Q ss_pred ccccCCccCCCCCcccc-HHHHHHHHh-cCCCCCeEEEEeCC---CCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 150 NFVMGGWWSGVPTLSYN-KQFLSKVEE-KLPKDTDLIVACQK---GLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 150 ~~~~~~~w~G~~~~~~~-~~f~~~~~~-~l~kd~~IVvyC~~---G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
...+.+. .+|.+.+.+ .++++++||+||.+ |.++..+++.|+.+|++||++|+||+.+|.
T Consensus 73 ----------~~~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 73 ----------EESMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred ----------CCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 1112222 345444443 37788999999975 789999999999999999999999999996
No 41
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.70 E-value=2.1e-17 Score=132.25 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=66.5
Q ss_pred CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHh-cCCCCCeEE
Q 022409 106 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE-KLPKDTDLI 184 (297)
Q Consensus 106 ~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~-~l~kd~~IV 184 (297)
....+||||++.||..||||||+|+|+.++... +.. ..+++++||
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~----------------------------------l~~~~~~~~~~vv 62 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEH----------------------------------IATAVPDKNDTVK 62 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHH----------------------------------HHHhCCCCCCeEE
Confidence 356899999999999999999999997543322 111 134677999
Q ss_pred EEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 185 VACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 185 vyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
|||++|.||..++..|+++||+||+.+ ||+.+|.-
T Consensus 63 lyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 63 LYCNAGRQSGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred EEeCCCHHHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 999999999999999999999999885 99999974
No 42
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.68 E-value=8e-17 Score=156.95 Aligned_cols=102 Identities=29% Similarity=0.412 Sum_probs=86.5
Q ss_pred CCCcccCHHHHHHHhcCC-CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 89 GKVKVLTPREAGYAVQLS-SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~-~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
...+.|+++|+.++++.+ +.+|||||++.||+.+|||||+|+|+..+....
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~---------------------------- 335 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE---------------------------- 335 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------
Confidence 456789999999988654 578999999999999999999999976543210
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCC
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDL 223 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~l 223 (297)
.+ ..++++++||+||++|.||..++..|++.||+||+.|+||+.+|.+...
T Consensus 336 ----~~-~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 336 ----AL-AKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred ----HH-hhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 01 2467889999999999999999999999999999999999999998744
No 43
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.68 E-value=2e-16 Score=150.28 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=91.5
Q ss_pred cccCHHHHHHHhcCCCcEEEEeC--------C-hhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVR--------P-STERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVR--------s-~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
..|++++|.++++.++.+||||| + ..||..||||||+|+|+..+.+.. .....
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~------------------~~~~~ 83 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT------------------TDLPH 83 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC------------------CCcCC
Confidence 57999999999987788999996 3 378999999999999976544321 01122
Q ss_pred c-cccHHHHHHHHhc-CCCCCeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 163 L-SYNKQFLSKVEEK-LPKDTDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 163 ~-~~~~~f~~~~~~~-l~kd~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
+ ....+|.+.+.+. +.++++|||||.+|. .+..+++.|+.+||+||+.|+||+.+|.++++|++.
T Consensus 84 ~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~ 151 (320)
T PLN02723 84 MLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES 151 (320)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence 2 2334555555532 568889999998776 566888999999999999999999999999999864
No 44
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.68 E-value=4.3e-17 Score=131.17 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=65.8
Q ss_pred CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHh-cCCCCCeEE
Q 022409 106 SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEE-KLPKDTDLI 184 (297)
Q Consensus 106 ~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~-~l~kd~~IV 184 (297)
.+.+|||||++.||..+|||||+|+|+.++... +.+ ..+++++||
T Consensus 19 ~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~----------------------------------l~~l~~~~~~~IV 64 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQGAINIPLKEVKER----------------------------------IATAVPDKNDTVK 64 (104)
T ss_pred CCCEEEECCCHHHHhcCCCCccEECCHHHHHHH----------------------------------HHhcCCCCCCeEE
Confidence 355899999999999999999999996533211 111 124567899
Q ss_pred EEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 185 VACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 185 vyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
+||.+|.||..++..|.+.||++|+. .||+.+|.-
T Consensus 65 lyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 65 LYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred EEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 99999999999999999999999977 699999964
No 45
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.67 E-value=3.2e-16 Score=160.25 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=92.7
Q ss_pred CcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccc-cHHH
Q 022409 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSY-NKQF 169 (297)
Q Consensus 91 ~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~-~~~f 169 (297)
-..|+++|+.++++.++.+|||||++.||..||||||+|+|+..+.... ...+.+.+ ..+|
T Consensus 8 ~~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~------------------~~~~~~lp~~~~l 69 (610)
T PRK09629 8 SLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK------------------PPAPGLLPDTADL 69 (610)
T ss_pred CceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC------------------CCCCCCCCCHHHH
Confidence 3569999999999888899999999999999999999999975421110 00111212 2344
Q ss_pred HHHHHh-cCCCCCeEEEEeCCC-CcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 170 LSKVEE-KLPKDTDLIVACQKG-LRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 170 ~~~~~~-~l~kd~~IVvyC~~G-~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
.+.+.+ .++++++|||||++| .++..+++.|+.+||++|+.|+||+.+|..+++|++.
T Consensus 70 ~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~ 129 (610)
T PRK09629 70 EQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLST 129 (610)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcccc
Confidence 444442 257899999999966 5888999999999999999999999999999998853
No 46
>PRK07411 hypothetical protein; Validated
Probab=99.67 E-value=1e-16 Score=156.09 Aligned_cols=106 Identities=30% Similarity=0.345 Sum_probs=86.7
Q ss_pred CCCcccCHHHHHHHhcCC--CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCcccc
Q 022409 89 GKVKVLTPREAGYAVQLS--SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 166 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~--~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~ 166 (297)
...+.|+++|+.++++.+ +.+|||||++.||+.||||||+|||+.++.+..
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~--------------------------- 331 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGP--------------------------- 331 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhccc---------------------------
Confidence 567889999999988654 578999999999999999999999987654321
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCc
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
...++. .++++++||+||++|.||..++..|+++||+ ++.|.||+.+|.++..|.
T Consensus 332 --~~~~l~-~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~-~~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 332 --GVEKVK-ELLNGHRLIAHCKMGGRSAKALGILKEAGIE-GTNVKGGITAWSREVDPS 386 (390)
T ss_pred --chHHHh-hcCCCCeEEEECCCCHHHHHHHHHHHHcCCC-eEEecchHHHHHHhcCCC
Confidence 011222 3567889999999999999999999999997 568999999999875543
No 47
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.66 E-value=2.4e-16 Score=149.68 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=87.9
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhh-----------cccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTER-----------KKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef-----------~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
++.+++...++.++.+|||+|++.|| ..||||||+|+|+..+.+.. ++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--~~------------------- 250 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--QT------------------- 250 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--CC-------------------
Confidence 68899988887677889999999998 46999999999975433210 11
Q ss_pred ccccHHHHHHHHh-cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC-CCCcc
Q 022409 163 LSYNKQFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVRE 226 (297)
Q Consensus 163 ~~~~~~f~~~~~~-~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~-~lp~~ 226 (297)
+....++.+.+.+ .++++++||+||++|.||..++..|+.+||+||++|+||+.+|... ++|++
T Consensus 251 ~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~ 316 (320)
T PLN02723 251 LLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVA 316 (320)
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCcc
Confidence 1122344444443 3788999999999999999999999999999999999999999875 56664
No 48
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.66 E-value=2.7e-16 Score=146.50 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=85.4
Q ss_pred ccCHHHHHHHhcCCCcEEEEeCChhhhc-----------ccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCC
Q 022409 93 VLTPREAGYAVQLSSKTLLDVRPSTERK-----------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 161 (297)
Q Consensus 93 ~Is~eel~~~l~~~~~vlIDVRs~~Ef~-----------~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~ 161 (297)
.++.+++...++.++.+|||+|++.||. .||||||+|+|+.++.+. ++
T Consensus 154 ~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~---~~------------------ 212 (281)
T PRK11493 154 VVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---GE------------------ 212 (281)
T ss_pred eecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC---CC------------------
Confidence 3455666656655678999999999995 699999999997664321 11
Q ss_pred CccccHHHHHHHHh-cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh-CCCCcc
Q 022409 162 TLSYNKQFLSKVEE-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE-EDLVRE 226 (297)
Q Consensus 162 ~~~~~~~f~~~~~~-~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~-~~lp~~ 226 (297)
+....++...+.. .++++++||+||++|.||..++..|+.+||+||++|+||+.+|.. .++|++
T Consensus 213 -~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~ 278 (281)
T PRK11493 213 -LKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVE 278 (281)
T ss_pred -cCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcC
Confidence 1112233233332 367889999999999999999999999999999999999999998 688876
No 49
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.61 E-value=1.2e-15 Score=146.95 Aligned_cols=97 Identities=27% Similarity=0.386 Sum_probs=80.6
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
+....++++++.+. .++.+|||||++.||+.+|||||+|+|+..+..... +
T Consensus 258 ~~~~~i~~~~~~~~--~~~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~------------------~--------- 308 (355)
T PRK05597 258 GFGEVLDVPRVSAL--PDGVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN------------------P--------- 308 (355)
T ss_pred CcccccCHHHHHhc--cCCCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc------------------c---------
Confidence 44567889988854 246799999999999999999999999865443210 0
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
..++++++||+||++|.||..+++.|+..||+||+.|+||+.+|.+
T Consensus 309 ------~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 309 ------PSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred ------ccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 1346788999999999999999999999999999999999999975
No 50
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.60 E-value=3.3e-15 Score=152.83 Aligned_cols=113 Identities=18% Similarity=0.123 Sum_probs=88.5
Q ss_pred cccCHHHHHHHhcCCCcEEEEeCChhhhc--------ccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCc
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVRPSTERK--------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL 163 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVRs~~Ef~--------~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~ 163 (297)
..++.+++.+.++.++.+|||+|++.||. .||||||+|+|+..+-+.. ++
T Consensus 147 ~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~--~~-------------------- 204 (610)
T PRK09629 147 PTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKA--RN-------------------- 204 (610)
T ss_pred ccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCC--CC--------------------
Confidence 35788999988877788999999999995 6999999999975432110 10
Q ss_pred cccHHHHHHHHh--cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC-CCCcc
Q 022409 164 SYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVRE 226 (297)
Q Consensus 164 ~~~~~f~~~~~~--~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~-~lp~~ 226 (297)
.+.++-++++.+ .++++++||+||++|.||..++..|+.+||+||++|+|||.+|... ++|++
T Consensus 205 lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~ 270 (610)
T PRK09629 205 LRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVE 270 (610)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccc
Confidence 122333333332 3678999999999999999999999999999999999999999875 67775
No 51
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.59 E-value=5.2e-15 Score=122.53 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=78.7
Q ss_pred ccCHHHHHHHhcC--CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHH
Q 022409 93 VLTPREAGYAVQL--SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFL 170 (297)
Q Consensus 93 ~Is~eel~~~l~~--~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~ 170 (297)
.|+++|+.++++. ++.+|||||++.||..+|||||+|+|+..+..+.... +. .....+...++..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~ 67 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQG------------GK-ILLQQLLSCPEDR 67 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcc------------cc-hhhhhhcCCHHHH
Confidence 3789999999865 4789999999999999999999999987533211000 00 0000011122333
Q ss_pred HHHHhcCCCCCeEEEEeCCCCc---------HHHHHHHHHH--cCCCCEEEccccHHHHHhC
Q 022409 171 SKVEEKLPKDTDLIVACQKGLR---------SLAACELLYN--AGYRNLFWVQGGLEAAEEE 221 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~R---------S~~aa~~L~~--~Gy~nV~~L~GG~~aw~~~ 221 (297)
..+... ++++|||||.++.+ +..++..|.. .|+.+|+.|+||+.+|...
T Consensus 68 ~~l~~~--~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 68 DRLRRG--ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred HHHhcC--CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 333322 57799999997765 7777788887 4777899999999999764
No 52
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.58 E-value=1.7e-15 Score=146.72 Aligned_cols=95 Identities=26% Similarity=0.303 Sum_probs=77.4
Q ss_pred cccCHHHHHHHhcCCCcEEEEeCChhhhcccccC---CeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIK---GSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIp---GAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
..++++|+.++++.++.+|||||++.||+.+||| ||+|||+..+.+.. +
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~----------------------------~ 322 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA----------------------------D 322 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch----------------------------h
Confidence 3689999999987777899999999999999998 69999987664321 1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCC-EEEccccHH
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRN-LFWVQGGLE 216 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~n-V~~L~GG~~ 216 (297)
+.+.+. .++++ +|||||++|.||..++..|++.||++ |+.|+||+.
T Consensus 323 ~~~~l~-~~~~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 323 ILHALS-PIDGD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred hhhhcc-ccCCC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 111111 34455 99999999999999999999999986 999999975
No 53
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.2e-14 Score=135.76 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=92.9
Q ss_pred CcccCHHHHHHHhcCCCcEEEEeCChhhhcc----------cccCCeEecCCCCCcccccCCCCCccccccccCCccCCC
Q 022409 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKK----------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGV 160 (297)
Q Consensus 91 ~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~----------ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~ 160 (297)
...++.++....++....+|||+|++.||.. ||||||+|+|+..+-+. |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~---~------------------ 213 (285)
T COG2897 155 KAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD---G------------------ 213 (285)
T ss_pred cccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC---C------------------
Confidence 3456667777777777888999999999998 99999999998776551 1
Q ss_pred CCccccHHHHHHHHh--cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHhC-CCCcc
Q 022409 161 PTLSYNKQFLSKVEE--KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEEE-DLVRE 226 (297)
Q Consensus 161 ~~~~~~~~f~~~~~~--~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~-~lp~~ 226 (297)
.+.+.++.++.+.+ .++.+++||+||++|.||......|+.+|+.++..|+|++..|-+. +.|++
T Consensus 214 -~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~ 281 (285)
T COG2897 214 -GLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVE 281 (285)
T ss_pred -CccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccc
Confidence 12355666666663 4889999999999999999999999999999999999999999885 45665
No 54
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.7e-13 Score=126.86 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=94.7
Q ss_pred CCcccCHHHHHHHhcCC-----CcEEEEeCCh--hhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 90 KVKVLTPREAGYAVQLS-----SKTLLDVRPS--TERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 90 ~~~~Is~eel~~~l~~~-----~~vlIDVRs~--~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
....|+++++.+.++.+ +..+++++.. .+|..+|||||+++++..+..... +.+.
T Consensus 9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~------------------~~~~ 70 (285)
T COG2897 9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPV------------------PLPH 70 (285)
T ss_pred cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCC------------------CCCC
Confidence 45679999999988754 5666666665 899999999999999876554421 1345
Q ss_pred ccccHHHHHHHHhc--CCCCCeEEEEeC-CCCcHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 163 LSYNKQFLSKVEEK--LPKDTDLIVACQ-KGLRSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 163 ~~~~~~f~~~~~~~--l~kd~~IVvyC~-~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
+.+.++.+.++... +.+|.+||+|.. ++.-+..+++.|+-+|++||++|+||+.+|..+++|++.
T Consensus 71 ~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~ 138 (285)
T COG2897 71 MLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET 138 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence 55555555444434 778899999997 555899999999999999999999999999999999974
No 55
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.30 E-value=2.8e-12 Score=128.26 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=62.6
Q ss_pred CCcEEEEeCChhhhcccccCC----eEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCC
Q 022409 106 SSKTLLDVRPSTERKKAWIKG----SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDT 181 (297)
Q Consensus 106 ~~~vlIDVRs~~Ef~~ghIpG----AinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~ 181 (297)
++.++||||++.||+.+|||| |+|+|+..+... + ..+++++
T Consensus 406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----------------------------------~-~~l~~~~ 450 (482)
T PRK01269 406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----------------------------------F-GDLDQSK 450 (482)
T ss_pred CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----------------------------------H-hhcCCCC
Confidence 478999999999999999999 999997554321 1 2467888
Q ss_pred eEEEEeCCCCcHHHHHHHHHHcCCCCEEEccc
Q 022409 182 DLIVACQKGLRSLAACELLYNAGYRNLFWVQG 213 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~G 213 (297)
+||+||++|.||..+|..|+++||+||+.+.+
T Consensus 451 ~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 451 TYLLYCDRGVMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999999999999988753
No 56
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1.3e-11 Score=116.36 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=80.3
Q ss_pred CCCcccCHHHHHHHhcCC------CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 89 GKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~------~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
..++.|+++++..+++.. ..+|||+|-|.||..|||+||+||+-...-.... +++.
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f----~~~~-------------- 214 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFF----LLKD-------------- 214 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhh----cccc--------------
Confidence 678999999999998641 4679999999999999999999999543221110 0000
Q ss_pred ccccHHHHHHHHhcCCCCCeEEEEeC-CCCcHHHHHHHHHH------------cCCCCEEEccccHHHHHhCCCCc
Q 022409 163 LSYNKQFLSKVEEKLPKDTDLIVACQ-KGLRSLAACELLYN------------AGYRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 163 ~~~~~~f~~~~~~~l~kd~~IVvyC~-~G~RS~~aa~~L~~------------~Gy~nV~~L~GG~~aw~~~~lp~ 225 (297)
....-.+..-+||||. +..|...+|..|+. .-|..+|+|+|||++|...--.+
T Consensus 215 ----------~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~~~~L 280 (325)
T KOG3772|consen 215 ----------GVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSNYPNL 280 (325)
T ss_pred ----------ccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHhcccc
Confidence 0000012346899998 77799999999995 35678999999999999875544
No 57
>COG2603 Predicted ATPase [General function prediction only]
Probab=99.18 E-value=1.8e-12 Score=120.11 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=104.7
Q ss_pred HHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCc-cccHHHHHHHHhcC
Q 022409 99 AGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTL-SYNKQFLSKVEEKL 177 (297)
Q Consensus 99 l~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~-~~~~~f~~~~~~~l 177 (297)
..+.+...+..+||||.|-||..|+.|+++|+|..+.+++..+||.|||.+....-+ .|-... -....+.-.....+
T Consensus 7 ~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~a--lg~~~vcG~i~~~~l~ask~f 84 (334)
T COG2603 7 DYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKA--LGHALVCGEIRQQRLEASKAF 84 (334)
T ss_pred HHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHH--HHHHHHHhHHHHHHHHHHHHH
Confidence 333333567889999999999999999999999999999999999999966433322 121110 01111111111112
Q ss_pred CCCCeEEEEeC-CCCcHHHHHHHH-HHcCCCCEEEccccHHHHHhCCCCcc-CCCCCcccccCcccCcccchhhhccc
Q 022409 178 PKDTDLIVACQ-KGLRSLAACELL-YNAGYRNLFWVQGGLEAAEEEDLVRE-GPQPLKFAGIGGLSEFLGYTSQLCYP 252 (297)
Q Consensus 178 ~kd~~IVvyC~-~G~RS~~aa~~L-~~~Gy~nV~~L~GG~~aw~~~~lp~~-~~~~~~~~~~~G~t~~~gkT~~l~~l 252 (297)
-.+.|+-++|. ||.||...+.+| +..|++ +-.+.||+++++.-...-. ..-..+...+.|+| +.|||++.+.+
T Consensus 85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt~~~~a~~~~i~~k~~il~g~T-gcgkt~lve~l 160 (334)
T COG2603 85 QEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRTFAIQATIKEIAQKDFILCGCT-GCGKTELVEQL 160 (334)
T ss_pred HHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHHHHHHHHHHHhccCCEEEeCCC-CCcHHHHHHhC
Confidence 23456666696 889999999999 778985 7789999999988543322 22345667778877 59999998887
No 58
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.07 E-value=1.7e-10 Score=109.37 Aligned_cols=104 Identities=23% Similarity=0.306 Sum_probs=83.2
Q ss_pred CCCcccCHHHHHHHhcC-CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 89 GKVKVLTPREAGYAVQL-SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~-~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
....+|+..|+++.++. ...+|||||++.||+..|+|+|+|||+.+++.+.. |+
T Consensus 314 ~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-----~~-------------------- 368 (427)
T KOG2017|consen 314 EPDERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-----KK-------------------- 368 (427)
T ss_pred ChhhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-----hh--------------------
Confidence 44567899999988876 57899999999999999999999999998876631 10
Q ss_pred HHHHHHHhcC-CCCCeEEEEeCCCCcHHHHHHHHHHcCCC-CEEEccccHHHHHhCC
Q 022409 168 QFLSKVEEKL-PKDTDLIVACQKGLRSLAACELLYNAGYR-NLFWVQGGLEAAEEED 222 (297)
Q Consensus 168 ~f~~~~~~~l-~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~-nV~~L~GG~~aw~~~~ 222 (297)
....+ ...++|+|+|+.|..|..|++.|++...+ +|..+.||+++|...-
T Consensus 369 -----~~~~~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 369 -----LQGDLNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred -----hcccccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 01122 24568999999999999999999986543 4668899999998863
No 59
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.96 E-value=5.3e-09 Score=97.09 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=92.1
Q ss_pred cccCHHHHHHHhcCCCcEEEEeC---------ChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCC
Q 022409 92 KVLTPREAGYAVQLSSKTLLDVR---------PSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPT 162 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlIDVR---------s~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~ 162 (297)
..++++.+.+.+...+..|||.- ...||..-|||||+++.+........ -.+.
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~------------------~~~~ 66 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSS------------------PYRH 66 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCC------------------cccc
Confidence 35778888888777778999975 45688899999999999887665432 2334
Q ss_pred cccc-HHHHHHHHh-cCCCCCeEEEEeC--CCC-cHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccC
Q 022409 163 LSYN-KQFLSKVEE-KLPKDTDLIVACQ--KGL-RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREG 227 (297)
Q Consensus 163 ~~~~-~~f~~~~~~-~l~kd~~IVvyC~--~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~ 227 (297)
+.+. ..|-+.+.. .++++..+|||.+ +|| -|..++|.++-+|+++|+.|.||+.+|+..++|+..
T Consensus 67 ~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s 136 (286)
T KOG1529|consen 67 MLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS 136 (286)
T ss_pred cCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence 4444 344444442 2678889999999 888 688899999999999999999999999999999864
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.82 E-value=1.4e-08 Score=95.38 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=80.5
Q ss_pred CCCCcccCHHHHHHHhcCC------CcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCC
Q 022409 88 DGKVKVLTPREAGYAVQLS------SKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVP 161 (297)
Q Consensus 88 ~~~~~~Is~eel~~~l~~~------~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~ 161 (297)
.+.+++|++|.++..++.. +.+|||+|-+.||..|||-.|+||.-..
T Consensus 238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~--------------------------- 290 (427)
T COG5105 238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTK--------------------------- 290 (427)
T ss_pred ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHH---------------------------
Confidence 3678999999999988642 5679999999999999999999998321
Q ss_pred CccccHHHHHHHHhc-CCCCCeEEEEeC-CCCcHHHHHHHHHHcC------------CCCEEEccccHHHHHhCCCCc
Q 022409 162 TLSYNKQFLSKVEEK-LPKDTDLIVACQ-KGLRSLAACELLYNAG------------YRNLFWVQGGLEAAEEEDLVR 225 (297)
Q Consensus 162 ~~~~~~~f~~~~~~~-l~kd~~IVvyC~-~G~RS~~aa~~L~~~G------------y~nV~~L~GG~~aw~~~~lp~ 225 (297)
.+...+..+ +..-.-+|++|. +..|+...|..|+.+. |..||+|+|||+++....-.+
T Consensus 291 ------~l~~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~p~l 362 (427)
T COG5105 291 ------KLGLLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNYPDL 362 (427)
T ss_pred ------HHHHHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcCccc
Confidence 111222212 223356999998 8889999999999764 678999999999988764433
No 61
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=98.51 E-value=2.1e-07 Score=86.53 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCcEEEEeCChhhhc-----------ccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHH
Q 022409 106 SSKTLLDVRPSTERK-----------KAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVE 174 (297)
Q Consensus 106 ~~~vlIDVRs~~Ef~-----------~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~ 174 (297)
.+...||.|+..+|. .||||||+|+|+.++-... |++. +..+....+.
T Consensus 171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~--g~~k-------------------~~edl~~~f~ 229 (286)
T KOG1529|consen 171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD--GFIK-------------------PAEDLKHLFA 229 (286)
T ss_pred ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc--cccC-------------------CHHHHHHHHH
Confidence 468899999988884 5899999999987654321 1111 1233434443
Q ss_pred h-cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 175 E-KLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 175 ~-~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
+ .+..++|+|+-|..|..+...+-.|...| .++..++|++..|.-
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 3 35668899999999999999999999999 579999999999985
No 62
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.85 E-value=0.0047 Score=51.64 Aligned_cols=88 Identities=24% Similarity=0.287 Sum_probs=50.7
Q ss_pred CcccCHHHHHHHhcCCCcEEEEeCChhhhcccc----------cCC--eEecCCCCCcccccCCCCCccccccccCCccC
Q 022409 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKAW----------IKG--SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWS 158 (297)
Q Consensus 91 ~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~gh----------IpG--AinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~ 158 (297)
...++++++..+.+.+=..+||.|++.|..... -+| -+++|+..-. +
T Consensus 12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-------~-------------- 70 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-------I-------------- 70 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-------C--------------
Confidence 356777777665555555899999988754311 123 3566654210 0
Q ss_pred CCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHH-HcCC
Q 022409 159 GVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLY-NAGY 205 (297)
Q Consensus 159 G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~-~~Gy 205 (297)
.......|.+.+. . .++||++||++|.|+..++.++. ..|.
T Consensus 71 ---~~~~v~~f~~~~~-~--~~~pvL~HC~sG~Rt~~l~al~~~~~g~ 112 (135)
T TIGR01244 71 ---TPDDVETFRAAIG-A--AEGPVLAYCRSGTRSSLLWGFRQAAEGV 112 (135)
T ss_pred ---CHHHHHHHHHHHH-h--CCCCEEEEcCCChHHHHHHHHHHHHcCC
Confidence 0011233333333 2 35799999999999888765433 3454
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.64 E-value=0.0075 Score=49.03 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=42.1
Q ss_pred CcccCHHHHHHHhcCCCcEEEEeCChhhhccc-c---------cC--CeEecCCCCCcccccCCCCCccccccccCCccC
Q 022409 91 VKVLTPREAGYAVQLSSKTLLDVRPSTERKKA-W---------IK--GSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWS 158 (297)
Q Consensus 91 ~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~g-h---------Ip--GAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~ 158 (297)
...++++++.++-+.+=..||+.|+..|-..- . =- ..+|+|+..-.-.
T Consensus 12 s~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~-------------------- 71 (110)
T PF04273_consen 12 SGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAIT-------------------- 71 (110)
T ss_dssp ECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----------------------
T ss_pred CCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCC--------------------
Confidence 35688889888776665689999998764210 0 01 2477775431100
Q ss_pred CCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHH
Q 022409 159 GVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLY 201 (297)
Q Consensus 159 G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~ 201 (297)
......|.+.+. .. .+||.+||++|.||..++.+-+
T Consensus 72 ----~~~v~~f~~~l~-~~--~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 72 ----EEDVEAFADALE-SL--PKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp ----HHHHHHHHHHHH-TT--TTSEEEE-SCSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH-hC--CCCEEEECCCChhHHHHHHHHh
Confidence 012233433333 33 4699999999999977665543
No 64
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=94.31 E-value=0.14 Score=41.66 Aligned_cols=78 Identities=18% Similarity=0.392 Sum_probs=43.6
Q ss_pred CcEEEEeCChhhhcccccCC--eEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHHHHHHHHhcCCCCCeEE
Q 022409 107 SKTLLDVRPSTERKKAWIKG--SIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLSKVEEKLPKDTDLI 184 (297)
Q Consensus 107 ~~vlIDVRs~~Ef~~ghIpG--AinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~~~~~~l~kd~~IV 184 (297)
=..+||++++.+...-+.+| -.++|+.+.... ......+.+++.+......+++|+
T Consensus 28 i~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~----------------------~~~~~~~~~~~~i~~~~~~~~~vl 85 (139)
T cd00127 28 ITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ----------------------DISKYFDEAVDFIDDAREKGGKVL 85 (139)
T ss_pred CCEEEEcccCCCCcccCCCCceEEEEEceeCCCC----------------------ChHHHHHHHHHHHHHHHhcCCcEE
Confidence 34799999988862222222 456665432211 001122333344443344567999
Q ss_pred EEeCCCC-cHHHH--HHHHHHcCCC
Q 022409 185 VACQKGL-RSLAA--CELLYNAGYR 206 (297)
Q Consensus 185 vyC~~G~-RS~~a--a~~L~~~Gy~ 206 (297)
|+|..|. ||..+ +.++...|++
T Consensus 86 VHC~~G~~Rs~~~~~~~l~~~~~~~ 110 (139)
T cd00127 86 VHCLAGVSRSATLVIAYLMKTLGLS 110 (139)
T ss_pred EECCCCCchhHHHHHHHHHHHcCCC
Confidence 9999887 88754 4556666653
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.32 E-value=0.055 Score=46.31 Aligned_cols=119 Identities=26% Similarity=0.351 Sum_probs=46.8
Q ss_pred hhhCCCCcccCHHHHHHHhcCCCcEEEEeCChhhhccc---ccCCe--EecCCCCCcccccCCCCCccccccccCCccCC
Q 022409 85 LIRDGKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKA---WIKGS--IWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSG 159 (297)
Q Consensus 85 ~~~~~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~g---hIpGA--inIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G 159 (297)
+.+.+....++.++...+.+.+=..+||.|++.|.+.. .++|. +|+|+....... ...+.+.... ....+.+
T Consensus 21 lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~-~~~~~~~~~~--~~~~~~~ 97 (164)
T PF13350_consen 21 LYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASS-PDKLAELLQS--SADAPRG 97 (164)
T ss_dssp EEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH-------------HHHHHHH
T ss_pred EEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeeccccccccc-cccccccccc--ccchhhH
Confidence 34445666777777766654444589999999998763 34454 567766544331 1111110000 0000111
Q ss_pred C----CCc-cccHHHHHHHHhc-CCCCCeEEEEeCCCC-cHH-HHHHHHHHcCCC
Q 022409 160 V----PTL-SYNKQFLSKVEEK-LPKDTDLIVACQKGL-RSL-AACELLYNAGYR 206 (297)
Q Consensus 160 ~----~~~-~~~~~f~~~~~~~-l~kd~~IVvyC~~G~-RS~-~aa~~L~~~Gy~ 206 (297)
+ ..+ ......+.++... .+...|++++|..|. |.- .+|-+|..+|.+
T Consensus 98 ~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 98 MLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 1 011 1112223333222 223369999999887 655 455556667875
No 66
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=93.20 E-value=0.013 Score=59.69 Aligned_cols=101 Identities=14% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCCcccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccHH
Q 022409 89 GKVKVLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNKQ 168 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~ 168 (297)
..+++|+++++..+ ....++|.|...||..+|+++++|+|...-+.+.+ |. .+.+
T Consensus 619 e~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~~ea~l~----------------~~-----~~l~- 673 (725)
T KOG1093|consen 619 EHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNNHEADLD----------------WL-----RFLP- 673 (725)
T ss_pred hcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccchHHHHH----------------Hh-----hcch-
Confidence 67899999998765 45679999999999999999999999773222211 00 0011
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
...+ .+++.++++..+...+......+..+-+.....+.+|+.+++
T Consensus 674 ~~~~-----~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~~ 719 (725)
T KOG1093|consen 674 GIVC-----SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNID 719 (725)
T ss_pred HhHH-----hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhcC
Confidence 1111 134455655555556666667777777777778888887543
No 67
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.23 E-value=0.13 Score=48.24 Aligned_cols=154 Identities=14% Similarity=0.111 Sum_probs=81.2
Q ss_pred ccCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCccc-ccCCCCCccccccccCCccCCCCCccccHHHHH
Q 022409 93 VLTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDT-FDAGSLPQKVTNFVMGGWWSGVPTLSYNKQFLS 171 (297)
Q Consensus 93 ~Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~-~~~gtl~k~~~~~~~~~~w~G~~~~~~~~~f~~ 171 (297)
.++.+++.+.+..++.+++|+|+ +..||.+|+|+-+..+-.+ ..-|.+.-+. .. +.....+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra-------------~~-p~~~d~~ 66 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRA-------------LF-PRSCDDK 66 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCccee-------------cc-CCccccc
Confidence 46778888888888999999999 6779999999887655443 2111111100 00 0000000
Q ss_pred HHHhcCCCCCeEEEEeCCCC--c-----HHH---HHHHHHHcCCCCEEEccccHHHHHhCCCCc-cC-CCCCcccccCcc
Q 022409 172 KVEEKLPKDTDLIVACQKGL--R-----SLA---ACELLYNAGYRNLFWVQGGLEAAEEEDLVR-EG-PQPLKFAGIGGL 239 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~--R-----S~~---aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~-~~-~~~~~~~~~~G~ 239 (297)
.....- +..++|.|..+.. . ... .-..++..|+. +|.|.||+..++.+--+. ++ ... ...|++|.
T Consensus 67 ~~~~~c-~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e~~~~ceT~~~~-s~PGlgsl 143 (343)
T KOG1717|consen 67 RFPARC-GTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAEASEHCETNLDG-SSPGLGSL 143 (343)
T ss_pred cccccC-CcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhhhhhhccccccc-CCCccccc
Confidence 000000 2357888886511 0 111 11335567995 999999999988863222 21 111 22255554
Q ss_pred cCcccchhhhccc----chhcCCCCcchhhHH
Q 022409 240 SEFLGYTSQLCYP----FLHISYPSTSFSKMT 267 (297)
Q Consensus 240 t~~~gkT~~l~~l----~~~~g~~~~~~~~~~ 267 (297)
--...-.|....+ +...|-+|+.|+-.+
T Consensus 144 ~~~Sd~sd~es~~~r~~~ds~G~~ra~FPV~i 175 (343)
T KOG1717|consen 144 RISSDCSDNESDLDRDPEDSDGPQRASFPVEI 175 (343)
T ss_pred cccccCccchhhhhcccccccCCcccCcchhh
Confidence 3222222444333 122363388888654
No 68
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=91.76 E-value=0.6 Score=38.21 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=22.7
Q ss_pred CCCCCeEEEEeCCCC-cHHH--HHHHHHHcCCC
Q 022409 177 LPKDTDLIVACQKGL-RSLA--ACELLYNAGYR 206 (297)
Q Consensus 177 l~kd~~IVvyC~~G~-RS~~--aa~~L~~~Gy~ 206 (297)
...+.+|+|+|..|. ||.. ++.++...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 456789999999886 8764 55667778874
No 69
>PLN02727 NAD kinase
Probab=88.96 E-value=1.5 Score=47.48 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=22.8
Q ss_pred CCcccCHHHHHHHhcCCCcEEEEeCChhh
Q 022409 90 KVKVLTPREAGYAVQLSSKTLLDVRPSTE 118 (297)
Q Consensus 90 ~~~~Is~eel~~~l~~~~~vlIDVRs~~E 118 (297)
....++++++..+.+.+=..||+.|++.|
T Consensus 265 rsgQpspe~la~LA~~GfKTIINLRpd~E 293 (986)
T PLN02727 265 RGGQVTEEGLKWLLEKGFKTIVDLRAEIV 293 (986)
T ss_pred EeCCCCHHHHHHHHHCCCeEEEECCCCCc
Confidence 45678999987776655458999999887
No 70
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=88.74 E-value=1.1 Score=36.33 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=22.0
Q ss_pred CCCCCeEEEEeCCCC-cHHH--HHHHHHHcCCC
Q 022409 177 LPKDTDLIVACQKGL-RSLA--ACELLYNAGYR 206 (297)
Q Consensus 177 l~kd~~IVvyC~~G~-RS~~--aa~~L~~~Gy~ 206 (297)
..++.+|+|+|..|. ||.. ++.++...|++
T Consensus 70 ~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 70 ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 446789999999887 7764 55566667774
No 71
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.50 E-value=4.3 Score=33.77 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=47.9
Q ss_pred CCcccCHHHHHHHhcCCCcEEEEeCChhhhcc-------------cccCCeEecCCCCCcccccCCCCCccccccccCCc
Q 022409 90 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKK-------------AWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGW 156 (297)
Q Consensus 90 ~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~-------------ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~ 156 (297)
-...++++++.++-..+=..+|--||..|-.. ..+. ..+||+.. ++
T Consensus 12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~-------~~------------- 70 (130)
T COG3453 12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTG-------GG------------- 70 (130)
T ss_pred ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCC-------CC-------------
Confidence 34678888887765555457899998776521 1111 34555321 01
Q ss_pred cCCCCCccccHHHHHHHHhcC-CCCCeEEEEeCCCCcHHHHHHHHH
Q 022409 157 WSGVPTLSYNKQFLSKVEEKL-PKDTDLIVACQKGLRSLAACELLY 201 (297)
Q Consensus 157 w~G~~~~~~~~~f~~~~~~~l-~kd~~IVvyC~~G~RS~~aa~~L~ 201 (297)
..++-++.+.+.+ ..+.||+.||++|.||.....+-.
T Consensus 71 --------iT~~dV~~f~~Al~eaegPVlayCrsGtRs~~ly~~~~ 108 (130)
T COG3453 71 --------ITEADVEAFQRALDEAEGPVLAYCRSGTRSLNLYGLGE 108 (130)
T ss_pred --------CCHHHHHHHHHHHHHhCCCEEeeecCCchHHHHHHHHH
Confidence 1122223333222 245799999999999987765443
No 72
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=80.91 E-value=0.36 Score=46.12 Aligned_cols=42 Identities=12% Similarity=-0.021 Sum_probs=32.2
Q ss_pred cCHHHHHHHhcCCCcEEEEeCChhhhcccccCCeEecCCCCCc
Q 022409 94 LTPREAGYAVQLSSKTLLDVRPSTERKKAWIKGSIWIPIFDID 136 (297)
Q Consensus 94 Is~eel~~~l~~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~ 136 (297)
-+++++.+.+.. ....+|+|....|+.+||||++|+|...+.
T Consensus 16 ~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~~~~~ 57 (314)
T PRK00142 16 EDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTIEQTE 57 (314)
T ss_pred CCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecHHHHH
Confidence 455666665532 356899999999999999999999975443
No 73
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=80.46 E-value=2.7 Score=36.70 Aligned_cols=39 Identities=33% Similarity=0.565 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCC-cHHH--HHHHHHHcCC
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGL-RSLA--ACELLYNAGY 205 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~-RS~~--aa~~L~~~Gy 205 (297)
..+++-+.+...++++|+|+|.+|. ||.. +|+.|...|.
T Consensus 92 ~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 92 DKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 3444444445567779999999887 8765 4456666454
No 74
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=76.43 E-value=2.4 Score=37.14 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=22.1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCC-cHHH-HHHHHHHcC
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGL-RSLA-ACELLYNAG 204 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~-RS~~-aa~~L~~~G 204 (297)
++.++...+..+++|+++|++|. |+-. ||-+|-+.|
T Consensus 122 i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 122 ILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 44455555667889999999988 7654 666666665
No 75
>PRK12361 hypothetical protein; Provisional
Probab=73.82 E-value=6.9 Score=39.96 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=20.0
Q ss_pred HHHHhcCCCCCeEEEEeCCCC-cHHH--HHHHHHH
Q 022409 171 SKVEEKLPKDTDLIVACQKGL-RSLA--ACELLYN 202 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~-RS~~--aa~~L~~ 202 (297)
+.+.+....+.+|+|+|..|. ||.. +|++|..
T Consensus 166 ~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~ 200 (547)
T PRK12361 166 NWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK 200 (547)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh
Confidence 333333445679999999776 8765 3444433
No 76
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=72.79 E-value=4.2 Score=40.96 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=23.3
Q ss_pred CcEEEEeCChhhhcccccCCeEecCC
Q 022409 107 SKTLLDVRPSTERKKAWIKGSIWIPI 132 (297)
Q Consensus 107 ~~vlIDVRs~~Ef~~ghIpGAinIPl 132 (297)
+..+||+|+...|..||+..|.|+.-
T Consensus 326 rFFiVDcRpaeqynaGHlstaFhlDc 351 (669)
T KOG3636|consen 326 RFFIVDCRPAEQYNAGHLSTAFHLDC 351 (669)
T ss_pred EEEEEeccchhhcccccchhhhcccH
Confidence 46799999999999999999988874
No 77
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=68.30 E-value=10 Score=32.62 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCC---cHHHHHHHHHHcCCCCEEE
Q 022409 178 PKDTDLIVACQKGL---RSLAACELLYNAGYRNLFW 210 (297)
Q Consensus 178 ~kd~~IVvyC~~G~---RS~~aa~~L~~~Gy~nV~~ 210 (297)
++..+|++.|..|. ....+|++|.+.||+ |..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 67789999998665 788999999999995 765
No 78
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=68.10 E-value=9.7 Score=36.41 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=31.2
Q ss_pred CCcccCHHHHHHHhcCCCcEEEEeCChhhhcc---cccC
Q 022409 90 KVKVLTPREAGYAVQLSSKTLLDVRPSTERKK---AWIK 125 (297)
Q Consensus 90 ~~~~Is~eel~~~l~~~~~vlIDVRs~~Ef~~---ghIp 125 (297)
....+...++.+.+...+..+||+|+..+|.. ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 36778889999888777789999999999998 8888
No 79
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=66.79 E-value=15 Score=33.78 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCC---CCCeEEEEeCCCCcHHHHH-----HHHHHcCCCCEEE
Q 022409 167 KQFLSKVEEKLP---KDTDLIVACQKGLRSLAAC-----ELLYNAGYRNLFW 210 (297)
Q Consensus 167 ~~f~~~~~~~l~---kd~~IVvyC~~G~RS~~aa-----~~L~~~Gy~nV~~ 210 (297)
..+++.+++.+| ++..+|+.|.|......+| ..|...||+||+.
T Consensus 121 e~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v 172 (265)
T COG4822 121 EICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFV 172 (265)
T ss_pred HHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEE
Confidence 356667776666 7778999999777544443 3467789999884
No 80
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=66.77 E-value=7.5 Score=33.06 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCCCeEEEEeCC-----CCcHHHHHHHHHHcCCCCEEEccccHHHHH
Q 022409 178 PKDTDLIVACQK-----GLRSLAACELLYNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 178 ~kd~~IVvyC~~-----G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~ 219 (297)
+++.+++++|-. |+.-..++.+|+++|..+...|+||-.+-.
T Consensus 98 ~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 98 TADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp -TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred eCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 456677766643 677888999999999999999999976644
No 81
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=66.44 E-value=14 Score=32.90 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=29.2
Q ss_pred HHHhcCCCCCeEEEEeCC---CCcHHHHHHHHHHcCCCCEEEc
Q 022409 172 KVEEKLPKDTDLIVACQK---GLRSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~---G~RS~~aa~~L~~~Gy~nV~~L 211 (297)
.+.+.+++.++|+|+|.. |.....+|++|.+.|++ |+.+
T Consensus 37 ~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~-V~~~ 78 (205)
T TIGR00197 37 AVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE-VFLL 78 (205)
T ss_pred HHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE-EEEE
Confidence 333345556789999974 45889999999988885 8865
No 82
>COG2603 Predicted ATPase [General function prediction only]
Probab=66.13 E-value=0.066 Score=50.62 Aligned_cols=59 Identities=5% Similarity=-0.076 Sum_probs=43.9
Q ss_pred cccCHHHHHHHhcCCCcEEEE-eCChhhhcccccCCeEecCCCCCcccccCCCCCccccc
Q 022409 92 KVLTPREAGYAVQLSSKTLLD-VRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTN 150 (297)
Q Consensus 92 ~~Is~eel~~~l~~~~~vlID-VRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~ 150 (297)
+.....+....++..+.+++| .+++.++-....|+|||++......-...|-+++++..
T Consensus 127 rt~~~~a~~~~i~~k~~il~g~Tgcgkt~lve~lp~aidlE~~a~h~gssFGrt~~~q~~ 186 (334)
T COG2603 127 RTFAIQATIKEIAQKDFILCGCTGCGKTELVEQLPNAIDLEGLANHRGSSFGRTLEPQPS 186 (334)
T ss_pred HHHHHHHHHHHhccCCEEEeCCCCCcHHHHHHhCCCccCcHhHHHHHHHHHHHhcCcCcc
Confidence 444455555556667889999 89999999999999999998776665556666665543
No 83
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=60.79 E-value=13 Score=32.14 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCCCeEEEEeCCCC-cHHHH
Q 022409 178 PKDTDLIVACQKGL-RSLAA 196 (297)
Q Consensus 178 ~kd~~IVvyC~~G~-RS~~a 196 (297)
.++.+|+|+|..|. ||..+
T Consensus 96 ~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred cCCCeEEEECCCCCCHHHHH
Confidence 45789999999776 87753
No 84
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=59.77 E-value=14 Score=34.16 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCC-cHHH-HHHHHHHcCCC
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGL-RSLA-ACELLYNAGYR 206 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~-RS~~-aa~~L~~~Gy~ 206 (297)
.+|++.+...+..+.+|+|+|..|. |+.. +|.+|-+.|++
T Consensus 157 ~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 157 SNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3455554444556779999999776 7654 45556567774
No 85
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=59.25 E-value=21 Score=32.16 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=30.0
Q ss_pred HHHHhcCCC--CCeEEEEeCCCC---cHHHHHHHHHHcCCCCEE-Eccc
Q 022409 171 SKVEEKLPK--DTDLIVACQKGL---RSLAACELLYNAGYRNLF-WVQG 213 (297)
Q Consensus 171 ~~~~~~l~k--d~~IVvyC~~G~---RS~~aa~~L~~~Gy~nV~-~L~G 213 (297)
+.+.+..+. ...|+|+|..|. ....+|+.|...||+ |. ++.|
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~~~ 85 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLLLG 85 (203)
T ss_pred HHHHHHcCcccCCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEEeC
Confidence 344445555 557999997554 789999999999985 65 3334
No 86
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=55.83 E-value=7.4 Score=31.84 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=29.7
Q ss_pred EEEEeCCCC-cHHHHHHHHHHc----CCCCEEEccccHHHH
Q 022409 183 LIVACQKGL-RSLAACELLYNA----GYRNLFWVQGGLEAA 218 (297)
Q Consensus 183 IVvyC~~G~-RS~~aa~~L~~~----Gy~nV~~L~GG~~aw 218 (297)
|+|.|.+.. ||..|..+|+++ +-.++.....|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 689999654 999999999988 556788888998766
No 87
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=6.2 Score=38.67 Aligned_cols=28 Identities=18% Similarity=-0.122 Sum_probs=21.5
Q ss_pred CcccccCcccCcccchhhhcccchhcCCC
Q 022409 231 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 231 ~~~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
.+.+-+-|.| |+|||+|-|+||+=.|.|
T Consensus 50 PKNILMIGpT-GVGKTEIARRLAkl~~aP 77 (444)
T COG1220 50 PKNILMIGPT-GVGKTEIARRLAKLAGAP 77 (444)
T ss_pred ccceEEECCC-CCcHHHHHHHHHHHhCCC
Confidence 4556677888 599999999995544666
No 88
>PRK10565 putative carbohydrate kinase; Provisional
Probab=55.02 E-value=26 Score=35.78 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHhcCCCCCeEEEEeCCCC---cHHHHHHHHHHcCCCCEEEc
Q 022409 172 KVEEKLPKDTDLIVACQKGL---RSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~---RS~~aa~~L~~~Gy~nV~~L 211 (297)
.+.+.+++..+|+|+|..|. +...+|++|.+.||+ |..+
T Consensus 52 ~i~~~~~~~~~v~vl~G~GNNGGDG~v~AR~L~~~G~~-V~v~ 93 (508)
T PRK10565 52 VARSAYPDARHWLVLCGHGNNGGDGYVVARLAQAAGID-VTLL 93 (508)
T ss_pred HHHHhcCCCCeEEEEEcCCCchHHHHHHHHHHHHCCCc-eEEE
Confidence 33334555568999997544 789999999999995 6544
No 89
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=54.90 E-value=30 Score=26.84 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
...+.+......+.+++|||..-..+..++..|.+.+. ++..+.|+..
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 63 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGS 63 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCC
Confidence 44444443343567899999988888999999998887 5888888853
No 90
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=53.62 E-value=23 Score=27.78 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=32.1
Q ss_pred CCCCCccccHHHHHHHHhcCCCCCeEEEEeCCCCcH-HHHHHHHHHcCCC
Q 022409 158 SGVPTLSYNKQFLSKVEEKLPKDTDLIVACQKGLRS-LAACELLYNAGYR 206 (297)
Q Consensus 158 ~G~~~~~~~~~f~~~~~~~l~kd~~IVvyC~~G~RS-~~aa~~L~~~Gy~ 206 (297)
.|-...+.-.++++.+++ .++++++.-+++.++ ...+..|+.+|++
T Consensus 11 ~g~~~ipga~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp ETTEE-TTHHHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred eCCCcCcCHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 333334455788888774 467899998888776 7888899999995
No 91
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=52.33 E-value=30 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.6
Q ss_pred CeEEEEeCCCC---cHHHHHHHHHHcCCCCEEEc
Q 022409 181 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 181 ~~IVvyC~~G~---RS~~aa~~L~~~Gy~nV~~L 211 (297)
++|+|+|..|. ....+|++|.+.||+ |.++
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 68999997554 788999999999995 7544
No 92
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=51.27 E-value=14 Score=35.74 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=30.4
Q ss_pred CCCcccCHHHHHHHhc------CCCcEEEEeCChhhhcccccCC
Q 022409 89 GKVKVLTPREAGYAVQ------LSSKTLLDVRPSTERKKAWIKG 126 (297)
Q Consensus 89 ~~~~~Is~eel~~~l~------~~~~vlIDVRs~~Ef~~ghIpG 126 (297)
+....++++++.+.++ ..+..+||||++. |+..++|+
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~ 316 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD 316 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC
Confidence 4567899999988873 2478899999988 99999985
No 93
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=51.06 E-value=23 Score=32.68 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=24.6
Q ss_pred CeEEEEeCCC---CcHHHHHHHHHHcCCCCEEEc
Q 022409 181 TDLIVACQKG---LRSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 181 ~~IVvyC~~G---~RS~~aa~~L~~~Gy~nV~~L 211 (297)
.+|+|+|..| .....+|++|.+.||+ |..+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 5899999744 4899999999999995 7654
No 94
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=49.17 E-value=35 Score=35.30 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=24.7
Q ss_pred CeEEEEeCCCC---cHHHHHHHHHHcCCCCEEEc
Q 022409 181 TDLIVACQKGL---RSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 181 ~~IVvyC~~G~---RS~~aa~~L~~~Gy~nV~~L 211 (297)
++|+|+|..|+ ....+|++|.+.||+ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 58999997554 788999999999995 7654
No 95
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=48.73 E-value=34 Score=25.51 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=18.4
Q ss_pred HHHHHHHhcC---CCCCeEEEEeCCCC-cHHHHH
Q 022409 168 QFLSKVEEKL---PKDTDLIVACQKGL-RSLAAC 197 (297)
Q Consensus 168 ~f~~~~~~~l---~kd~~IVvyC~~G~-RS~~aa 197 (297)
+|++.+.... +.+.||+|+|..|. |+...+
T Consensus 24 ~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00012 24 EFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH
Confidence 4445444332 23579999999665 776543
No 96
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=48.73 E-value=34 Score=25.51 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=18.4
Q ss_pred HHHHHHHhcC---CCCCeEEEEeCCCC-cHHHHH
Q 022409 168 QFLSKVEEKL---PKDTDLIVACQKGL-RSLAAC 197 (297)
Q Consensus 168 ~f~~~~~~~l---~kd~~IVvyC~~G~-RS~~aa 197 (297)
+|++.+.... +.+.||+|+|..|. |+...+
T Consensus 24 ~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~ 57 (105)
T smart00404 24 EFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFV 57 (105)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHH
Confidence 4445444332 23579999999665 776543
No 97
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=46.83 E-value=28 Score=28.28 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=25.7
Q ss_pred eEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHH
Q 022409 182 DLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 182 ~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
+|+|.|.+.. ||..|..+|+.++-.++.....|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 6899998554 9999999998876445656666654
No 98
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=43.89 E-value=39 Score=30.81 Aligned_cols=40 Identities=40% Similarity=0.707 Sum_probs=30.3
Q ss_pred cHHHHHHHHhcCCCCCeEEEEeCCCC-c--HHHHHHHHHHcCCC
Q 022409 166 NKQFLSKVEEKLPKDTDLIVACQKGL-R--SLAACELLYNAGYR 206 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC~~G~-R--S~~aa~~L~~~Gy~ 206 (297)
..+|++.+.... +..+|.|+|..|. | ...||++|+..|++
T Consensus 134 v~~fv~i~e~~~-~~g~iaVHCkaGlGRTG~liAc~lmy~~g~t 176 (225)
T KOG1720|consen 134 VKEFVKIVENAE-KGGKIAVHCKAGLGRTGTLIACYLMYEYGMT 176 (225)
T ss_pred HHHHHHHHHHHH-hcCeEEEEeccCCCchhHHHHHHHHHHhCCC
Confidence 346666666444 3789999998776 5 57899999999986
No 99
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=42.50 E-value=22 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred EEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHHH
Q 022409 183 LIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 183 IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw 218 (297)
|+|.|.+.. ||..|..+|++..=.++.....|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 578898554 999999999876533476777787765
No 100
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=42.30 E-value=36 Score=30.55 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=23.6
Q ss_pred eEEEEeCCCC-cHHHHHHHHHHcCCCCEEEc
Q 022409 182 DLIVACQKGL-RSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 182 ~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L 211 (297)
.+.+.|.+.+ ||..|-..|++.|| +|.-+
T Consensus 3 ~~avVCasN~NRSMEAH~~L~~~G~-~V~Sf 32 (195)
T PF04722_consen 3 RFAVVCASNQNRSMEAHNVLKKAGF-NVRSF 32 (195)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEccCCCCcCHHHHHHHHHCCC-ceEee
Confidence 5788999665 99999999999999 57665
No 101
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.99 E-value=30 Score=27.07 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=28.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHH----HHcCCCCEEEccccHHHHHh
Q 022409 180 DTDLIVACQKGLRSLAACELL----YNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L----~~~Gy~nV~~L~GG~~aw~~ 220 (297)
.++|++.|.+|+-|..++.-+ ++.|++ +-.-..++.....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~~~ 46 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAAGE 46 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHHHh
Confidence 358999999999776666554 457885 6666667666543
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=41.76 E-value=7 Score=30.67 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=20.2
Q ss_pred cccCcccCcccchhhhcccchhcCCC
Q 022409 234 AGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 234 ~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
.++.|.+ |+|||-+-+.|+++-|++
T Consensus 2 I~I~G~~-gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPP-GSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEST-TSSHHHHHHHHHHHHTCE
T ss_pred EEEECCC-CCCHHHHHHHHHHHHCCe
Confidence 4678998 599999999995555985
No 103
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=41.47 E-value=41 Score=31.44 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=23.8
Q ss_pred CCCCCeEEEEeCCCC-cHH--HHHHHHHHcCCC
Q 022409 177 LPKDTDLIVACQKGL-RSL--AACELLYNAGYR 206 (297)
Q Consensus 177 l~kd~~IVvyC~~G~-RS~--~aa~~L~~~Gy~ 206 (297)
..++..|+|+|..|. ||. .+|.+|+..|..
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~ 184 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLS 184 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCC
Confidence 356789999999776 877 678888888863
No 104
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=41.39 E-value=37 Score=33.14 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=27.4
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 178 PKDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 178 ~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
+++.+|+|.+.||..|..++.+|.+.||+ |.
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G~~-V~ 33 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAGYE-VT 33 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcCCe-EE
Confidence 46678999999999999999999999995 64
No 105
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=40.90 E-value=22 Score=33.14 Aligned_cols=93 Identities=20% Similarity=0.302 Sum_probs=54.4
Q ss_pred CcccCHHHHHHHhc----CCCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCcccc
Q 022409 91 VKVLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYN 166 (297)
Q Consensus 91 ~~~Is~eel~~~l~----~~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~ 166 (297)
+..++.+++.++++ .+=-+||.|++..|.+..---|+.-|-+.+ +.+..+..+
T Consensus 139 ~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINn-----------------------RdL~tf~vd 195 (254)
T PF00218_consen 139 AAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINN-----------------------RDLKTFEVD 195 (254)
T ss_dssp GGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEES-----------------------BCTTTCCBH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeC-----------------------ccccCcccC
Confidence 34555666555543 233489999999998865433442222111 111222233
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCE
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNL 208 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV 208 (297)
.+-..++...+|++ +++...+|..+..-+..|..+||+.|
T Consensus 196 ~~~~~~l~~~ip~~--~~~iseSGI~~~~d~~~l~~~G~dav 235 (254)
T PF00218_consen 196 LNRTEELAPLIPKD--VIVISESGIKTPEDARRLARAGADAV 235 (254)
T ss_dssp THHHHHHHCHSHTT--SEEEEESS-SSHHHHHHHCTTT-SEE
T ss_pred hHHHHHHHhhCccc--eeEEeecCCCCHHHHHHHHHCCCCEE
Confidence 34445556567654 67778999999999999999999733
No 106
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=40.17 E-value=46 Score=34.48 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccH
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL 215 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~ 215 (297)
+.|+|+|.+.-..+..+|..|.++|| +++.|-||-
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCc
Confidence 45899999877889999999999999 599999984
No 107
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.53 E-value=33 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=28.4
Q ss_pred eEEEEeCCCCcHHHHHHHHH----HcCCCCEEEccccHHHHHh
Q 022409 182 DLIVACQKGLRSLAACELLY----NAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~----~~Gy~nV~~L~GG~~aw~~ 220 (297)
+|++.|.+|+-|..++..++ +.|++ +..-..+......
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~~~ 43 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSHYD 43 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHHH
Confidence 48999999988877776655 57984 7777777776554
No 108
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=38.27 E-value=91 Score=30.30 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=44.1
Q ss_pred CeEEEEe-CCCCc---HHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccCCCCCcccccCccc
Q 022409 181 TDLIVAC-QKGLR---SLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLS 240 (297)
Q Consensus 181 ~~IVvyC-~~G~R---S~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~~~~~~~~~~~G~t 240 (297)
+|.|+.| ..|.. -..+-+.+.++|-++||..+-++.+-...++|...+......-|||=|
T Consensus 101 ~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGT 164 (342)
T COG1077 101 KPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGT 164 (342)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCc
Confidence 4556666 46653 234566788899999999999999999999999766666666565543
No 109
>PRK13530 arsenate reductase; Provisional
Probab=37.29 E-value=56 Score=26.96 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=26.3
Q ss_pred CeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHH
Q 022409 181 TDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 181 ~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
++|+|.|.+.. ||..|..+++.+.=+++.....|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 47999998554 9999998888754345666677753
No 110
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=37.07 E-value=74 Score=24.68 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=25.5
Q ss_pred eEEEEeCCCCcHHHH-H----HHHHHcCCCCEEEccccHHHHHh
Q 022409 182 DLIVACQKGLRSLAA-C----ELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 182 ~IVvyC~~G~RS~~a-a----~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
+|++.|.+|.-+..+ + ..|.+.|++ +-.....+.....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~~ 46 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIET 46 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHhh
Confidence 699999999954444 3 456668984 6555556665543
No 111
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=36.77 E-value=14 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=20.8
Q ss_pred cccCcccCcccchhhhcccchhcCCC
Q 022409 234 AGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 234 ~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
+.+.|.+ |.|||.+-+.|+++.|+|
T Consensus 2 I~i~G~~-GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPA-GSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCc
Confidence 3567888 599999999997777987
No 112
>PRK10126 tyrosine phosphatase; Provisional
Probab=36.69 E-value=31 Score=28.84 Aligned_cols=37 Identities=30% Similarity=0.340 Sum_probs=27.5
Q ss_pred CeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHHH
Q 022409 181 TDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 181 ~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw 218 (297)
.+|+|+|.+.. ||..|..+|++.+- ++.....|..+|
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~ 40 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGAL 40 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCC
Confidence 47999998655 99999999998763 355566676544
No 113
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=36.59 E-value=10 Score=29.64 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.6
Q ss_pred ccCcccCcccchhhhcccchhc
Q 022409 235 GIGGLSEFLGYTSQLCYPFLHI 256 (297)
Q Consensus 235 ~~~G~t~~~gkT~~l~~l~~~~ 256 (297)
+++|.+ |+|||-+.+.| +++
T Consensus 2 ~i~G~~-GsGKtTia~~L-~~~ 21 (129)
T PF13238_consen 2 GISGIP-GSGKTTIAKEL-AER 21 (129)
T ss_dssp EEEEST-TSSHHHHHHHH-HHH
T ss_pred EEECCC-CCCHHHHHHHH-HHH
Confidence 578888 59999999999 554
No 114
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.20 E-value=42 Score=25.02 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEEeCCCCcHHHHH-H----HHHHcCCCCEEEcccc
Q 022409 182 DLIVACQKGLRSLAAC-E----LLYNAGYRNLFWVQGG 214 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa-~----~L~~~Gy~nV~~L~GG 214 (297)
+|++.|.+|+-+..++ . .+.+.|++ +....+.
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 5899999999665555 4 45567885 5554444
No 115
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=35.94 E-value=1.1e+02 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHhhhhc
Q 022409 267 TYVIIHAMDSLYVGNL-RNWWNILEIIKDIE 296 (297)
Q Consensus 267 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 296 (297)
.+..+.++|+|+.+-. +..+...+.++.++
T Consensus 243 ~~a~l~l~d~L~~~~~~~~~~~~~~~~~~~~ 273 (281)
T COG1737 243 RIAQLALIDALITAVAQRRGEAALKRLKRIK 273 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678889999998854 45566666665543
No 116
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=35.63 E-value=38 Score=27.10 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=26.5
Q ss_pred eEEEEeCCCCcHHHHHHHH----HHcCCCCEEEccccHHHHH
Q 022409 182 DLIVACQKGLRSLAACELL----YNAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L----~~~Gy~nV~~L~GG~~aw~ 219 (297)
+|++.|.+|+-|..++..+ ++.|++ +..-..+.....
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~~ 43 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEGE 43 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHHH
Confidence 6899999999777766655 457885 666666666544
No 117
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.90 E-value=15 Score=30.45 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=21.5
Q ss_pred ccccCcccCcccchhhhcccchhcCCC
Q 022409 233 FAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 233 ~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
..+++|.+ |.|||.+.+.++++.|||
T Consensus 2 iI~i~G~~-GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 2 IITISGPP-GSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 35678888 599999999996667997
No 118
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.66 E-value=40 Score=26.25 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=26.3
Q ss_pred eEEEEeCCCCcHHHHHHHHH----HcCCCCEEEccccHHHHH
Q 022409 182 DLIVACQKGLRSLAACELLY----NAGYRNLFWVQGGLEAAE 219 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~----~~Gy~nV~~L~GG~~aw~ 219 (297)
+|++.|.+|+.|..++..++ +.|++ +..-..++....
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~~ 41 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESELE 41 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHHH
Confidence 48899999998777665554 57885 666666666654
No 119
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.45 E-value=59 Score=29.52 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCCEEEccccHHHHHhC-----CCCccC-------------CCCCcccccCcccCcccchhhhcccchh
Q 022409 194 LAACELLYNAGYRNLFWVQGGLEAAEEE-----DLVREG-------------PQPLKFAGIGGLSEFLGYTSQLCYPFLH 255 (297)
Q Consensus 194 ~~aa~~L~~~Gy~nV~~L~GG~~aw~~~-----~lp~~~-------------~~~~~~~~~~G~t~~~gkT~~l~~l~~~ 255 (297)
...+..|++.|-+ ||.+.||+...... +.|.++ ...++..+- .+.+=||-++++.+ ++
T Consensus 94 ~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~p--tsdsggKa~~i~~l-rk 169 (227)
T KOG1615|consen 94 RELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEP--TSDSGGKAEVIALL-RK 169 (227)
T ss_pred HHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCc--cccCCccHHHHHHH-Hh
Confidence 3667777777774 77778877654441 344321 011111112 22233899999998 44
Q ss_pred cCCC
Q 022409 256 ISYP 259 (297)
Q Consensus 256 ~g~~ 259 (297)
||+
T Consensus 170 -~~~ 172 (227)
T KOG1615|consen 170 -NYN 172 (227)
T ss_pred -CCC
Confidence 776
No 120
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=34.38 E-value=46 Score=29.46 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=19.6
Q ss_pred HHHHHHHhcC--CCCCeEEEEeCCCC-cHHHHHH
Q 022409 168 QFLSKVEEKL--PKDTDLIVACQKGL-RSLAACE 198 (297)
Q Consensus 168 ~f~~~~~~~l--~kd~~IVvyC~~G~-RS~~aa~ 198 (297)
+|++.+.... +.+.||+|+|..|. ||...+.
T Consensus 152 ~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a 185 (231)
T cd00047 152 DLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIA 185 (231)
T ss_pred HHHHHHHHHhccCCCCCeEEECCCCCCccchHHH
Confidence 5555555332 24679999998664 8766443
No 121
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=33.96 E-value=50 Score=27.06 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.6
Q ss_pred eEEEEeCCC-CcHHHHHHHHHHcCCC-CEEEccccHHHH
Q 022409 182 DLIVACQKG-LRSLAACELLYNAGYR-NLFWVQGGLEAA 218 (297)
Q Consensus 182 ~IVvyC~~G-~RS~~aa~~L~~~Gy~-nV~~L~GG~~aw 218 (297)
+|+|.|.+. .||..|..+|++..-+ ++.....|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 689999855 4999999999886433 576777787554
No 122
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=33.92 E-value=38 Score=29.30 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCCCEEEcc----ccHHHHHhCCCCccCCCCCcccccCcccCcccchhhhcccc
Q 022409 195 AACELLYNAGYRNLFWVQ----GGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYPF 253 (297)
Q Consensus 195 ~aa~~L~~~Gy~nV~~L~----GG~~aw~~~~lp~~~~~~~~~~~~~G~t~~~gkT~~l~~l~ 253 (297)
......+++||+ |+.+. -|+...++. ..+ +..++.|.| |+||+-+++.|.
T Consensus 3 ~~~~~y~~~gy~-v~~~S~~~~~g~~~l~~~------l~~-k~~vl~G~S-GvGKSSLiN~L~ 56 (161)
T PF03193_consen 3 ELLEQYEKLGYP-VFFISAKTGEGIEELKEL------LKG-KTSVLLGQS-GVGKSSLINALL 56 (161)
T ss_dssp HHHHHHHHTTSE-EEE-BTTTTTTHHHHHHH------HTT-SEEEEECST-TSSHHHHHHHHH
T ss_pred HHHHHHHHcCCc-EEEEeCCCCcCHHHHHHH------hcC-CEEEEECCC-CCCHHHHHHHHH
Confidence 345677889996 87664 355555543 223 677889999 599999999883
No 123
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=33.75 E-value=39 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=26.9
Q ss_pred CeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHHH
Q 022409 181 TDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 181 ~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~aw 218 (297)
++|+|.|.+.. ||..|..+|++..- ++.....|..+|
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~ 40 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGL 40 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCC
Confidence 47999998554 99999999988652 355566676554
No 124
>PRK04182 cytidylate kinase; Provisional
Probab=32.78 E-value=18 Score=30.29 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=21.2
Q ss_pred cccCcccCcccchhhhcccchhcCCC
Q 022409 234 AGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 234 ~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
.++.|.+ |.|||.+-+.||++.|||
T Consensus 3 I~i~G~~-GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 3 ITISGPP-GSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 5677888 599999999997777996
No 125
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=32.68 E-value=58 Score=25.99 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=19.6
Q ss_pred CeEEEEeCCCCcHHHHHHHH----HHcCCC
Q 022409 181 TDLIVACQKGLRSLAACELL----YNAGYR 206 (297)
Q Consensus 181 ~~IVvyC~~G~RS~~aa~~L----~~~Gy~ 206 (297)
++|++.|.+|+-|..++.-+ ++.|++
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 47999999999888777444 446764
No 126
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=31.99 E-value=70 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=29.0
Q ss_pred CeEEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHHH
Q 022409 181 TDLIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLEA 217 (297)
Q Consensus 181 ~~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~a 217 (297)
.+|+|.|.+.. ||..|-.++++..=.++.....|..+
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~ 40 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGG 40 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCC
Confidence 47999998555 99999999998644678888888644
No 127
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=31.69 E-value=1.6e+02 Score=31.57 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=56.9
Q ss_pred cccCHHHHHHHhcC----CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 92 KVLTPREAGYAVQL----SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 92 ~~Is~eel~~~l~~----~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
..++.+++.++++. +=-+||.|++..|.+..---|+.-|-+.+ +.+..+..+.
T Consensus 142 ~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINn-----------------------RdL~tf~vd~ 198 (695)
T PRK13802 142 AALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINA-----------------------RNLKDLKVDV 198 (695)
T ss_pred hhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeC-----------------------CCCccceeCH
Confidence 33455555555431 22479999999999764444443222211 1122223334
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCE
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNL 208 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV 208 (297)
+-..++...+|+ .+++++.+|..+..-...|...|++-|
T Consensus 199 ~~t~~L~~~ip~--~~~~VsESGI~~~~d~~~l~~~G~dav 237 (695)
T PRK13802 199 NKYNELAADLPD--DVIKVAESGVFGAVEVEDYARAGADAV 237 (695)
T ss_pred HHHHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHCCCCEE
Confidence 445555656764 567889999999999999999999733
No 128
>PRK13946 shikimate kinase; Provisional
Probab=31.42 E-value=21 Score=30.75 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=23.8
Q ss_pred CCcccccCcccCcccchhhhcccchhcCCC
Q 022409 230 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 230 ~~~~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
..+..++.|.. |.|||.+-+.||+..|+|
T Consensus 9 ~~~~I~l~G~~-GsGKsti~~~LA~~Lg~~ 37 (184)
T PRK13946 9 GKRTVVLVGLM-GAGKSTVGRRLATMLGLP 37 (184)
T ss_pred CCCeEEEECCC-CCCHHHHHHHHHHHcCCC
Confidence 34567788887 599999999997777997
No 129
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.40 E-value=97 Score=27.32 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=29.7
Q ss_pred ccHHHHHHHHhcCCCCCeEEEEeC----CC-------Cc-------HHHHHHHHHHcCCCCEEEccc
Q 022409 165 YNKQFLSKVEEKLPKDTDLIVACQ----KG-------LR-------SLAACELLYNAGYRNLFWVQG 213 (297)
Q Consensus 165 ~~~~f~~~~~~~l~kd~~IVvyC~----~G-------~R-------S~~aa~~L~~~Gy~nV~~L~G 213 (297)
....|++.+++.. +++|||+.-. .+ .+ -..+...|++.|++|+|.++|
T Consensus 79 ~~~~fv~~iR~~h-P~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g 144 (178)
T PF14606_consen 79 RLDGFVKTIREAH-PDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDG 144 (178)
T ss_dssp HHHHHHHHHHTT--SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-H
T ss_pred HHHHHHHHHHHhC-CCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCc
Confidence 4578999999665 5789988761 11 11 123556677789999999987
No 130
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.29 E-value=81 Score=26.93 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCCCeEEEEeC--CCC--cHHHHHHHHHHcCCCCEEEccccHH
Q 022409 177 LPKDTDLIVACQ--KGL--RSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 177 l~kd~~IVvyC~--~G~--RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
+..+..+|..|. ++. -+..+.+.|++.|..+++.+-||..
T Consensus 60 ~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvi 103 (143)
T COG2185 60 VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVI 103 (143)
T ss_pred HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCcc
Confidence 456778999996 443 4677889999999999998888853
No 131
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=31.28 E-value=69 Score=30.23 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCC-CEEEccccHH
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR-NLFWVQGGLE 216 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~-nV~~L~GG~~ 216 (297)
.+.++.....++.++++||+.-.++..++..|++.+.. ++..+-|++.
T Consensus 211 ~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~ 259 (358)
T TIGR01587 211 SLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFT 259 (358)
T ss_pred HHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCC
Confidence 34444434456679999999888899999999998874 5888889863
No 132
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=30.89 E-value=43 Score=29.20 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=20.5
Q ss_pred hcCCCCCeEEEEeCCCC-cHHHHHHHH
Q 022409 175 EKLPKDTDLIVACQKGL-RSLAACELL 200 (297)
Q Consensus 175 ~~l~kd~~IVvyC~~G~-RS~~aa~~L 200 (297)
...|..+|++++|+-|. ||..++...
T Consensus 88 ~~wp~~apllIHC~aGISRStA~A~i~ 114 (172)
T COG5350 88 DEWPRFAPLLIHCYAGISRSTAAALIA 114 (172)
T ss_pred hcCccccceeeeeccccccchHHHHHH
Confidence 35678889999999776 888777663
No 133
>PRK08349 hypothetical protein; Validated
Probab=30.33 E-value=64 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.6
Q ss_pred eEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 182 DLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
++|+.+.||..|..++++|.+.||+ |.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~-v~ 28 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVE-VY 28 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCe-EE
Confidence 5678889999999999999999994 75
No 134
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=29.93 E-value=89 Score=27.36 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEE
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFW 210 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~ 210 (297)
.|.+.+...+..+.+|.+...||..|..++..+.+....++..
T Consensus 5 ~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~ 47 (255)
T PF00733_consen 5 LLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKT 47 (255)
T ss_dssp HHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeE
Confidence 3455566667788899999999999999999999933334443
No 135
>PTZ00110 helicase; Provisional
Probab=29.34 E-value=87 Score=32.09 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
.+.++||||+.-..+..++..|+..|+. +..+.|+..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~~ 412 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDKK 412 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCCc
Confidence 5678999999888999999999999995 778888754
No 136
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=29.30 E-value=87 Score=26.33 Aligned_cols=28 Identities=43% Similarity=0.603 Sum_probs=17.8
Q ss_pred cHHHHHHHHhcCCCCCeEEEEeCCCC-cHH
Q 022409 166 NKQFLSKVEEKLPKDTDLIVACQKGL-RSL 194 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC~~G~-RS~ 194 (297)
..+|++-+. .++++..++|.|..|. |.-
T Consensus 111 iD~fi~~v~-~~p~~~~l~fhC~~G~GRTT 139 (149)
T PF14566_consen 111 IDAFINFVK-SLPKDTWLHFHCQAGRGRTT 139 (149)
T ss_dssp HHHHHHHHH-TS-TT-EEEEE-SSSSHHHH
T ss_pred HHHHHHHHH-hCCCCCeEEEECCCCCCHHH
Confidence 356666666 4588999999999776 543
No 137
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=28.84 E-value=67 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCCeEEEEeCCCC--cHHHHHHHHHHcCCC
Q 022409 178 PKDTDLIVACQKGL--RSLAACELLYNAGYR 206 (297)
Q Consensus 178 ~kd~~IVvyC~~G~--RS~~aa~~L~~~Gy~ 206 (297)
.+++++.++|.|.+ .+..|+..|++.|++
T Consensus 7 ~~g~di~iia~G~~~~~al~A~~~L~~~Gi~ 37 (124)
T PF02780_consen 7 REGADITIIAYGSMVEEALEAAEELEEEGIK 37 (124)
T ss_dssp ESSSSEEEEEETTHHHHHHHHHHHHHHTTCE
T ss_pred eCCCCEEEEeehHHHHHHHHHHHHHHHcCCc
Confidence 35678888888776 788999999999974
No 138
>PRK00131 aroK shikimate kinase; Reviewed
Probab=28.65 E-value=26 Score=29.00 Aligned_cols=28 Identities=11% Similarity=-0.115 Sum_probs=22.9
Q ss_pred CcccccCcccCcccchhhhcccchhcCCC
Q 022409 231 LKFAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 231 ~~~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
-+...+.|.+ |.|||.+-+.|+++.|++
T Consensus 4 ~~~i~l~G~~-GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 4 GPNIVLIGFM-GAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCeEEEEcCC-CCCHHHHHHHHHHHhCCC
Confidence 3466788888 599999999997777986
No 139
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=28.43 E-value=2.9e+02 Score=26.92 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=52.3
Q ss_pred ccCHHHHHHHhc----CCCcEEEEeCChhhhccccc-CCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 93 VLTPREAGYAVQ----LSSKTLLDVRPSTERKKAWI-KGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 93 ~Is~eel~~~l~----~~~~vlIDVRs~~Ef~~ghI-pGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
.++.+++.++++ .+=.+||.|.+..|.+..-= .|+--|-+.+ +.+..+....
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINN-----------------------RdL~Tf~vDl 269 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINN-----------------------RSLETFEVDI 269 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC-----------------------CCCCcceECH
Confidence 345555555443 12348999999999975432 2442222211 1122222223
Q ss_pred HHHHHHHh-----cCCCCCeEEEEeCCCCcHHHHHHHHHHcCCC
Q 022409 168 QFLSKVEE-----KLPKDTDLIVACQKGLRSLAACELLYNAGYR 206 (297)
Q Consensus 168 ~f~~~~~~-----~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~ 206 (297)
+-..++.. .+++ +.+++++.+|..+..-...|...|++
T Consensus 270 ~~t~~L~~~~~~~~i~~-~~~~~VsESGI~t~~Dv~~l~~~Gad 312 (338)
T PLN02460 270 SNTKKLLEGERGEQIRE-KGIIVVGESGLFTPDDVAYVQNAGVK 312 (338)
T ss_pred HHHHHHhhhccccccCC-CCeEEEECCCCCCHHHHHHHHHCCCC
Confidence 33333333 3422 35788899999999999999999996
No 140
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=28.36 E-value=2.4e+02 Score=26.23 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=54.2
Q ss_pred cccCHHHHHHHhcC----CCcEEEEeCChhhhcccccCCeEecCCCCCcccccCCCCCccccccccCCccCCCCCccccH
Q 022409 92 KVLTPREAGYAVQL----SSKTLLDVRPSTERKKAWIKGSIWIPIFDIDDTFDAGSLPQKVTNFVMGGWWSGVPTLSYNK 167 (297)
Q Consensus 92 ~~Is~eel~~~l~~----~~~vlIDVRs~~Ef~~ghIpGAinIPl~~~~e~~~~gtl~k~~~~~~~~~~w~G~~~~~~~~ 167 (297)
..++.+++.++++. +=-+||.|++..|.+..---|+--|-+.+ +.+..+.-+.
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn-----------------------RdL~t~~vd~ 189 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT-----------------------RDLDTFQIHQ 189 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC-----------------------CCCccceECH
Confidence 44556666555432 22479999999999865544553333221 1222233344
Q ss_pred HHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCC
Q 022409 168 QFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR 206 (297)
Q Consensus 168 ~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~ 206 (297)
+-..++...+|+ .+++++.+|..+..-+..|+.. ++
T Consensus 190 ~~~~~L~~~ip~--~~~~IsESGI~t~~d~~~l~~~-~d 225 (247)
T PRK13957 190 NLVEEVAAFLPP--NIVKVGESGIESRSDLDKFRKL-VD 225 (247)
T ss_pred HHHHHHHhhCCC--CcEEEEcCCCCCHHHHHHHHHh-CC
Confidence 445556666764 4577789999988877778776 76
No 141
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=28.31 E-value=69 Score=33.69 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=40.8
Q ss_pred ccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 165 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 165 ~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
..+.+++.+......+..++|+|.+-.++..++..|...|++ +..+.|+..
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~-~~~~h~~~~ 481 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK-VRYLHSDID 481 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee-EEEEECCCC
Confidence 345677777665667788999999888999999999999995 877777654
No 142
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=28.30 E-value=93 Score=26.67 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHHhcCCCCCeEEEEeCCCC--cHHHHHHHHHH---cCCCCEEEccccHH
Q 022409 172 KVEEKLPKDTDLIVACQKGL--RSLAACELLYN---AGYRNLFWVQGGLE 216 (297)
Q Consensus 172 ~~~~~l~kd~~IVvyC~~G~--RS~~aa~~L~~---~Gy~nV~~L~GG~~ 216 (297)
.+...++++..+|+.+..|. .|...|..|.+ .|..++..+-||-.
T Consensus 59 ~il~~i~~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~ 108 (155)
T PF02590_consen 59 RILKKIPPNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGAD 108 (155)
T ss_dssp HHHCTSHTTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTT
T ss_pred HHHhhccCCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 34445677778888888886 78889988887 68878888888743
No 143
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=28.30 E-value=1.3e+02 Score=23.21 Aligned_cols=76 Identities=12% Similarity=-0.006 Sum_probs=40.3
Q ss_pred CCCeEEEEeCC------CCcHHHHHHHHHHcCCCC-EEEccccHHHHHhCCCCccCCCCCcccccCcccCcccchhhhcc
Q 022409 179 KDTDLIVACQK------GLRSLAACELLYNAGYRN-LFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCY 251 (297)
Q Consensus 179 kd~~IVvyC~~------G~RS~~aa~~L~~~Gy~n-V~~L~GG~~aw~~~~lp~~~~~~~~~~~~~G~t~~~gkT~~l~~ 251 (297)
.+.+||||..+ --.|..+-.+|.+.|++- .+.+... .+.+++-....+...+....++|. .+|--|.+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~--~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE--FVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE--EEeChHHHHH
Confidence 45699999753 236889999999999751 2233222 222222111122223334455565 3555555655
Q ss_pred cchhcCC
Q 022409 252 PFLHISY 258 (297)
Q Consensus 252 l~~~~g~ 258 (297)
+ .+.|-
T Consensus 87 l-~~~g~ 92 (97)
T TIGR00365 87 M-YQSGE 92 (97)
T ss_pred H-HHCcC
Confidence 6 45554
No 144
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=28.25 E-value=63 Score=35.44 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
.++.+.+...++.||+|+|.+-..|..++..|.+.|++ ...|.+...+...
T Consensus 433 v~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~-h~vLnak~~q~Ea 483 (896)
T PRK13104 433 IIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIK-HQVLNAKFHEKEA 483 (896)
T ss_pred HHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEeecCCCChHHH
Confidence 33444444568899999999989999999999999996 7788888765544
No 145
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=28.18 E-value=73 Score=27.64 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=19.9
Q ss_pred HHHHHHHHhcC-CCCCeEEEEeCCCC-cHHHHH
Q 022409 167 KQFLSKVEEKL-PKDTDLIVACQKGL-RSLAAC 197 (297)
Q Consensus 167 ~~f~~~~~~~l-~kd~~IVvyC~~G~-RS~~aa 197 (297)
-+|++.+.... ..+.|+||+|..|. ||...+
T Consensus 156 ~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~ 188 (235)
T PF00102_consen 156 LDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFC 188 (235)
T ss_dssp HHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHH
T ss_pred hhhhhhccccccCCccceEeecccccccccccc
Confidence 35555555433 45679999999666 765533
No 146
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=27.76 E-value=59 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCCC-cHHHHHHHHHH-cCC
Q 022409 179 KDTDLIVACQKGL-RSLAACELLYN-AGY 205 (297)
Q Consensus 179 kd~~IVvyC~~G~-RS~~aa~~L~~-~Gy 205 (297)
.+.||+|+|..|. |...++..|++ .|.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W 118 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGW 118 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCC
Confidence 4569999999665 88888888876 354
No 147
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.76 E-value=24 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=26.1
Q ss_pred cccccCcccCcccchhhhcccchhcCCC-CcchhhHHHH
Q 022409 232 KFAGIGGLSEFLGYTSQLCYPFLHISYP-STSFSKMTYV 269 (297)
Q Consensus 232 ~~~~~~G~t~~~gkT~~l~~l~~~~g~~-~~~~~~~~~~ 269 (297)
++..++|.+ |.|||-.++.| +..||- ==-++..|+-
T Consensus 2 ~~vIiTGlS-GaGKs~Al~~l-ED~Gy~cvDNlP~~Ll~ 38 (284)
T PF03668_consen 2 ELVIITGLS-GAGKSTALRAL-EDLGYYCVDNLPPSLLP 38 (284)
T ss_pred eEEEEeCCC-cCCHHHHHHHH-HhcCeeEEcCCcHHHHH
Confidence 467889999 59999999999 777984 2223444443
No 148
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=27.55 E-value=68 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCC-CCCeEEEEeCCCC-cHHHHH
Q 022409 167 KQFLSKVEEKLP-KDTDLIVACQKGL-RSLAAC 197 (297)
Q Consensus 167 ~~f~~~~~~~l~-kd~~IVvyC~~G~-RS~~aa 197 (297)
-+|++.+..... .+.||||+|..|. ||...+
T Consensus 179 ~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~ 211 (258)
T smart00194 179 LDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFI 211 (258)
T ss_pred HHHHHHHHHhhccCCCCEEEEeCCCCCccchhh
Confidence 355555553322 2679999998554 776533
No 149
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=27.52 E-value=92 Score=30.58 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=25.7
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
.+.++++.+.||..|..++++|.+.|++ |.
T Consensus 175 ~~gkvvvllSGGiDS~vaa~l~~k~G~~-v~ 204 (394)
T PRK01565 175 TSGKALLLLSGGIDSPVAGYLAMKRGVE-IE 204 (394)
T ss_pred CCCCEEEEECCChhHHHHHHHHHHCCCE-EE
Confidence 3468899999999999999999999984 64
No 150
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=27.39 E-value=27 Score=32.94 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCcccccCcccCcccchhhhcccchhcCCC
Q 022409 230 PLKFAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 230 ~~~~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
+.++.+++|.+ |.|||.+++.+ +..||.
T Consensus 5 ~~~~i~i~G~~-GsGKtt~~~~l-~~~g~~ 32 (288)
T PRK05416 5 PMRLVIVTGLS-GAGKSVALRAL-EDLGYY 32 (288)
T ss_pred CceEEEEECCC-CCcHHHHHHHH-HHcCCe
Confidence 45678999999 59999999999 677886
No 151
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=27.33 E-value=86 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCcHHHHHHHHHHcCCCCEEEcc
Q 022409 181 TDLIVACQKGLRSLAACELLYNAGYRNLFWVQ 212 (297)
Q Consensus 181 ~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~ 212 (297)
++.||.|.||+.|..++.++.+.||. |+-+.
T Consensus 3 ~kavvl~SGG~DStt~l~~a~~~~~e-v~als 33 (222)
T COG0603 3 KKAVVLLSGGLDSTTCLAWAKKEGYE-VHALT 33 (222)
T ss_pred ceEEEEccCChhHHHHHHHHHhcCCE-EEEEE
Confidence 46788899999999999999999984 87553
No 152
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=27.26 E-value=69 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.021 Sum_probs=21.7
Q ss_pred EEEEeCCCC-cHHHHHHHHHHcCCCCEEEccccHH
Q 022409 183 LIVACQKGL-RSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 183 IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
|+|.|.+.. ||..|..+++.+.=+++.....|..
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 467787444 7887777777753234656666653
No 153
>PRK14738 gmk guanylate kinase; Provisional
Probab=27.25 E-value=30 Score=30.47 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=23.4
Q ss_pred CCCCCcccccCcccCcccchhhhcccchhcCC
Q 022409 227 GPQPLKFAGIGGLSEFLGYTSQLCYPFLHISY 258 (297)
Q Consensus 227 ~~~~~~~~~~~G~t~~~gkT~~l~~l~~~~g~ 258 (297)
.+..-++.++.|.+ |+|||-+.+.| .+.++
T Consensus 9 ~~~~~~~ivi~Gps-G~GK~tl~~~L-~~~~~ 38 (206)
T PRK14738 9 KPAKPLLVVISGPS-GVGKDAVLARM-RERKL 38 (206)
T ss_pred CCCCCeEEEEECcC-CCCHHHHHHHH-HhcCC
Confidence 34456778889999 59999999999 55555
No 154
>PLN02347 GMP synthetase
Probab=26.95 E-value=1.4e+02 Score=30.85 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred ccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHH-cCCCCEE--EccccHHH
Q 022409 165 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLF--WVQGGLEA 217 (297)
Q Consensus 165 ~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~-~Gy~nV~--~L~GG~~a 217 (297)
...++++++.+.+.++.++++...||..|..+|.++.+ .|. ++. .++.|+..
T Consensus 214 ~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~-~v~av~id~g~~~ 268 (536)
T PLN02347 214 VLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGD-RLHCVFVDNGLLR 268 (536)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCC-cEEEEEEeCCCCC
Confidence 44566677776676677899998999999999999999 685 565 66666543
No 155
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=26.88 E-value=77 Score=23.90 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=21.9
Q ss_pred eEEEEeCCCCcHHHH-H----HHHHHcCCCCEEEccccHHHH
Q 022409 182 DLIVACQKGLRSLAA-C----ELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 182 ~IVvyC~~G~RS~~a-a----~~L~~~Gy~nV~~L~GG~~aw 218 (297)
+|+++|.+|+-+..+ + ..+.+.|+. +..-..++...
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~-~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLE-IPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCc-eEEEEcchhhC
Confidence 689999999865443 4 445556764 43444455443
No 156
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.71 E-value=1.5e+02 Score=28.55 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=43.0
Q ss_pred cHHHHHHHHhcCCCCCeEEEEe-CCCC---cHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccCCCCCcccccCccc
Q 022409 166 NKQFLSKVEEKLPKDTDLIVAC-QKGL---RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLS 240 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC-~~G~---RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~~~~~~~~~~~G~t 240 (297)
...|+++......-.+|-++.| ..+. .-......+.++|-++||.++-.+.+-...++++..+...-...+||-|
T Consensus 78 l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~Gt 156 (326)
T PF06723_consen 78 LRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGT 156 (326)
T ss_dssp HHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-
T ss_pred HHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCe
Confidence 3455555553212234555555 5554 2345666778899999999999999999999999766665666665443
No 157
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=26.51 E-value=1.4e+02 Score=23.26 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCCeEEEEeCCCC-cHHHHHHHHHHcCCC-CEEEcc
Q 022409 179 KDTDLIVACQKGL-RSLAACELLYNAGYR-NLFWVQ 212 (297)
Q Consensus 179 kd~~IVvyC~~G~-RS~~aa~~L~~~Gy~-nV~~L~ 212 (297)
+..+|++|...+- .|..+-.+|.+.|++ .++.++
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 3468999999776 788999999999874 244554
No 158
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=26.37 E-value=1.2e+02 Score=29.62 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
...+++|||+.-..+..++..|...|+. +..+.|++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~-~~~l~g~~~ 280 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGIN-CCYLEGEMV 280 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 3468999999988999999999999995 889999863
No 159
>PRK10824 glutaredoxin-4; Provisional
Probab=26.24 E-value=1.7e+02 Score=23.82 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=42.8
Q ss_pred CCCeEEEEeCC-----CC-cHHHHHHHHHHcCCCC-EEEcccc--HHHHHhCCCCccCCCCCcccccCcccCcccchhhh
Q 022409 179 KDTDLIVACQK-----GL-RSLAACELLYNAGYRN-LFWVQGG--LEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQL 249 (297)
Q Consensus 179 kd~~IVvyC~~-----G~-RS~~aa~~L~~~Gy~n-V~~L~GG--~~aw~~~~lp~~~~~~~~~~~~~G~t~~~gkT~~l 249 (297)
++.+||||-.+ .. .|..|..+|...|.+- ++.+... +..+..+ +.+-..+.-.-++|. ++|=-|.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~---~sg~~TVPQIFI~G~--~IGG~ddl 87 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPK---YANWPTFPQLWVDGE--LVGGCDIV 87 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHH---HhCCCCCCeEEECCE--EEcChHHH
Confidence 34588888664 22 7889999999999542 4444432 2222211 122223333445666 57777777
Q ss_pred cccchhcCC
Q 022409 250 CYPFLHISY 258 (297)
Q Consensus 250 ~~l~~~~g~ 258 (297)
.++ .+.|-
T Consensus 88 ~~l-~~~G~ 95 (115)
T PRK10824 88 IEM-YQRGE 95 (115)
T ss_pred HHH-HHCCC
Confidence 777 66676
No 160
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=26.15 E-value=84 Score=33.23 Aligned_cols=51 Identities=10% Similarity=0.283 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 165 YNKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 165 ~~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
..+.+++.+.....++..++|+|.+-.++..++..|.+.|++ +..+.|++.
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~-~~~lh~~~~ 477 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK-VRYLHSEID 477 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc-eeeeeCCCC
Confidence 446777777766667789999999888999999999999995 777767654
No 161
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=26.12 E-value=84 Score=28.69 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=25.5
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 177 LPKDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 177 l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
+.+..+++|...||..|..++.++.+.|++ |.
T Consensus 9 l~~~~~vlVa~SGGvDSs~ll~la~~~g~~-v~ 40 (252)
T TIGR00268 9 LKEFKKVLIAYSGGVDSSLLAAVCSDAGTE-VL 40 (252)
T ss_pred HHhcCCEEEEecCcHHHHHHHHHHHHhCCC-EE
Confidence 334457888889999999999999998874 54
No 162
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=25.95 E-value=1.5e+02 Score=22.79 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccc
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG 213 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~G 213 (297)
+-+|++-|-.|.-+..+..+|+.+|.+ +..+..
T Consensus 21 ~~kivvD~~~G~~~~~~~~ll~~lg~~-~~~~n~ 53 (104)
T PF02879_consen 21 GLKIVVDCMNGAGSDILPRLLERLGCD-VIELNC 53 (104)
T ss_dssp TCEEEEE-TTSTTHHHHHHHHHHTTCE-EEEESS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCc-EEEEec
Confidence 348999999999999999999999995 555544
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.50 E-value=23 Score=27.67 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=19.8
Q ss_pred ccCcccCcccchhhhcccchhcCCC
Q 022409 235 GIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 235 ~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
.++|.. |+|||-+.+.+|+..|++
T Consensus 2 ll~G~~-G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 2 LLHGPP-GTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEESST-TSSHHHHHHHHHHHTTSE
T ss_pred EEECcC-CCCeeHHHHHHHhhcccc
Confidence 357887 599999999998887875
No 164
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.45 E-value=2.5e+02 Score=22.74 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=42.5
Q ss_pred CCCeEEEEeCCC------CcHHHHHHHHHHcC---CCCEEEccccHHHHHhCCCCc-cCCCCCcccccCcccCcccchhh
Q 022409 179 KDTDLIVACQKG------LRSLAACELLYNAG---YRNLFWVQGGLEAAEEEDLVR-EGPQPLKFAGIGGLSEFLGYTSQ 248 (297)
Q Consensus 179 kd~~IVvyC~~G------~RS~~aa~~L~~~G---y~nV~~L~GG~~aw~~~~lp~-~~~~~~~~~~~~G~t~~~gkT~~ 248 (297)
++.||++|-.|- ..|..+...|..+| |.-|=+|+. ..-|+ +++. .+=+.+.-.-+.|- ++|=-||
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~-~lk~~s~WPT~PQLyi~GE--fvGG~DI 87 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQ-GLKEYSNWPTFPQLYVNGE--FVGGCDI 87 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHh-ccHhhcCCCCCceeeECCE--EeccHHH
Confidence 456888887533 26889999999999 332334443 22222 2222 11111122223343 7888999
Q ss_pred hcccchhcCC
Q 022409 249 LCYPFLHISY 258 (297)
Q Consensus 249 l~~l~~~~g~ 258 (297)
++++ -+.|-
T Consensus 88 v~Em-~q~GE 96 (105)
T COG0278 88 VREM-YQSGE 96 (105)
T ss_pred HHHH-HHcch
Confidence 9999 66665
No 165
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=25.30 E-value=33 Score=30.64 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=26.9
Q ss_pred cccccCcccCcccchhhhcccchhcCCC--CcchhhH
Q 022409 232 KFAGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 266 (297)
Q Consensus 232 ~~~~~~G~t~~~gkT~~l~~l~~~~g~~--~~~~~~~ 266 (297)
...+++|.. |+|||.+.+.+ ++.||| .+--.+|
T Consensus 3 ~iIglTG~i-gsGKStva~~~-~~~G~~vidaD~v~r 37 (201)
T COG0237 3 LIIGLTGGI-GSGKSTVAKIL-AELGFPVIDADDVAR 37 (201)
T ss_pred eEEEEecCC-CCCHHHHHHHH-HHcCCeEEEccHHHH
Confidence 356788888 59999999999 668998 7777777
No 166
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.12 E-value=1e+02 Score=24.26 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.2
Q ss_pred CeEEEEeCCCCcHHHH-----HHHHHHcCCC
Q 022409 181 TDLIVACQKGLRSLAA-----CELLYNAGYR 206 (297)
Q Consensus 181 ~~IVvyC~~G~RS~~a-----a~~L~~~Gy~ 206 (297)
.+|++.|..|+-|..+ -+.|++.|++
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCC
Confidence 4799999999876554 3568899995
No 167
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=25.00 E-value=2.8e+02 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCE
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNL 208 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV 208 (297)
.+...++...+++ .++++|-+|..+..-+..+..+|++-|
T Consensus 198 ~~~~~~l~~~~p~--~~~vIaegGI~t~ed~~~~~~~Gad~v 237 (260)
T PRK00278 198 LETTERLAPLIPS--DRLVVSESGIFTPEDLKRLAKAGADAV 237 (260)
T ss_pred HHHHHHHHHhCCC--CCEEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 4445555555543 346778889988888888889999633
No 168
>PRK04040 adenylate kinase; Provisional
Probab=24.80 E-value=36 Score=29.80 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=25.3
Q ss_pred cccccCcccCcccchhhhcccchhc--CCCCcchhhHHH
Q 022409 232 KFAGIGGLSEFLGYTSQLCYPFLHI--SYPSTSFSKMTY 268 (297)
Q Consensus 232 ~~~~~~G~t~~~gkT~~l~~l~~~~--g~~~~~~~~~~~ 268 (297)
++.+++|.. |+|||-+.+.++++. +| ..+.++=++
T Consensus 3 ~~i~v~G~p-G~GKtt~~~~l~~~l~~~~-~~~~~g~~~ 39 (188)
T PRK04040 3 KVVVVTGVP-GVGKTTVLNKALEKLKEDY-KIVNFGDVM 39 (188)
T ss_pred eEEEEEeCC-CCCHHHHHHHHHHHhccCC-eEEecchHH
Confidence 467888988 599999999996665 77 444444443
No 169
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=24.14 E-value=66 Score=31.43 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 182 DLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
+|+|-=.||..|..+|.+|++.||+ |.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~-V~ 28 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYD-VI 28 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-E-EE
T ss_pred eEEEEccCCHHHHHHHHHHHhhccc-ce
Confidence 5777777899999999999999995 64
No 170
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.01 E-value=1.3e+02 Score=22.76 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCCeEEEEeCC-----C-CcHHHHHHHHHHcCCC
Q 022409 179 KDTDLIVACQK-----G-LRSLAACELLYNAGYR 206 (297)
Q Consensus 179 kd~~IVvyC~~-----G-~RS~~aa~~L~~~Gy~ 206 (297)
++.+||||..+ + -.|..+..+|...|.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~ 39 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD 39 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 35689999763 2 3788999999999874
No 171
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=23.72 E-value=1.1e+02 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEE--Ecccc
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLF--WVQGG 214 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~--~L~GG 214 (297)
+.++++.-.||..|..|+++|.+.|++ |. .+..|
T Consensus 180 ~gkvlvllSGGiDSpVAa~ll~krG~~-V~~v~f~~g 215 (381)
T PRK08384 180 QGKVVALLSGGIDSPVAAFLMMKRGVE-VIPVHIYMG 215 (381)
T ss_pred CCcEEEEEeCChHHHHHHHHHHHcCCe-EEEEEEEeC
Confidence 347777778999999999999999995 54 44444
No 172
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=23.69 E-value=1.1e+02 Score=33.30 Aligned_cols=41 Identities=20% Similarity=0.049 Sum_probs=35.1
Q ss_pred CCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHH
Q 022409 177 LPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 177 l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw 218 (297)
..++.|++|+|++-..|..++..|.+.|++ ...|.|....-
T Consensus 437 ~~~g~pvLI~t~si~~se~ls~~L~~~gi~-~~~Lna~~~~~ 477 (796)
T PRK12906 437 HAKGQPVLVGTVAIESSERLSHLLDEAGIP-HAVLNAKNHAK 477 (796)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHCCCC-eeEecCCcHHH
Confidence 357789999999988999999999999995 88888886543
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=23.63 E-value=36 Score=25.83 Aligned_cols=25 Identities=16% Similarity=-0.157 Sum_probs=18.8
Q ss_pred ccccCcccCcccchhhhcccchhcCC
Q 022409 233 FAGIGGLSEFLGYTSQLCYPFLHISY 258 (297)
Q Consensus 233 ~~~~~G~t~~~gkT~~l~~l~~~~g~ 258 (297)
...+.|.+ |+|||-+++.++...+.
T Consensus 4 ~~~l~G~~-G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 4 VILIVGPP-GSGKTTLARALARELGP 28 (148)
T ss_pred EEEEECCC-CCcHHHHHHHHHhccCC
Confidence 34567777 59999999998665554
No 174
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=23.58 E-value=1.1e+02 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
+..+++|+|++-..|...+..|.+.|++ +..|.|...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~-~~~Lhg~~~ 508 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLP-HQVLNAKQD 508 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEeeCCcH
Confidence 4578999999888999999999999995 888888754
No 175
>PHA03050 glutaredoxin; Provisional
Probab=23.54 E-value=1.9e+02 Score=22.96 Aligned_cols=27 Identities=7% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCCeEEEEeCCCC-cHHHHHHHHHHcCC
Q 022409 179 KDTDLIVACQKGL-RSLAACELLYNAGY 205 (297)
Q Consensus 179 kd~~IVvyC~~G~-RS~~aa~~L~~~Gy 205 (297)
++.+|++|+..+- .|..|-.+|.+.|.
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i 38 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSF 38 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCC
Confidence 3458999999776 78889999999886
No 176
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=23.33 E-value=1.2e+02 Score=32.76 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 171 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
+.+.+...++.|++|+|.+-..|..++..|.+.|++ ...|.|.-.
T Consensus 396 ~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-~~~Lna~q~ 440 (745)
T TIGR00963 396 DEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-HNVLNAKNH 440 (745)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC-eEEeeCChH
Confidence 334333467889999999888999999999999996 777877733
No 177
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=23.03 E-value=1.2e+02 Score=32.95 Aligned_cols=39 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHH
Q 022409 178 PKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217 (297)
Q Consensus 178 ~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~a 217 (297)
.+..|++|+|++-..|...+..|.+.|++ +..|.|....
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~-~~~L~~~~~~ 464 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIP-HNLLNAKNAA 464 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCC-EEEecCCccH
Confidence 45789999999988999999999999995 8888887544
No 178
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=22.90 E-value=70 Score=25.75 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCc-EEEEeCC
Q 022409 96 PREAGYAVQLSSK-TLLDVRP 115 (297)
Q Consensus 96 ~eel~~~l~~~~~-vlIDVRs 115 (297)
.+++.+.+...++ +|||||.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~ 22 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL 22 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC
Confidence 5667776655554 8999995
No 179
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription]
Probab=22.65 E-value=88 Score=27.40 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCeEEEEeCC-CCcHHHHHHHHHHcCCCCEEEc
Q 022409 180 DTDLIVACQK-GLRSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 180 d~~IVvyC~~-G~RS~~aa~~L~~~Gy~nV~~L 211 (297)
+-++-+.|.+ ..||..+-..|.++||. |..+
T Consensus 6 nlk~~v~CAsNqNRSMetH~vL~~aGy~-V~Sf 37 (197)
T COG5211 6 NLKLAVTCASNQNRSMETHDVLAKAGYP-VKSF 37 (197)
T ss_pred CceEEeeeccCCCcchHHHHHHHHcCCc-cccc
Confidence 3478899984 45999999999999994 7654
No 180
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=22.63 E-value=1.3e+02 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=28.0
Q ss_pred cccHHHHHHHHhc--------CCCCCe-EEEEeCCCCcHHHHHHHHHHc
Q 022409 164 SYNKQFLSKVEEK--------LPKDTD-LIVACQKGLRSLAACELLYNA 203 (297)
Q Consensus 164 ~~~~~f~~~~~~~--------l~kd~~-IVvyC~~G~RS~~aa~~L~~~ 203 (297)
...+.|++++... ..++.| ++|.|.++.|+.-+.+.|+..
T Consensus 101 ~nL~~fLk~~~~~~~~l~~~~~~~gsP~~lvvs~SalRa~dl~R~l~~~ 149 (252)
T PF14617_consen 101 DNLPSFLKQFSPKKKKLSKKPKEKGSPHVLVVSSSALRAADLIRALRSF 149 (252)
T ss_pred chHHHHHHHhccchhhhhhcccCCCCCEEEEEcchHHHHHHHHHHHHhh
Confidence 3557777655421 123344 888999999999999999875
No 181
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.54 E-value=1.4e+02 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
.+.++++...||..|..++++|.+.|++ |.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG~~-V~ 200 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRGCR-VV 200 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcCCe-EE
Confidence 3458899999999999999999999994 64
No 182
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=22.43 E-value=1.2e+02 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 179 KDTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 179 kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
++++|+|...||..|..++.+|++.||+ |.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~G~e-V~ 33 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQGYE-IV 33 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHcCCc-EE
Confidence 4468999999999999999999999995 65
No 183
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=22.18 E-value=1.5e+02 Score=26.59 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCC
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYR 206 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~ 206 (297)
+.+.+...+..+.+|.+...||..|..++..+.+.+..
T Consensus 4 l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~~ 41 (269)
T cd01991 4 LEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPE 41 (269)
T ss_pred HHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhCC
Confidence 33445545667778888888898888888888877653
No 184
>PRK13947 shikimate kinase; Provisional
Probab=22.14 E-value=38 Score=28.29 Aligned_cols=26 Identities=15% Similarity=-0.092 Sum_probs=21.7
Q ss_pred ccccCcccCcccchhhhcccchhcCCC
Q 022409 233 FAGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 233 ~~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
...+.|.. |+|||.+=+.||++.|||
T Consensus 3 ~I~l~G~~-GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFM-GTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHHhCCC
Confidence 35678887 599999999997777996
No 185
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.10 E-value=1.9e+02 Score=29.08 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHH
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEA 217 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~a 217 (297)
+.++||||+.-..+..++-+|+..||. ...|.|-+..
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 478999999999999999999999994 7777776543
No 186
>PRK00919 GMP synthase subunit B; Validated
Probab=22.05 E-value=1.7e+02 Score=27.97 Aligned_cols=47 Identities=28% Similarity=0.407 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHH-cCCCCEE--EccccH
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLF--WVQGGL 215 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~-~Gy~nV~--~L~GG~ 215 (297)
.+-++.+++.+.. .++++.+.||..|..++.++.+ .|++ +. .++.|.
T Consensus 9 ~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~lG~~-v~aV~vD~G~ 58 (307)
T PRK00919 9 EEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAIGDR-LTPVFVDTGL 58 (307)
T ss_pred HHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHhCCe-EEEEEEECCC
Confidence 3444555555644 6889889999999999999977 5873 54 556665
No 187
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=21.96 E-value=1.4e+02 Score=32.28 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHH
Q 022409 171 SKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAA 218 (297)
Q Consensus 171 ~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw 218 (297)
+.+.+...+..|++|+|.+-..+...+..|.+.|++ +..|.|....-
T Consensus 415 ~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~-~~~L~a~~~~~ 461 (762)
T TIGR03714 415 EDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIP-HNLLNAQNAAK 461 (762)
T ss_pred HHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCC-EEEecCCChHH
Confidence 333333356789999999888899999999999995 77888876654
No 188
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=21.75 E-value=97 Score=34.06 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHHHHHh
Q 022409 169 FLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLEAAEE 220 (297)
Q Consensus 169 f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~ 220 (297)
.++.+.+...++.||+|+|.+-..|...+..|.+.|+. ...|.+.......
T Consensus 438 ii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~-~~vLnak~~~~Ea 488 (908)
T PRK13107 438 IIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIP-HEVLNAKFHEREA 488 (908)
T ss_pred HHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCC-eEeccCcccHHHH
Confidence 33444433467899999999999999999999999995 7788887655443
No 189
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.48 E-value=1.8e+02 Score=27.10 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=41.1
Q ss_pred CeEEEEeCCCC--------cHHHHHHHHHHcCCCCEEEccccHHHHHhCCCCccCCCCCcccccCcccCcccchhhhccc
Q 022409 181 TDLIVACQKGL--------RSLAACELLYNAGYRNLFWVQGGLEAAEEEDLVREGPQPLKFAGIGGLSEFLGYTSQLCYP 252 (297)
Q Consensus 181 ~~IVvyC~~G~--------RS~~aa~~L~~~Gy~nV~~L~GG~~aw~~~~lp~~~~~~~~~~~~~G~t~~~gkT~~l~~l 252 (297)
.+|.|.|.|.. .+..++..|++.||+ +..++..-..+... +... .....+.+++|..|--|+ ++..+
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~-~~~~~~~~~~~~~~-l~~~-~~d~vf~~lhG~~ge~~~--i~~~l 78 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYD-AVGVDASGKELVAK-LLEL-KPDKCFVALHGEDGENGR--VSALL 78 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCE-EEEEcCCchhHHHH-hhcc-CCCEEEEeCCCCCCCChH--HHHHH
Confidence 47888887442 234577889999996 66554321222221 1111 123556688888753332 44444
Q ss_pred chhcCCC
Q 022409 253 FLHISYP 259 (297)
Q Consensus 253 ~~~~g~~ 259 (297)
+..|.|
T Consensus 79 -e~~gip 84 (296)
T PRK14569 79 -EMLEIK 84 (296)
T ss_pred -HHcCCC
Confidence 666876
No 190
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=21.06 E-value=1.8e+02 Score=27.69 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHH-cCCCCEE--EccccH
Q 022409 167 KQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYN-AGYRNLF--WVQGGL 215 (297)
Q Consensus 167 ~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~-~Gy~nV~--~L~GG~ 215 (297)
++.++.+++.+.+ .++++.+.||..|..++.++.+ .|+ ++. .++-|+
T Consensus 4 ~~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~G~-~v~av~vd~G~ 53 (311)
T TIGR00884 4 EEAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAIGD-RLTCVFVDHGL 53 (311)
T ss_pred HHHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHhCC-CEEEEEEeCCC
Confidence 3445566656643 6888889999999999999977 486 464 556665
No 191
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=1.3e+02 Score=29.58 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEE
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLF 209 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~ 209 (297)
..+|++--.||..|+.+|.+|.+.||+ |.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QGye-Vi 31 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQGYE-VI 31 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcCCe-EE
Confidence 457888878999999999999999995 75
No 192
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=20.86 E-value=3.1e+02 Score=26.15 Aligned_cols=103 Identities=16% Similarity=0.037 Sum_probs=57.5
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccc--cHH-----HHHh-------------CCCCccC--------CCCC
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQG--GLE-----AAEE-------------EDLVREG--------PQPL 231 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~G--G~~-----aw~~-------------~~lp~~~--------~~~~ 231 (297)
+-||++=-.+...+...+..|.+.|.+ ...+.| |-. .++. .+.+... ....
T Consensus 178 ~vPVivK~~g~g~s~~~a~~l~~~Gvd-~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~i 256 (326)
T cd02811 178 SVPVIVKEVGFGISRETAKRLADAGVK-AIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDL 256 (326)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHcCCC-EEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCC
Confidence 447775322222567888999999996 555554 210 0111 1111100 1134
Q ss_pred cccccCcccCcccchhhhcccchhcCCCCcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 022409 232 KFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTYVIIHAMDSLYVGNLRNWWNILEIIKD 294 (297)
Q Consensus 232 ~~~~~~G~t~~~gkT~~l~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (297)
.+..-||.. --.|+.+.+ ..|. .++..+|-++.-++- |...+...|-.+.++
T Consensus 257 pIiasGGIr---~~~dv~kal--~lGA-d~V~i~~~~L~~~~~-----g~~~~~~~i~~~~~e 308 (326)
T cd02811 257 PLIASGGIR---NGLDIAKAL--ALGA-DLVGMAGPFLKAALE-----GEEAVIETIEQIIEE 308 (326)
T ss_pred cEEEECCCC---CHHHHHHHH--HhCC-CEEEEcHHHHHHHhc-----CHHHHHHHHHHHHHH
Confidence 555666654 357999988 5687 889999976654422 666554444444333
No 193
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=20.77 E-value=1.1e+02 Score=29.85 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccH
Q 022409 180 DTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGGL 215 (297)
Q Consensus 180 d~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~ 215 (297)
...++|||++-.++..++..|...|++ +..+.|++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~-v~~lhg~~ 289 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHR-VGLLTGDV 289 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCc-EEEecCCC
Confidence 457999999888999999999999995 98888885
No 194
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.70 E-value=1.8e+02 Score=24.08 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=32.5
Q ss_pred cHHHHHHHHhcCCCCCeEEEEeC-CC-C--cHHHHHHHHHHcCCCCEEEcccc
Q 022409 166 NKQFLSKVEEKLPKDTDLIVACQ-KG-L--RSLAACELLYNAGYRNLFWVQGG 214 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC~-~G-~--RS~~aa~~L~~~Gy~nV~~L~GG 214 (297)
.++|++...+ .+.++|+.|. .+ . ....+...|++.|..++.++-||
T Consensus 42 ~e~~v~aa~e---~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 42 PEEIARQAVE---ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred HHHHHHHHHH---cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3567666653 4568999997 22 2 45667788889898778888887
No 195
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=1.3e+02 Score=26.61 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=24.7
Q ss_pred EEEeCCCCcHHHHHHHHHHcCCCCEEEc--c-ccHHHHHh
Q 022409 184 IVACQKGLRSLAACELLYNAGYRNLFWV--Q-GGLEAAEE 220 (297)
Q Consensus 184 VvyC~~G~RS~~aa~~L~~~Gy~nV~~L--~-GG~~aw~~ 220 (297)
.+.-.||..|..+|++|++.||+ |-.+ . |=...|.-
T Consensus 4 ~vLfSGGKDSSLaA~iL~klgye-v~LVTvnFGv~d~~k~ 42 (198)
T COG2117 4 YVLFSGGKDSSLAALILDKLGYE-VELVTVNFGVLDSWKY 42 (198)
T ss_pred EEEecCCCchhHHHHHHHHhCCC-cEEEEEEeccccchhh
Confidence 33446789999999999999995 5422 2 33455544
No 196
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=20.58 E-value=49 Score=33.97 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCcccccCcccCcccchhhhcccchhcCC
Q 022409 230 PLKFAGIGGLSEFLGYTSQLCYPFLHISY 258 (297)
Q Consensus 230 ~~~~~~~~G~t~~~gkT~~l~~l~~~~g~ 258 (297)
.-++..++|.+ |+|||-.++.||++.|+
T Consensus 44 ~~~iLlLtGP~-G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 44 PKRILLLTGPS-GCGKTTTVKVLAKELGF 71 (519)
T ss_pred CcceEEEECCC-CCCHHHHHHHHHHHhCC
Confidence 34588999999 59999999999888888
No 197
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=20.50 E-value=2.2e+02 Score=24.08 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred cHHHHHHHHhcCCCCCeEEEEeCCCCcHHHHHHHHHHcCCCCEEEcccc
Q 022409 166 NKQFLSKVEEKLPKDTDLIVACQKGLRSLAACELLYNAGYRNLFWVQGG 214 (297)
Q Consensus 166 ~~~f~~~~~~~l~kd~~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG 214 (297)
..++++++...+.++..++++.........+...|.+.||.....-..|
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 4567777776676766666554444447888999999999633333333
No 198
>PRK06217 hypothetical protein; Validated
Probab=20.48 E-value=43 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=20.7
Q ss_pred cccCcccCcccchhhhcccchhcCCC
Q 022409 234 AGIGGLSEFLGYTSQLCYPFLHISYP 259 (297)
Q Consensus 234 ~~~~G~t~~~gkT~~l~~l~~~~g~~ 259 (297)
+++.|.+ |.|||-+-++|+++.|+|
T Consensus 4 I~i~G~~-GsGKSTla~~L~~~l~~~ 28 (183)
T PRK06217 4 IHITGAS-GSGTTTLGAALAERLDIP 28 (183)
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCCc
Confidence 5677887 599999999997777886
No 199
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=20.40 E-value=43 Score=28.68 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=22.7
Q ss_pred cccCcccCcccchhhhcccchhcCCC--CcchhhH
Q 022409 234 AGIGGLSEFLGYTSQLCYPFLHISYP--STSFSKM 266 (297)
Q Consensus 234 ~~~~G~t~~~gkT~~l~~l~~~~g~~--~~~~~~~ 266 (297)
.+++|.. |.|||-+.+.+ ++.||+ .+--.+|
T Consensus 2 i~itG~~-gsGKst~~~~l-~~~g~~~i~~D~~~~ 34 (179)
T cd02022 2 IGLTGGI-GSGKSTVAKLL-KELGIPVIDADKIAH 34 (179)
T ss_pred EEEECCC-CCCHHHHHHHH-HHCCCCEEecCHHHH
Confidence 4677877 59999999999 558997 3444443
No 200
>COG3911 Predicted ATPase [General function prediction only]
Probab=20.18 E-value=56 Score=28.63 Aligned_cols=36 Identities=14% Similarity=-0.035 Sum_probs=26.5
Q ss_pred CcccccCcccCcccchhhhcccchhcCCCCcchhhHHH
Q 022409 231 LKFAGIGGLSEFLGYTSQLCYPFLHISYPSTSFSKMTY 268 (297)
Q Consensus 231 ~~~~~~~G~t~~~gkT~~l~~l~~~~g~~~~~~~~~~~ 268 (297)
.+.-.++|.. |-|||-+|++| +..||.-..-.+|-+
T Consensus 9 ~~~fIltGgp-GaGKTtLL~aL-a~~Gfatvee~~r~i 44 (183)
T COG3911 9 HKRFILTGGP-GAGKTTLLAAL-ARAGFATVEEAGRDI 44 (183)
T ss_pred ceEEEEeCCC-CCcHHHHHHHH-HHcCceeeccchhhH
Confidence 3566777777 58999999999 888996444455544
No 201
>KOG2424 consensus Protein involved in transcription start site selection [Transcription]
Probab=20.16 E-value=1.2e+02 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.2
Q ss_pred eEEEEeCCCC-cHHHHHHHHHHcCCCCEEEc
Q 022409 182 DLIVACQKGL-RSLAACELLYNAGYRNLFWV 211 (297)
Q Consensus 182 ~IVvyC~~G~-RS~~aa~~L~~~Gy~nV~~L 211 (297)
.+.+.|.+.+ ||..+-.+|++.|| +|.-+
T Consensus 7 ~~avvC~sN~NRSMeaH~~L~~~G~-~v~S~ 36 (195)
T KOG2424|consen 7 RVAVVCASNQNRSMEAHNILKKKGL-NVRSF 36 (195)
T ss_pred eeeeeehhcccchHHHHHHHHHcCC-cceee
Confidence 6788898555 99999999999999 47655
No 202
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=20.11 E-value=1.4e+02 Score=25.35 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=24.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHcCCCCEE--EccccH
Q 022409 183 LIVACQKGLRSLAACELLYNAGYRNLF--WVQGGL 215 (297)
Q Consensus 183 IVvyC~~G~RS~~aa~~L~~~Gy~nV~--~L~GG~ 215 (297)
+++...||..|..++.+|.+.|++ |. .++.|+
T Consensus 2 vlv~~SGG~DS~~la~ll~~~g~~-v~av~~d~g~ 35 (177)
T cd01712 2 ALALLSGGIDSPVAAWLLMKRGIE-VDALHFNSGP 35 (177)
T ss_pred EEEEecCChhHHHHHHHHHHcCCe-EEEEEEeCCC
Confidence 567778889999999999999985 54 555554
No 203
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=20.01 E-value=1.6e+02 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.7
Q ss_pred eEEEEeCCCCcHHHHHHHHHHcCCCCEEEccccHH
Q 022409 182 DLIVACQKGLRSLAACELLYNAGYRNLFWVQGGLE 216 (297)
Q Consensus 182 ~IVvyC~~G~RS~~aa~~L~~~Gy~nV~~L~GG~~ 216 (297)
.+||||+.-.++..++..|...||. +..+-|+..
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5999999999999999999999995 999999853
Done!