Query 022410
Match_columns 297
No_of_seqs 173 out of 1252
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 05:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022410.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022410hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa2 d.219.1.1 (A:2-296) Pr 100.0 4.3E-51 3.1E-55 361.1 22.4 253 1-262 35-294 (295)
2 d1txoa_ d.219.1.1 (A:) putativ 100.0 1E-41 7.4E-46 291.2 21.3 213 1-260 18-235 (235)
3 d1nbua_ d.96.1.3 (A:) 7,8-dihy 30.0 71 0.0051 21.1 7.1 56 204-262 43-100 (118)
4 d1dhna_ d.96.1.3 (A:) 7,8-dihy 20.1 1.1E+02 0.0082 20.0 7.9 58 204-263 44-103 (121)
5 d1dgna_ a.77.1.3 (A:) Iceberg 16.7 1E+02 0.0073 19.1 4.6 32 211-246 33-64 (89)
6 d2d1pc1 c.114.1.2 (C:1-95) tRN 14.7 12 0.00088 24.5 -0.7 27 194-221 21-47 (95)
7 d2hy5c1 c.114.1.2 (C:402-502) 14.4 36 0.0026 22.1 1.7 27 194-221 23-49 (101)
8 d2b3ga1 b.40.4.3 (A:3-114) Rep 14.0 92 0.0067 20.6 3.9 14 197-210 37-50 (112)
9 d1hq0a_ d.194.1.1 (A:) Type 1 12.9 69 0.0051 25.2 3.3 24 94-118 143-166 (295)
10 d1clia2 d.139.1.1 (A:171-345) 12.2 57 0.0042 23.6 2.5 20 193-212 4-23 (175)
No 1
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.3e-51 Score=361.10 Aligned_cols=253 Identities=33% Similarity=0.583 Sum_probs=217.4
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||+|++..++... .++..||||||||||+.+|++|++.+++.|.+.......... ...+.+.++|+++|.
T Consensus 35 ~ED~~~~~~~~~~~-------~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~al~~a~~ 105 (295)
T d1a6qa2 35 MEDAHTAVIGLPSG-------LESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGA--PSVENVKNGIRTGFL 105 (295)
T ss_dssp CCEEEEEEEEETTT-------EEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSS--CCHHHHHHHHHHHHH
T ss_pred ccCeeEEEcccCCC-------CCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHHHHHHHHHH
Confidence 89999987654321 235679999999999999999999999999775432221111 112578889999999
Q ss_pred HHhHHhHhhc---CCCCCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeecCe
Q 022410 81 MADQALADDC---SVSSSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDDGY 157 (297)
Q Consensus 81 ~~~~~l~~~~---~~~~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~~~ 157 (297)
.+++.+.... .....+|||++++++.++++|++|+||||+|+++++++++||.||++.++.|++||.+.||.+...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~~~~~lT~dH~~~~~~E~~Ri~~~gg~v~~~r 185 (295)
T d1a6qa2 106 EIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQR 185 (295)
T ss_dssp HHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTE
T ss_pred HHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecccceeeccccCcccHHHHhhHhhcCCcccccc
Confidence 9998876432 2337789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCeeeeccccCCCccCCCCCC---CCCcccCceeEEEEec-CCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHH
Q 022410 158 LNGVLSVSRALGDWDMKLPRGS---SSPLIAEPEFQQMVLT-EGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQ 233 (297)
Q Consensus 158 ~~~~~~~traiG~~~~~~~~~~---~~~i~~~p~i~~~~l~-~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~ 233 (297)
.++.+.+||+||+..+|..... ...+.+.|++..+++. +++.|||||||||||+++++|+.+++...+....+++.
T Consensus 186 ~~g~l~~tRa~Gd~~~k~~~~~~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~ 265 (295)
T d1a6qa2 186 VNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEK 265 (295)
T ss_dssp ETTTBSCSBCEECGGGSCCTTCCGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHH
T ss_pred cCCceeeeeccCcHHhhhccccCcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999865443 2568999999999985 55679999999999999999999999888788899999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEEccCCC
Q 022410 234 CARDLVMEALRLNTFDNLTVIIVCFTSLD 262 (297)
Q Consensus 234 ~a~~L~~~a~~~~~~DNiTvivi~l~~~~ 262 (297)
+|+.|++.|+.+++.||+|||||+|+..+
T Consensus 266 ~a~~Lv~~A~~~gs~DNiTvivv~~~~~~ 294 (295)
T d1a6qa2 266 VCNEVVDTCLYKGSRDNMSVILICFPNAP 294 (295)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEEEECTTSC
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeccCCC
Confidence 99999999999999999999999997653
No 2
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=1e-41 Score=291.24 Aligned_cols=213 Identities=22% Similarity=0.268 Sum_probs=176.2
Q ss_pred CCceEEeccCCccCCCCCccCCCCceEEEEEcCCCchHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 022410 1 MEDEHVCIDDLSSHLGPCFKFPKPNAFYGVFDGHGGPEAAAYIRKNVMRFLFEDVSFPQSSEEDDVFLEGVESSLRKAYL 80 (297)
Q Consensus 1 ~ED~~~~~~~~~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 80 (297)
|||++++. ..+|+|||||||+.+|++|++.+++.+.+.+..... ..+.+.|+++++
T Consensus 18 nEDa~~~~----------------~~l~~V~DG~GG~~~g~~as~~~~~~l~~~~~~~~~--------~~~~~~l~~~~~ 73 (235)
T d1txoa_ 18 NEDSVYAG----------------ARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPG--------GDLLAKLDAAVR 73 (235)
T ss_dssp CCEEEEEC----------------SSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCC--------SCHHHHHHHHHH
T ss_pred CCCccccC----------------CCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhccCc--------ccHHHHHHHHHH
Confidence 78888772 239999999999999999999999999886654432 356677888999
Q ss_pred HHhHHhHhhcCCC---CCCCCeEEeeEeecceEEEEeeccceEEEEecCccccCCCCCCCCChhHHHHHHHcCCeeec--
Q 022410 81 MADQALADDCSVS---SSSGTTALTAMIFGRFLMVANAGDCRAVLCRKGEAIDLSQDHRPIYPSERRRVEELGGYVDD-- 155 (297)
Q Consensus 81 ~~~~~l~~~~~~~---~~~GtT~~~~~i~~~~l~ianvGDSr~~l~~~g~~~~lt~dh~~~~~~e~~ri~~~g~~~~~-- 155 (297)
.+++.+.+..... ..+|||++++++.+++++++|+||||+|++|+|+++++|+||++ .+++...|.....
T Consensus 74 ~~~~~l~~~~~~~~~~~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~-----~~~~~~~g~~~~~~~ 148 (235)
T d1txoa_ 74 AGNSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTF-----VQTLVDEGRITPEEA 148 (235)
T ss_dssp HHHHHHHHHHHHCGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECSCCCBH-----HHHHHHTTSSCTTGG
T ss_pred HHHHHHHHHhhcccccccceeeeeeeeeccceeEEEecCCccEEEecCCEEEEecCCCcH-----HHHhhhhcccchhhh
Confidence 9998887554322 67899999999999999999999999999999999999999983 3344444433322
Q ss_pred CeecCeeeeccccCCCccCCCCCCCCCcccCceeEEEEecCCCeEEEEEcCccccccChHHHHHHHHHHHhcCCCHHHHH
Q 022410 156 GYLNGVLSVSRALGDWDMKLPRGSSSPLIAEPEFQQMVLTEGDEFLIIGCDGIWDVMSSQHAVSLVLRGLRRHDDPEQCA 235 (297)
Q Consensus 156 ~~~~~~~~~traiG~~~~~~~~~~~~~i~~~p~i~~~~l~~gd~~LvL~SDGv~d~l~~~ei~~~l~~~~~~~~~~~~~a 235 (297)
...+.+..+|+++|+.. ..|++..++++++|.| |||||||||+++++++.+++ . ..+++++|
T Consensus 149 ~~~~~~~~lt~~~g~~~------------~~pdi~~~~l~~~D~l-lL~SDGl~d~l~~~ei~~i~----~-~~~~~~~a 210 (235)
T d1txoa_ 149 HSHPQRSLIMRALTGHE------------VEPTLTMREARAGDRY-LLCSDGLSDPVSDETILEAL----Q-IPEVAESA 210 (235)
T ss_dssp GGCTTTTCBCCCBSSSC------------CCCEEEEEECCTTCEE-EEECHHHHTTSCHHHHHHHH----T-SSSHHHHH
T ss_pred hhccccchhhccccccc------------ccceEEEEecCCCCEE-EEcCcchhcCCCHHHHHHHH----h-CCCHHHHH
Confidence 23466777999998654 5799999999999965 59999999999999999987 2 36899999
Q ss_pred HHHHHHHHhcCCCCCeEEEEEEccC
Q 022410 236 RDLVMEALRLNTFDNLTVIIVCFTS 260 (297)
Q Consensus 236 ~~L~~~a~~~~~~DNiTvivi~l~~ 260 (297)
+.|++.|+++++.||+|||||++++
T Consensus 211 ~~Lv~~A~~~gs~DNiTvivv~l~~ 235 (235)
T d1txoa_ 211 HRLIELALRGGGPDNVTVVVADLEH 235 (235)
T ss_dssp HHHHHHHHHTTCCSCEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCEEEEEEEEeC
Confidence 9999999999999999999999864
No 3
>d1nbua_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Bacteria (Mycobacterium tuberculosis) [TaxId: 1773]}
Probab=29.99 E-value=71 Score=21.10 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=41.7
Q ss_pred EcCccccccChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCCCCeEEEEEEccCCC
Q 022410 204 GCDGIWDVMSSQHAVSLVLRGLRR--HDDPEQCARDLVMEALRLNTFDNLTVIIVCFTSLD 262 (297)
Q Consensus 204 ~SDGv~d~l~~~ei~~~l~~~~~~--~~~~~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~ 262 (297)
.||-+.+.++-.++.+.+...+.+ ..-.+..|..+.+..++... +.-+-|++.++.
T Consensus 43 ~~D~l~~tvdY~~l~~~i~~~~~~~~~~LlE~la~~I~~~i~~~~~---v~~v~v~i~K~~ 100 (118)
T d1nbua_ 43 NSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIADHVMDDQR---VHAVEVAVHKPQ 100 (118)
T ss_dssp HHCCGGGSCCHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHTSTT---CCEEEEEEECTT
T ss_pred cccccccCccHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccCC---ceEEEEEEECCC
Confidence 578898889888888888776543 35688999999999987643 555566666653
No 4
>d1dhna_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Staphylococcus aureus [TaxId: 1280]}
Probab=20.13 E-value=1.1e+02 Score=19.99 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=44.7
Q ss_pred EcCccccccChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCCCCeEEEEEEccCCCC
Q 022410 204 GCDGIWDVMSSQHAVSLVLRGLRRH--DDPEQCARDLVMEALRLNTFDNLTVIIVCFTSLDH 263 (297)
Q Consensus 204 ~SDGv~d~l~~~ei~~~l~~~~~~~--~~~~~~a~~L~~~a~~~~~~DNiTvivi~l~~~~~ 263 (297)
.+|-+-+.++-..+...+...+.+. .-.+..|..+.+..+.. ...++-+-|++.++.+
T Consensus 44 ~~D~l~~tidY~~~~~~i~~~~~~~~~~llE~la~~i~~~i~~~--~~~v~~v~v~i~Kp~a 103 (121)
T d1dhna_ 44 RTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQ--YNRVMETKVRITKENP 103 (121)
T ss_dssp HHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHHHHH--CTTEEEEEEEEEESSC
T ss_pred cccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHh--CCCccEEEEEEEeCCC
Confidence 6788889999999988887776533 57899999999988764 3467777777777643
No 5
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.66 E-value=1e+02 Score=19.06 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=23.4
Q ss_pred ccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 022410 211 VMSSQHAVSLVLRGLRRHDDPEQCARDLVMEALRLN 246 (297)
Q Consensus 211 ~l~~~ei~~~l~~~~~~~~~~~~~a~~L~~~a~~~~ 246 (297)
+++.++...+. ....+..+.++.|++....+|
T Consensus 33 Vlt~~e~e~I~----~~~~t~~~k~r~LLd~l~~kG 64 (89)
T d1dgna_ 33 VISQEDMNKVR----DENDTVMDKARVLIDLVTGKG 64 (89)
T ss_dssp CSCHHHHHHHH----TCCSSHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHH----hcCCCHHHHHHHHHHHHHhcC
Confidence 46677777765 344678889999999887765
No 6
>d2d1pc1 c.114.1.2 (C:1-95) tRNA 2-thiouridine synthesizing protein B, TusB {Escherichia coli [TaxId: 562]}
Probab=14.69 E-value=12 Score=24.47 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=20.1
Q ss_pred ecCCCeEEEEEcCccccccChHHHHHHH
Q 022410 194 LTEGDEFLIIGCDGIWDVMSSQHAVSLV 221 (297)
Q Consensus 194 l~~gd~~LvL~SDGv~d~l~~~ei~~~l 221 (297)
+.++|.+| |.-|||+-.+........+
T Consensus 21 ~~~~D~lL-LieDgV~~al~~~~~~~~l 47 (95)
T d2d1pc1 21 LSEGDELL-LLQDGVTAAVDGNRYLESL 47 (95)
T ss_dssp CCTTCEEE-ECGGGGGGGBTTCTTHHHH
T ss_pred cCCCCEEE-EEhhhhHHHHcCChHHHHH
Confidence 46789766 8999999988766555444
No 7
>d2hy5c1 c.114.1.2 (C:402-502) DsrH {Chromatium vinosum [TaxId: 1049]}
Probab=14.36 E-value=36 Score=22.12 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=19.9
Q ss_pred ecCCCeEEEEEcCccccccChHHHHHHH
Q 022410 194 LTEGDEFLIIGCDGIWDVMSSQHAVSLV 221 (297)
Q Consensus 194 l~~gd~~LvL~SDGv~d~l~~~ei~~~l 221 (297)
+.++|.+| |.-|||+-.+......+.+
T Consensus 23 ~~~~D~ll-Li~DgVy~a~~~~~~~~~~ 49 (101)
T d2hy5c1 23 ATEGASVL-LFEDGIYAALAGTRVESQV 49 (101)
T ss_dssp CCTTCEEE-ECGGGGGGGBTTSTTHHHH
T ss_pred cCCCCEEE-EehhhHHHHhcCCchHHHH
Confidence 35688655 8999999888776655554
No 8
>d2b3ga1 b.40.4.3 (A:3-114) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.00 E-value=92 Score=20.57 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.4
Q ss_pred CCeEEEEEcCcccc
Q 022410 197 GDEFLIIGCDGIWD 210 (297)
Q Consensus 197 gd~~LvL~SDGv~d 210 (297)
.++|-++.|||.+-
T Consensus 37 ~~RyR~~lSDG~~~ 50 (112)
T d2b3ga1 37 PPRYRLLMSDGLNT 50 (112)
T ss_dssp CCEEEEEEECSSEE
T ss_pred cceEEEEEECcchh
Confidence 46898899999963
No 9
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=12.85 E-value=69 Score=25.19 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.4
Q ss_pred CCCCCeEEeeEeecceEEEEeeccc
Q 022410 94 SSSGTTALTAMIFGRFLMVANAGDC 118 (297)
Q Consensus 94 ~~~GtT~~~~~i~~~~l~ianvGDS 118 (297)
..+|||.+++ +.++.+|+.|+|-+
T Consensus 143 ~LSGCT~v~A-~K~~~ly~~HtGts 166 (295)
T d1hq0a_ 143 NLSGCTTIVA-RKEGYIYKVHTGTT 166 (295)
T ss_dssp CBSSCEEEEE-EETTEEEEEEEEES
T ss_pred cccCcEEEEE-EcCCeEEEEEccCC
Confidence 4568888877 57899999999954
No 10
>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.16 E-value=57 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=17.0
Q ss_pred EecCCCeEEEEEcCcccccc
Q 022410 193 VLTEGDEFLIIGCDGIWDVM 212 (297)
Q Consensus 193 ~l~~gd~~LvL~SDGv~d~l 212 (297)
.+.+||.+|=|.|.|+|.+=
T Consensus 4 ~i~~GDviiGl~SsG~HSNG 23 (175)
T d1clia2 4 KVSDGDVLIALGSSGPHSNG 23 (175)
T ss_dssp TCCTTCEEEEEECSSSTTSS
T ss_pred ccCCCCEEEEecCCCCCcCh
Confidence 36789999999999999874
Done!