Query 022410
Match_columns 297
No_of_seqs 173 out of 1252
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.2E-53 1.8E-57 381.0 31.5 282 1-294 79-363 (365)
2 KOG0698 Serine/threonine prote 100.0 8E-45 1.7E-49 327.3 29.1 252 1-267 54-312 (330)
3 PTZ00224 protein phosphatase 2 100.0 2.2E-44 4.7E-49 327.2 29.1 234 1-262 36-274 (381)
4 KOG0697 Protein phosphatase 1B 100.0 8E-45 1.7E-49 303.8 21.9 256 1-265 36-297 (379)
5 PF00481 PP2C: Protein phospha 100.0 1.7E-45 3.6E-50 321.7 12.7 236 1-251 14-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 6.9E-43 1.5E-47 305.0 20.9 230 1-262 23-255 (262)
7 PRK14559 putative protein seri 100.0 1.5E-38 3.2E-43 304.1 25.4 241 1-263 390-639 (645)
8 cd00143 PP2Cc Serine/threonine 100.0 1.4E-37 3.1E-42 270.7 27.7 236 1-258 15-254 (254)
9 KOG0699 Serine/threonine prote 100.0 2.4E-38 5.1E-43 273.7 19.9 170 96-266 330-509 (542)
10 smart00332 PP2Cc Serine/threon 100.0 9.5E-37 2.1E-41 266.1 27.5 232 1-256 20-255 (255)
11 KOG0700 Protein phosphatase 2C 100.0 8.6E-36 1.9E-40 263.5 18.3 225 22-246 96-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 2.6E-27 5.7E-32 203.4 20.7 243 19-263 138-491 (493)
13 KOG1379 Serine/threonine prote 99.9 1.1E-24 2.3E-29 187.2 21.4 201 2-258 92-330 (330)
14 smart00331 PP2C_SIG Sigma fact 99.8 4E-19 8.7E-24 148.7 18.6 167 18-243 23-192 (193)
15 KOG0618 Serine/threonine phosp 99.8 2.9E-19 6.4E-24 172.1 17.1 217 22-261 548-774 (1081)
16 PF13672 PP2C_2: Protein phosp 99.8 1.1E-19 2.5E-24 154.3 10.3 167 23-226 22-196 (212)
17 TIGR02865 spore_II_E stage II 99.7 3E-16 6.5E-21 155.4 19.9 180 19-258 574-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 4.8E-14 1E-18 117.8 19.8 178 23-259 2-193 (193)
19 COG2208 RsbU Serine phosphatas 99.0 6.8E-08 1.5E-12 88.9 19.4 185 18-259 168-366 (367)
20 PRK10693 response regulator of 90.2 2.8 6.1E-05 37.5 9.7 103 12-127 150-258 (303)
21 PF09436 DUF2016: Domain of un 57.1 6.9 0.00015 26.9 1.4 23 195-218 25-47 (72)
22 COG2168 DsrH Uncharacterized c 45.4 14 0.0003 26.9 1.5 53 192-252 20-72 (96)
23 PRK13845 putative glycerol-3-p 32.2 2.8E+02 0.006 26.3 8.1 32 24-55 320-354 (437)
24 PF01436 NHL: NHL repeat; Int 32.1 88 0.0019 16.8 3.4 21 103-123 8-28 (28)
25 COG1539 FolB Dihydroneopterin 28.9 2.6E+02 0.0057 21.3 7.2 62 203-266 43-106 (121)
26 PRK15322 invasion protein OrgB 28.3 2.7E+02 0.0059 23.4 6.6 52 192-244 142-194 (210)
27 COG4669 EscJ Type III secretor 27.8 63 0.0014 27.8 2.9 48 235-282 167-214 (246)
28 TIGR00182 plsX fatty acid/phos 27.0 3.6E+02 0.0079 24.4 7.9 31 25-55 209-242 (322)
29 PF04155 Ground-like: Ground-l 25.1 2.3E+02 0.005 19.3 5.5 44 212-257 6-49 (76)
30 PHA02754 hypothetical protein; 22.4 67 0.0015 21.0 1.7 20 195-214 42-61 (67)
31 KOG3193 K+ channel subunit [In 22.2 1.5E+02 0.0033 28.8 4.6 133 107-285 474-607 (1087)
32 KOG0641 WD40 repeat protein [G 21.6 4E+02 0.0086 23.0 6.5 30 107-136 242-273 (350)
33 TIGR03859 PQQ_PqqD coenzyme PQ 21.4 2.1E+02 0.0046 19.8 4.3 41 198-241 16-56 (81)
34 TIGR03735 PRTRC_A PRTRC system 21.1 56 0.0012 27.2 1.4 50 195-245 24-90 (192)
35 PRK05331 putative phosphate ac 20.4 6.2E+02 0.014 23.0 8.2 32 25-56 222-256 (334)
36 cd00534 DHNA_DHNTPE Dihydroneo 20.0 3.8E+02 0.0081 19.9 6.0 58 203-262 42-101 (118)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.2e-53 Score=381.03 Aligned_cols=282 Identities=52% Similarity=0.879 Sum_probs=236.1
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|+...++....+.......+..+|+|||||||+.+|++|++.+.+.+.+.... ...+.++|.++|.
T Consensus 79 nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~----------~~~~~~al~~af~ 148 (365)
T PLN03145 79 MEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDF----------PREIEKVVSSAFL 148 (365)
T ss_pred CCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhcc----------chhHHHHHHHHHH
Confidence 899998876554322211122334689999999999999999999999999764322 1367788999999
Q ss_pred HHhHHhHhhcCCC--CCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCee
Q 022410 81 MADQALADDCSVS--SSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYL 158 (297)
Q Consensus 81 ~~~~~l~~~~~~~--~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~ 158 (297)
.+++.+.+..... ..+|||++++++.++.+|++|+||||+|+++++++++||+||++..+.|++||.+.||.+..++.
T Consensus 149 ~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v 228 (365)
T PLN03145 149 QTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYL 228 (365)
T ss_pred HHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceE
Confidence 9999987654322 45999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeeccccCCCccCCCC-CCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHH
Q 022410 159 NGVLSVSRALGDWDMKLPR-GSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARD 237 (297)
Q Consensus 159 ~~~~~~traiG~~~~~~~~-~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~ 237 (297)
++.+.+||+||++.+|..+ ..+.++.++|++..+++.++|.|||||||||||+++++++.+++...+....+++++|+.
T Consensus 229 ~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~ 308 (365)
T PLN03145 229 NGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKE 308 (365)
T ss_pred CCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999998776322 122356789999999999999999999999999999999999887777777789999999
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCCCCCCCCcccCCcccccCChhhhhhHhhhhcCC
Q 022410 238 LVMEALRLNTFDNLTVIIVCFTSLDHREPSPPRQRRMRCCSLSAEALCSLRSLLDGN 294 (297)
Q Consensus 238 L~~~a~~~~~~DNiTvivi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (297)
|++.|+.+++.||+|||||+|+..+++....+..+..+ +.+++.|-.|+++||+-
T Consensus 309 Lv~~Al~rgs~DNITvIVV~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 363 (365)
T PLN03145 309 LVDEALKRKSGDNLAVVVVCFQSQPPPNLVAPRPRVQR--SISAEGLRELQSFLDSL 363 (365)
T ss_pred HHHHHHhCCCCCCEEEEEEEeecCCCcccccccccccc--ccCHHHHHHHHHhhhcc
Confidence 99999999999999999999998755544444444444 77899999999999974
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8e-45 Score=327.26 Aligned_cols=252 Identities=44% Similarity=0.646 Sum_probs=219.4
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|....++..... ....+..+|||||||||..+|+|+.+++...+.+...+.... ...+.++.++|.
T Consensus 54 med~~~~~~~~~~~~~---~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~-------~~~~~a~~~~F~ 123 (330)
T KOG0698|consen 54 MEDRHVQLPDFLEEDV---GGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR-------QDVKDALRRAFL 123 (330)
T ss_pred cCcceeeccccccccc---CCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch-------HHHHHHHHHHHH
Confidence 8999999887664222 112268999999999999999999999999999887665522 358999999999
Q ss_pred -HHhHHhHhhcCCCCCCCCeEEeeEeecc-eEEEEeeccceEEEEecC-ccccCCCCCCCCChhHHHHHHHcCCeeec--
Q 022410 81 -MADQALADDCSVSSSSGTTALTAMIFGR-FLMVANAGDCRAVLCRKG-EAIDLSQDHRPIYPSERRRVEELGGYVDD-- 155 (297)
Q Consensus 81 -~~~~~l~~~~~~~~~~GtT~~~~~i~~~-~l~ianvGDSr~~l~~~g-~~~~lt~dh~~~~~~e~~ri~~~g~~~~~-- 155 (297)
.++..+.+.......+|||++++++.++ ++|+||+||||++++++| ..++||.||.|+.+.|+.||.++||.+..
T Consensus 124 ~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~ 203 (330)
T KOG0698|consen 124 TKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWG 203 (330)
T ss_pred HHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcC
Confidence 5999998763223678888888888855 999999999999999876 79999999999999999999999999985
Q ss_pred --CeecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHH
Q 022410 156 --GYLNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQ 233 (297)
Q Consensus 156 --~~~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~ 233 (297)
.++.|.+++||+|||..+|. .+++++|++....+.+.|.||||+||||||+++++|+.++++..+.....+..
T Consensus 204 ~~~Rv~G~LavsRa~GD~~~k~-----~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~ 278 (330)
T KOG0698|consen 204 GVWRVNGVLAVSRAFGDVELKS-----QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLA 278 (330)
T ss_pred CcceEeceEEEeeecCCHHhcC-----CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHH
Confidence 38999999999999999885 58899999999999998999999999999999999999999876655778999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEEccCCCCCCCC
Q 022410 234 CARDLVMEALRLNTFDNLTVIIVCFTSLDHREPS 267 (297)
Q Consensus 234 ~a~~L~~~a~~~~~~DNiTvivi~l~~~~~~~~~ 267 (297)
++..|...+..+++.||+|||||.|......+..
T Consensus 279 a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 279 AAKLLATEALSRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEEecCccccccC
Confidence 9999999999999999999999999988665554
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.2e-44 Score=327.16 Aligned_cols=234 Identities=31% Similarity=0.515 Sum_probs=199.4
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|++..+ ++..+|+|||||||..+++++++.+.+.+...... ...+.|++++.
T Consensus 36 nED~~~v~~~------------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~------------~~~~~l~~a~~ 91 (381)
T PTZ00224 36 MEDAHLLYLT------------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP------------MTDERMEELCL 91 (381)
T ss_pred CCCeeEeccC------------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc------------ccHHHHHHHHH
Confidence 8999886421 24469999999999999999999998877543211 11234788999
Q ss_pred HHhHHhHhhcCCCCCCCCeEEeeEee-cceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCeec
Q 022410 81 MADQALADDCSVSSSSGTTALTAMIF-GRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLN 159 (297)
Q Consensus 81 ~~~~~l~~~~~~~~~~GtT~~~~~i~-~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~ 159 (297)
.+|+.+.+.. ..+|||++++++. +..++++|+||||+|++|+|++++||+||++.++.|+.||.+.|+.+..++..
T Consensus 92 ~~d~~i~~~~---~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~ 168 (381)
T PTZ00224 92 EIDEEWMDSG---REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVD 168 (381)
T ss_pred HHHHHHHhcc---cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecccccc
Confidence 9999988654 3469999998886 57999999999999999999999999999999999999999999999888889
Q ss_pred CeeeeccccCCCccCCCCC---CCCCcccCceeEEEEecCCCeEEEEEcCcccc-ccChHHHHHHHHHHHhcCCCHHHHH
Q 022410 160 GVLSVSRALGDWDMKLPRG---SSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWD-VMSSQHAVSLVLRGLRRHDDPEQCA 235 (297)
Q Consensus 160 ~~~~~traiG~~~~~~~~~---~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d-~l~~~ei~~~l~~~~~~~~~~~~~a 235 (297)
+.+.+||+||+..+|.+.. ....+.+.|++..+++.++| +|||||||||| .++++|+.+++...+....+++.+|
T Consensus 169 G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA 247 (381)
T PTZ00224 169 GDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVA 247 (381)
T ss_pred CceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999998886542 22456789999999999988 77799999999 7999999999977666667899999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEccCCC
Q 022410 236 RDLVMEALRLNTFDNLTVIIVCFTSLD 262 (297)
Q Consensus 236 ~~L~~~a~~~~~~DNiTvivi~l~~~~ 262 (297)
+.|++.|+.+|+.||||||||++....
T Consensus 248 ~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 248 GRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred HHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 999999999999999999999998664
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=8e-45 Score=303.82 Aligned_cols=256 Identities=34% Similarity=0.616 Sum_probs=223.4
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|.+...+.... +++.+|+|||||.|...+.+++.++.+.+.+.-.+....... ..+..+.-|+..|.
T Consensus 36 MEDah~A~~~l~~~l-------~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~g--sv~~~~~GIrtGFL 106 (379)
T KOG0697|consen 36 MEDAHTAVAGLPSPL-------EDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNG--SVENVEKGIRTGFL 106 (379)
T ss_pred hhhhhhhhhcCCCCc-------cCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCC--cHHHHHhhHhhcce
Confidence 999999987766443 478899999999999999999999999887654443322111 23688899999999
Q ss_pred HHhHHhHhhcCC---CCCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCe
Q 022410 81 MADQALADDCSV---SSSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGY 157 (297)
Q Consensus 81 ~~~~~l~~~~~~---~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~ 157 (297)
.+++.+...... ..++|||++++++....+|++|+||||++++|+|+.++-|.||.|.+|.|++||+.+||.+-=.+
T Consensus 107 ~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqR 186 (379)
T KOG0697|consen 107 SIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQR 186 (379)
T ss_pred eHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEE
Confidence 999887654332 26699999999999999999999999999999999999999999999999999999999998889
Q ss_pred ecCeeeeccccCCCccCCCCCCC---CCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHH
Q 022410 158 LNGVLSVSRALGDWDMKLPRGSS---SPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQC 234 (297)
Q Consensus 158 ~~~~~~~traiG~~~~~~~~~~~---~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~ 234 (297)
++|.++++|+|||++||.-...+ ..+.++|+++.+...+.|.||||++|||||+++++|+.+++...+.-..++..+
T Consensus 187 vNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~v 266 (379)
T KOG0697|consen 187 VNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEV 266 (379)
T ss_pred ecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHH
Confidence 99999999999999999654443 678899999999988888899999999999999999999999988888999999
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEccCCCCCC
Q 022410 235 ARDLVMEALRLNTFDNLTVIIVCFTSLDHRE 265 (297)
Q Consensus 235 a~~L~~~a~~~~~~DNiTvivi~l~~~~~~~ 265 (297)
|..+++.++-+|+.||+|+|+|-|...+...
T Consensus 267 cn~VvDtCLhKGSRDNMsivlvcfp~APkv~ 297 (379)
T KOG0697|consen 267 CNDVVDTCLHKGSRDNMSIVLVCFPGAPKVS 297 (379)
T ss_pred HHHHHHHHHhccCccCceEEEEecCCCCCCC
Confidence 9999999999999999999999997764443
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.7e-45 Score=321.73 Aligned_cols=236 Identities=46% Similarity=0.772 Sum_probs=196.8
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|+...++... ....+..+|+|||||||..++.++++.+.+.+.+....... ..+.++|..+|.
T Consensus 14 ~eD~~~~~~~~~~~-----~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~--------~~~~~al~~a~~ 80 (254)
T PF00481_consen 14 MEDRHLIIQNFNSN-----SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG--------NDIEEALRQAFL 80 (254)
T ss_dssp HHEEEEEEEEETCC-----TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred ccCEEEEecCcccc-----CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccc--------cchhhcccceee
Confidence 79999998865432 22456789999999999999999999999888776544331 268889999999
Q ss_pred H-HhHHhHhhcC--CCCCCCCeEEeeEeecceEEEEeeccceEEEEecCccc-cCCCCCCCCChhHHHHHHHcCCeee-c
Q 022410 81 M-ADQALADDCS--VSSSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAI-DLSQDHRPIYPSERRRVEELGGYVD-D 155 (297)
Q Consensus 81 ~-~~~~l~~~~~--~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~-~lt~dh~~~~~~e~~ri~~~g~~~~-~ 155 (297)
. ++..+.+... ....+|||++++++.++++|+||+||||+|+++.+... +||+||+|.++.|+.||++.||.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~ 160 (254)
T PF00481_consen 81 AFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSEN 160 (254)
T ss_dssp HHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEET
T ss_pred ecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccc
Confidence 9 8888876322 34789999999999999999999999999999999888 9999999999999999999999999 7
Q ss_pred CeecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHH
Q 022410 156 GYLNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCA 235 (297)
Q Consensus 156 ~~~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a 235 (297)
+++.+.+++||+|||..+|.+. +.++.++|++..+++.++|.|||||||||||+++++|+.+++........+|+.+|
T Consensus 161 ~rv~g~l~~sRalGd~~~k~~~--~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a 238 (254)
T PF00481_consen 161 GRVNGVLAVSRALGDFDLKPPG--KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAA 238 (254)
T ss_dssp EEETTTBSSSB-EE-GGGTTCT--SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred hhhhhccccccccccccccccc--cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 8899999999999999998644 56899999999999999999999999999999999999999988766556799999
Q ss_pred HHHHHHHHhcCCCCCe
Q 022410 236 RDLVMEALRLNTFDNL 251 (297)
Q Consensus 236 ~~L~~~a~~~~~~DNi 251 (297)
+.|++.|+++|+.|||
T Consensus 239 ~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 239 EKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999999999999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-43 Score=305.05 Aligned_cols=230 Identities=30% Similarity=0.439 Sum_probs=192.0
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|+...+-.. .. ..+|+|||||||+.+|++||+.+++.|.+.+......... ....+.+.+++.
T Consensus 23 NeD~~~~~~~~~~--------~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~----~~~~~~l~~~~~ 89 (262)
T COG0631 23 NEDAFLIKPNENG--------NL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLN----ESLEELLKEAIL 89 (262)
T ss_pred CCcceeeccccCC--------cc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccc----hhHHHHHHHHHH
Confidence 5788877652110 11 4699999999999999999999999999887654322211 116889999999
Q ss_pred HHhHHhHhhcC---CCCCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCe
Q 022410 81 MADQALADDCS---VSSSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGY 157 (297)
Q Consensus 81 ~~~~~l~~~~~---~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~ 157 (297)
.+++.+..... ...++|||++++++.++++++||+||||+|++|+|+++++|.||++.+..++.++...++...
T Consensus 90 ~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~--- 166 (262)
T COG0631 90 KANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARS--- 166 (262)
T ss_pred HHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHh---
Confidence 99999998764 338899999999999999999999999999999999999999999887777776543332222
Q ss_pred ecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHH
Q 022410 158 LNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARD 237 (297)
Q Consensus 158 ~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~ 237 (297)
++.++.+||+||+.+ ...|++....++++| |+|||||||||.++++++.+++ +...+++.+++.
T Consensus 167 ~~~~~~ltralG~~~-----------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il----~~~~~~~~~~~~ 230 (262)
T COG0631 167 HPRRNALTRALGDFD-----------LLEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDIL----KNSETPQEAADK 230 (262)
T ss_pred CccchhhhhhcCCCc-----------ccceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHH----hcCCCHHHHHHH
Confidence 356668999999988 478999999999997 7779999999999999999999 447899999999
Q ss_pred HHHHHHhcCCCCCeEEEEEEccCCC
Q 022410 238 LVMEALRLNTFDNLTVIIVCFTSLD 262 (297)
Q Consensus 238 L~~~a~~~~~~DNiTvivi~l~~~~ 262 (297)
|++.|+.+++.||+|+++|.+....
T Consensus 231 li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 231 LIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred HHHHHHhcCCCCceEEEEEEeeccc
Confidence 9999999999999999999998775
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.5e-38 Score=304.10 Aligned_cols=241 Identities=24% Similarity=0.250 Sum_probs=176.1
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||++.+..++.....+.-....+..+|+|||||||+.+|++||+.+++.|.+.+....... ....+.++++|.
T Consensus 390 NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~------~~~~~~L~~ai~ 463 (645)
T PRK14559 390 NEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE------LPDEETIREAIY 463 (645)
T ss_pred cCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc------ccHHHHHHHHHH
Confidence 68887665433211111001112457999999999999999999999999877654221110 023567899999
Q ss_pred HHhHHhHhhcCC-----CCCCCCeEEeeEeecceEEEEeeccceEEEEe-cCccccCCCCCCCCChhHHHHHHHcCCeee
Q 022410 81 MADQALADDCSV-----SSSSGTTALTAMIFGRFLMVANAGDCRAVLCR-KGEAIDLSQDHRPIYPSERRRVEELGGYVD 154 (297)
Q Consensus 81 ~~~~~l~~~~~~-----~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~-~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~ 154 (297)
.+|+.|.+.... ..+||||++++++.++++|++||||||+|+++ +|++++||+||++.. ++.+.| ...
T Consensus 464 ~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~-----~lv~~G-i~~ 537 (645)
T PRK14559 464 LANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQ-----REIQRG-VEP 537 (645)
T ss_pred HHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHH-----HHHHhC-CCH
Confidence 999999765422 25799999999999999999999999999984 689999999999642 233334 111
Q ss_pred c--CeecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccc-cChHHHHHHHHHHHhcCCCH
Q 022410 155 D--GYLNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDV-MSSQHAVSLVLRGLRRHDDP 231 (297)
Q Consensus 155 ~--~~~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~-l~~~ei~~~l~~~~~~~~~~ 231 (297)
. ...++++.+||+||+...+ ..+|++..+.+.++| ++|||||||||+ +.+..+.+.+...+....++
T Consensus 538 ~~a~~~p~~~~LTrALG~~~~~---------~l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l 607 (645)
T PRK14559 538 QIAYARPDAYQLTQALGPRDNS---------AIQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTHLLPLLSSSANL 607 (645)
T ss_pred HHHhcCcccceeeeccCCCCCC---------cccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHHHHHHHhcCCCH
Confidence 1 1246778999999986533 458999999999988 455999999994 33333333333444667789
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEEccCCCC
Q 022410 232 EQCARDLVMEALRLNTFDNLTVIIVCFTSLDH 263 (297)
Q Consensus 232 ~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~~ 263 (297)
+++++.|++.|+.+|++||+|+|+|++...+.
T Consensus 608 ~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 608 DQGLNKLIDLANQYNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEEEeccCCC
Confidence 99999999999999999999999999976644
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=1.4e-37 Score=270.73 Aligned_cols=236 Identities=43% Similarity=0.728 Sum_probs=199.8
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
+||++++...... .+..+|+|||||||+..|++|++.+++.+.+.+..... .....+...|.++|+
T Consensus 15 neD~~~~~~~~~~---------~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~-----~~~~~~~~~l~~~~~ 80 (254)
T cd00143 15 NEDAVVIKPNLNN---------EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLT-----LSEEDIEEALRKAFL 80 (254)
T ss_pred CcceEEEeccCCC---------CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc-----cchHHHHHHHHHHHH
Confidence 4788777543110 25679999999999999999999999999887654321 012577888999999
Q ss_pred HHhHHhHhhcC---CCCCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCe
Q 022410 81 MADQALADDCS---VSSSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGY 157 (297)
Q Consensus 81 ~~~~~l~~~~~---~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~ 157 (297)
.+++.+..... ....+|||++++++..+.++++|+||||+|++++++++++|.||++..+.++.|+...++......
T Consensus 81 ~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~ 160 (254)
T cd00143 81 RADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGR 160 (254)
T ss_pred HHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCE
Confidence 99999987654 236789999999999999999999999999999999999999999988899999999999887778
Q ss_pred ecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEe-cCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHH
Q 022410 158 LNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVL-TEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCAR 236 (297)
Q Consensus 158 ~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l-~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~ 236 (297)
.++++.+|++||+..++ .++...|++..+++ +++| +|+|||||||+++++++|.+++.... ...+++++|+
T Consensus 161 ~~~~~~~t~~lG~~~~~------~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~-~~~~~~~~a~ 232 (254)
T cd00143 161 VPGVLAVTRALGDFDLK------PGVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSEL-AKEDLQEAAQ 232 (254)
T ss_pred EcCceeeccccCCcccc------CCEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHh-cccCHHHHHH
Confidence 88999999999988655 34578899999999 8888 56699999999999999999986421 1127999999
Q ss_pred HHHHHHHhcCCCCCeEEEEEEc
Q 022410 237 DLVMEALRLNTFDNLTVIIVCF 258 (297)
Q Consensus 237 ~L~~~a~~~~~~DNiTvivi~l 258 (297)
.|++.|..+++.||+|+|++++
T Consensus 233 ~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 233 ELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHHhCCCCCCEEEEEEeC
Confidence 9999999999999999999875
No 9
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-38 Score=273.68 Aligned_cols=170 Identities=41% Similarity=0.630 Sum_probs=157.6
Q ss_pred CCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeee-cCeecCeeeeccccCCCccC
Q 022410 96 SGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVD-DGYLNGVLSVSRALGDWDMK 174 (297)
Q Consensus 96 ~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~-~~~~~~~~~~traiG~~~~~ 174 (297)
+|||++||++.++++++||.||||+++.|.|+.+-++.||.|....|..||.++||.+. +++++|.++++|+||+..||
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK 409 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYK 409 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhh
Confidence 49999999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred CCCCCC---CCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc------
Q 022410 175 LPRGSS---SPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRL------ 245 (297)
Q Consensus 175 ~~~~~~---~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~------ 245 (297)
..+..+ ..|..-|+|....|.+.|.|+|+++||||++++.++++++++..+..+..+..+++.|.+.++.-
T Consensus 410 ~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDG 489 (542)
T KOG0699|consen 410 KNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDG 489 (542)
T ss_pred cccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCC
Confidence 876655 66789999999999999999999999999999999999999999998899999999999999874
Q ss_pred CCCCCeEEEEEEccCCCCCCC
Q 022410 246 NTFDNLTVIIVCFTSLDHREP 266 (297)
Q Consensus 246 ~~~DNiTvivi~l~~~~~~~~ 266 (297)
-+.||+|||++.|. ....+-
T Consensus 490 TGCDNMT~ii~~Fk-rk~~el 509 (542)
T KOG0699|consen 490 TGCDNMTVIITTFK-RKSKEL 509 (542)
T ss_pred cCCCcceEEEEEec-cchhhc
Confidence 26799999999997 433443
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=9.5e-37 Score=266.10 Aligned_cols=232 Identities=47% Similarity=0.780 Sum_probs=197.4
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
+||+++...+. ..+..+|+|||||||..+++++++.+.+.+.+........ ...+.+.|.+++.
T Consensus 20 neD~~~~~~~~----------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 83 (255)
T smart00332 20 MEDAHVITPDL----------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDE------LEDVEEALRKAFL 83 (255)
T ss_pred CcceEEEeccC----------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccc------hhHHHHHHHHHHH
Confidence 47777765431 1467799999999999999999999999998764433211 0357888999999
Q ss_pred HHhHHhHhhcCCC---CCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCe
Q 022410 81 MADQALADDCSVS---SSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGY 157 (297)
Q Consensus 81 ~~~~~l~~~~~~~---~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~ 157 (297)
.+++.+....... ..+|||++++++..+.++++|+||||+|+++++++.++|+||++..+.|..|+...++.+..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~ 163 (255)
T smart00332 84 KTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGR 163 (255)
T ss_pred HHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCe
Confidence 9999998765432 5789999999999999999999999999999999999999999999999999999999998888
Q ss_pred ecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEe-cCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHH
Q 022410 158 LNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVL-TEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCAR 236 (297)
Q Consensus 158 ~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l-~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~ 236 (297)
+++.+.+||++|...++ +.+...|++...++ +++| +|||||||||++++++++.+++...... .++..+++
T Consensus 164 ~~~~~~lt~~~g~~~~~------~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~ 235 (255)
T smart00332 164 VNGVLALSRAIGDFFLK------PYVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAK 235 (255)
T ss_pred ECCeEecccccCCHhhc------CCeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHH
Confidence 99999999999988765 46678899999996 8888 5669999999999999999999654221 36999999
Q ss_pred HHHHHHHhcCCCCCeEEEEE
Q 022410 237 DLVMEALRLNTFDNLTVIIV 256 (297)
Q Consensus 237 ~L~~~a~~~~~~DNiTvivi 256 (297)
.|++.|..++..||+|+|+|
T Consensus 236 ~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 236 RLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHcCCCCCeEEEEC
Confidence 99999999999999999985
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-36 Score=263.47 Aligned_cols=225 Identities=32% Similarity=0.470 Sum_probs=183.5
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCC---------CCCC---------------CchhHHHHHHHHHHHH
Q 022410 22 PKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSF---------PQSS---------------EEDDVFLEGVESSLRK 77 (297)
Q Consensus 22 ~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~---------~~~~---------------~~~~~~~~~~~~~l~~ 77 (297)
.++..|+||||||||.+++++.++.+..++..++.. .... .........+.++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 567789999999999999999999999999843321 0000 0000013678999999
Q ss_pred HHHHHhHHhHhhcCCC-------CCCCCeEEeeEeecceEEEEeeccceEEEEec---C---ccccCCCCCCCCChhHHH
Q 022410 78 AYLMADQALADDCSVS-------SSSGTTALTAMIFGRFLMVANAGDCRAVLCRK---G---EAIDLSQDHRPIYPSERR 144 (297)
Q Consensus 78 a~~~~~~~l~~~~~~~-------~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~---g---~~~~lt~dh~~~~~~e~~ 144 (297)
||+++++.+....... .-+|+|++++++.++.+||||+||||++|-.. + ..+|||.||+.++++|+.
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 9999999986433211 66899999999999999999999999999543 3 468999999999999999
Q ss_pred HHHHcCC----eeecC--eecCeeeeccccCCCccCCCCCC---------------CCCcccCceeEEEEecCCCeEEEE
Q 022410 145 RVEELGG----YVDDG--YLNGVLSVSRALGDWDMKLPRGS---------------SSPLIAEPEFQQMVLTEGDEFLII 203 (297)
Q Consensus 145 ri~~~g~----~~~~~--~~~~~~~~traiG~~~~~~~~~~---------------~~~i~~~p~i~~~~l~~gd~~LvL 203 (297)
||+..+- .+... ++.|.+.+||||||..+|+|+-. ++.++++|.++..+|.|.|+||||
T Consensus 256 Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred HHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 9999873 33334 89999999999999999988643 488899999999999999999999
Q ss_pred EcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 022410 204 GCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLN 246 (297)
Q Consensus 204 ~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~ 246 (297)
+|||+|++++++|+++++..++.....-+.+|+.|++.|+.+.
T Consensus 336 ASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 336 ASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred eccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999998876543344678999999988764
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=2.6e-27 Score=203.37 Aligned_cols=243 Identities=31% Similarity=0.440 Sum_probs=182.9
Q ss_pred ccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCC------------------------CCCCCc-----hhH-HH
Q 022410 19 FKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSF------------------------PQSSEE-----DDV-FL 68 (297)
Q Consensus 19 ~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~------------------------~~~~~~-----~~~-~~ 68 (297)
|...-+..+|.+||||.|..+|-.|++.+.+.+.+.+.. ++..+. ... ..
T Consensus 138 ~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E 217 (493)
T KOG1323|consen 138 FAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHE 217 (493)
T ss_pred cCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchH
Confidence 444456789999999999999999999888877665430 000000 000 11
Q ss_pred HHHHHHHHHHHHHHhHHhHhhcCCC-CCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHH
Q 022410 69 EGVESSLRKAYLMADQALADDCSVS-SSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVE 147 (297)
Q Consensus 69 ~~~~~~l~~a~~~~~~~l~~~~~~~-~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~ 147 (297)
.-+..+|+.||+..+++|.+..... ..+|||+++++..-+++|++|.||||++++|++++..|+++.+| +.||+|++
T Consensus 218 ~LViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTP--etERqRlQ 295 (493)
T KOG1323|consen 218 HLVIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTP--ETERQRLQ 295 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCc--HHHHHHHH
Confidence 3467899999999999998765443 78899999999999999999999999999999999999999995 57899998
Q ss_pred HcC--------Ceee-----------------------------------------------cCeecCeeeeccccCCCc
Q 022410 148 ELG--------GYVD-----------------------------------------------DGYLNGVLSVSRALGDWD 172 (297)
Q Consensus 148 ~~g--------~~~~-----------------------------------------------~~~~~~~~~~traiG~~~ 172 (297)
..+ +... ..+..+.+.+||.+||..
T Consensus 296 ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~ 375 (493)
T KOG1323|consen 296 ELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHH 375 (493)
T ss_pred HHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcce
Confidence 754 1100 001234567999999999
Q ss_pred cCCC---CCCCCCcccCceeEEEEecC----CCeEEEEEcCccccccChHHHHHHHHHHHhcCC--CH---HHHHHHHHH
Q 022410 173 MKLP---RGSSSPLIAEPEFQQMVLTE----GDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHD--DP---EQCARDLVM 240 (297)
Q Consensus 173 ~~~~---~~~~~~i~~~p~i~~~~l~~----gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~--~~---~~~a~~L~~ 240 (297)
.+.- ....+.+.+.|++..+.+.. .|.++||+|||+||+++++|++.++...+-..+ +| ..+|+.|+.
T Consensus 376 Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva 455 (493)
T KOG1323|consen 376 LKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVA 455 (493)
T ss_pred eeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Confidence 8743 23457788999999888753 234788999999999999999999988875443 34 357777877
Q ss_pred HHHhc-------------CCCCCeEEEEEEccCCCC
Q 022410 241 EALRL-------------NTFDNLTVIIVCFTSLDH 263 (297)
Q Consensus 241 ~a~~~-------------~~~DNiTvivi~l~~~~~ 263 (297)
.|... ++-|||||.||-+.....
T Consensus 456 ~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~~ 491 (493)
T KOG1323|consen 456 AARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCAA 491 (493)
T ss_pred HhcCccCCCceeccCCCcCCCCceEEEEEeccCCCC
Confidence 76421 478999999999976543
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=187.17 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=141.1
Q ss_pred CceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHH-----HHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHH
Q 022410 2 EDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEA-----AAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLR 76 (297)
Q Consensus 2 ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~-----a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 76 (297)
||+||+..+ ....++|||||+|||.. +.| |+.++....+......-. ..++...|.
T Consensus 92 EDa~Fvss~------------~~~~v~GVADGVGGWa~~GiDpg~f-S~eLM~~ce~~v~~~~~~------~~~P~~lL~ 152 (330)
T KOG1379|consen 92 EDAWFVSSN------------PHAIVMGVADGVGGWAEYGIDPGAF-SRELMSNCERLVQNSDFN------PSDPVNLLE 152 (330)
T ss_pred CcceeeccC------------cccceEEEccccchHhhcCcCHHHH-HHHHHHHHHHHhcccccC------CCChHHHHH
Confidence 788888764 34569999999999864 433 334444444433322211 135666666
Q ss_pred HHHHHHhHHhHhhcCCCCCCCCeEEeeEee--cceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeee
Q 022410 77 KAYLMADQALADDCSVSSSSGTTALTAMIF--GRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVD 154 (297)
Q Consensus 77 ~a~~~~~~~l~~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~ 154 (297)
+++.++ .+.. ...-++||++++.+. +++|+++|+|||-..++|+|++++-|..+...
T Consensus 153 ~ay~~l----~~~~-~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~---------------- 211 (330)
T KOG1379|consen 153 KAYAEL----KSQK-VPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY---------------- 211 (330)
T ss_pred HHHHHH----hhcC-CCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec----------------
Confidence 666543 3221 123477888888888 89999999999999999999999998887511
Q ss_pred cCeecCeeeec-------cccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHh-
Q 022410 155 DGYLNGVLSVS-------RALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLR- 226 (297)
Q Consensus 155 ~~~~~~~~~~t-------raiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~- 226 (297)
++--+.+| .+++|. .-..+.+.+++++|| +|||+||||||++.+++|.+++.....
T Consensus 212 ---FN~PyQLs~~p~~~~~~~~d~------------p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~ 275 (330)
T KOG1379|consen 212 ---FNTPYQLSSPPEGYSSYISDV------------PDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDAR 275 (330)
T ss_pred ---cCCceeeccCCccccccccCC------------ccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhcc
Confidence 11111111 122221 345788899999999 566999999999999999999987765
Q ss_pred cCCCHHHHHHHHHHHHHhc-----------------------CCCCCeEEEEEEc
Q 022410 227 RHDDPEQCARDLVMEALRL-----------------------NTFDNLTVIIVCF 258 (297)
Q Consensus 227 ~~~~~~~~a~~L~~~a~~~-----------------------~~~DNiTvivi~l 258 (297)
...+++..|+.+...|.+. |+.||||+|+..+
T Consensus 276 ~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 276 GNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred ccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 6678999999999988532 4589999998753
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.83 E-value=4e-19 Score=148.74 Aligned_cols=167 Identities=23% Similarity=0.209 Sum_probs=127.8
Q ss_pred CccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhHhhcCCCCCCC
Q 022410 18 CFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALADDCSVSSSSG 97 (297)
Q Consensus 18 ~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~G 97 (297)
.+..+++..+++|+||||+...|.+++..+...+.+...... .+.+.+..+|+.+... ....++
T Consensus 23 ~~~~~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~--------------~~~~~l~~~n~~l~~~--~~~~~~ 86 (193)
T smart00331 23 VVKLPEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI--------------SLSQILERLNRAIYEN--GEDGMF 86 (193)
T ss_pred EEEeCCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC--------------CHHHHHHHHHHHHHhc--CCCCcE
Confidence 455667788999999999999999999999999877644321 2455666677777654 235689
Q ss_pred CeEEeeEe--ecceEEEEeeccceEEEEe-cCccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccC
Q 022410 98 TTALTAMI--FGRFLMVANAGDCRAVLCR-KGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMK 174 (297)
Q Consensus 98 tT~~~~~i--~~~~l~ianvGDSr~~l~~-~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~ 174 (297)
+|++++++ ..++++++|+||+|+|+++ ++...+.+.+. +..+|...
T Consensus 87 ~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~-----------------------------~~~lG~~~-- 135 (193)
T smart00331 87 ATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL-----------------------------GAPLGLEP-- 135 (193)
T ss_pred EEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC-----------------------------CceeeeCC--
Confidence 99999998 5789999999999999999 55555555543 35566444
Q ss_pred CCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022410 175 LPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVMEAL 243 (297)
Q Consensus 175 ~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~ 243 (297)
...+++..+++++||+++ |+||||++.+.++++.+++.+. ...+++++++.+.+.+.
T Consensus 136 ---------~~~~~~~~~~l~~gd~l~-l~TDGl~e~~~~~~l~~~l~~~--~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 136 ---------DVEVDVRELTLEPGDLLL-LYTDGLTEARNPERLEELLEEL--LGSPPAEIAQRILEELL 192 (193)
T ss_pred ---------CCcceeEEEeeCCCCEEE-EECCCccccCChHHHHHHHHHh--cCCCHHHHHHHHHHHHh
Confidence 345778899999999655 9999999999999999988753 23568888998888764
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.9e-19 Score=172.06 Aligned_cols=217 Identities=29% Similarity=0.530 Sum_probs=187.6
Q ss_pred CCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhHhhcCCCCCCCCeEE
Q 022410 22 PKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALADDCSVSSSSGTTAL 101 (297)
Q Consensus 22 ~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~GtT~~ 101 (297)
..+...|+.+||-+......+....+..++.+....... -.+.|..+|...++++...+ ...|..++
T Consensus 548 ~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~----------et~~mr~~fl~~~rklg~~g---~~lg~~~~ 614 (1081)
T KOG0618|consen 548 LNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGN----------ETEQMRNTFLRLNRKLGEEG---QVLGGSVV 614 (1081)
T ss_pred cCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccC----------hHHHHHHHHHHHhhhhhhhh---ccccchhh
Confidence 456679999999999999999999999999887655432 22338999999999996543 55666677
Q ss_pred eeEeec--------ceEEEEeeccceEEEEecCccccCCCCCC-CCChhHHHHHHHcCCeee-cCeecCeeeeccccCCC
Q 022410 102 TAMIFG--------RFLMVANAGDCRAVLCRKGEAIDLSQDHR-PIYPSERRRVEELGGYVD-DGYLNGVLSVSRALGDW 171 (297)
Q Consensus 102 ~~~i~~--------~~l~ianvGDSr~~l~~~g~~~~lt~dh~-~~~~~e~~ri~~~g~~~~-~~~~~~~~~~traiG~~ 171 (297)
.+.+.. ..+++||+|+|.++++++|+-.++|+-.. ...++|.+||...+|.+. +++..|....||++|.+
T Consensus 615 ~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~ 694 (1081)
T KOG0618|consen 615 LCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPF 694 (1081)
T ss_pred heeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccc
Confidence 776653 47899999999999999999888887763 448999999999999999 78999999999999988
Q ss_pred ccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCe
Q 022410 172 DMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLNTFDNL 251 (297)
Q Consensus 172 ~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~~~DNi 251 (297)
... +.+.+.|++....+.+.|.|||+++-++|++++-+++.+.+ ++..+|-.+|.+|.+.|...|..||+
T Consensus 695 ~l~------P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~v----Rn~~dpL~AAkKL~d~AqSYgc~~nv 764 (1081)
T KOG0618|consen 695 SLF------PHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAV----RNVEDPLLAAKKLCDLAQSYGCAENV 764 (1081)
T ss_pred ccc------ccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHH----hcCCchHHHHHHHHHHHHhcccccCe
Confidence 754 58899999999999999999999999999999999999999 56789999999999999999999999
Q ss_pred EEEEEEccCC
Q 022410 252 TVIIVCFTSL 261 (297)
Q Consensus 252 Tvivi~l~~~ 261 (297)
+++||++...
T Consensus 765 ~vlVv~l~~~ 774 (1081)
T KOG0618|consen 765 SVLVVRLNHL 774 (1081)
T ss_pred eEEEEEeecc
Confidence 9999999654
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.81 E-value=1.1e-19 Score=154.32 Aligned_cols=167 Identities=23% Similarity=0.268 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHh------HhhcCCCCCC
Q 022410 23 KPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQAL------ADDCSVSSSS 96 (297)
Q Consensus 23 ~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l------~~~~~~~~~~ 96 (297)
++..+++||||+||...++.+|+.+++.+.+.+.......... .....++.+...+...+ ..........
T Consensus 22 ~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (212)
T PF13672_consen 22 DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPS----SIEALIRAIKKEILSIVRAFQSAKQADLELRDY 97 (212)
T ss_dssp CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHH----HHHHHHHHHHHHHHHHH----HHHHHSGGGTT-
T ss_pred CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchH----HHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Confidence 4556779999999888888888888887776655433221111 01222222222222111 1112233678
Q ss_pred CCeEEeeEeecceEEEEeeccceEEE-EecCccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccCC
Q 022410 97 GTTALTAMIFGRFLMVANAGDCRAVL-CRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMKL 175 (297)
Q Consensus 97 GtT~~~~~i~~~~l~ianvGDSr~~l-~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~~ 175 (297)
+||++++++.++.++++|+||||+|+ .++|++..++.+|+ .+..+ .|+.+....
T Consensus 98 ~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~----~~~~~------------------~~~~~~~~~--- 152 (212)
T PF13672_consen 98 GTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHS----GEYPN------------------QTRSLTGDD--- 152 (212)
T ss_dssp EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---B----HHHHH------------------CTTSCCHHC---
T ss_pred CceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCcc----chhhh------------------hhhccCccc---
Confidence 99999999999999999999999965 57899999999996 11111 133333221
Q ss_pred CCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHH-HHHHHHHHHh
Q 022410 176 PRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQH-AVSLVLRGLR 226 (297)
Q Consensus 176 ~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~e-i~~~l~~~~~ 226 (297)
.....++..+++.+++.+| |||||||+.+.+.+ +..++...+.
T Consensus 153 -------~~~~~~~~~~~~~~~d~il-L~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 153 -------PEPDVQYGSIPLEEGDVIL-LCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp -------CCTETEEEEEE--TT-EEE-EE-HHHHTTS-HHHHHHHH------
T ss_pred -------cccCCeEEEEEcCCCCEEE-EECcCccccCCCHHHHHHHhhhccc
Confidence 0223467778888999655 99999999998655 6667655433
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.72 E-value=3e-16 Score=155.37 Aligned_cols=180 Identities=19% Similarity=0.183 Sum_probs=133.5
Q ss_pred ccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhHhhcCCCCCCCC
Q 022410 19 FKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALADDCSVSSSSGT 98 (297)
Q Consensus 19 ~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~Gt 98 (297)
+..+++..+++|+||+|....|..++..+.+.+.+...... . ...++..+|..+.... ...+.+
T Consensus 574 ~~l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~----------~----~~~ai~~lN~~L~~~~--~~~~fa 637 (764)
T TIGR02865 574 GKLSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF----------D----REVAIKTVNSILSLRS--TDEKFS 637 (764)
T ss_pred EEECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC----------C----HHHHHHHHHHHHHhCC--CCCeEE
Confidence 45567778899999999777777888888888876543221 1 2567777777765432 245689
Q ss_pred eEEeeEee--cceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccCCC
Q 022410 99 TALTAMIF--GRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMKLP 176 (297)
Q Consensus 99 T~~~~~i~--~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~~~ 176 (297)
|+.+++++ .+++.++|+|+++.|+.|++++.+++..+-| +|-..
T Consensus 638 Tl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------------------------lGil~---- 683 (764)
T TIGR02865 638 TLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------------------------IGILD---- 683 (764)
T ss_pred EEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------------------------eEecc----
Confidence 99999996 7899999999999999999988877654421 23222
Q ss_pred CCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcC---CC
Q 022410 177 RGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQH-----AVSLVLRGLRRHDDPEQCARDLVMEALRLN---TF 248 (297)
Q Consensus 177 ~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~e-----i~~~l~~~~~~~~~~~~~a~~L~~~a~~~~---~~ 248 (297)
..+++....++.+||. |||+|||++|..++.+ +.+++.. ....+|+++++.|++.+.+.. ..
T Consensus 684 -------~~~~~~~~~~L~~GD~-Lll~SDGv~E~~~~~~~~~~~l~~~l~~--~~~~~p~ela~~Il~~a~~~~~~~~~ 753 (764)
T TIGR02865 684 -------EVDVELVRKKLKNGDL-IVMVSDGVLEGEKEVEGKVLWLVRKLKE--TNTNDPEEIAEYLLEKAKELRSGKIK 753 (764)
T ss_pred -------CCccceEEEEeCCCCE-EEEECCCCCcCCcccccHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 3456778889999995 5599999999876433 5555532 234689999999999998653 47
Q ss_pred CCeEEEEEEc
Q 022410 249 DNLTVIIVCF 258 (297)
Q Consensus 249 DNiTvivi~l 258 (297)
||+|++++++
T Consensus 754 DD~Tvlvirv 763 (764)
T TIGR02865 754 DDMTVIVAKV 763 (764)
T ss_pred CCeEEEEEEe
Confidence 9999999987
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.64 E-value=4.8e-14 Score=117.80 Aligned_cols=178 Identities=22% Similarity=0.230 Sum_probs=119.3
Q ss_pred CCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhHhhcCCCCCCCCeEEe
Q 022410 23 KPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALADDCSVSSSSGTTALT 102 (297)
Q Consensus 23 ~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~GtT~~~ 102 (297)
++..+++|+|++|..-.|.+.+..+...+........ . ..+.+..+|+.+....... ...+|+++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~----------~----p~~~l~~ln~~l~~~~~~~-~~~~t~~~ 66 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL----------D----PEELLEALNRRLYRDLKGD-NRYATACY 66 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT----------S----HHHHHHHHHHHHHHHTTTT-STTEEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC----------C----HHHHHHHHHHHHHHHhhhc-cccceEEE
Confidence 4667899999999666666666666666665542222 1 4566667777774443211 36788888
Q ss_pred eEee--cceEEEEeeccceEEEEecC--ccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccCCCCC
Q 022410 103 AMIF--GRFLMVANAGDCRAVLCRKG--EAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMKLPRG 178 (297)
Q Consensus 103 ~~i~--~~~l~ianvGDSr~~l~~~g--~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~~~~~ 178 (297)
+.++ .+.++++|+|++++++++++ ....+.... ..+|...
T Consensus 67 ~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~------------------------------~~lG~~~------ 110 (193)
T PF07228_consen 67 AIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEG------------------------------PPLGIFE------ 110 (193)
T ss_dssp EEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSS------------------------------BBCSSSC------
T ss_pred EEecccceEEEEeCCCCCCEEEEeccccceeecccCc------------------------------cceeeec------
Confidence 8876 67899999999999999993 333332222 1245433
Q ss_pred CCCCcccCceeEEEEecCCCeEEEEEcCccccccChH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCC
Q 022410 179 SSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQ-------HAVSLVLRGLRRHDDPEQCARDLVMEALRL---NTF 248 (297)
Q Consensus 179 ~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~-------ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~---~~~ 248 (297)
...+....+++++||+ |+|+||||++....+ ++.+++... ...+++++++.+++.+... ...
T Consensus 111 -----~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (193)
T PF07228_consen 111 -----DIDYQEQEIQLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLR 182 (193)
T ss_dssp -----TTCEEEEEEE--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTS
T ss_pred -----cccccceEEEeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 3456777899999996 459999999998433 234444321 4467999999999998873 478
Q ss_pred CCeEEEEEEcc
Q 022410 249 DNLTVIIVCFT 259 (297)
Q Consensus 249 DNiTvivi~l~ 259 (297)
||+|+++++++
T Consensus 183 DD~tvl~~~~~ 193 (193)
T PF07228_consen 183 DDITVLVIRRQ 193 (193)
T ss_dssp S-EEEEEEEE-
T ss_pred CceEEEEEEEC
Confidence 99999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.98 E-value=6.8e-08 Score=88.89 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=123.5
Q ss_pred CccCCCCceEEEEEcCCC-chHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhHhhcCCCCCC
Q 022410 18 CFKFPKPNAFYGVFDGHG-GPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALADDCSVSSSS 96 (297)
Q Consensus 18 ~~~~~~~~~l~~V~DG~G-G~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~ 96 (297)
.+..++....++|.|.+| |..++-. +......+........ .. ..+.++..|+.+...... .+
T Consensus 168 ~~~~~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~---------~~----p~~~l~~~n~~~~~~~~~--~~ 231 (367)
T COG2208 168 FIQLGEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGP---------LD----PADVLETLNRVLKQNLEE--DM 231 (367)
T ss_pred EEEECCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhccc---------CC----HHHHHHHHHHHHHhcccC--Cc
Confidence 345555677899999999 7776666 4444444433222111 01 234555666666554322 27
Q ss_pred CCeEEeeEee--cceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccC
Q 022410 97 GTTALTAMIF--GRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMK 174 (297)
Q Consensus 97 GtT~~~~~i~--~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~ 174 (297)
-+|+..++++ ...+..+|+|--..++++.++......-+. ....+|..+
T Consensus 232 f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~---------------------------~g~piG~~~-- 282 (367)
T COG2208 232 FVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTA---------------------------LGLPIGLLP-- 282 (367)
T ss_pred EEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccC---------------------------CCceeeecC--
Confidence 7888888887 779999999999999998854321111111 234566554
Q ss_pred CCCCCCCCcccCceeEEEEecCCCeEEEEEcCcccc-------ccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--
Q 022410 175 LPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWD-------VMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRL-- 245 (297)
Q Consensus 175 ~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d-------~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~-- 245 (297)
...+.+...++++|| .|||.||||.+ .+..+....++.. ....+++++++.+.+...+.
T Consensus 283 ---------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~~l~~~~~ 350 (367)
T COG2208 283 ---------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILESLEELQG 350 (367)
T ss_pred ---------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhC
Confidence 556778889999999 56699999999 4556666777654 34578888888888877664
Q ss_pred --CCCCCeEEEEEEcc
Q 022410 246 --NTFDNLTVIIVCFT 259 (297)
Q Consensus 246 --~~~DNiTvivi~l~ 259 (297)
...||+|++++++.
T Consensus 351 ~~~~~DDiTll~lk~~ 366 (367)
T COG2208 351 DQIQDDDITLLVLKVK 366 (367)
T ss_pred CccccCceEEEEEEec
Confidence 34688999999975
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=90.17 E-value=2.8 Score=37.46 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=58.4
Q ss_pred ccCCCCCccCCCCceEEEEEc--CCCch--HHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHhHHhH
Q 022410 12 SSHLGPCFKFPKPNAFYGVFD--GHGGP--EAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYLMADQALA 87 (297)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~V~D--G~GG~--~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~l~ 87 (297)
.....+++.++++...|.++| ||||+ .++-.....+...+........... ....+.+..+|+.+.
T Consensus 150 ~GD~~d~~~l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~----------~~p~~~l~~lN~~l~ 219 (303)
T PRK10693 150 PGLVLDIAALSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRL----------PELGALLKQVNHLLR 219 (303)
T ss_pred CccEEeeeecCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhccccccc----------CCHHHHHHHHHHHHH
Confidence 333344677778888888877 65544 4444444434445544321111000 013556667777766
Q ss_pred hhcCCCCCCCCeEEeeEee--cceEEEEeeccceEEEEecCc
Q 022410 88 DDCSVSSSSGTTALTAMIF--GRFLMVANAGDCRAVLCRKGE 127 (297)
Q Consensus 88 ~~~~~~~~~GtT~~~~~i~--~~~l~ianvGDSr~~l~~~g~ 127 (297)
+... ...-|+..++++ .+.+.+++.|-...++..+++
T Consensus 220 ~~~~---~~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~ 258 (303)
T PRK10693 220 QANL---PGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQ 258 (303)
T ss_pred hcCC---CceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeE
Confidence 5421 112577777777 568999999999988543343
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=57.05 E-value=6.9 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=17.2
Q ss_pred cCCCeEEEEEcCccccccChHHHH
Q 022410 195 TEGDEFLIIGCDGIWDVMSSQHAV 218 (297)
Q Consensus 195 ~~gd~~LvL~SDGv~d~l~~~ei~ 218 (297)
.+|.++| +++||+|=.+....+.
T Consensus 25 ~~G~Rll-va~nGv~lEv~r~WL~ 47 (72)
T PF09436_consen 25 RPGHRLL-VASNGVFLEVRRPWLH 47 (72)
T ss_pred cCCcEEE-EecCcEEEEEechHHH
Confidence 3788887 7999999766655443
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=45.42 E-value=14 Score=26.92 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=33.2
Q ss_pred EEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCeE
Q 022410 192 MVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLNTFDNLT 252 (297)
Q Consensus 192 ~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~~~DNiT 252 (297)
.-+.++|.++ |+.|||+-.+...+..+-+. .+| .-+-.|-+....||-.+.++
T Consensus 20 ~~l~~~D~vl-L~qdGV~aAl~~~~~~~sl~------~~p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 20 RLLTEGDAVL-LLQDGVYAALKGNRYLASLR------ESP-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred HHhcccCeEE-EEcccchhhhcCcHHHHHHh------cCc-cceeeehhhHHhccchhhcC
Confidence 3467899766 99999999998877666552 222 22344445555565444333
No 23
>PRK13845 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=32.17 E-value=2.8e+02 Score=26.26 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCchH---HHHHHHHHHHHHHHhcc
Q 022410 24 PNAFYGVFDGHGGPE---AAAYIRKNVMRFLFEDV 55 (297)
Q Consensus 24 ~~~l~~V~DG~GG~~---~a~~as~~~~~~l~~~~ 55 (297)
+..=.+||||+.|.- ..+=+++.+.+.|++.+
T Consensus 320 G~~DVVVcDGFtGNV~LKt~EG~a~~i~~~LK~~l 354 (437)
T PRK13845 320 GDFDVVVCDGFTGNVLLKFLESVGSVLLDVLRAEL 354 (437)
T ss_pred CCCCEEEeCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344479999999874 45555666677776654
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.13 E-value=88 Score=16.78 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=16.7
Q ss_pred eEeecceEEEEeeccceEEEE
Q 022410 103 AMIFGRFLMVANAGDCRAVLC 123 (297)
Q Consensus 103 ~~i~~~~l~ianvGDSr~~l~ 123 (297)
++-.++.+|++-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 444788999999999988754
No 25
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=28.88 E-value=2.6e+02 Score=21.27 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=47.7
Q ss_pred EEcCccccccChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCCCeEEEEEEccCCCCCCC
Q 022410 203 IGCDGIWDVMSSQHAVSLVLRGLRRH--DDPEQCARDLVMEALRLNTFDNLTVIIVCFTSLDHREP 266 (297)
Q Consensus 203 L~SDGv~d~l~~~ei~~~l~~~~~~~--~~~~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~~~~~ 266 (297)
..||=+-|.+.-.++.+.+...+... .-.+..|+.+.+..+.+ ...++.+=|++.++..+.+
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~--~~~v~~~~v~v~KP~ap~~ 106 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLAR--FPRVELVEVKVTKPKAPIP 106 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhh--CCccEEEEEEEECCCCCCC
Confidence 46888999999999998888776544 34677888888888775 3788888888888755544
No 26
>PRK15322 invasion protein OrgB; Provisional
Probab=28.29 E-value=2.7e+02 Score=23.35 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=38.3
Q ss_pred EEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 022410 192 MVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDD-PEQCARDLVMEALR 244 (297)
Q Consensus 192 ~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~-~~~~a~~L~~~a~~ 244 (297)
+..-.+.+|| +||+----.+++++.++.....+....+ ....|+.|-+.+++
T Consensus 142 i~yhd~~rFV-~~~g~qIaEFsPq~~v~~a~~~l~~~~d~~~~~~r~ls~~~l~ 194 (210)
T PRK15322 142 LKYHQEQRFI-MSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAIN 194 (210)
T ss_pred EEEcCCCceE-EEeCCchhccCHHHHHHHHHHHHHhCccchHHHHHHHhHHHHH
Confidence 4555667788 7888877889999988877776655554 77788877776654
No 27
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=27.82 E-value=63 Score=27.80 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEEccCCCCCCCCCcccCCcccccCChh
Q 022410 235 ARDLVMEALRLNTFDNLTVIIVCFTSLDHREPSPPRQRRMRCCSLSAE 282 (297)
Q Consensus 235 a~~L~~~a~~~~~~DNiTvivi~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (297)
..+|+..+...-..|||||+++.-.....+.+.++.......++|.-.
T Consensus 167 IK~LV~nSv~gL~YenISVVl~~~~~~~~~~~~~~~~~~~~~~~w~~~ 214 (246)
T COG4669 167 IKRLVANSVPGLQYENISVVLVPASDSDPAIPGPRALEPVFAVQWAML 214 (246)
T ss_pred HHHHHHhccCCCchhceEEEEeecccccccccCccccCCceeEEEEee
Confidence 356677777777889999999999888888777777666666655443
No 28
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=26.95 E-value=3.6e+02 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCchH---HHHHHHHHHHHHHHhcc
Q 022410 25 NAFYGVFDGHGGPE---AAAYIRKNVMRFLFEDV 55 (297)
Q Consensus 25 ~~l~~V~DG~GG~~---~a~~as~~~~~~l~~~~ 55 (297)
..=.+||||..|.- ..+=+++.+.+.+++.+
T Consensus 209 ~~DVvV~DGf~GNv~LK~~EG~~~~~~~~lk~~~ 242 (322)
T TIGR00182 209 VCDVLVCDGFTGNVVLKTMEGVAKTILSILKDEY 242 (322)
T ss_pred CCCEEEcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34479999998874 34445666666666544
No 29
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=25.14 E-value=2.3e+02 Score=19.35 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=30.9
Q ss_pred cChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCeEEEEEE
Q 022410 212 MSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLNTFDNLTVIIVC 257 (297)
Q Consensus 212 l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~~~DNiTvivi~ 257 (297)
..+.++..++.+.+.. .++...++.|...+.+.-+. +..||+-.
T Consensus 6 Cn~~~L~~ii~~~~~~-~~~~~s~~~Iq~~~e~~f~~-~f~vIcs~ 49 (76)
T PF04155_consen 6 CNSEELRKIILKNMKE-CNLSISKRAIQKAAEKRFGG-SFEVICSE 49 (76)
T ss_pred cCCHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC-CEEEEEeC
Confidence 3467788888877654 77888888887777665333 77777654
No 30
>PHA02754 hypothetical protein; Provisional
Probab=22.37 E-value=67 Score=20.98 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=15.7
Q ss_pred cCCCeEEEEEcCccccccCh
Q 022410 195 TEGDEFLIIGCDGIWDVMSS 214 (297)
Q Consensus 195 ~~gd~~LvL~SDGv~d~l~~ 214 (297)
.+||+++|+.+||+-=.++.
T Consensus 42 ~SGdkIVVi~aD~I~i~ls~ 61 (67)
T PHA02754 42 TSGDKIVVITADAIKIELSE 61 (67)
T ss_pred ecCCEEEEEEcceEEEEEEe
Confidence 57898999999998655543
No 31
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=22.20 E-value=1.5e+02 Score=28.82 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=70.5
Q ss_pred cceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCeecCeeeeccccCCCccCCCCCCCCCcccC
Q 022410 107 GRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGYLNGVLSVSRALGDWDMKLPRGSSSPLIAE 186 (297)
Q Consensus 107 ~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~~~~~~~~traiG~~~~~~~~~~~~~i~~~ 186 (297)
++.+|-.-+||||.+--..|+...-+.-|.- .| -| +| - .++.++
T Consensus 474 gne~y~i~~~dskff~ey~gksfs~~sfhah---k~------yg-----------------i~--l--------i~v~p~ 517 (1087)
T KOG3193|consen 474 GNEMYQIKVQDSKFFCEYVGKSFSSTSFHAH---KE------YG-----------------IG--L--------IAVSPD 517 (1087)
T ss_pred CCeEEEEEecccceeeeecccccchhhhhhh---hh------cC-----------------eE--E--------EEEcCC
Confidence 5688889999999887777766555555540 00 00 00 0 112334
Q ss_pred ceeEEEEecCCCeEEEEEcCcccc-ccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCeEEEEEEccCCCCCC
Q 022410 187 PEFQQMVLTEGDEFLIIGCDGIWD-VMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLNTFDNLTVIIVCFTSLDHRE 265 (297)
Q Consensus 187 p~i~~~~l~~gd~~LvL~SDGv~d-~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~~~~ 265 (297)
-+...+.++||.+.++--+|-++= -++++|-.. +..+....-.+.|.-....-||--++|++...+.++
T Consensus 518 ~~~~~~~lnpg~~hi~~~~dt~yym~lt~ee~~t----------d~r~g~~s~~~~a~~a~t~a~i~tv~v~vp~sd~t~ 587 (1087)
T KOG3193|consen 518 GDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLT----------DFRKGIRSQQKRANVASTIANIGTVAVDVPRSDKTE 587 (1087)
T ss_pred CCcceeecCCCcccccCCCCeEEEEecccccchh----------hhhhhhhhhhhhhhhhhhhhcccceEEecCCCCCCc
Confidence 445577788887777566665552 133333111 111111112222333335667778888887776666
Q ss_pred CCCcccCCcccccCChhhhh
Q 022410 266 PSPPRQRRMRCCSLSAEALC 285 (297)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~ 285 (297)
-.-+.+.+++-.+.++.+|.
T Consensus 588 ~~grk~~~~~~~aa~~~hl~ 607 (1087)
T KOG3193|consen 588 LVGRKKKKRKEKAADEIHLI 607 (1087)
T ss_pred ccccccchhhhhccCceEEE
Confidence 55554444444444444443
No 32
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.64 E-value=4e+02 Score=22.96 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=22.1
Q ss_pred cceEEEEeeccceEEE--EecCccccCCCCCC
Q 022410 107 GRFLMVANAGDCRAVL--CRKGEAIDLSQDHR 136 (297)
Q Consensus 107 ~~~l~ianvGDSr~~l--~~~g~~~~lt~dh~ 136 (297)
.+++...---||.+.+ +|+|..+|.-.+|+
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 5677666667777665 68888888877786
No 33
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=21.35 E-value=2.1e+02 Score=19.84 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=26.7
Q ss_pred CeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022410 198 DEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCARDLVME 241 (297)
Q Consensus 198 d~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~ 241 (297)
+.++|+...| .+.-+++...|+..+....+..++++.|.++
T Consensus 16 ~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 16 DCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred CcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 3466566654 4555677777777777777777777766543
No 34
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=21.14 E-value=56 Score=27.16 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=31.7
Q ss_pred cCCCeEEEEEcCccccccChHHHHHHHHHHHhc-----------------CCCHHHHHHHHHHHHHhc
Q 022410 195 TEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRR-----------------HDDPEQCARDLVMEALRL 245 (297)
Q Consensus 195 ~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~-----------------~~~~~~~a~~L~~~a~~~ 245 (297)
++|.+|| +++||+|-.+....+.-+..-.-.. ..=+..+.+.++..|.+.
T Consensus 24 ~~g~r~~-~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 24 KPGHRFI-VAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred cCCcEEE-EecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 5689888 8999999888766655442211001 022356777888888764
No 35
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=20.36 E-value=6.2e+02 Score=22.98 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCchH---HHHHHHHHHHHHHHhccC
Q 022410 25 NAFYGVFDGHGGPE---AAAYIRKNVMRFLFEDVS 56 (297)
Q Consensus 25 ~~l~~V~DG~GG~~---~a~~as~~~~~~l~~~~~ 56 (297)
..=.+||||..|.- ..+=+++.+.+.|++.+.
T Consensus 222 ~~DVvV~DGftGNv~LK~~EG~~~~~~~~lk~~~~ 256 (334)
T PRK05331 222 TADVVVCDGFVGNVALKTSEGTAKMILSLLKEELK 256 (334)
T ss_pred CCCEEEECCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34478999999874 444456677777776543
No 36
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=20.02 E-value=3.8e+02 Score=19.91 Aligned_cols=58 Identities=14% Similarity=0.112 Sum_probs=42.1
Q ss_pred EEcCccccccChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCCCCeEEEEEEccCCC
Q 022410 203 IGCDGIWDVMSSQHAVSLVLRGLRR--HDDPEQCARDLVMEALRLNTFDNLTVIIVCFTSLD 262 (297)
Q Consensus 203 L~SDGv~d~l~~~ei~~~l~~~~~~--~~~~~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~ 262 (297)
-.||-+-+.++-..+.+.+...+.+ ....+..|..+.+..+.. .+.+.-+-+++.++.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~--~~~v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLED--YPKVSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHh--CCCceEEEEEEECCC
Confidence 4678888888888888888776543 346788899999988876 245556666666664
Done!