BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022411
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Anamorsin
Length = 176
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 59 SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 114
S D +LS + S L ++L EI+R+L+PGG + + + + + D K S L
Sbjct: 63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 122
Query: 115 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGSS 153
L L+G ++ + +Q + + P EV S + GKKP +++GSS
Sbjct: 123 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175
>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
Cytokine-Induced Apoptosis Inhibitor Anamorsin
Length = 182
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 59 SIDTVLS--ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGK 114
S D +LS + S L ++L EI+R+L+PGG + + + + + D K S L
Sbjct: 66 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSA 125
Query: 115 LLLAGFLDAQRIQLKSVVPAEVVS--------------FGVKGKKPTWKIGS 152
L L+G ++ + +Q + + P EV S + GKKP +++GS
Sbjct: 126 LTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGS 177
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 52 QLPVESFSIDTVLSISSSHELPG-DQLLEEISRVLKPGGTILI 93
LP E S D V ++ S H P + L E +RVL+PGGT+ I
Sbjct: 122 DLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAI 164
>pdb|3HNR|A Chain A, Crystal Structure Of A Probable Methyltransferase
Bt9727_4108 From Bacillus Thuringiensis Subsp. Northeast
Structural Genomics Consortium Target Id Bur219
Length = 220
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 44 ITQASSLS-QLPVESFSIDTVLSISSSHELPGDQ---LLEEISRVLKPGGTILIYKKLTS 99
IT+ LS ++P SIDT++S + H L D+ + + S++L GG I+ + +
Sbjct: 93 ITEGDFLSFEVPT---SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA 149
Query: 100 DKGDVDKAISA 110
D+ DK + A
Sbjct: 150 DQDAYDKTVEA 160
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--AISALEGKLLLAGFLDAQRIQLK 129
LP E I R L+ G +L K LT+D+ ++ A++ G LL+ F+ Q +
Sbjct: 97 LPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHR 156
Query: 130 SVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQ 167
V A+++ GV G+ ++ +SF I P+ + Q
Sbjct: 157 QV--ADMLDEGVIGEIRSF--AASFTIPPKPQGDIRYQ 190
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--AISALEGKLLLAGFLDAQRIQLK 129
LP E I R L+ G +L K LT+D+ ++ A++ G LL+ F+ Q +
Sbjct: 97 LPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHR 156
Query: 130 SVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQ 167
V A+++ GV G+ ++ +SF I P+ + Q
Sbjct: 157 QV--ADMLDEGVIGEIRSF--AASFTIPPKPQGDIRYQ 190
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--AISALEGKLLLAGFLDAQRIQLK 129
LP E I R L+ G +L + LT+D+ ++ A++ G LL+ F+ Q +
Sbjct: 97 LPAVLHAEWIDRALRAGKHVLAEEPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHR 156
Query: 130 SVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQ 167
V A+++ GV G+ ++ +SF I P+ + Q
Sbjct: 157 QV--ADMLDEGVIGEIRSF--AASFTIPPKPQGDIRYQ 190
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 30 DLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKP 87
D G+ + Q P++ + + S+D ++ + H D+ E+ RV +P
Sbjct: 68 DPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAXHWFDLDRFWAELRRVARP 127
Query: 88 GGTILIYKKLTSDKGDVDKAISALEGKL---LLAGFLDAQRIQLKS 130
G ++ +T VD + A+ +L LLA +R+ ++S
Sbjct: 128 GA---VFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVES 170
>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
Nucleomethylin
Length = 215
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS 99
DP++ ++Q+P+E S+D + S LEE +RVLKPGG +L +++S
Sbjct: 98 DPRVTV--CDMAQVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGG-LLKVAEVSS 154
Query: 100 DKGDVDKAISAL 111
DV + A+
Sbjct: 155 RFEDVRTFLRAV 166
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--AISALEGKLLLAGFLDAQRIQLK 129
LP E I R L+ G +L LT+D+ ++ A++ G LL+ F+ Q +
Sbjct: 97 LPAVLHAEWIDRALRAGKHVLAEAPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHR 156
Query: 130 SVVPAEVVSFGVKGKKPTWKIGSSFAIKKAPKSLAKLQ 167
V A+++ GV G+ ++ +SF I P+ + Q
Sbjct: 157 QV--ADMLDEGVIGEIRSF--AASFTIPPKPQGDIRYQ 190
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92
PQ+ +S +LP S D ++ I + + EE++RV+KPGG ++
Sbjct: 130 PQVTFCVASSHRLPFSDTSXDAIIRIYAPCKA------EELARVVKPGGWVI 175
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+ID V
Sbjct: 268 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTIDGV 309
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+ID V
Sbjct: 268 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTIDGV 309
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+ID V
Sbjct: 224 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTIDGV 265
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+ID V
Sbjct: 224 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTIDGV 265
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 195 GDCEVGSTRKACKNCICGRAEAEEKVEK 222
G CE+G++R C CG A EK K
Sbjct: 149 GWCEIGASRNPCDETYCGPAAESEKETK 176
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 195 GDCEVGSTRKACKNCICGRAEAEEKVEK 222
G CE+G++R C CG A EK K
Sbjct: 242 GWCEIGASRNPCDETYCGPAAESEKETK 269
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 41 PQIITQASSLSQLPVESFSIDTVL----------------SISSSHELPGDQLLEEISRV 84
PQ+ + + +L S S D VL ++SS DQ+L E+SRV
Sbjct: 89 PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV 148
Query: 85 LKPGGTIL 92
L PGG +
Sbjct: 149 LVPGGRFI 156
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 44 ITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92
+ QA + + +P+ S+ V+ + H +P ++L E RVLKPGG +L
Sbjct: 90 VVQADARA-IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 48 SSLSQLPVESFSIDTVL-SISSSHELPGDQLLEEISRVLKPGGTILI 93
+++ LP E S D + H ++ L+ + +VLKPGGTI +
Sbjct: 94 ANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS++ LP F+I+ V
Sbjct: 224 PTSAIANIQSDIG--ASENSDGEMVISCSSIASLPDIVFTINGV 265
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+I+ V
Sbjct: 224 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTINGV 265
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTV 63
P SA+ N D+G A E D +++ SS+ LP F+I+ V
Sbjct: 224 PTSAIANIQSDIG--ASENSDGEMVISCSSIDSLPDIVFTINGV 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,431,328
Number of Sequences: 62578
Number of extensions: 260805
Number of successful extensions: 843
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 835
Number of HSP's gapped (non-prelim): 25
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)