Query 022411
Match_columns 297
No_of_seqs 282 out of 1972
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4020 Protein DRE2, required 100.0 4.4E-43 9.6E-48 309.2 12.2 233 11-275 4-255 (257)
2 PF05093 CIAPIN1: Cytokine-ind 100.0 9.9E-38 2.1E-42 245.1 5.1 75 184-258 1-95 (100)
3 COG5636 Uncharacterized conser 100.0 1.1E-37 2.3E-42 273.0 3.6 236 8-258 3-266 (284)
4 COG2226 UbiE Methylase involve 99.4 5.5E-13 1.2E-17 121.6 8.8 98 6-103 51-164 (238)
5 PF01209 Ubie_methyltran: ubiE 99.3 1.5E-12 3.3E-17 118.4 5.3 80 20-99 76-157 (233)
6 PLN02232 ubiquinone biosynthes 99.2 4E-11 8.7E-16 102.8 10.2 77 22-98 3-84 (160)
7 PLN02233 ubiquinone biosynthes 99.2 1.1E-10 2.3E-15 107.8 9.3 95 5-99 72-186 (261)
8 KOG1540 Ubiquinone biosynthesi 99.2 8.9E-11 1.9E-15 107.2 8.1 84 16-99 130-218 (296)
9 PF08241 Methyltransf_11: Meth 99.1 4.4E-11 9.5E-16 91.0 4.0 76 16-93 19-95 (95)
10 PRK11873 arsM arsenite S-adeno 99.1 1.1E-09 2.5E-14 100.8 12.9 122 4-125 75-228 (272)
11 PLN02244 tocopherol O-methyltr 99.0 1.5E-09 3.2E-14 103.9 8.6 123 5-127 117-278 (340)
12 PLN02490 MPBQ/MSBQ methyltrans 98.9 4.9E-09 1.1E-13 100.5 8.8 140 7-148 114-283 (340)
13 PTZ00098 phosphoethanolamine N 98.9 5.9E-09 1.3E-13 96.3 8.8 121 5-126 51-201 (263)
14 KOG4300 Predicted methyltransf 98.8 6.8E-09 1.5E-13 92.4 7.4 94 17-110 100-197 (252)
15 TIGR02752 MenG_heptapren 2-hep 98.8 1.9E-08 4E-13 90.2 9.8 80 19-98 73-154 (231)
16 PLN02336 phosphoethanolamine N 98.7 3.9E-08 8.4E-13 97.7 9.9 108 18-125 291-412 (475)
17 PRK10258 biotin biosynthesis p 98.7 1.5E-08 3.2E-13 92.2 4.7 80 19-102 67-147 (251)
18 PLN02396 hexaprenyldihydroxybe 98.7 3.3E-08 7.3E-13 94.1 6.3 81 18-98 155-238 (322)
19 TIGR00740 methyltransferase, p 98.6 1.6E-07 3.5E-12 85.0 8.2 77 19-97 82-163 (239)
20 PRK11036 putative S-adenosyl-L 98.5 6.5E-08 1.4E-12 88.6 4.0 81 17-97 67-151 (255)
21 PRK15068 tRNA mo(5)U34 methylt 98.5 4.4E-07 9.6E-12 86.4 9.1 108 19-127 148-274 (322)
22 PRK08317 hypothetical protein; 98.5 4.5E-07 9.7E-12 80.3 8.5 121 5-125 18-174 (241)
23 PF13847 Methyltransf_31: Meth 98.5 2E-07 4.3E-12 78.5 5.1 81 16-97 28-112 (152)
24 PRK15451 tRNA cmo(5)U34 methyl 98.5 5.3E-07 1.2E-11 82.4 8.3 78 18-97 84-166 (247)
25 TIGR02072 BioC biotin biosynth 98.4 8.1E-07 1.8E-11 78.9 7.7 78 20-100 62-140 (240)
26 PRK00216 ubiE ubiquinone/menaq 98.4 2E-06 4.3E-11 76.6 10.2 77 21-97 81-160 (239)
27 smart00828 PKS_MT Methyltransf 98.4 6.9E-07 1.5E-11 79.6 6.9 108 18-126 25-143 (224)
28 PRK14103 trans-aconitate 2-met 98.4 3.4E-07 7.4E-12 83.7 4.6 73 18-97 55-128 (255)
29 PF13649 Methyltransf_25: Meth 98.3 4.7E-07 1E-11 71.0 3.5 73 17-89 25-101 (101)
30 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 5E-06 1.1E-10 73.2 10.1 76 21-97 69-145 (223)
31 TIGR00477 tehB tellurite resis 98.3 1.2E-06 2.7E-11 77.2 6.1 80 16-96 52-134 (195)
32 TIGR00452 methyltransferase, p 98.3 1.5E-06 3.3E-11 82.6 7.1 107 19-126 147-272 (314)
33 COG2227 UbiG 2-polyprenyl-3-me 98.3 3.9E-07 8.6E-12 82.9 2.8 84 15-98 80-164 (243)
34 PRK11207 tellurite resistance 98.3 1.6E-06 3.5E-11 76.6 6.4 79 16-95 52-134 (197)
35 PRK05785 hypothetical protein; 98.3 2E-06 4.3E-11 77.9 6.9 63 19-88 77-140 (226)
36 COG2521 Predicted archaeal met 98.2 2.2E-06 4.8E-11 77.8 6.4 96 42-146 186-287 (287)
37 PF12847 Methyltransf_18: Meth 98.2 2E-06 4.4E-11 67.8 4.9 79 16-95 25-111 (112)
38 PRK00121 trmB tRNA (guanine-N( 98.2 4.3E-06 9.3E-11 74.3 7.3 99 18-123 66-177 (202)
39 PRK00107 gidB 16S rRNA methylt 98.2 1.4E-05 3.1E-10 70.5 10.5 97 16-124 69-166 (187)
40 smart00138 MeTrc Methyltransfe 98.2 1.4E-06 2.9E-11 80.8 4.2 78 18-95 134-242 (264)
41 PF13489 Methyltransf_23: Meth 98.2 2.2E-06 4.7E-11 71.4 4.6 82 43-124 62-160 (161)
42 PRK04266 fibrillarin; Provisio 98.1 2.2E-05 4.8E-10 71.3 10.6 120 4-130 70-213 (226)
43 PRK01683 trans-aconitate 2-met 98.1 3.7E-06 8.1E-11 76.7 5.6 74 18-96 57-131 (258)
44 KOG3045 Predicted RNA methylas 98.1 6.3E-06 1.4E-10 75.9 6.8 79 42-125 211-289 (325)
45 PRK06922 hypothetical protein; 98.1 2.9E-06 6.3E-11 87.2 5.1 78 20-97 446-539 (677)
46 PRK11088 rrmA 23S rRNA methylt 98.1 3.5E-06 7.6E-11 78.0 5.2 71 19-99 115-185 (272)
47 TIGR02716 C20_methyl_CrtF C-20 98.1 1.4E-05 3.1E-10 75.0 9.0 74 21-97 178-256 (306)
48 PRK12335 tellurite resistance 98.1 7.2E-06 1.6E-10 76.6 6.2 80 16-96 142-224 (287)
49 TIGR00091 tRNA (guanine-N(7)-) 98.0 1.5E-05 3.3E-10 70.2 7.1 100 18-124 42-155 (194)
50 PF05148 Methyltransf_8: Hypot 98.0 6.9E-06 1.5E-10 73.6 4.9 78 43-125 106-183 (219)
51 PLN02336 phosphoethanolamine N 98.0 1.3E-05 2.9E-10 79.6 7.3 106 19-125 62-180 (475)
52 TIGR00537 hemK_rel_arch HemK-r 98.0 2.8E-05 6E-10 67.3 8.3 98 18-124 43-162 (179)
53 PF08242 Methyltransf_12: Meth 98.0 1.2E-06 2.6E-11 68.2 -0.6 75 17-91 21-99 (99)
54 TIGR00138 gidB 16S rRNA methyl 98.0 3E-05 6.5E-10 67.9 8.2 99 18-125 68-167 (181)
55 PRK05134 bifunctional 3-demeth 97.9 6.2E-05 1.3E-09 67.5 8.6 91 7-97 49-153 (233)
56 COG4106 Tam Trans-aconitate me 97.8 1.4E-05 3E-10 72.0 3.7 80 14-98 52-132 (257)
57 TIGR01983 UbiG ubiquinone bios 97.8 5E-05 1.1E-09 67.4 7.3 77 21-97 72-151 (224)
58 PLN03075 nicotianamine synthas 97.8 3.5E-05 7.6E-10 72.7 6.4 76 19-95 152-233 (296)
59 TIGR01177 conserved hypothetic 97.8 7.7E-05 1.7E-09 71.0 8.0 95 21-126 209-314 (329)
60 PTZ00146 fibrillarin; Provisio 97.8 0.0008 1.7E-08 63.4 14.6 126 4-131 130-275 (293)
61 PRK13942 protein-L-isoaspartat 97.7 0.00013 2.8E-09 65.3 7.5 86 5-95 75-176 (212)
62 KOG3010 Methyltransferase [Gen 97.7 3E-05 6.5E-10 70.8 3.0 78 21-98 60-140 (261)
63 TIGR02469 CbiT precorrin-6Y C5 97.6 0.0001 2.2E-09 58.7 5.7 76 18-95 45-122 (124)
64 KOG1270 Methyltransferases [Co 97.6 3.5E-05 7.5E-10 71.2 3.0 80 16-98 111-198 (282)
65 TIGR03534 RF_mod_PrmC protein- 97.6 0.0003 6.5E-09 63.4 8.9 99 18-125 113-239 (251)
66 PRK00377 cbiT cobalt-precorrin 97.6 0.00025 5.5E-09 62.5 7.7 97 19-125 68-167 (198)
67 PRK13944 protein-L-isoaspartat 97.6 0.00012 2.7E-09 65.0 5.7 73 18-95 99-173 (205)
68 PRK08287 cobalt-precorrin-6Y C 97.5 0.0003 6.4E-09 61.3 7.6 94 21-125 60-154 (187)
69 PRK11705 cyclopropane fatty ac 97.5 0.00015 3.2E-09 70.8 5.8 75 18-97 192-269 (383)
70 PRK06202 hypothetical protein; 97.5 0.00016 3.5E-09 65.1 5.5 76 19-98 91-169 (232)
71 PRK14967 putative methyltransf 97.5 0.00048 1E-08 61.8 8.5 79 18-97 61-161 (223)
72 PRK14968 putative methyltransf 97.5 0.00046 9.9E-09 59.2 7.8 98 19-124 48-170 (188)
73 KOG2940 Predicted methyltransf 97.5 8.2E-05 1.8E-09 67.7 3.1 80 21-101 100-180 (325)
74 TIGR02021 BchM-ChlM magnesium 97.5 0.00017 3.6E-09 64.4 5.1 74 18-94 79-157 (219)
75 PF08003 Methyltransf_9: Prote 97.4 0.00056 1.2E-08 64.7 8.5 88 42-130 166-270 (315)
76 PF03848 TehB: Tellurite resis 97.4 0.00021 4.6E-09 63.4 5.1 82 15-97 51-135 (192)
77 TIGR03587 Pse_Me-ase pseudamin 97.4 0.00023 5.1E-09 63.4 5.3 72 19-97 70-144 (204)
78 PF05401 NodS: Nodulation prot 97.4 0.00024 5.3E-09 63.2 5.1 77 19-97 68-148 (201)
79 PF02353 CMAS: Mycolic acid cy 97.4 0.00027 6E-09 65.9 5.5 91 4-97 60-168 (273)
80 TIGR00080 pimt protein-L-isoas 97.3 0.00072 1.6E-08 60.3 7.6 86 5-95 76-177 (215)
81 TIGR03840 TMPT_Se_Te thiopurin 97.3 0.00057 1.2E-08 61.4 6.6 81 16-96 56-153 (213)
82 PRK14121 tRNA (guanine-N(7)-)- 97.3 0.00043 9.4E-09 67.7 6.2 76 21-96 151-236 (390)
83 PRK11188 rrmJ 23S rRNA methylt 97.3 0.00087 1.9E-08 59.9 7.6 95 4-98 49-168 (209)
84 PRK09489 rsmC 16S ribosomal RN 97.2 0.00055 1.2E-08 65.9 5.6 78 18-97 222-305 (342)
85 KOG2361 Predicted methyltransf 97.1 0.0014 3.1E-08 60.0 6.9 83 43-125 128-235 (264)
86 TIGR03438 probable methyltrans 97.1 0.00096 2.1E-08 62.9 5.8 82 16-97 88-179 (301)
87 PRK09328 N5-glutamine S-adenos 97.1 0.0033 7.2E-08 57.6 9.1 98 19-125 135-260 (275)
88 KOG1541 Predicted protein carb 97.0 0.0029 6.2E-08 57.5 8.2 93 21-122 77-182 (270)
89 PRK07580 Mg-protoporphyrin IX 97.0 0.0012 2.5E-08 58.8 5.8 83 7-92 64-163 (230)
90 PRK15001 SAM-dependent 23S rib 97.0 0.0011 2.4E-08 64.6 6.0 78 18-96 254-341 (378)
91 cd02440 AdoMet_MTases S-adenos 97.0 0.002 4.4E-08 47.7 6.0 77 18-94 23-103 (107)
92 PRK00517 prmA ribosomal protei 96.9 0.0026 5.7E-08 58.2 7.4 90 19-125 145-236 (250)
93 PF13659 Methyltransf_26: Meth 96.9 0.00094 2E-08 52.9 3.5 80 17-96 24-116 (117)
94 PRK00312 pcm protein-L-isoaspa 96.9 0.004 8.6E-08 55.2 7.8 87 5-96 77-176 (212)
95 PF05175 MTS: Methyltransferas 96.9 0.0018 3.9E-08 55.8 5.4 78 19-97 58-142 (170)
96 PRK01581 speE spermidine synth 96.9 0.0065 1.4E-07 59.1 9.7 115 6-123 150-293 (374)
97 PRK13255 thiopurine S-methyltr 96.8 0.0026 5.6E-08 57.4 6.2 88 7-94 38-154 (218)
98 TIGR03533 L3_gln_methyl protei 96.8 0.007 1.5E-07 56.6 9.0 95 18-122 147-269 (284)
99 PRK14966 unknown domain/N5-glu 96.8 0.0072 1.6E-07 59.7 9.3 100 18-125 277-403 (423)
100 PRK10611 chemotaxis methyltran 96.7 0.0021 4.5E-08 60.6 4.8 54 41-94 204-261 (287)
101 COG2519 GCD14 tRNA(1-methylade 96.7 0.0086 1.9E-07 55.3 8.4 98 18-127 121-220 (256)
102 PRK13943 protein-L-isoaspartat 96.7 0.0049 1.1E-07 58.9 7.1 87 4-95 78-180 (322)
103 PLN02585 magnesium protoporphy 96.7 0.0055 1.2E-07 58.4 7.4 71 18-92 168-247 (315)
104 COG4123 Predicted O-methyltran 96.6 0.014 3.1E-07 53.8 9.4 104 17-128 69-195 (248)
105 PRK00811 spermidine synthase; 96.6 0.007 1.5E-07 56.6 7.4 90 6-95 76-191 (283)
106 PF05891 Methyltransf_PK: AdoM 96.6 0.0014 3.1E-08 59.1 2.6 108 18-125 80-199 (218)
107 TIGR00406 prmA ribosomal prote 96.6 0.005 1.1E-07 57.6 6.3 89 5-97 158-261 (288)
108 PF01135 PCMT: Protein-L-isoas 96.5 0.0084 1.8E-07 53.9 7.2 88 4-96 70-173 (209)
109 PF01739 CheR: CheR methyltran 96.5 0.0036 7.8E-08 55.7 4.7 55 41-95 118-175 (196)
110 PRK03612 spermidine synthase; 96.5 0.017 3.7E-07 58.6 10.0 116 5-124 296-440 (521)
111 TIGR00536 hemK_fam HemK family 96.5 0.01 2.2E-07 55.4 7.7 98 19-125 141-267 (284)
112 KOG1269 SAM-dependent methyltr 96.5 0.0055 1.2E-07 59.5 6.1 55 43-97 162-217 (364)
113 PRK10901 16S rRNA methyltransf 96.4 0.0076 1.7E-07 59.5 7.1 79 19-97 271-374 (427)
114 COG2230 Cfa Cyclopropane fatty 96.4 0.0049 1.1E-07 57.9 5.3 92 4-98 70-179 (283)
115 TIGR02081 metW methionine bios 96.4 0.0029 6.4E-08 55.4 3.5 61 21-87 41-104 (194)
116 PF00891 Methyltransf_2: O-met 96.4 0.023 5E-07 51.3 9.2 55 40-97 142-201 (241)
117 TIGR00438 rrmJ cell division p 96.4 0.016 3.4E-07 50.5 7.8 94 4-97 30-148 (188)
118 KOG1331 Predicted methyltransf 96.3 0.0032 6.9E-08 58.9 3.3 71 23-98 72-146 (293)
119 PRK14901 16S rRNA methyltransf 96.3 0.0092 2E-07 59.1 6.7 79 19-97 280-386 (434)
120 PRK07402 precorrin-6B methylas 96.3 0.0065 1.4E-07 53.3 5.0 77 18-97 66-144 (196)
121 PHA03411 putative methyltransf 96.3 0.01 2.2E-07 55.6 6.5 99 18-123 90-210 (279)
122 PRK11805 N5-glutamine S-adenos 96.2 0.01 2.2E-07 56.3 6.2 96 18-123 159-282 (307)
123 COG4627 Uncharacterized protei 96.1 0.0014 3.1E-08 56.3 0.1 55 43-97 31-88 (185)
124 TIGR00446 nop2p NOL1/NOP2/sun 96.1 0.011 2.4E-07 54.6 5.6 80 18-97 98-201 (264)
125 PRK14903 16S rRNA methyltransf 96.1 0.012 2.5E-07 58.4 6.1 80 18-97 264-368 (431)
126 COG2518 Pcm Protein-L-isoaspar 96.1 0.026 5.5E-07 50.8 7.7 87 5-96 71-170 (209)
127 TIGR00563 rsmB ribosomal RNA s 96.0 0.015 3.3E-07 57.4 6.8 80 18-97 264-370 (426)
128 PRK04457 spermidine synthase; 95.9 0.018 3.9E-07 53.3 6.3 78 20-97 94-179 (262)
129 PRK13256 thiopurine S-methyltr 95.9 0.012 2.7E-07 53.5 5.1 83 15-97 64-165 (226)
130 PRK14904 16S rRNA methyltransf 95.9 0.019 4.1E-07 57.1 6.7 79 18-97 277-379 (445)
131 PRK14902 16S rRNA methyltransf 95.8 0.02 4.3E-07 56.8 6.5 77 19-96 278-380 (444)
132 PF08704 GCD14: tRNA methyltra 95.7 0.061 1.3E-06 49.6 8.7 94 23-127 72-171 (247)
133 TIGR03704 PrmC_rel_meth putati 95.5 0.066 1.4E-06 49.2 8.4 94 19-122 113-235 (251)
134 COG0500 SmtA SAM-dependent met 95.5 0.071 1.5E-06 40.7 7.4 77 22-98 78-158 (257)
135 PRK01544 bifunctional N5-gluta 95.5 0.059 1.3E-06 54.6 8.7 96 20-124 166-290 (506)
136 COG2242 CobL Precorrin-6B meth 95.4 0.15 3.2E-06 45.2 9.8 92 19-121 61-154 (187)
137 PF03141 Methyltransf_29: Puta 95.4 0.012 2.5E-07 59.1 3.0 48 50-97 172-221 (506)
138 PLN02366 spermidine synthase 95.4 0.058 1.3E-06 51.3 7.6 91 5-95 90-206 (308)
139 TIGR00417 speE spermidine synt 95.3 0.079 1.7E-06 49.1 8.3 89 6-94 72-185 (270)
140 PF06080 DUF938: Protein of un 95.3 0.12 2.5E-06 46.5 8.9 42 56-97 99-143 (204)
141 COG1041 Predicted DNA modifica 95.1 0.097 2.1E-06 50.5 8.2 98 17-126 220-329 (347)
142 PF06859 Bin3: Bicoid-interact 95.0 0.0087 1.9E-07 48.5 0.8 36 59-94 1-43 (110)
143 PF07942 N2227: N2227-like pro 94.9 0.05 1.1E-06 50.8 5.7 87 40-126 143-241 (270)
144 COG1352 CheR Methylase of chem 94.9 0.048 1E-06 50.9 5.5 55 41-95 184-241 (268)
145 PF02390 Methyltransf_4: Putat 94.6 0.077 1.7E-06 47.0 5.8 93 24-123 49-156 (195)
146 PF11968 DUF3321: Putative met 94.5 0.082 1.8E-06 47.9 5.7 83 45-127 87-181 (219)
147 KOG1271 Methyltransferases [Ge 94.4 0.2 4.3E-06 44.6 7.8 99 19-125 94-203 (227)
148 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.4 0.15 3.3E-06 47.3 7.5 66 59-124 158-236 (256)
149 smart00650 rADc Ribosomal RNA 94.3 0.066 1.4E-06 45.8 4.6 75 18-95 37-113 (169)
150 KOG1975 mRNA cap methyltransfe 94.3 0.059 1.3E-06 51.6 4.5 86 12-97 133-239 (389)
151 PLN02781 Probable caffeoyl-CoA 94.2 0.053 1.1E-06 49.3 4.1 77 18-96 95-179 (234)
152 COG2813 RsmC 16S RNA G1207 met 94.1 0.12 2.6E-06 48.9 6.4 79 17-97 183-268 (300)
153 PF01170 UPF0020: Putative RNA 94.0 0.11 2.4E-06 45.3 5.4 74 21-95 66-150 (179)
154 COG4976 Predicted methyltransf 93.9 0.046 9.9E-07 50.1 3.0 115 9-127 128-265 (287)
155 PF05724 TPMT: Thiopurine S-me 93.9 0.16 3.4E-06 45.9 6.5 106 16-122 59-185 (218)
156 COG4798 Predicted methyltransf 93.7 0.34 7.3E-06 43.5 7.9 84 40-124 104-202 (238)
157 PF01269 Fibrillarin: Fibrilla 93.7 0.62 1.3E-05 42.5 9.8 124 3-132 70-217 (229)
158 PF07021 MetW: Methionine bios 93.7 0.06 1.3E-06 47.9 3.2 92 3-97 10-111 (193)
159 KOG2899 Predicted methyltransf 93.3 0.098 2.1E-06 48.3 3.9 41 54-94 161-208 (288)
160 COG2264 PrmA Ribosomal protein 93.2 0.28 6.1E-06 46.5 7.1 61 58-127 228-288 (300)
161 COG4122 Predicted O-methyltran 92.9 0.12 2.5E-06 47.0 3.9 81 16-98 84-169 (219)
162 PLN02672 methionine S-methyltr 92.9 0.41 8.8E-06 52.7 8.7 104 17-129 143-305 (1082)
163 KOG1709 Guanidinoacetate methy 92.5 0.21 4.6E-06 45.5 4.9 72 22-97 134-208 (271)
164 KOG2352 Predicted spermine/spe 92.4 0.27 5.9E-06 49.3 6.0 75 22-96 77-162 (482)
165 PRK13699 putative methylase; P 92.4 0.27 5.8E-06 44.6 5.5 72 45-124 4-93 (227)
166 PRK00536 speE spermidine synth 92.3 0.37 8.1E-06 44.9 6.5 88 26-124 104-196 (262)
167 KOG1661 Protein-L-isoaspartate 92.0 0.54 1.2E-05 42.6 6.7 71 21-96 113-194 (237)
168 PF06325 PrmA: Ribosomal prote 91.8 0.15 3.2E-06 48.3 3.2 108 4-125 159-281 (295)
169 PRK13168 rumA 23S rRNA m(5)U19 91.8 0.22 4.8E-06 49.5 4.6 95 19-124 322-421 (443)
170 PRK11783 rlmL 23S rRNA m(2)G24 91.7 0.48 1E-05 49.9 7.2 96 19-122 564-675 (702)
171 COG0220 Predicted S-adenosylme 91.6 0.4 8.7E-06 43.7 5.7 67 30-96 86-165 (227)
172 PF03291 Pox_MCEL: mRNA cappin 91.5 0.38 8.3E-06 46.2 5.8 76 22-97 91-188 (331)
173 PF05219 DREV: DREV methyltran 91.5 0.25 5.3E-06 46.0 4.2 39 57-95 149-188 (265)
174 PF03269 DUF268: Caenorhabditi 91.0 0.24 5.1E-06 43.1 3.4 70 57-126 61-144 (177)
175 PLN02823 spermine synthase 90.7 0.31 6.7E-06 47.0 4.3 87 8-94 105-219 (336)
176 PRK11524 putative methyltransf 90.7 0.23 4.9E-06 46.4 3.3 53 43-95 9-80 (284)
177 PF01564 Spermine_synth: Sperm 90.2 4 8.7E-05 37.4 11.1 91 6-96 76-192 (246)
178 PRK15128 23S rRNA m(5)C1962 me 89.9 1.1 2.4E-05 44.1 7.4 78 18-95 245-339 (396)
179 PHA03412 putative methyltransf 89.5 0.59 1.3E-05 43.0 4.9 68 18-90 78-158 (241)
180 PLN02476 O-methyltransferase 89.0 0.4 8.7E-06 45.0 3.5 75 20-96 147-229 (278)
181 PF03141 Methyltransf_29: Puta 88.9 0.37 8E-06 48.6 3.3 47 51-97 419-469 (506)
182 TIGR00479 rumA 23S rRNA (uraci 88.1 1.5 3.3E-05 43.2 7.2 87 7-95 293-396 (431)
183 PF05430 Methyltransf_30: S-ad 88.1 0.31 6.8E-06 40.2 1.9 71 42-123 32-107 (124)
184 PRK10909 rsmD 16S rRNA m(2)G96 87.6 1 2.3E-05 40.0 5.1 76 22-97 82-161 (199)
185 PF01861 DUF43: Protein of unk 87.3 4.5 9.8E-05 37.3 9.1 117 7-125 45-176 (243)
186 PLN02589 caffeoyl-CoA O-methyl 86.9 0.45 9.6E-06 43.9 2.4 76 19-96 107-191 (247)
187 COG1092 Predicted SAM-dependen 86.8 1.6 3.4E-05 43.0 6.3 113 7-121 218-360 (393)
188 PRK01544 bifunctional N5-gluta 86.4 1.7 3.7E-05 44.1 6.4 57 40-96 396-463 (506)
189 COG1889 NOP1 Fibrillarin-like 86.2 9.1 0.0002 34.7 10.1 123 3-131 73-218 (231)
190 PF01596 Methyltransf_3: O-met 85.7 0.35 7.7E-06 43.3 1.1 78 18-97 72-157 (205)
191 COG2890 HemK Methylase of poly 85.3 3.8 8.2E-05 38.4 7.8 95 18-123 136-259 (280)
192 COG0421 SpeE Spermidine syntha 85.2 0.96 2.1E-05 42.6 3.7 74 21-94 105-189 (282)
193 KOG3201 Uncharacterized conser 84.1 1.6 3.5E-05 38.2 4.3 63 55-123 99-162 (201)
194 PF03059 NAS: Nicotianamine sy 83.3 1.8 4E-05 40.6 4.7 72 24-95 154-230 (276)
195 PF12147 Methyltransf_20: Puta 83.2 7.5 0.00016 37.0 8.7 105 21-125 166-296 (311)
196 PRK03522 rumB 23S rRNA methylu 82.5 1.5 3.2E-05 41.5 3.8 78 18-97 197-276 (315)
197 PF02527 GidB: rRNA small subu 82.1 1.7 3.7E-05 38.2 3.9 74 40-122 97-170 (184)
198 PRK11933 yebU rRNA (cytosine-C 81.4 2.7 5.8E-05 42.4 5.4 73 23-95 145-242 (470)
199 KOG2798 Putative trehalase [Ca 80.3 3.5 7.6E-05 39.6 5.4 70 57-126 257-336 (369)
200 TIGR02085 meth_trns_rumB 23S r 79.0 5.1 0.00011 39.0 6.3 75 19-95 258-334 (374)
201 PF06962 rRNA_methylase: Putat 78.8 3.5 7.7E-05 34.9 4.5 75 23-97 6-94 (140)
202 PF09243 Rsm22: Mitochondrial 77.5 6.9 0.00015 36.4 6.5 97 21-124 63-165 (274)
203 PF11899 DUF3419: Protein of u 75.4 5.8 0.00013 38.9 5.6 58 41-98 275-337 (380)
204 PRK11783 rlmL 23S rRNA m(2)G24 75.3 7.3 0.00016 41.2 6.7 79 18-96 258-348 (702)
205 TIGR03439 methyl_EasF probable 74.9 7.5 0.00016 37.2 6.1 75 21-95 109-197 (319)
206 TIGR01053 LSD1 zinc finger dom 74.9 1.5 3.2E-05 27.6 0.8 13 236-248 3-26 (31)
207 PLN02668 indole-3-acetate carb 74.4 7.9 0.00017 38.1 6.2 74 54-127 157-278 (386)
208 COG3963 Phospholipid N-methylt 74.3 6.6 0.00014 34.6 5.0 60 38-97 91-158 (194)
209 PF08090 Enterotoxin_HS1: Heat 73.9 1.1 2.4E-05 28.2 0.1 19 232-250 7-28 (36)
210 KOG1663 O-methyltransferase [S 73.4 3.5 7.6E-05 37.8 3.3 82 11-95 93-183 (237)
211 PF10294 Methyltransf_16: Puta 71.2 7 0.00015 33.7 4.6 58 40-97 96-158 (173)
212 PRK14896 ksgA 16S ribosomal RN 71.0 13 0.00028 34.0 6.6 63 6-71 29-103 (258)
213 PRK01747 mnmC bifunctional tRN 68.8 8.4 0.00018 40.2 5.3 70 42-122 148-222 (662)
214 COG0742 N6-adenine-specific me 68.3 38 0.00082 30.1 8.5 93 6-98 43-157 (187)
215 KOG3178 Hydroxyindole-O-methyl 67.6 11 0.00025 36.4 5.5 53 41-97 221-277 (342)
216 PRK04338 N(2),N(2)-dimethylgua 67.2 6.4 0.00014 38.6 3.8 73 19-94 84-157 (382)
217 PF03492 Methyltransf_7: SAM d 66.9 16 0.00034 35.1 6.4 80 47-126 95-221 (334)
218 PF11253 DUF3052: Protein of u 66.0 24 0.00053 29.4 6.4 69 57-127 43-111 (127)
219 COG5459 Predicted rRNA methyla 65.7 16 0.00036 35.8 6.1 40 59-98 185-228 (484)
220 COG4262 Predicted spermidine s 64.9 16 0.00035 36.0 5.9 118 3-123 286-432 (508)
221 PF02475 Met_10: Met-10+ like- 64.8 17 0.00037 32.4 5.8 50 39-92 150-199 (200)
222 COG0357 GidB Predicted S-adeno 64.1 23 0.00049 32.1 6.5 111 7-125 68-193 (215)
223 COG0116 Predicted N6-adenine-s 64.0 12 0.00027 36.7 5.1 74 23-96 261-345 (381)
224 COG0144 Sun tRNA and rRNA cyto 63.7 12 0.00026 36.3 4.9 76 20-95 186-288 (355)
225 PF10672 Methyltrans_SAM: S-ad 63.4 7.4 0.00016 36.7 3.4 79 19-97 149-240 (286)
226 PF05185 PRMT5: PRMT5 arginine 62.8 19 0.00042 36.0 6.4 51 40-92 240-294 (448)
227 KOG2906 RNA polymerase III sub 62.8 3.1 6.8E-05 33.1 0.6 12 239-250 18-30 (105)
228 PF14740 DUF4471: Domain of un 61.6 16 0.00035 34.6 5.2 64 57-124 220-286 (289)
229 PF10354 DUF2431: Domain of un 60.2 29 0.00062 29.9 6.2 67 55-126 71-151 (166)
230 COG2520 Predicted methyltransf 58.6 24 0.00053 34.2 6.0 114 3-120 185-313 (341)
231 KOG1500 Protein arginine N-met 58.5 20 0.00042 35.1 5.2 66 26-92 209-279 (517)
232 TIGR00755 ksgA dimethyladenosi 58.2 13 0.00028 33.9 3.9 65 21-92 56-123 (253)
233 KOG1499 Protein arginine N-met 58.0 14 0.00031 35.8 4.2 66 27-92 93-164 (346)
234 TIGR00095 RNA methyltransferas 57.0 17 0.00036 31.9 4.3 89 7-95 50-159 (189)
235 PF01555 N6_N4_Mtase: DNA meth 56.0 7.4 0.00016 33.7 1.9 24 74-97 35-58 (231)
236 KOG3987 Uncharacterized conser 55.2 6.8 0.00015 35.8 1.5 39 57-95 167-207 (288)
237 PF13578 Methyltransf_24: Meth 55.1 5.4 0.00012 30.9 0.8 55 40-95 48-105 (106)
238 KOG2904 Predicted methyltransf 53.9 49 0.0011 31.5 6.9 81 16-96 172-286 (328)
239 PF13909 zf-H2C2_5: C2H2-type 53.0 5.5 0.00012 22.7 0.4 11 242-252 1-11 (24)
240 TIGR03601 B_an_ocin probable h 51.7 7.7 0.00017 28.9 1.0 11 237-247 55-65 (79)
241 PF06557 DUF1122: Protein of u 50.5 31 0.00068 30.0 4.7 70 75-147 66-141 (170)
242 PF03602 Cons_hypoth95: Conser 50.4 8 0.00017 33.9 1.2 91 7-97 43-155 (183)
243 KOG1596 Fibrillarin and relate 50.3 49 0.0011 31.0 6.2 94 3-97 153-263 (317)
244 KOG1542 Cysteine proteinase Ca 44.0 9 0.00019 37.2 0.5 9 234-242 175-184 (372)
245 PRK00274 ksgA 16S ribosomal RN 43.4 6.5 0.00014 36.4 -0.5 49 19-69 67-115 (272)
246 PF06943 zf-LSD1: LSD1 zinc fi 40.9 16 0.00036 21.8 1.1 9 241-249 16-24 (25)
247 PHA02826 IL-1 receptor-like pr 40.5 12 0.00026 33.9 0.7 27 241-269 16-42 (227)
248 COG3086 RseC Positive regulato 40.4 12 0.00026 32.0 0.6 9 232-240 21-29 (150)
249 PF05566 Pox_vIL-18BP: Orthopo 39.1 7.6 0.00017 31.5 -0.7 13 241-255 36-49 (126)
250 KOG3507 DNA-directed RNA polym 37.2 11 0.00023 27.3 -0.1 17 234-250 20-46 (62)
251 COG2813 RsmC 16S RNA G1207 met 36.4 94 0.002 29.7 6.0 39 59-97 37-75 (300)
252 KOG1122 tRNA and rRNA cytosine 35.5 98 0.0021 31.1 6.1 55 40-95 291-371 (460)
253 PF05484 LRV_FeS: LRV protein 35.2 21 0.00046 25.6 1.1 13 242-254 12-24 (57)
254 cd05565 PTS_IIB_lactose PTS_II 34.9 1.2E+02 0.0025 24.0 5.5 76 9-94 2-77 (99)
255 PRK09489 rsmC 16S ribosomal RN 34.2 48 0.001 31.9 3.8 40 58-97 75-114 (342)
256 COG4121 Uncharacterized conser 33.7 1.6E+02 0.0035 27.4 7.0 74 40-124 145-226 (252)
257 TIGR00308 TRM1 tRNA(guanine-26 32.1 72 0.0016 31.2 4.7 73 20-95 73-147 (374)
258 PF01558 POR: Pyruvate ferredo 31.9 87 0.0019 26.5 4.7 47 43-96 40-87 (173)
259 PRK10862 SoxR reducing system 31.5 24 0.00051 30.2 1.1 15 233-248 22-36 (154)
260 PHA01519 hypothetical protein 31.1 26 0.00056 28.5 1.2 20 248-267 21-40 (115)
261 PTZ00338 dimethyladenosine tra 31.0 27 0.00059 32.9 1.5 52 19-72 61-114 (294)
262 KOG1543 Cysteine proteinase Ca 31.0 18 0.00039 34.6 0.3 9 234-242 128-137 (325)
263 TIGR00853 pts-lac PTS system, 30.9 79 0.0017 24.6 3.9 73 8-90 4-76 (95)
264 PF01728 FtsJ: FtsJ-like methy 30.9 38 0.00083 28.8 2.3 41 58-98 90-142 (181)
265 KOG2915 tRNA(1-methyladenosine 30.4 2.1E+02 0.0046 27.3 7.2 76 39-127 155-235 (314)
266 COG2265 TrmA SAM-dependent met 29.6 1.8E+02 0.0039 29.1 7.0 94 18-121 317-414 (432)
267 TIGR00006 S-adenosyl-methyltra 29.2 54 0.0012 31.3 3.2 24 74-97 219-242 (305)
268 PF02384 N6_Mtase: N-6 DNA Met 28.9 1.1E+02 0.0024 28.3 5.3 78 43-122 107-208 (311)
269 PF08123 DOT1: Histone methyla 28.7 69 0.0015 28.6 3.6 53 40-92 100-155 (205)
270 COG0293 FtsJ 23S rRNA methylas 28.6 1.5E+02 0.0033 26.6 5.8 59 40-98 84-162 (205)
271 COG2093 DNA-directed RNA polym 28.6 14 0.0003 27.1 -0.7 10 247-256 21-30 (64)
272 COG0275 Predicted S-adenosylme 27.8 60 0.0013 31.1 3.2 24 74-97 223-246 (314)
273 PRK05031 tRNA (uracil-5-)-meth 27.8 68 0.0015 31.0 3.7 74 19-96 231-321 (362)
274 COG2263 Predicted RNA methylas 27.7 91 0.002 27.9 4.1 94 18-125 70-166 (198)
275 COG0541 Ffh Signal recognition 27.3 3.1E+02 0.0067 27.7 8.1 110 6-121 127-245 (451)
276 TIGR02143 trmA_only tRNA (urac 27.0 75 0.0016 30.6 3.8 83 9-95 200-311 (353)
277 PRK00050 16S rRNA m(4)C1402 me 25.1 71 0.0015 30.3 3.2 24 74-97 215-238 (296)
278 PF04672 Methyltransf_19: S-ad 25.0 2.4E+02 0.0052 26.4 6.6 56 43-98 123-193 (267)
279 cd02621 Peptidase_C1A_Cathepsi 24.3 27 0.00058 31.5 0.2 7 234-240 23-29 (243)
280 KOG1562 Spermidine synthase [A 23.6 1.3E+02 0.0027 29.0 4.5 56 40-95 174-236 (337)
281 KOG2846 Predicted membrane pro 23.4 61 0.0013 31.2 2.4 33 241-273 242-280 (328)
282 PF10058 DUF2296: Predicted in 23.3 43 0.00094 23.6 1.0 10 241-250 44-53 (54)
283 PF01795 Methyltransf_5: MraW 23.0 59 0.0013 31.1 2.2 24 74-97 220-243 (310)
284 KOG3420 Predicted RNA methylas 22.9 68 0.0015 27.8 2.3 50 21-70 76-125 (185)
285 PF08468 MTS_N: Methyltransfer 22.8 83 0.0018 26.8 2.9 41 57-97 67-107 (155)
286 PTZ00203 cathepsin L protease; 22.7 31 0.00068 33.4 0.3 7 234-240 144-150 (348)
287 cd02248 Peptidase_C1A Peptidas 22.6 34 0.00073 29.6 0.4 7 234-240 18-24 (210)
288 cd02620 Peptidase_C1A_Cathepsi 22.6 29 0.00063 31.3 0.0 7 234-240 22-28 (236)
289 PRK00432 30S ribosomal protein 22.4 46 0.001 23.0 1.0 9 241-249 37-45 (50)
290 COG4332 Uncharacterized protei 21.9 37 0.00079 30.1 0.5 14 233-246 16-33 (203)
291 PTZ00200 cysteine proteinase; 21.9 32 0.00069 34.6 0.2 7 234-240 252-259 (448)
292 KOG2539 Mitochondrial/chloropl 21.5 2.1E+02 0.0046 29.1 5.8 86 11-99 219-319 (491)
293 PRK00398 rpoP DNA-directed RNA 21.2 47 0.001 22.1 0.9 11 245-255 22-32 (46)
294 PF06283 ThuA: Trehalose utili 21.1 5.6E+02 0.012 22.3 8.8 38 58-95 51-88 (217)
295 PTZ00021 falcipain-2; Provisio 21.0 33 0.00072 34.9 0.1 7 234-240 284-290 (489)
296 cd05564 PTS_IIB_chitobiose_lic 20.8 1.6E+02 0.0035 22.7 3.9 77 9-95 1-78 (96)
297 smart00645 Pept_C1 Papain fami 20.6 34 0.00074 29.3 0.1 7 234-240 19-25 (174)
298 COG1064 AdhP Zn-dependent alco 20.6 49 0.0011 32.1 1.1 33 59-97 229-261 (339)
299 cd01098 PAN_AP_plant Plant PAN 20.2 29 0.00064 25.2 -0.4 9 203-211 38-47 (84)
No 1
>KOG4020 consensus Protein DRE2, required for cell viability [Function unknown]
Probab=100.00 E-value=4.4e-43 Score=309.23 Aligned_cols=233 Identities=29% Similarity=0.361 Sum_probs=148.1
Q ss_pred EEeecCCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCC
Q 022411 11 LALSEDKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (297)
Q Consensus 11 Lll~~~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (297)
|++.+. ..+.....+-...++.-.+... ...+..+.+....+ +.++||+.+... .|.....+....+..|+|+
T Consensus 4 l~~~l~-~~~~~~~~~~~K~~~~i~~~~ggdl~li~~~~~~~~t~--~~~~~e~~~~e~--a~~~~~~V~~l~~~~l~P~ 78 (257)
T KOG4020|consen 4 LLLCLT-GTTTSELAELLKAQALIKAVKGGDLFLINKVNGSVSTL--ENARYELLTPEA--ATLSGLKVKSLLRASLKPE 78 (257)
T ss_pred eeEEec-ccchhhHHHHHHhHHhhhcccCcchhheeccccccccc--cccceeccchhh--ccccccchhhhhhcccCcc
Confidence 334344 4445566665555554322211 23344445555544 478899554433 2333125666777899999
Q ss_pred cEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchhccccCc--cceeEeeeeecCCCCCCCCccccccCcc-----
Q 022411 89 GTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKSVVP--AEVVSFGVKGKKPTWKIGSSFAIKKAPK----- 161 (297)
Q Consensus 89 G~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~~--~~~~~~~i~akKP~~~~gs~~~~~~~~~----- 161 (297)
|.+.+.++... - ..+.....+.|+.++. |.++... +.+ |+.....|++.++.+.+
T Consensus 79 gtl~v~s~~g~----~----~~~l~~~~i~g~~~~~--~~s~d~~s~~ql--------kl~~~K~ss~~~q~a~k~~~~k 140 (257)
T KOG4020|consen 79 GTLSVLSHIGH----A----DDLLLFVKITGEKDYC--WISPDVSSANQL--------KLSITKKSSPSLQSASKNAAAK 140 (257)
T ss_pred ceEehhhhccc----h----hhHHHHHHHhCCcccc--ccCccccccccc--------cccceeccCcccccccccHHHH
Confidence 99998776421 1 1455567888888763 2222211 111 33333334433332221
Q ss_pred cccc-----cccCCCCCccCcCCCCCccccCCCCCCCCC-CCCCCCCccCCCCCccchHHHHHHHHhcCCCccccCCCCC
Q 022411 162 SLAK-----LQVDDDSDLIDEDTLLTEEDLKKPQLPSVG-DCEVGSTRKACKNCICGRAEAEEKVEKLGLTMDQLKNPQS 235 (297)
Q Consensus 162 ~~~~-----~~~ddd~dlIded~Ll~e~d~~~p~~~~~~-~C~~~~krkACknCtCGlaE~e~~~~~~~~~~~~~~~~~s 235 (297)
..|. +.+|.++|+||||+||+|||+.+|+..+.. .|++++||||||||||||||+||.|.. ......+++|
T Consensus 141 nl~s~sand~s~d~~~dlide~elldee~~~k~~~~~~~a~~~~~kKkkaCk~CtcGl~Ee~E~Eks---~~q~s~~~~s 217 (257)
T KOG4020|consen 141 NLWSLSANDMSDDLRQDLIDEEELLDEEDLKKPDPASLRASCSPGKKKKACKNCTCGLAEEEEKEKS---REQISSNPKS 217 (257)
T ss_pred HhhhhhccccccchhhhccChhhccCHhhcCCCCccccccCCCCcccchhhhcCCcccHHHHHhhhh---hhhhccCccc
Confidence 1222 223445799999999999999999887755 899999999999999999999997642 2233456999
Q ss_pred CCCcc----ccccCCCCCCCCCCCCCCCCCCCCceEeecCCcce
Q 022411 236 ACGMW----TWRCFPLRYMPLQGSASIQTGREGVTVKQLPRSRH 275 (297)
Q Consensus 236 sCGnC----AFRC~~CPYlGlPaF~~~~~~~~~~~~~~~~~~~~ 275 (297)
+|||| ||||+|||||||||||| |++|.+-+++-+
T Consensus 218 ~CGnCylGdaFrCs~CPylG~PafkP------Ge~v~ls~~~~~ 255 (257)
T KOG4020|consen 218 ACGNCYLGDAFRCSGCPYLGMPAFKP------GEKVLLSDNSDK 255 (257)
T ss_pred ccCcccccccceecCCCcCCCCCCCC------CCeEEecccccc
Confidence 99999 99999999999999985 466766555443
No 2
>PF05093 CIAPIN1: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; InterPro: IPR007785 Anamorsin, subsequently named CIAPIN1 for cytokine-induced anti-apoptosis inhibitor 1, in humans is the homologue of yeast Dre2, a conserved soluble eukaryotic Fe-S cluster protein, that functions in cytosolic Fe-S protein biogenesis. It is found in both the cytoplasm and in the mitochondrial intermembrane space (IMS) []. CIAPIN1 is found to be up-regulated in hepatocellular cancer, is considered to be a downstream effector of the receptor tyrosine kinase-Ras signalling pathway, and is essential in mouse definitive haematopoiesis []. In addition, it has also anti-apoptotic effects in the cell. It is involved in negative control of cell death upon cytokine withdrawal and promotes development of hematopoietic cells [].
Probab=100.00 E-value=9.9e-38 Score=245.10 Aligned_cols=75 Identities=44% Similarity=0.745 Sum_probs=61.5
Q ss_pred cccCCCCCCCCCCCCCC--CCccCCCCCccchHHHHHHHHhc---------CCCccc-----cCCCCCCCCcc----ccc
Q 022411 184 EDLKKPQLPSVGDCEVG--STRKACKNCICGRAEAEEKVEKL---------GLTMDQ-----LKNPQSACGMW----TWR 243 (297)
Q Consensus 184 ~d~~~p~~~~~~~C~~~--~krkACknCtCGlaE~e~~~~~~---------~~~~~~-----~~~~~ssCGnC----AFR 243 (297)
||+++|....+.+|+++ +||||||||||||||+|+++.+. +++.++ +.+++|||||| |||
T Consensus 1 eDlkkp~~~~~~~C~~~~~kkrrACKnCTCGlaE~~e~e~~~~~~~~~~~~~~~~~~l~e~~~~~~~ssCGsC~LGDAFR 80 (100)
T PF05093_consen 1 EDLKKPDLVSPKDCGPGCKKKRRACKNCTCGLAEEEEAEKKNARAAQQKALKFTEDELTEITVEGKKSSCGSCYLGDAFR 80 (100)
T ss_pred CCcccCCCcccccccCCccccccccccCCcchHHHhcchhhhhhhhhhhhcccccchhhhhhcccccCccccccccccce
Confidence 68999987777899976 78999999999999998765421 222223 34589999999 999
Q ss_pred cCCCCCCCCCCCCCC
Q 022411 244 CFPLRYMPLQGSASI 258 (297)
Q Consensus 244 C~~CPYlGlPaF~~~ 258 (297)
|+|||||||||||||
T Consensus 81 Ca~CPYlGlPaFkpG 95 (100)
T PF05093_consen 81 CAGCPYLGLPAFKPG 95 (100)
T ss_pred ecCCCcCCCCCCCCC
Confidence 999999999999976
No 3
>COG5636 Uncharacterized conserved protein, contains Zn-ribbon-like motif [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=273.04 Aligned_cols=236 Identities=21% Similarity=0.209 Sum_probs=132.8
Q ss_pred ceEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc-CCCC-hHHHHHHHHhcc
Q 022411 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS-HELP-GDQLLEEISRVL 85 (297)
Q Consensus 8 ~~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-~~~~-~~~~L~ei~RvL 85 (297)
.+|++|+.++..........+..+|.+++-...+.|- .+.-+.++| -+.||.++.-... .|-. ....|++-+.-|
T Consensus 3 ~tV~~LT~~~~t~~~~~~K~i~~L~DNGs~~~L~~I~-kV~~LiN~~--IN~~D~~~~~mD~~~~n~Tv~~~L~k~~tnl 79 (284)
T COG5636 3 ETVHYLTPEAQTDIKFPKKLISVLADNGSLIGLSDIY-KVDALINEI--INEPDYCWIKMDSSKLNQTVSIPLKKKKTNL 79 (284)
T ss_pred ceeEEeCCccccchhhhhhhhheeccCccccchHHHH-HHHHHHhhh--ccCCceEEEEcccchhhccccchhhhhhccc
Confidence 4799999888877655555554444433211111111 111222333 5678888765432 2322 344577777789
Q ss_pred cCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc-hhccccCccce--eEeeeeecCCCCCCCCccc-ccc-Cc
Q 022411 86 KPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR-IQLKSVVPAEV--VSFGVKGKKPTWKIGSSFA-IKK-AP 160 (297)
Q Consensus 86 KPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~-~~~kp~~~~~~--~~~~i~akKP~~~~gs~~~-~~~-~~ 160 (297)
.|||.|-...-...... .+.....++|...+.. .|.+|-. ..+ ....++-+.-- ..+... ++. ..
T Consensus 80 ~~G~~L~~~~~A~~s~~-------n~~~~A~~S~~~I~~~t~~~~~~~-~k~~t~P~~~~~~d~~--~edk~~~~~~l~S 149 (284)
T COG5636 80 QSGSKLPTFKKASSSTS-------NLPKKADHSRQPIVKETDSFKPPS-FKMTTEPKVYRVVDDL--MEDKEELRKLLRS 149 (284)
T ss_pred CCCCcccceeccccccc-------cccchhhhcCCceeecCccccCCC-ccceecceEEeecccc--cccHHHHHHHHhh
Confidence 99999965543322111 2334455566544332 2222211 000 00000000000 000000 000 00
Q ss_pred ccccccccCCCCCccCcCCCCCccccCCCCCCCCCCCCC--CCCccCCCCCccchHHHHHHH-------HhcCCCccccC
Q 022411 161 KSLAKLQVDDDSDLIDEDTLLTEEDLKKPQLPSVGDCEV--GSTRKACKNCICGRAEAEEKV-------EKLGLTMDQLK 231 (297)
Q Consensus 161 ~~~~~~~~ddd~dlIded~Ll~e~d~~~p~~~~~~~C~~--~~krkACknCtCGlaE~e~~~-------~~~~~~~~~~~ 231 (297)
+.-.-...|+|+++|+||+||+|+.-.+-. +. ..|.+ |+|+|||||||||++|+||.+ +.+|||+++++
T Consensus 150 ~~q~~~~~dtd~~~i~edEllde~s~d~~i-~~-~ec~p~~~kKKrACKdCTCGlkE~eE~E~~rt~Q~~~VK~Te~~~~ 227 (284)
T COG5636 150 KAQYMMRKDTDPRTIMEDELLDEDSEDKAI-QR-SECPPSKTKKKRACKDCTCGLKEEEENEIVRTRQDKVVKFTEDELT 227 (284)
T ss_pred hhHhhhccCCChhhhhhhhhhcccccccee-ec-ccCCCCcchhhhhcccCCccchhhhhhhhhhhhhhhheecccccee
Confidence 000012346788999999999995322222 22 46864 789999999999999998743 45899988766
Q ss_pred C--------CCCCCCcc----ccccCCCCCCCCCCCCCC
Q 022411 232 N--------PQSACGMW----TWRCFPLRYMPLQGSASI 258 (297)
Q Consensus 232 ~--------~~ssCGnC----AFRC~~CPYlGlPaF~~~ 258 (297)
+ ++|+|||| ||||+||||||||||+||
T Consensus 228 e~~~~i~~K~Vs~CGnCylGDAFRCSGCPylGlPaf~PG 266 (284)
T COG5636 228 EIDFTIDGKKVSACGNCYLGDAFRCSGCPYLGLPAFEPG 266 (284)
T ss_pred eeeeeeccccccccccccccccceecCCCccCCCCCCCC
Confidence 5 58999999 999999999999999855
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=5.5e-13 Score=121.57 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=83.0
Q ss_pred cCceEEEeecCC--------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411 6 MQSAVLALSEDK--------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (297)
Q Consensus 6 ~~~~VLll~~~~--------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~ 70 (297)
.|.+||-|--|+ .++..|+++.|++.|+++.... ..+++|+++++++|||+|++||+|++.+.++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 366777775554 4567799999999999987654 3459999999999999999999999999999
Q ss_pred CCC-hHHHHHHHHhcccCCcEEEEEecCCCCccc
Q 022411 71 ELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGD 103 (297)
Q Consensus 71 ~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~ 103 (297)
+++ .+.+|+|++|||||||++++.+......+.
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence 998 899999999999999999999987654333
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.32 E-value=1.5e-12 Score=118.44 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+..|+++.|++.|+++.... ..+|+++++|+++|||++++||+|++.+.+++++ ...+++|++|+|||||+|+|.+..
T Consensus 76 ~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 76 VGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp EEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 34589999999999887654 4589999999999999999999999999999988 789999999999999999999876
Q ss_pred CC
Q 022411 98 TS 99 (297)
Q Consensus 98 ~~ 99 (297)
..
T Consensus 156 ~p 157 (233)
T PF01209_consen 156 KP 157 (233)
T ss_dssp B-
T ss_pred CC
Confidence 43
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.25 E-value=4e-11 Score=102.77 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411 22 SAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.|+++.|++.|+++.... ..++.+++++++++|+++++||+|++.+.+|+++ ...+++|++|+|||||+|++.++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 478899999998664321 3479999999999999999999999999999887 78999999999999999999987
Q ss_pred CC
Q 022411 97 LT 98 (297)
Q Consensus 97 ~~ 98 (297)
..
T Consensus 83 ~~ 84 (160)
T PLN02232 83 NK 84 (160)
T ss_pred CC
Confidence 64
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.17 E-value=1.1e-10 Score=107.80 Aligned_cols=95 Identities=21% Similarity=0.209 Sum_probs=77.4
Q ss_pred ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhh----hcCCCeEEEEccCCCCCCCCCcccEEEe
Q 022411 5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVE----QCDPQIITQASSLSQLPVESFSIDTVLS 65 (297)
Q Consensus 5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~----~~~~~v~~~~~d~~~Lp~~d~sfD~Vls 65 (297)
+.+++||-|--|+ .++..|++++|+++|+++.. ....++.+++++++++|+++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 3466777774443 33455788999999987542 2245899999999999999999999999
Q ss_pred ccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC
Q 022411 66 ISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS 99 (297)
Q Consensus 66 ~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~ 99 (297)
.+.+|+++ +..+++|++|+|||||+|++.++...
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 99999988 88999999999999999999987643
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.16 E-value=8.9e-11 Score=107.17 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=73.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc----CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC----DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGT 90 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~----~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~ 90 (297)
++.|++-|+...|++.+.+++.+. ...+.|+.+|++.|||++++||..+..+.+..++ ++++|+|.+|+|||||+
T Consensus 130 ~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGr 209 (296)
T KOG1540|consen 130 ESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGR 209 (296)
T ss_pred CceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcE
Confidence 366778899999999999887443 3459999999999999999999999999888776 89999999999999999
Q ss_pred EEEEecCCC
Q 022411 91 ILIYKKLTS 99 (297)
Q Consensus 91 l~i~~~~~~ 99 (297)
|++.++...
T Consensus 210 f~cLeFskv 218 (296)
T KOG1540|consen 210 FSCLEFSKV 218 (296)
T ss_pred EEEEEcccc
Confidence 999988754
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.13 E-value=4.4e-11 Score=90.99 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=63.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i 93 (297)
+..++..|++++|++.++++... ..+.++.++++.+|+++++||+|++...+||++ ...+++|+.|+|||||+++|
T Consensus 19 ~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 19 GASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp TCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 56667778899999999876533 345599999999999999999999999999997 78999999999999999986
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=100.83 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=91.7
Q ss_pred cccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411 4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS 67 (297)
Q Consensus 4 ~~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~ 67 (297)
++.|.+||.+-.|+- ++..|+++.|++.|+++.... ..++.++.++++.+|+++++||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 456778888755443 334577889999998876543 4588999999999999999999999999
Q ss_pred ccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCC-cc-chH-------------HHHHHHHHHHHHCCcccccc
Q 022411 68 SSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD-KG-DVD-------------KAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 68 ~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g-~~~-------------~~~~~l~~~L~laGFv~v~~ 125 (297)
++|+.+ ...++++++|+|||||+|++.+..... .. ... ....++...|..+||.++..
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 888887 678999999999999999998754221 00 000 01246677788899998654
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=98.98 E-value=1.5e-09 Score=103.88 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=91.4
Q ss_pred ccCceEEEeecC-------------CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411 5 KMQSAVLALSED-------------KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS 69 (297)
Q Consensus 5 ~~~~~VLll~~~-------------~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~ 69 (297)
+.+.+||-|--| ..|+..|+++.|++.++++++.. ..++.++.+|+.++|+++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 345667766443 34445578889999988765543 357999999999999999999999999998
Q ss_pred CCCC-hHHHHHHHHhcccCCcEEEEEecCCCCc--c--ch--------HH-----------HHHHHHHHHHHCCcccccc
Q 022411 70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSDK--G--DV--------DK-----------AISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g--~~--------~~-----------~~~~l~~~L~laGFv~v~~ 125 (297)
+|++ ...++++++|+|||||+|+|.++..... + .+ .. ..+++...+..+||.++..
T Consensus 197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 197 EHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 8887 7889999999999999999987542110 0 00 00 1346677889999998765
Q ss_pred hh
Q 022411 126 IQ 127 (297)
Q Consensus 126 ~~ 127 (297)
..
T Consensus 277 ~d 278 (340)
T PLN02244 277 ED 278 (340)
T ss_pred ee
Confidence 43
No 12
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.89 E-value=4.9e-09 Score=100.47 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=97.8
Q ss_pred CceEEEeecCCc--------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411 7 QSAVLALSEDKI--------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (297)
Q Consensus 7 ~~~VLll~~~~~--------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~ 72 (297)
+.+||-|-.|+. ++..|+++.|++.|+++.. ..++.++.++++.+|+++++||+|++...++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 456777755442 3345667889998887543 346888999999999999999999999988888
Q ss_pred C-hHHHHHHHHhcccCCcEEEEEecCCCCcc--c-hH------HHHHHHHHHHHHCCcccccchhccccCccce------
Q 022411 73 P-GDQLLEEISRVLKPGGTILIYKKLTSDKG--D-VD------KAISALEGKLLLAGFLDAQRIQLKSVVPAEV------ 136 (297)
Q Consensus 73 ~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--~-~~------~~~~~l~~~L~laGFv~v~~~~~kp~~~~~~------ 136 (297)
+ ...++++++|+|||||++++.+....... . .. ...+++...|..+||.+++.....+....++
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~~~~~~~~~ 271 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLI 271 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhccccccccce
Confidence 7 78899999999999999988764321100 0 00 0235677889999999876544333221111
Q ss_pred eEeeeeecCCCC
Q 022411 137 VSFGVKGKKPTW 148 (297)
Q Consensus 137 ~~~~i~akKP~~ 148 (297)
..+.++++||.-
T Consensus 272 ~~~~v~~~k~~~ 283 (340)
T PLN02490 272 MGCSVTGVKPAS 283 (340)
T ss_pred eeEEEEEecccc
Confidence 245677888764
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.89 E-value=5.9e-09 Score=96.32 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=88.2
Q ss_pred ccCceEEEeecCC-------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411 5 KMQSAVLALSEDK-------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (297)
Q Consensus 5 ~~~~~VLll~~~~-------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~ 71 (297)
+.+.+||-|-.|+ .++..|+++.|++.|+++... ..++.+..+++..+|+++++||+|++...++|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 3456777764443 334456678899998876543 45799999999999999999999999877766
Q ss_pred CC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHH--------------HHHHHHHHHHHCCcccccch
Q 022411 72 LP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK--------------AISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 72 ~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~--------------~~~~l~~~L~laGFv~v~~~ 126 (297)
++ ...++++++|+|||||+|++.++.......+.. ....+...|..+||.++...
T Consensus 130 ~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 130 LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 64 478999999999999999999875332111111 12466778899999887643
No 14
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=6.8e-09 Score=92.44 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=78.2
Q ss_pred CccChHHHHHHHHHHHHHHhh-hcCCCeE-EEEccCCCCC-CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411 17 KILPVSAVLNAIRDLGDEAVE-QCDPQII-TQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~-~~~~~v~-~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (297)
-.||..|..+.|-+++.+.++ +...++. |+.++.++|| +++.|||+|+..+.++... +.+.|+++.|+|||||+++
T Consensus 100 ~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 100 NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEE
Confidence 345667888999999987654 4567777 9999999999 9999999999999888776 7899999999999999999
Q ss_pred EEecCCCCccchHHHHHH
Q 022411 93 IYKKLTSDKGDVDKAISA 110 (297)
Q Consensus 93 i~~~~~~~~g~~~~~~~~ 110 (297)
+.++..+..+.+...|++
T Consensus 180 fiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 180 FIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred EEecccccchHHHHHHHH
Confidence 999998765555554443
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.83 E-value=1.9e-08 Score=90.19 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=67.3
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
++..|+++.|++.++++.... ..++.++.+++..+|+++++||+|++.+.+++++ ...++++++|+|+|||++++.+.
T Consensus 73 v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 73 VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 345567789999988776443 4579999999999999999999999999888887 78899999999999999998876
Q ss_pred CC
Q 022411 97 LT 98 (297)
Q Consensus 97 ~~ 98 (297)
..
T Consensus 153 ~~ 154 (231)
T TIGR02752 153 SQ 154 (231)
T ss_pred CC
Confidence 54
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.75 E-value=3.9e-08 Score=97.71 Aligned_cols=108 Identities=18% Similarity=0.143 Sum_probs=84.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.++..|+++.|++.|+++......++.+..+|+..+|+++++||+|++..+++|++ +..++++++|+|||||+|++.++
T Consensus 291 ~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 291 HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 34566888999999987765555679999999999999999999999999888888 78999999999999999999876
Q ss_pred CCCCc---cchH----------HHHHHHHHHHHHCCcccccc
Q 022411 97 LTSDK---GDVD----------KAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 97 ~~~~~---g~~~----------~~~~~l~~~L~laGFv~v~~ 125 (297)
..... .... ...+.+...+..+||..+..
T Consensus 371 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 371 CRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred ccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 53211 0000 11345677888899987643
No 17
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.69 E-value=1.5e-08 Score=92.23 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=67.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
++..|+++.|++.++++. ..+.++.+|++.+|+++++||+|+++..+||++ +..++.+++|+|||||.|++..+.
T Consensus 67 v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 67 VTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 345577889999887653 235678999999999999999999999999987 789999999999999999999887
Q ss_pred CCCcc
Q 022411 98 TSDKG 102 (297)
Q Consensus 98 ~~~~g 102 (297)
.++..
T Consensus 143 ~~~~~ 147 (251)
T PRK10258 143 QGSLP 147 (251)
T ss_pred CCchH
Confidence 65443
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.66 E-value=3.3e-08 Score=94.15 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=69.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.|+..|++++|++.|+.++... ..++.+++++++.+|+.+++||+|++..+++|+. +..+++++.|+|||||.+++.
T Consensus 155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 4556689999999998765332 3479999999999998889999999999999998 889999999999999999998
Q ss_pred ecCC
Q 022411 95 KKLT 98 (297)
Q Consensus 95 ~~~~ 98 (297)
+...
T Consensus 235 t~nr 238 (322)
T PLN02396 235 TINR 238 (322)
T ss_pred ECCc
Confidence 7643
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.58 E-value=1.6e-07 Score=84.96 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=63.8
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (297)
++..|+++.|++.|+++.... ..++.++.+++..++++ .||+|++.+++||++ ...++++++|+|||||.|++
T Consensus 82 v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 82 IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 445577899999998876543 34789999999998875 489999999999987 26799999999999999999
Q ss_pred EecC
Q 022411 94 YKKL 97 (297)
Q Consensus 94 ~~~~ 97 (297)
.++.
T Consensus 160 ~d~~ 163 (239)
T TIGR00740 160 SEKF 163 (239)
T ss_pred eecc
Confidence 9764
No 20
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.53 E-value=6.5e-08 Score=88.55 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=67.4
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP-VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (297)
..|+..|++++|++.|+++.... ..++.++.+++..++ +.+++||+|++..+++|+. +..++.++.|+|||||+|+
T Consensus 67 ~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 67 HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 34556799999999998876543 457899999998774 6678999999999999987 7889999999999999998
Q ss_pred EEecC
Q 022411 93 IYKKL 97 (297)
Q Consensus 93 i~~~~ 97 (297)
+..+.
T Consensus 147 i~~~n 151 (255)
T PRK11036 147 LMFYN 151 (255)
T ss_pred EEEEC
Confidence 87544
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.50 E-value=4.4e-07 Score=86.41 Aligned_cols=108 Identities=19% Similarity=0.183 Sum_probs=77.4
Q ss_pred cChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
|...|.+..|+.+++..... ...++.++.++++.+|+ +++||+|++..+++|.. +..++++++|+|+|||.|++..
T Consensus 148 V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 148 VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 44556667777665432222 24579999999999998 78999999998888877 7899999999999999998875
Q ss_pred cCCCCcc-----chH-----------HHHHHHHHHHHHCCcccccchh
Q 022411 96 KLTSDKG-----DVD-----------KAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 96 ~~~~~~g-----~~~-----------~~~~~l~~~L~laGFv~v~~~~ 127 (297)
......+ +.. .+...+...|..+||.++....
T Consensus 227 ~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 227 LVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred EEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 3211000 000 1235778889999999886543
No 22
>PRK08317 hypothetical protein; Provisional
Probab=98.50 E-value=4.5e-07 Score=80.33 Aligned_cols=121 Identities=22% Similarity=0.209 Sum_probs=86.0
Q ss_pred ccCceEEEeecCCcc---------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411 5 KMQSAVLALSEDKIL---------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (297)
Q Consensus 5 ~~~~~VLll~~~~~v---------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~ 69 (297)
+.+.+||-+--|+.. +..|+++.+++.++++......++.+..+++..+|+++++||+|++...+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 345677777554333 23455567777777654444668999999999999999999999999988
Q ss_pred CCCC-hHHHHHHHHhcccCCcEEEEEecCCCC------ccc-hH---H----------HHHHHHHHHHHCCcccccc
Q 022411 70 HELP-GDQLLEEISRVLKPGGTILIYKKLTSD------KGD-VD---K----------AISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 70 ~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~------~g~-~~---~----------~~~~l~~~L~laGFv~v~~ 125 (297)
+++. +..++++++++|||||.+++.++.... ... .. . ....+...|..+||.++..
T Consensus 98 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 98 QHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeE
Confidence 8887 788999999999999999988753111 000 00 0 1134667788999987653
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.47 E-value=2e-07 Score=78.50 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l 91 (297)
+..++..|++++|++.|+++++.. ..++++.++|+.+++ ++ +.||+|++..+++++. ...+++++.+.|++||.+
T Consensus 28 ~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~ 106 (152)
T PF13847_consen 28 GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGIL 106 (152)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEE
T ss_pred CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEE
Confidence 344556688899999999876554 458999999999987 66 8999999999999988 778999999999999999
Q ss_pred EEEecC
Q 022411 92 LIYKKL 97 (297)
Q Consensus 92 ~i~~~~ 97 (297)
++.+..
T Consensus 107 i~~~~~ 112 (152)
T PF13847_consen 107 IISDPN 112 (152)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998875
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.46 E-value=5.3e-07 Score=82.37 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=64.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~ 92 (297)
.++..|.++.|++.|+++.+.. ..++.++.+++..+|++ .||+|++++++|+++. ..++++++|+|||||.|+
T Consensus 84 ~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 84 KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3445578899999999887543 34799999999988865 4999999999998872 579999999999999999
Q ss_pred EEecC
Q 022411 93 IYKKL 97 (297)
Q Consensus 93 i~~~~ 97 (297)
+.+..
T Consensus 162 l~e~~ 166 (247)
T PRK15451 162 LSEKF 166 (247)
T ss_pred EEEec
Confidence 98854
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.40 E-value=8.1e-07 Score=78.88 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
+..|++..|++.++++.. .++.++.++++.+|+++++||+|++...+||+. +..++.++.++|||||.+++..+..
T Consensus 62 ~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 62 IALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 455667788887766543 478899999999999999999999999999986 7889999999999999999988765
Q ss_pred CC
Q 022411 99 SD 100 (297)
Q Consensus 99 ~~ 100 (297)
..
T Consensus 139 ~~ 140 (240)
T TIGR02072 139 GT 140 (240)
T ss_pred cC
Confidence 43
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.40 E-value=2e-06 Score=76.56 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 21 VSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..|+++.+++.++++... ...++.+..+++..++++.++||+|++...+|+++ ...++.++.++|+|||++++.+..
T Consensus 81 ~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 81 GLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred EEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 445567888888776543 34578999999998888888999999988888887 788999999999999999987654
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.39 E-value=6.9e-07 Score=79.63 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=79.7
Q ss_pred ccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.++..++++.|++.++++... ...++.+..+|+...|++ ++||+|++...++++. ...++++++++|||||++++.
T Consensus 25 ~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 25 QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 344556788888888877654 345789999998777765 4899999999888887 789999999999999999998
Q ss_pred ecCCCCccc--------hHHHHHHHHHHHHHCCcccccch
Q 022411 95 KKLTSDKGD--------VDKAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 95 ~~~~~~~g~--------~~~~~~~l~~~L~laGFv~v~~~ 126 (297)
+........ ......++...+..+||..+...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 104 DFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred EcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 764211000 01123467778889999976544
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.37 E-value=3.4e-07 Score=83.74 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=60.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.++..|+++.|++.|+++ ++.++.++++.++ ++++||+|+++..+||++ +..++++++|+|||||++++..+
T Consensus 55 ~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 55 VIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 344557778888887652 5788999998875 567999999999999998 78999999999999999998754
Q ss_pred C
Q 022411 97 L 97 (297)
Q Consensus 97 ~ 97 (297)
.
T Consensus 128 ~ 128 (255)
T PRK14103 128 G 128 (255)
T ss_pred C
Confidence 3
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.32 E-value=4.7e-07 Score=71.02 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=61.3
Q ss_pred CccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCc
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGG 89 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG 89 (297)
..++..|++++|++.++++......++.++++|+.++++.+++||+|++. .+++|+. ...++++++++|||||
T Consensus 25 ~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 25 SRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45557799999999999877666669999999999999999999999995 4477777 3789999999999998
No 30
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.29 E-value=5e-06 Score=73.22 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..|+.+.+++.++++.. ...++.++.+++..++++.+.||+|++...+|+.+ ...+++++.++|+|||++++.+..
T Consensus 69 ~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 69 GVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 44556677777766543 44578899999999988888999999998888887 788999999999999999987753
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.29 E-value=1.2e-06 Score=77.22 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=63.7
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (297)
+..|+..|+++.|++.++++++..+.++.+..+++...+++ .+||+|+++..+|+++ ...++++++|+|||||+++
T Consensus 52 g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 52 GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 55667778999999998877655444577778888777765 5799999999888886 3689999999999999977
Q ss_pred EEec
Q 022411 93 IYKK 96 (297)
Q Consensus 93 i~~~ 96 (297)
+.++
T Consensus 131 i~~~ 134 (195)
T TIGR00477 131 IVAA 134 (195)
T ss_pred EEEe
Confidence 6654
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.29 E-value=1.5e-06 Score=82.56 Aligned_cols=107 Identities=18% Similarity=0.143 Sum_probs=75.9
Q ss_pred cChHHHHHHHHHHHHHHhh--hcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~--~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
++..|.++.|+.+++.... ....++.+...+++.+|.. .+||+|++..+++|++ +..+|++++|+|||||.|++.+
T Consensus 147 v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 147 LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 4455777788876543211 2245788888899999864 4899999999888887 7899999999999999999875
Q ss_pred cC-CCCc-------cchH--------HHHHHHHHHHHHCCcccccch
Q 022411 96 KL-TSDK-------GDVD--------KAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 96 ~~-~~~~-------g~~~--------~~~~~l~~~L~laGFv~v~~~ 126 (297)
.. .+.. +... .+...+...|..+||.+++..
T Consensus 226 l~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 226 LVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred EEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 32 1110 0000 023567788999999988654
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.28 E-value=3.9e-07 Score=82.91 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=74.4
Q ss_pred cCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEE
Q 022411 15 EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i 93 (297)
.|+.||..|+++++++.|+..+......+.+.+..++.+-...++||+|++.-+++|++ ++.++..+.+.+||||.+++
T Consensus 80 ~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 80 LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEE
Confidence 37788899999999999998776667778899999988876668999999999999999 88999999999999999999
Q ss_pred EecCC
Q 022411 94 YKKLT 98 (297)
Q Consensus 94 ~~~~~ 98 (297)
++...
T Consensus 160 STinr 164 (243)
T COG2227 160 STINR 164 (243)
T ss_pred ecccc
Confidence 98764
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.27 E-value=1.6e-06 Score=76.60 Aligned_cols=79 Identities=19% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l 91 (297)
+..|+..|+++.|++.+++++... ..++.+..+++..++++ .+||+|+++..+|+++ ...+++++.|+|||||++
T Consensus 52 g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 52 GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 445667789999999998766543 34688889999888775 5799999999888876 368999999999999997
Q ss_pred EEEe
Q 022411 92 LIYK 95 (297)
Q Consensus 92 ~i~~ 95 (297)
++..
T Consensus 131 ~~~~ 134 (197)
T PRK11207 131 LIVA 134 (197)
T ss_pred EEEE
Confidence 6543
No 35
>PRK05785 hypothetical protein; Provisional
Probab=98.26 E-value=2e-06 Score=77.86 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCC
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPG 88 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPG 88 (297)
++..|++++|++.|+++ ..+++++++++|+++++||+|++.+.+||++ +..+++|++|+|||.
T Consensus 77 v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 77 VVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 44557788999988753 1357889999999999999999999999987 789999999999994
No 36
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.23 E-value=2.2e-06 Score=77.84 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=67.2
Q ss_pred CeEEEEccCCCC--CCCCCcccEEEeccc---c-CCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHH
Q 022411 42 QIITQASSLSQL--PVESFSIDTVLSISS---S-HELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKL 115 (297)
Q Consensus 42 ~v~~~~~d~~~L--p~~d~sfD~Vls~~~---~-~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L 115 (297)
.|..+.||+.++ .|+|+|||+|+.--. . .++....++.|++|+|||||+++.+...+++...-......+.+.|
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RL 265 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERL 265 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHH
Confidence 567788887654 588999999987532 1 1344689999999999999999988876653211011223677889
Q ss_pred HHCCcccccchhccccCccceeEeeeeecCC
Q 022411 116 LLAGFLDAQRIQLKSVVPAEVVSFGVKGKKP 146 (297)
Q Consensus 116 ~laGFv~v~~~~~kp~~~~~~~~~~i~akKP 146 (297)
...||..+.... ..+++.|.||
T Consensus 266 r~vGF~~v~~~~---------~~~gv~A~k~ 287 (287)
T COG2521 266 RRVGFEVVKKVR---------EALGVVAVKP 287 (287)
T ss_pred HhcCceeeeeeh---------hccceEEecC
Confidence 999999876543 1235667665
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.20 E-value=2e-06 Score=67.83 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=60.3
Q ss_pred CCccChHHHHHHHHHHHHHHhh--hcCCCeEEEEccC-CCCCCCCCcccEEEecc-ccCCCC----hHHHHHHHHhcccC
Q 022411 16 DKILPVSAVLNAIRDLGDEAVE--QCDPQIITQASSL-SQLPVESFSIDTVLSIS-SSHELP----GDQLLEEISRVLKP 87 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~--~~~~~v~~~~~d~-~~Lp~~d~sfD~Vls~~-~~~~~~----~~~~L~ei~RvLKP 87 (297)
+..++..|++++|++.|++++. ....++.++++++ ....+ ...||+|++.. .++++. ...+++++.+.|+|
T Consensus 25 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p 103 (112)
T PF12847_consen 25 GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKP 103 (112)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCC
Confidence 4445556788899999998873 3467999999999 33332 34599999988 555333 36889999999999
Q ss_pred CcEEEEEe
Q 022411 88 GGTILIYK 95 (297)
Q Consensus 88 GG~l~i~~ 95 (297)
||+|+|..
T Consensus 104 gG~lvi~~ 111 (112)
T PF12847_consen 104 GGRLVINT 111 (112)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEE
Confidence 99999875
No 38
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.19 E-value=4.3e-06 Score=74.26 Aligned_cols=99 Identities=15% Similarity=0.011 Sum_probs=73.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccC-CCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHhc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSL-SQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISRV 84 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~-~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~Rv 84 (297)
.++..|+++.|++.++++.... ..++.++++++ +.++ +++++||+|++++...|.. ...++++++++
T Consensus 66 ~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~ 145 (202)
T PRK00121 66 NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK 145 (202)
T ss_pred cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHH
Confidence 4556688889999988766443 36799999999 7777 7889999999987554432 36789999999
Q ss_pred ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411 85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (297)
|||||.|++..... .....+...+..+||...
T Consensus 146 LkpgG~l~i~~~~~-------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 146 LKPGGEIHFATDWE-------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cCCCCEEEEEcCCH-------HHHHHHHHHHHhCccccc
Confidence 99999999876432 223356667778887643
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.19 E-value=1.4e-05 Score=70.48 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=72.1
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (297)
+..++..|.++.|++.|+++++.. ..+++++.+++..++. .++||+|++... .....++.++++.|||||++++.
T Consensus 69 ~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 69 ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 344556688999999999877654 3459999999998877 779999998752 23578999999999999999988
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
.... .. ..+......+|..-..
T Consensus 145 ~~~~-----~~---~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 145 KGRD-----PE---EEIAELPKALGGKVEE 166 (187)
T ss_pred eCCC-----hH---HHHHHHHHhcCceEee
Confidence 6432 11 1455556666887443
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.19 E-value=1.4e-06 Score=80.80 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=64.3
Q ss_pred ccChHHHHHHHHHHHHHHhhh----------------------------cCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQ----------------------------CDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~----------------------------~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~ 69 (297)
.++..|+++.|++.|++++-. ...+|.|.++|+...+++.++||+|++.+++
T Consensus 134 ~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl 213 (264)
T smart00138 134 KILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL 213 (264)
T ss_pred EEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH
Confidence 455678999999999875310 1136899999999988888999999999999
Q ss_pred CCCC-h--HHHHHHHHhcccCCcEEEEEe
Q 022411 70 HELP-G--DQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 70 ~~~~-~--~~~L~ei~RvLKPGG~l~i~~ 95 (297)
+|++ . ..++++++++|+|||+|++..
T Consensus 214 ~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 214 IYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 9997 2 479999999999999999754
No 41
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.16 E-value=2.2e-06 Score=71.42 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=59.0
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCC----------ccchH------
Q 022411 43 IITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSD----------KGDVD------ 105 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~----------~g~~~------ 105 (297)
+.....+....++++++||+|+++.+++|++ +..+|++++++|||||.+++.++.... .....
T Consensus 62 ~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (161)
T PF13489_consen 62 VVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHF 141 (161)
T ss_dssp SEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEE
T ss_pred hhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceecc
Confidence 3344433445566789999999999999998 899999999999999999999986421 00000
Q ss_pred HHHHHHHHHHHHCCccccc
Q 022411 106 KAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 106 ~~~~~l~~~L~laGFv~v~ 124 (297)
...+++...+..+||..++
T Consensus 142 ~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 142 FSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BBHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEE
Confidence 0124667777888877654
No 42
>PRK04266 fibrillarin; Provisional
Probab=98.12 E-value=2.2e-05 Score=71.27 Aligned_cols=120 Identities=18% Similarity=0.107 Sum_probs=76.5
Q ss_pred cccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC----CCCCCcccEEEe
Q 022411 4 GKMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQL----PVESFSIDTVLS 65 (297)
Q Consensus 4 ~~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L----p~~d~sfD~Vls 65 (297)
++.|.+||-+-.|+.. ...|+++.|++...+++.. ..++.++.+|+... ++. ++||+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 3456777777665433 2336667777766655433 36788999988642 233 46999996
Q ss_pred ccccCCCChHHHHHHHHhcccCCcEEEEE------ecCCCCccchHHHHHHHHHHHHHCCcccccchhccc
Q 022411 66 ISSSHELPGDQLLEEISRVLKPGGTILIY------KKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQLKS 130 (297)
Q Consensus 66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~------~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp 130 (297)
.....| ....++.+++|+|||||+|+|. ++.. ......+.....+..+||..++.....|
T Consensus 148 d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~----~~~~~~~~~~~~l~~aGF~~i~~~~l~p 213 (226)
T PRK04266 148 DVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK----DPKEIFKEEIRKLEEGGFEILEVVDLEP 213 (226)
T ss_pred CCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcC----CHHHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 543211 1245689999999999999993 3322 1112234556789999999887665444
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.12 E-value=3.7e-06 Score=76.69 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=60.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEec
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.++..|+++.|++.|+++. .++.++.+++..++ +..+||+|+++..+||++ ...++++++++|||||++++..+
T Consensus 57 ~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 57 RITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3445577888999887653 46888999998775 456999999999999997 78899999999999999998753
No 44
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.11 E-value=6.3e-06 Score=75.91 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=64.6
Q ss_pred CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411 42 QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (297)
Q Consensus 42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (297)
+-.++.+|+.++|++|+|.|+++.+.+++......++.|++|+|||||.|+|.+.... + .....+.+.+...||-
T Consensus 211 ~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR----f-~dv~~f~r~l~~lGF~ 285 (325)
T KOG3045|consen 211 NERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR----F-SDVKGFVRALTKLGFD 285 (325)
T ss_pred CCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh----c-ccHHHHHHHHHHcCCe
Confidence 4456678999999999999999998888877778899999999999999999987642 1 1233678899999998
Q ss_pred cccc
Q 022411 122 DAQR 125 (297)
Q Consensus 122 ~v~~ 125 (297)
..+.
T Consensus 286 ~~~~ 289 (325)
T KOG3045|consen 286 VKHK 289 (325)
T ss_pred eeeh
Confidence 6554
No 45
>PRK06922 hypothetical protein; Provisional
Probab=98.11 E-value=2.9e-06 Score=87.22 Aligned_cols=78 Identities=24% Similarity=0.207 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC--------------hHHHHHHHHh
Q 022411 20 PVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISSSHELP--------------GDQLLEEISR 83 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~--------------~~~~L~ei~R 83 (297)
+..|+++.|++.|+++......++.++.+|+.++| +++++||+|++++.+|++. ...++++++|
T Consensus 446 tGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R 525 (677)
T PRK06922 446 YGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE 525 (677)
T ss_pred EEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH
Confidence 34577888999998765544567888899998888 8899999999998887541 3689999999
Q ss_pred cccCCcEEEEEecC
Q 022411 84 VLKPGGTILIYKKL 97 (297)
Q Consensus 84 vLKPGG~l~i~~~~ 97 (297)
+|||||++++.+..
T Consensus 526 VLKPGGrLII~D~v 539 (677)
T PRK06922 526 VLKPGGRIIIRDGI 539 (677)
T ss_pred HcCCCcEEEEEeCc
Confidence 99999999998753
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.11 E-value=3.5e-06 Score=77.97 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=57.6
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCC
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
++..|++..|++.|+++ .+++.+.++++.++|+++++||+|++.+.. ..+.|++|+|||||+|++..+..
T Consensus 115 v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 115 LFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeCCC
Confidence 34567788888887653 467889999999999999999999987642 24689999999999999988765
Q ss_pred C
Q 022411 99 S 99 (297)
Q Consensus 99 ~ 99 (297)
.
T Consensus 185 ~ 185 (272)
T PRK11088 185 R 185 (272)
T ss_pred c
Confidence 3
No 47
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.09 E-value=1.4e-05 Score=75.04 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..|+ +.+++.++++++.. ..+++++.+|+...+++. +|+|+....+|.+.. ..++++++++|||||+|+|.+
T Consensus 178 ~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 178 ILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3343 56778877765543 457999999997666654 699988877886652 468999999999999999998
Q ss_pred cC
Q 022411 96 KL 97 (297)
Q Consensus 96 ~~ 97 (297)
..
T Consensus 255 ~~ 256 (306)
T TIGR02716 255 MV 256 (306)
T ss_pred ec
Confidence 63
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.06 E-value=7.2e-06 Score=76.60 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (297)
+..|+..|.++.|++.+++++.....++.+...|+...++ +++||+|++..++|+++ ...+++++.|+|+|||+++
T Consensus 142 g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 142 GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4455666888999999888776655578888888887666 67899999999888876 3679999999999999977
Q ss_pred EEec
Q 022411 93 IYKK 96 (297)
Q Consensus 93 i~~~ 96 (297)
+...
T Consensus 221 ~v~~ 224 (287)
T PRK12335 221 IVCA 224 (287)
T ss_pred EEEe
Confidence 6543
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.01 E-value=1.5e-05 Score=70.17 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=70.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC---CCCCcccEEEeccccCCCC---------hHHHHHHHHhc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP---VESFSIDTVLSISSSHELP---------GDQLLEEISRV 84 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp---~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~Rv 84 (297)
.+...|++..|++.|+.++... ..++.++.+++..++ +++++||.|++++...|.. ...++++++|+
T Consensus 42 ~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~ 121 (194)
T TIGR00091 42 NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANV 121 (194)
T ss_pred CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHH
Confidence 4455677888999988776544 458999999997654 5677999999988655532 15789999999
Q ss_pred ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-ccccc
Q 022411 85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDAQ 124 (297)
Q Consensus 85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v~ 124 (297)
|||||.|++..... .....+...+...| |..+.
T Consensus 122 LkpgG~l~~~td~~-------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 122 LKKGGVIHFKTDNE-------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred hCCCCEEEEEeCCH-------HHHHHHHHHHHhCCCeEecc
Confidence 99999998876432 11223444454454 77653
No 50
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.01 E-value=6.9e-06 Score=73.61 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=55.3
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411 43 IITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
-.+.++|+.++|++++++|+++...++........+.|.+|+|||||.|.|.+....- . ..+...+.+...||..
T Consensus 106 ~~Vtacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf-~----~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 106 PRVTACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF-E----NVKQFIKALKKLGFKL 180 (219)
T ss_dssp TTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-----HHHHHHHHHCTTEEE
T ss_pred CCEEEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC-c----CHHHHHHHHHHCCCeE
Confidence 3466789999999999999999998888777678999999999999999999986431 1 2236777888899987
Q ss_pred ccc
Q 022411 123 AQR 125 (297)
Q Consensus 123 v~~ 125 (297)
...
T Consensus 181 ~~~ 183 (219)
T PF05148_consen 181 KSK 183 (219)
T ss_dssp EEE
T ss_pred Eec
Confidence 653
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.00 E-value=1.3e-05 Score=79.62 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=77.7
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCC--CCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLS--QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~--~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i 93 (297)
++..|+++.|++.++.. .....++.++++++. .+|+++++||+|++...+||++. ..++++++|+|||||++++
T Consensus 62 v~giD~s~~~l~~a~~~-~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 62 VIALDFIESVIKKNESI-NGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred EEEEeCCHHHHHHHHHH-hccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34557888888876542 223567899999985 57888999999999999999873 6899999999999999999
Q ss_pred EecCCCCccc------hHH--HHHHHHHHHHHCCcccccc
Q 022411 94 YKKLTSDKGD------VDK--AISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 94 ~~~~~~~~g~------~~~--~~~~l~~~L~laGFv~v~~ 125 (297)
.+......+. +.+ ....+.+.+..+||.....
T Consensus 141 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 141 RESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180 (475)
T ss_pred EeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCC
Confidence 8754221111 111 2346777889999987543
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.99 E-value=2.8e-05 Score=67.31 Aligned_cols=98 Identities=16% Similarity=0.096 Sum_probs=72.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----------------------hH
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD 75 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----------------------~~ 75 (297)
.++..|+++.|++.++++......++.+..+|+...+ ..+||+|+++..+++.+ ..
T Consensus 43 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (179)
T TIGR00537 43 CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVID 120 (179)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHH
Confidence 4556688899999998877655557888888886654 45899999997665443 14
Q ss_pred HHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 76 QLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
.++.++.|+|||||++++....... ...+...|...||....
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~-------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNG-------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCC-------hHHHHHHHHhCCCeEEE
Confidence 5799999999999999988764321 12556678889997543
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.97 E-value=1.2e-06 Score=68.17 Aligned_cols=75 Identities=20% Similarity=0.242 Sum_probs=43.3
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-C-CCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEE
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-V-ESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~-~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l 91 (297)
..++.-|+++.|+++++++.... ..+............ . ..++||+|++..++||++ ...+++.++++|||||+|
T Consensus 21 ~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 21 ARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred CEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 34456677888887777765543 334444433333221 1 225999999999999997 789999999999999986
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.97 E-value=3e-05 Score=67.91 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=70.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.|+..|.++.|++.+++++++. ..++.++.++++.++ ..++||+|++.. +++ ...++++++++|+|||++++...
T Consensus 68 ~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~~--~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 68 KLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LAS--LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hhC--HHHHHHHHHHhcCCCCEEEEEcC
Confidence 3556688889999888776544 346999999999875 357999999876 332 45678899999999999998753
Q ss_pred CCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 97 LTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
.. . ...+..+...+...||..++.
T Consensus 144 ~~----~-~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 144 KK----Y-LDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred CC----c-HHHHHHHHHhhhhcCceEeec
Confidence 22 1 122224445666778886653
No 55
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.87 E-value=6.2e-05 Score=67.53 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=67.6
Q ss_pred CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC-CCCCcccEEEeccccCCCC
Q 022411 7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP-VESFSIDTVLSISSSHELP 73 (297)
Q Consensus 7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~ 73 (297)
+.+||-+-.|+. ++..|+.+.+++.++++.......+.+...++..++ ...+.||+|++...+++.+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP 128 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccC
Confidence 456777654433 334466678888887765544446778888887664 3457899999988888877
Q ss_pred -hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 -GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+..++..+.++|+|||++++..+.
T Consensus 129 ~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 129 DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 788999999999999999988654
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.84 E-value=1.4e-05 Score=72.03 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=70.9
Q ss_pred ecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEE
Q 022411 14 SEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 14 ~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~ 92 (297)
|.++.++..|-+.+|++.|++ ..++++|..+|+.+.. +...+|+++++.++||++ -..+|..+...|.|||.|.
T Consensus 52 wP~A~i~GiDsS~~Mla~Aa~----rlp~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 52 WPDAVITGIDSSPAMLAKAAQ----RLPDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred CCCCeEeeccCCHHHHHHHHH----hCCCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEE
Confidence 889999999999999998854 4688999999999884 567899999999999999 5789999999999999999
Q ss_pred EEecCC
Q 022411 93 IYKKLT 98 (297)
Q Consensus 93 i~~~~~ 98 (297)
++-+..
T Consensus 127 VQmPdN 132 (257)
T COG4106 127 VQMPDN 132 (257)
T ss_pred EECCCc
Confidence 987653
No 57
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.83 E-value=5e-05 Score=67.45 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHhhhcCC-CeEEEEccCCCCCCC-CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVE-SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~-~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..|+++.|++.++.+...... ++.+..+++..++.. .++||+|++...++++. +..+++++.++|+|||.+++....
T Consensus 72 ~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 72 GIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 345667888888776554433 688888888877655 37899999998888887 788999999999999999987653
No 58
>PLN03075 nicotianamine synthase; Provisional
Probab=97.82 E-value=3.5e-05 Score=72.67 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=61.3
Q ss_pred cChHHHHHHHHHHHHHHhhh---cCCCeEEEEccCCCCCCCCCcccEEEeccccCCC--C-hHHHHHHHHhcccCCcEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQ---CDPQIITQASSLSQLPVESFSIDTVLSISSSHEL--P-GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~---~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~--~-~~~~L~ei~RvLKPGG~l~ 92 (297)
++-.|..+++.+.|++.+.. ...++.|..+|+.+++-....||+|++. ++|++ . ...++.++++.|+|||.|+
T Consensus 152 ~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 152 FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEE
Confidence 34557888999999987643 2457999999998764345789999999 67766 2 6899999999999999999
Q ss_pred EEe
Q 022411 93 IYK 95 (297)
Q Consensus 93 i~~ 95 (297)
+..
T Consensus 231 lr~ 233 (296)
T PLN03075 231 LRS 233 (296)
T ss_pred Eec
Confidence 876
No 59
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.78 E-value=7.7e-05 Score=71.04 Aligned_cols=95 Identities=20% Similarity=0.123 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC--------C-C-hHHHHHHHHhcccCCc
Q 022411 21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE--------L-P-GDQLLEEISRVLKPGG 89 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~--------~-~-~~~~L~ei~RvLKPGG 89 (297)
..|+.+.|++.++.++++. ..++.+..+|+.++|+.+++||+|+++..+.. . . ...++.++.|+|||||
T Consensus 209 g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG 288 (329)
T TIGR01177 209 GCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEG 288 (329)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCc
Confidence 4577889999988876553 34578889999999998899999999743211 1 1 3678999999999999
Q ss_pred EEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411 90 TILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 90 ~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (297)
++++..+... .+...+..+|| .+...
T Consensus 289 ~lv~~~~~~~----------~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 289 WIVYAVPTRI----------DLESLAEDAFR-VVKRF 314 (329)
T ss_pred EEEEEEcCCC----------CHHHHHhhcCc-chhee
Confidence 9988876431 34456888999 55443
No 60
>PTZ00146 fibrillarin; Provisional
Probab=97.77 E-value=0.0008 Score=63.42 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=74.1
Q ss_pred cccCceEEEeecCCccC---hH------------HHHHHHHHHHHHHhhhcCCCeEEEEccCCC---CCCCCCcccEEEe
Q 022411 4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQCDPQIITQASSLSQ---LPVESFSIDTVLS 65 (297)
Q Consensus 4 ~~~~~~VLll~~~~~vt---~~------------dlse~m~~~A~~~~~~~~~~v~~~~~d~~~---Lp~~d~sfD~Vls 65 (297)
++.|.+||.|--++-.+ +. |++++|.+.....+. ...+|.++.+|+.. +++...+||+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 56778888886544333 22 222332222222111 12578888888753 2223468999999
Q ss_pred ccccCCCChHHHHHHHHhcccCCcEEEEEecCCC-Cccc-hHHHHHHHHHHHHHCCcccccchhcccc
Q 022411 66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS-DKGD-VDKAISALEGKLLLAGFLDAQRIQLKSV 131 (297)
Q Consensus 66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~-~~g~-~~~~~~~l~~~L~laGFv~v~~~~~kp~ 131 (297)
.... ..+...++.++.++|||||+|+|...... ..+. +...+++-...|..+||..++.....|.
T Consensus 209 Dva~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py 275 (293)
T PTZ00146 209 DVAQ-PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPF 275 (293)
T ss_pred eCCC-cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCc
Confidence 8742 11245677799999999999999432221 1122 2333333236789999998877665544
No 61
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.68 E-value=0.00013 Score=65.32 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=64.0
Q ss_pred ccCceEEEeecCC---------------ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411 5 KMQSAVLALSEDK---------------ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS 68 (297)
Q Consensus 5 ~~~~~VLll~~~~---------------~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~ 68 (297)
+.|++||-+-.|+ .++..|+.++|.+.|+++.+.. ..++.++.+|+...+.+...||+|++...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence 4567788776553 3334567789999998877654 45799999999876667789999998776
Q ss_pred cCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 69 SHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.++++ ..+++.|||||+|++..
T Consensus 155 ~~~~~-----~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDIP-----KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccch-----HHHHHhhCCCcEEEEEE
Confidence 55433 46788999999998754
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.65 E-value=3e-05 Score=70.78 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCc-EEEEEecC
Q 022411 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG-TILIYKKL 97 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG-~l~i~~~~ 97 (297)
..|++++|++.|.+.-... +........++..|-=.++|+|+|++...+|||..+.++++++|+||+.| .+.++...
T Consensus 60 atD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 60 ATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred eecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 4488899999887542222 22233333344444334899999999999999999999999999999888 66777665
Q ss_pred C
Q 022411 98 T 98 (297)
Q Consensus 98 ~ 98 (297)
+
T Consensus 140 d 140 (261)
T KOG3010|consen 140 D 140 (261)
T ss_pred C
Confidence 3
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.65 E-value=0.0001 Score=58.69 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=56.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.++..|+++.+++.++++++.. ..++.++.+++.. ++....+||+|++....+. ...++++++|.|||||+|++..
T Consensus 45 ~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 45 RVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcCCCCEEEEEe
Confidence 3455677888999888776544 4578888888764 3344468999998764332 3578999999999999998753
No 64
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.63 E-value=3.5e-05 Score=71.16 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc---CC----CeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC---DP----QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP 87 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~---~~----~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP 87 (297)
++.|+..|+++.|++.|++..... .. ++++...+++.+- ..||+|++.-+++|+. ++.++..+.+.|||
T Consensus 111 ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP 187 (282)
T KOG1270|consen 111 GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKP 187 (282)
T ss_pred CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCC
Confidence 677888899999999999763221 22 3566677777663 4499999999999887 89999999999999
Q ss_pred CcEEEEEecCC
Q 022411 88 GGTILIYKKLT 98 (297)
Q Consensus 88 GG~l~i~~~~~ 98 (297)
||+++|.+...
T Consensus 188 ~G~lfittinr 198 (282)
T KOG1270|consen 188 NGRLFITTINR 198 (282)
T ss_pred CCceEeeehhh
Confidence 99999997653
No 65
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.61 E-value=0.0003 Score=63.36 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=69.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC------CC-----------------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE------LP----------------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~------~~----------------- 73 (297)
.++..|+++.|++.++.++... ..++.++.+++.. ++++++||+|+++..++. +.
T Consensus 113 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~ 191 (251)
T TIGR03534 113 RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED 191 (251)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence 3445677888999988776543 3468999999866 466789999999754321 11
Q ss_pred ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
...++.++.++|+|||.+++..... ..+.+...+..+||.++..
T Consensus 192 ~~~~~~~~i~~~~~~L~~gG~~~~~~~~~--------~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 192 GLDFYRRIIAQAPRLLKPGGWLLLEIGYD--------QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEECcc--------HHHHHHHHHHhCCCCceEE
Confidence 0256889999999999998864321 1235667788899987654
No 66
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.58 E-value=0.00025 Score=62.48 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=67.4
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
++..|.++.|++.+++++... ..++.++.+++..+ +.....||+|++.... .....++.++.++|||||++++..
T Consensus 68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS--EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCc--ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 445577888999998876554 35788888888653 3334689999986422 124678999999999999998744
Q ss_pred cCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 96 KLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 96 ~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
... .....+...|...|| +.+.
T Consensus 146 ~~~-------~~~~~~~~~l~~~g~-~~~~ 167 (198)
T PRK00377 146 ILL-------ETVNNALSALENIGF-NLEI 167 (198)
T ss_pred ecH-------HHHHHHHHHHHHcCC-CeEE
Confidence 321 123356667788999 4443
No 67
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.57 E-value=0.00012 Score=64.98 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=56.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.++..|.+++|.+.|++++.... .++.++.+|+........+||+|++....++++ .++++.|+|||+|++..
T Consensus 99 ~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhh-----HHHHHhcCcCcEEEEEE
Confidence 34566788899999988765542 358999999987554567999999988766554 57889999999998754
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.54 E-value=0.0003 Score=61.26 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC
Q 022411 21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS 99 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~ 99 (297)
..|.++.|++.++++++.. ..++.++.+++. .++ ..+||+|++....++ ...++.++++.|+|||++++.....
T Consensus 60 ~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~lv~~~~~~- 134 (187)
T PRK08287 60 AIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PGKADAIFIGGSGGN--LTAIIDWSLAHLHPGGRLVLTFILL- 134 (187)
T ss_pred EEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-CcCCCEEEECCCccC--HHHHHHHHHHhcCCCeEEEEEEecH-
Confidence 4477788999988776543 346888888874 334 357999998754332 3568899999999999998865432
Q ss_pred CccchHHHHHHHHHHHHHCCcccccc
Q 022411 100 DKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 100 ~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
....++...+..+||.+++.
T Consensus 135 ------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 135 ------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ------hhHHHHHHHHHHCCCCcceE
Confidence 12235667788899987654
No 69
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.51 E-value=0.00015 Score=70.80 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=60.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.|+..|++++|++.|+++... ..+.+..++...+ +++||.|++...++|+. ...+++++.|+|||||++++.
T Consensus 192 ~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 192 SVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 445568899999999887643 3477788887765 47899999998888875 368999999999999999998
Q ss_pred ecC
Q 022411 95 KKL 97 (297)
Q Consensus 95 ~~~ 97 (297)
...
T Consensus 267 ~i~ 269 (383)
T PRK11705 267 TIG 269 (383)
T ss_pred Ecc
Confidence 654
No 70
>PRK06202 hypothetical protein; Provisional
Probab=97.49 E-value=0.00016 Score=65.11 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=58.9
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~ 95 (297)
++..|+++.|++.|+++.. ..++.+...+...+++++++||+|+++..+||++. ..++++++|+++ |.+++.+
T Consensus 91 v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 91 VTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred EEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 4456778899999877543 23567777777778888889999999999999983 469999999998 6666666
Q ss_pred cCC
Q 022411 96 KLT 98 (297)
Q Consensus 96 ~~~ 98 (297)
...
T Consensus 167 l~~ 169 (232)
T PRK06202 167 LIR 169 (232)
T ss_pred ccc
Confidence 543
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=97.49 E-value=0.00048 Score=61.83 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----------------------hH
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----------------------GD 75 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----------------------~~ 75 (297)
.++..|+.+.|++.+++++.....++.++.+++... +++++||+|+++..++... ..
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLD 139 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHH
Confidence 455668888999988887655445688888888653 5678999999985433211 13
Q ss_pred HHHHHHHhcccCCcEEEEEecC
Q 022411 76 QLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
.++.+++++|||||++++....
T Consensus 140 ~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 140 RLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred HHHHHHHHhcCCCcEEEEEEec
Confidence 5778899999999999986544
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=97.47 E-value=0.00046 Score=59.23 Aligned_cols=98 Identities=19% Similarity=0.200 Sum_probs=65.9
Q ss_pred cChHHHHHHHHHHHHHHhhhcC-CC--eEEEEccCCCCCCCCCcccEEEeccccCCC---------------------C-
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCD-PQ--IITQASSLSQLPVESFSIDTVLSISSSHEL---------------------P- 73 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~-~~--v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~---------------------~- 73 (297)
++..|+++.|.+.++++..... .+ +.++.+++.. ++.+..||+|+++..+... .
T Consensus 48 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (188)
T PRK14968 48 VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREV 126 (188)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHH
Confidence 3444777888888877664432 22 7888888765 3456689999987543220 0
Q ss_pred hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
...+++++.++|||||.+++...... . .+.+...+..+||....
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~~~~~---~----~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQSSLT---G----EDEVLEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEcccC---C----HHHHHHHHHHCCCeeee
Confidence 24579999999999999987764321 1 12566678888997544
No 73
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.46 E-value=8.2e-05 Score=67.74 Aligned_cols=80 Identities=14% Similarity=0.006 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTS 99 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~ 99 (297)
.-|.+-.|++.++.- +.-...+...++|-+.|+|.+++||+|++...+||+. .+..+.++..+|||.|.|+-.-.+..
T Consensus 100 ~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 100 MMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred eeecchHHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 346666777776531 1112345677999999999999999999999999998 77889999999999999986655544
Q ss_pred Cc
Q 022411 100 DK 101 (297)
Q Consensus 100 ~~ 101 (297)
++
T Consensus 179 TL 180 (325)
T KOG2940|consen 179 TL 180 (325)
T ss_pred cH
Confidence 43
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.46 E-value=0.00017 Score=64.35 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=58.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~ 92 (297)
.++..|++++|+..|+++..... .++.+..+++..++ .+||+|++...+++++ ...+++++++++++++.+.
T Consensus 79 ~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 79 IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 34456888999999988765433 47999999998876 7899999988877765 3678999999999877666
Q ss_pred EE
Q 022411 93 IY 94 (297)
Q Consensus 93 i~ 94 (297)
+.
T Consensus 156 ~~ 157 (219)
T TIGR02021 156 FA 157 (219)
T ss_pred EC
Confidence 53
No 75
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.45 E-value=0.00056 Score=64.67 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=64.4
Q ss_pred CeEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC-CCCc-------cc---h-----
Q 022411 42 QIITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL-TSDK-------GD---V----- 104 (297)
Q Consensus 42 ~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~-~~~~-------g~---~----- 104 (297)
.+.++--.++.||. .+.||+|++.-++.|.. +-..|.++...|+|||.|++.... ++.. +. .
T Consensus 166 ~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~F 244 (315)
T PF08003_consen 166 PVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWF 244 (315)
T ss_pred cEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEE
Confidence 34444457888887 78999999988776665 888999999999999999977643 1110 00 0
Q ss_pred HHHHHHHHHHHHHCCcccccchhccc
Q 022411 105 DKAISALEGKLLLAGFLDAQRIQLKS 130 (297)
Q Consensus 105 ~~~~~~l~~~L~laGFv~v~~~~~kp 130 (297)
-.+...+...|..+||.++....+.+
T Consensus 245 iPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 245 IPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred eCCHHHHHHHHHHcCCceEEEecCcc
Confidence 02346888999999999998765443
No 76
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.42 E-value=0.00021 Score=63.42 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=62.0
Q ss_pred cCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEE
Q 022411 15 EDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTI 91 (297)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l 91 (297)
.|-.|+..|.++..++.+++.+++....|.....|+....++ ..||+|++..+++++++ +.++..+...++|||++
T Consensus 51 ~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 51 QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYN 129 (192)
T ss_dssp TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEE
Confidence 466778778888777777665555666799999999988876 67999999888888872 57899999999999999
Q ss_pred EEEecC
Q 022411 92 LIYKKL 97 (297)
Q Consensus 92 ~i~~~~ 97 (297)
++....
T Consensus 130 li~~~~ 135 (192)
T PF03848_consen 130 LIVTFM 135 (192)
T ss_dssp EEEEEB
T ss_pred EEEEec
Confidence 886543
No 77
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.41 E-value=0.00023 Score=63.44 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=57.6
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
++..|++++|++.|+++. +++.+.++++.. |+++++||+|++..+++|++ ...++++++|++ ++.++|.+
T Consensus 70 v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 70 IYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 445678889999887643 456788888887 88999999999999988876 367899999998 57888877
Q ss_pred cC
Q 022411 96 KL 97 (297)
Q Consensus 96 ~~ 97 (297)
..
T Consensus 143 ~~ 144 (204)
T TIGR03587 143 YY 144 (204)
T ss_pred ee
Confidence 54
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.39 E-value=0.00024 Score=63.19 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=57.5
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh----HHHHHHHHhcccCCcEEEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~----~~~L~ei~RvLKPGG~l~i~ 94 (297)
++..|+++.-+++|+++... .++|.|+++++... .+.+.||+|+..-.++++.+ ..++..+...|+|||.|++.
T Consensus 68 LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 68 LLAVDISPRALARARERLAG-LPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp EEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34558889999999988754 47899999999765 57899999999988888852 46889999999999999998
Q ss_pred ecC
Q 022411 95 KKL 97 (297)
Q Consensus 95 ~~~ 97 (297)
.+.
T Consensus 146 ~~r 148 (201)
T PF05401_consen 146 HAR 148 (201)
T ss_dssp EE-
T ss_pred Eec
Confidence 764
No 79
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.37 E-value=0.00027 Score=65.92 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=64.3
Q ss_pred cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411 4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS 68 (297)
Q Consensus 4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~ 68 (297)
++.|.+||-+-- +..|+...++++..+.+++++... ...+.+...|...++. +||.|+++-.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 466788888743 445566678888889888877654 3468889999887753 9999999988
Q ss_pred cCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 69 SHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+.|+. ...+++++.|.|||||++++....
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 88875 378999999999999999987543
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.34 E-value=0.00072 Score=60.32 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=61.9
Q ss_pred ccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411 5 KMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS 68 (297)
Q Consensus 5 ~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~ 68 (297)
+.|.+||-+-.|+. |...|..+.|.+.|+++++.. ..++.++.+|+.........||+|++...
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 45667777655422 445566788999998877654 45799999998766545578999998765
Q ss_pred cCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 69 SHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..++ ...+.+.|+|||+|++..
T Consensus 156 ~~~~-----~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPKI-----PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccc-----cHHHHHhcCcCcEEEEEE
Confidence 4443 356889999999998754
No 81
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.30 E-value=0.00057 Score=61.44 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCccChHHHHHHHHHHHHHHhhh-------------cCCCeEEEEccCCCCCCC-CCcccEEEeccccCCCCh---HHHH
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQ-------------CDPQIITQASSLSQLPVE-SFSIDTVLSISSSHELPG---DQLL 78 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~-------------~~~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~~---~~~L 78 (297)
|-.|+..|+++..++.+.+.... ...+|.++++|+..++.. ...||.|+-...++++++ ...+
T Consensus 56 G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~ 135 (213)
T TIGR03840 56 GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYA 135 (213)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHH
Confidence 55677789999888875432110 134689999999887643 357999998887888873 5689
Q ss_pred HHHHhcccCCcEEEEEec
Q 022411 79 EEISRVLKPGGTILIYKK 96 (297)
Q Consensus 79 ~ei~RvLKPGG~l~i~~~ 96 (297)
+.+.++|||||++++...
T Consensus 136 ~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 136 AHLLALLPPGARQLLITL 153 (213)
T ss_pred HHHHHHcCCCCeEEEEEE
Confidence 999999999998766643
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.30 E-value=0.00043 Score=67.66 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-------hHHHHHHHHhcccCCcE
Q 022411 21 VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGT 90 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~ 90 (297)
..|+...|++.+.+++... ..++.++.+|+..+ ++++++||.|+.++...|.. ...++.+++|+|+|||.
T Consensus 151 GIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 151 GIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT 230 (390)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence 4567778888887766543 46899999998654 57899999999988665542 15799999999999999
Q ss_pred EEEEec
Q 022411 91 ILIYKK 96 (297)
Q Consensus 91 l~i~~~ 96 (297)
+.+..-
T Consensus 231 l~l~TD 236 (390)
T PRK14121 231 LELRTD 236 (390)
T ss_pred EEEEEE
Confidence 998764
No 83
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.29 E-value=0.00087 Score=59.94 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=61.5
Q ss_pred cccCceEEEeecCCccChHHHHHHHHHHHHH-Hhh----hcCCCeEEEEccCCCCC--------CCCCcccEEEeccccC
Q 022411 4 GKMQSAVLALSEDKILPVSAVLNAIRDLGDE-AVE----QCDPQIITQASSLSQLP--------VESFSIDTVLSISSSH 70 (297)
Q Consensus 4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~~-~~~----~~~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~~~ 70 (297)
.+.|.+||-|--|+..-...+.+.+-....- .+. ...+++.++++|+...+ +.+.+||+|++....+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 4567788888666655333232221000000 000 01246889999998853 6788999999987655
Q ss_pred CCC-h-----------HHHHHHHHhcccCCcEEEEEecCC
Q 022411 71 ELP-G-----------DQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 71 ~~~-~-----------~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
+.. + ..++++++|+|||||.|++..+..
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 542 1 358999999999999999987764
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.20 E-value=0.00055 Score=65.91 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=58.4
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccCCcEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l 91 (297)
.++..|+++.|++.|+++++.......+..+|+... ..+.||+|+++..+|+.. ...++.++.+.|||||.|
T Consensus 222 ~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 222 RLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence 344557788899999887655444456666776542 357899999999888632 378899999999999999
Q ss_pred EEEecC
Q 022411 92 LIYKKL 97 (297)
Q Consensus 92 ~i~~~~ 97 (297)
+|....
T Consensus 300 ~iVan~ 305 (342)
T PRK09489 300 RIVANA 305 (342)
T ss_pred EEEEeC
Confidence 887653
No 85
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.09 E-value=0.0014 Score=59.95 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=59.7
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecCCCCccchH--------------
Q 022411 43 IITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKLTSDKGDVD-------------- 105 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~-------------- 105 (297)
+..+..+-..-|+..+++|+|+.++++.-+++ ..++..++++|||||.|++.+.+...+..+.
T Consensus 128 v~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 128 VWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred ceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 33333333344778899999999998877763 7899999999999999999987653221110
Q ss_pred --------HHHHHHHHHHHHCCcccccc
Q 022411 106 --------KAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 106 --------~~~~~l~~~L~laGFv~v~~ 125 (297)
-..+.+...+..+||..++.
T Consensus 208 gDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 208 GDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred cCCceeeeccHHHHHHHHHhcccchhcc
Confidence 12356778899999987753
No 86
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.07 E-value=0.00096 Score=62.87 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=58.3
Q ss_pred CCccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCC-CCCCCCc----ccEEEeccccCCCC---hHHHHHHHHhcc
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQ-LPVESFS----IDTVLSISSSHELP---GDQLLEEISRVL 85 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~-Lp~~d~s----fD~Vls~~~~~~~~---~~~~L~ei~RvL 85 (297)
+..++..|++++|++.+++++.... .++.++++|+.. +++.... ..+++....+++++ ...+|++++++|
T Consensus 88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L 167 (301)
T TIGR03438 88 PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLL 167 (301)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhc
Confidence 3456677899999999988765544 356778999875 4555443 22344445677776 356899999999
Q ss_pred cCCcEEEEEecC
Q 022411 86 KPGGTILIYKKL 97 (297)
Q Consensus 86 KPGG~l~i~~~~ 97 (297)
+|||.|+|....
T Consensus 168 ~pgG~~lig~d~ 179 (301)
T TIGR03438 168 GPGGGLLIGVDL 179 (301)
T ss_pred CCCCEEEEeccC
Confidence 999999976543
No 87
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.05 E-value=0.0033 Score=57.57 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred cChHHHHHHHHHHHHHHhh-hcCCCeEEEEccCCCCCCCCCcccEEEeccccCC------C-------------------
Q 022411 19 LPVSAVLNAIRDLGDEAVE-QCDPQIITQASSLSQLPVESFSIDTVLSISSSHE------L------------------- 72 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~-~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~------~------------------- 72 (297)
++..|+++.+++.++++.. ....++.++.+++.. ++.+++||+|+++..+.. +
T Consensus 135 v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g 213 (275)
T PRK09328 135 VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG 213 (275)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence 3455778888999888765 334579999998854 334679999999743210 0
Q ss_pred -C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 73 -P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 73 -~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
. ...++.++.++|+|||.+++..... ..+.+...+..+||.++..
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~g~~--------~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEIGYD--------QGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEECch--------HHHHHHHHHHhCCCceeEE
Confidence 0 1456778889999999999843211 1125666777899987654
No 88
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.04 E-value=0.0029 Score=57.50 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccC-CCCCCCCCcccEEEeccccCCC---------C---hHHHHHHHHhcccC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSL-SQLPVESFSIDTVLSISSSHEL---------P---GDQLLEEISRVLKP 87 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~-~~Lp~~d~sfD~Vls~~~~~~~---------~---~~~~L~ei~RvLKP 87 (297)
.-|++..|+++|.++. .. -.++.+|+ +-+||..++||.++++.+++|+ | ...++..++.+|++
T Consensus 77 GvDiSpsML~~a~~~e--~e--gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r 152 (270)
T KOG1541|consen 77 GVDISPSMLEQAVERE--LE--GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR 152 (270)
T ss_pred eecCCHHHHHHHHHhh--hh--cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence 3488999999998632 11 23444444 7899999999999999876663 1 13568889999999
Q ss_pred CcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411 88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
|++.+++-.... ....+-+....+.+||--
T Consensus 153 g~raV~QfYpen-----~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 153 GARAVLQFYPEN-----EAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred CceeEEEecccc-----hHHHHHHHHHHHhhccCC
Confidence 999998865432 223446677889999974
No 89
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.04 E-value=0.0012 Score=58.78 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=58.1
Q ss_pred CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411 7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (297)
Q Consensus 7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~ 72 (297)
+.+||-|--|+. ++..|+++.|++.|+++..... .++.+..+++ +..+++||+|++...++|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcchhhcC
Confidence 456777755443 3345667899999988764432 4788998884 3446889999999888776
Q ss_pred C---hHHHHHHHHhcccCCcEEE
Q 022411 73 P---GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 73 ~---~~~~L~ei~RvLKPGG~l~ 92 (297)
+ ...+++++.+.+++++.+.
T Consensus 141 ~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 141 PQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CHHHHHHHHHHHHhhcCCeEEEE
Confidence 6 3567888888776555443
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.03 E-value=0.0011 Score=64.63 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=58.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC----CCeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccC
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD----PQIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKP 87 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~----~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKP 87 (297)
.++..|.++.|++.|+++++... .++.+..+++... ++..+||+|+++..+|... ...++.+++|+|+|
T Consensus 254 ~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp 332 (378)
T PRK15001 254 KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 332 (378)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc
Confidence 45566888899999988765432 3678888877532 3456899999998777542 25788999999999
Q ss_pred CcEEEEEec
Q 022411 88 GGTILIYKK 96 (297)
Q Consensus 88 GG~l~i~~~ 96 (297)
||.|++...
T Consensus 333 GG~L~iV~n 341 (378)
T PRK15001 333 NGELYIVAN 341 (378)
T ss_pred CCEEEEEEe
Confidence 999998853
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.99 E-value=0.002 Score=47.74 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=56.4
Q ss_pred ccChHHHHHHHHHHHHHHh-hhcCCCeEEEEccCCCCCC-CCCcccEEEeccccCC-CC-hHHHHHHHHhcccCCcEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAV-EQCDPQIITQASSLSQLPV-ESFSIDTVLSISSSHE-LP-GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~-~~~~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~-~~-~~~~L~ei~RvLKPGG~l~i 93 (297)
.+...|+.+.+...+++.. .....++.+..++...... ....||+|++...+++ .. ....+..+.+.|+|||.+++
T Consensus 23 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 23 RVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred EEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 3345556666666665322 2235678888888877653 5678999999988776 44 68899999999999999987
Q ss_pred E
Q 022411 94 Y 94 (297)
Q Consensus 94 ~ 94 (297)
.
T Consensus 103 ~ 103 (107)
T cd02440 103 T 103 (107)
T ss_pred E
Confidence 5
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.95 E-value=0.0026 Score=58.20 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcCC--CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDP--QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~--~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
+...|+++.|++.|+++...... .+.+ +..+.+||+|+++...+. ...++.++.++|||||++++...
T Consensus 145 v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~~~~~~fD~Vvani~~~~--~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 145 VLAVDIDPQAVEAARENAELNGVELNVYL--------PQGDLKADVIVANILANP--LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceEEE--------ccCCCCcCEEEEcCcHHH--HHHHHHHHHHhcCCCcEEEEEEC
Confidence 44668888999999887654322 2222 222237999998753221 35688999999999999998865
Q ss_pred CCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 97 LTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
.. .....+...+...||..+..
T Consensus 215 ~~-------~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 215 LE-------EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred cH-------hhHHHHHHHHHHCCCEEEEE
Confidence 42 12336677888899986653
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.90 E-value=0.00094 Score=52.94 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=58.1
Q ss_pred CccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC--CCCCcccEEEeccccCCCC---------hHHHHHHHHh
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSSHELP---------GDQLLEEISR 83 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~R 83 (297)
..+...|+.+...+.++.+.... ..++.++++|+..++ +++++||+|+++..+.... ...++.++.+
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR 103 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 33445566677788888766543 457999999998775 7899999999987654321 2578999999
Q ss_pred cccCCcEEEEEec
Q 022411 84 VLKPGGTILIYKK 96 (297)
Q Consensus 84 vLKPGG~l~i~~~ 96 (297)
.|||||.+++..+
T Consensus 104 ~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 104 LLKPGGVLVFITP 116 (117)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEeC
Confidence 9999999988654
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.89 E-value=0.004 Score=55.24 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=60.5
Q ss_pred ccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411 5 KMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (297)
Q Consensus 5 ~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~ 71 (297)
+.+.+||-+-.|+... ..|..+.|++.++++.+.. ..++.++.+++.....+.+.||+|++....++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE 156 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh
Confidence 3466788876655432 2344577888888776554 44689999987654334578999999875554
Q ss_pred CChHHHHHHHHhcccCCcEEEEEec
Q 022411 72 LPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
+ ..++++.|+|||++++...
T Consensus 157 ~-----~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 I-----PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h-----hHHHHHhcCCCcEEEEEEc
Confidence 3 3567899999999987654
No 95
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.88 E-value=0.0018 Score=55.81 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=56.3
Q ss_pred cChHHHHHHHHHHHHHHhhhcCC-CeEEEEccCCCCCCCCCcccEEEeccccCCCC------hHHHHHHHHhcccCCcEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDP-QIITQASSLSQLPVESFSIDTVLSISSSHELP------GDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~-~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l 91 (297)
++..|..+.+++.++++++.... ++.+..+|+.. ++++..||+|+++..++.-. ...++.+..+.|||||.|
T Consensus 58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 44557788888988887765433 38888888754 23478999999998766443 367899999999999999
Q ss_pred EEEecC
Q 022411 92 LIYKKL 97 (297)
Q Consensus 92 ~i~~~~ 97 (297)
++....
T Consensus 137 ~lv~~~ 142 (170)
T PF05175_consen 137 FLVINS 142 (170)
T ss_dssp EEEEET
T ss_pred EEEeec
Confidence 766543
No 96
>PRK01581 speE spermidine synthase; Validated
Probab=96.87 E-value=0.0065 Score=59.08 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=74.1
Q ss_pred cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHH--h---h---hcCCCeEEEEccCCC-CCCCCCcccE
Q 022411 6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEA--V---E---QCDPQIITQASSLSQ-LPVESFSIDT 62 (297)
Q Consensus 6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~--~---~---~~~~~v~~~~~d~~~-Lp~~d~sfD~ 62 (297)
+-.+||++--|... +..++.++|++.|++. . . ..++++.++.+|+.. ++-..+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 34467777655333 2336777899998851 1 1 126789999998875 4444678999
Q ss_pred EEeccccC------CCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411 63 VLSISSSH------ELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 63 Vls~~~~~------~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (297)
|++...-. .+....+++.+.+.|+|||.|++...... ........+.+.+..+||...
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~---~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA---DAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh---hhHHHHHHHHHHHHHhCCceE
Confidence 99875321 11246789999999999999987743221 111222346677888888654
No 97
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.83 E-value=0.0026 Score=57.44 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=62.9
Q ss_pred CceEEEeec------------CCccChHHHHHHHHHHHHHH--hh-----------hcCCCeEEEEccCCCCCCC-CCcc
Q 022411 7 QSAVLALSE------------DKILPVSAVLNAIRDLGDEA--VE-----------QCDPQIITQASSLSQLPVE-SFSI 60 (297)
Q Consensus 7 ~~~VLll~~------------~~~vt~~dlse~m~~~A~~~--~~-----------~~~~~v~~~~~d~~~Lp~~-d~sf 60 (297)
+.+||.+-- |..|+..|+++..++.+... .. ....+|.+.++|+..++.. ...|
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~f 117 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADV 117 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCe
Confidence 456776643 55666778888777765321 11 0135789999999888543 2589
Q ss_pred cEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411 61 DTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 61 D~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~ 94 (297)
|.|+-...++++++ ...++.+.++|+|||++++.
T Consensus 118 d~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 118 DAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred eEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99998888888872 68899999999999975543
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.78 E-value=0.007 Score=56.65 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=64.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC-------------CCC---------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH-------------ELP--------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~-------------~~~--------- 73 (297)
.++..|+++.+++.|++++... ..++.++.+|+.. +++..+||+|+++-... +-+
T Consensus 147 ~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d 225 (284)
T TIGR03533 147 EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED 225 (284)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc
Confidence 3456678899999999887654 2468999999743 23466899999973211 111
Q ss_pred ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
...++.++.+.|+|||++++..... . ..+...+..+||.-
T Consensus 226 Gl~~~~~il~~a~~~L~~gG~l~~e~g~~------~---~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 226 GLDLVRRILAEAADHLNENGVLVVEVGNS------M---EALEEAYPDVPFTW 269 (284)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHHhCCCce
Confidence 1456888899999999998654321 1 24556666678764
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.77 E-value=0.0072 Score=59.72 Aligned_cols=100 Identities=15% Similarity=0.126 Sum_probs=67.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCC-CCcccEEEeccccCCC----------------------C-
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVE-SFSIDTVLSISSSHEL----------------------P- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~----------------------~- 73 (297)
.++..|++++|++.|+++++....++.++.+|+....++ ..+||+|+++...... .
T Consensus 277 ~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 277 FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 344568889999999988766555899999998654332 4579999997642110 0
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
...++.++.+.|+|||.+++..... ..+.+...+...||..++.
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEiG~~--------Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEHGFD--------QGAAVRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECcc--------HHHHHHHHHHHCCCcEEEE
Confidence 1256667778999999987543221 1125666777789976543
No 100
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.71 E-value=0.0021 Score=60.57 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCeEEEEccCCCCCCC-CCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEE
Q 022411 41 PQIITQASSLSQLPVE-SFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 41 ~~v~~~~~d~~~Lp~~-d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~ 94 (297)
..|.|...++...+++ .+.||+|++.+++.++. ...++..+++.|+|||.|++-
T Consensus 204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4678888898875544 67899999999888886 478999999999999998764
No 101
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0086 Score=55.27 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=71.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CC-CeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DP-QIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~-~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.|+.-+.-++..+.|++|.+.. .. ++.+..+|+.+.-+++ .||+|+.-..- +..++..+..+|||||.+.+..
T Consensus 121 ~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~LDmp~----PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 121 HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFLDLPD----PWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEEcCCC----hHHHHHHHHHHhCCCcEEEEEc
Confidence 3344466778889999887653 33 4888899998776665 89999875421 5689999999999999999988
Q ss_pred cCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411 96 KLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 96 ~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (297)
+.- .... .....|...||++++.++
T Consensus 196 P~v---eQv~----kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 196 PTV---EQVE----KTVEALRERGFVDIEAVE 220 (256)
T ss_pred CCH---HHHH----HHHHHHHhcCccchhhhe
Confidence 753 2222 333456667999988765
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.66 E-value=0.0049 Score=58.92 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=62.9
Q ss_pred cccCceEEEeecCCc---------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411 4 GKMQSAVLALSEDKI---------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS 67 (297)
Q Consensus 4 ~~~~~~VLll~~~~~---------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~ 67 (297)
++.+.+||.+-.|+. |...|.+++|++.|++++... ..++.++.+|+...+.....||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 345678888866543 334467789999998876543 3568999999877665667899999876
Q ss_pred ccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 68 SSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
....+ ...+.+.|+|||++++..
T Consensus 158 g~~~i-----p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV-----PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chHHh-----HHHHHHhcCCCCEEEEEe
Confidence 54432 345788999999998754
No 103
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.66 E-value=0.0055 Score=58.41 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=49.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhc------CCCeEEEEccCCCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCC
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPG 88 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~------~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPG 88 (297)
.|+..|+++.|++.|+++.... ..++.|..+|++.+ +++||+|++...++|++. ..+++.+.+ +.+|
T Consensus 168 ~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g 243 (315)
T PLN02585 168 IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK 243 (315)
T ss_pred EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC
Confidence 4556688999999999876543 34678888888755 478999999988877763 234555554 4555
Q ss_pred cEEE
Q 022411 89 GTIL 92 (297)
Q Consensus 89 G~l~ 92 (297)
|.++
T Consensus 244 ~liI 247 (315)
T PLN02585 244 RLII 247 (315)
T ss_pred EEEE
Confidence 5544
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.59 E-value=0.014 Score=53.77 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=73.1
Q ss_pred CccChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCCC--CCCCcccEEEecccc-----------------CCCC--
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQLP--VESFSIDTVLSISSS-----------------HELP-- 73 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~-----------------~~~~-- 73 (297)
+.+...++.++|.+.|+++++. ...+|+++++|+.++. ..-.+||+|+++-.+ |...
T Consensus 69 a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~ 148 (248)
T COG4123 69 AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD 148 (248)
T ss_pred CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC
Confidence 3344557788999999987755 3678999999998663 445579999998521 1111
Q ss_pred hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchhc
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQL 128 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~~ 128 (297)
.+.+++-..++|||||++.+.-.. ....++...+...+|.-.....+
T Consensus 149 le~~i~~a~~~lk~~G~l~~V~r~--------erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 149 LEDLIRAAAKLLKPGGRLAFVHRP--------ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred HHHHHHHHHHHccCCCEEEEEecH--------HHHHHHHHHHHhcCCCceEEEEe
Confidence 478889999999999999877542 23335666777778776544443
No 105
>PRK00811 spermidine synthase; Provisional
Probab=96.57 E-value=0.007 Score=56.64 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=62.3
Q ss_pred cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhh------cCCCeEEEEccCCCC-CCCCCcccEEE
Q 022411 6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQ------CDPQIITQASSLSQL-PVESFSIDTVL 64 (297)
Q Consensus 6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~------~~~~v~~~~~d~~~L-p~~d~sfD~Vl 64 (297)
+..+||.+-.|... +..++.++|++.|++.... .++++.++.+|+... ....+.||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 34567777554332 3445677888888875432 257899999998643 33467899999
Q ss_pred eccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411 65 SISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 65 s~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
+.....+.+ ...+++.+.+.|+|||.+++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 876433322 3678899999999999998753
No 106
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.56 E-value=0.0014 Score=59.12 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=69.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i 93 (297)
.|.+.+.++..++.|++..... .....+.+..++..-.+...||+|++.+.+.|+. .-.+|+.....|+|+|.++|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 3445567778888887655443 3335566778887755567999999999988887 35788999999999999999
Q ss_pred EecCCCCcc--------chHHHHHHHHHHHHHCCcccccc
Q 022411 94 YKKLTSDKG--------DVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 94 ~~~~~~~~g--------~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
.+....... .+..+.+.+.+.+..||+.-+..
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 986533211 11223457888899999987654
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.55 E-value=0.005 Score=57.63 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=60.6
Q ss_pred ccCceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411 5 KMQSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSS 69 (297)
Q Consensus 5 ~~~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~ 69 (297)
+.|.+||-+-.|+. +...|+.+.|++.|++++... ...+.+..++.. ++.++.||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 44566776655443 334577788899888876543 234555555533 3446799999997643
Q ss_pred CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 70 HELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 70 ~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+. ...++.++.++|||||+|++....
T Consensus 236 ~~--l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 EV--IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HH--HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 22 357899999999999999987654
No 108
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.52 E-value=0.0084 Score=53.87 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=58.5
Q ss_pred cccCceEEEeecCCccC---hH------------HHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411 4 GKMQSAVLALSEDKILP---VS------------AVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSIS 67 (297)
Q Consensus 4 ~~~~~~VLll~~~~~vt---~~------------dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~ 67 (297)
++.|.+||-+-.|+.-. +. +..+.+.+.|+++.+.. ..++.++.+|....--....||.|++..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEee
Confidence 46788999997764332 22 22367888888877654 4589999999865433567899999988
Q ss_pred ccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411 68 SSHELPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
....+| ..+.+.||+||+|++-..
T Consensus 150 a~~~ip-----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 150 AVPEIP-----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BBSS-------HHHHHTEEEEEEEEEEES
T ss_pred ccchHH-----HHHHHhcCCCcEEEEEEc
Confidence 766544 457788999999997543
No 109
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.50 E-value=0.0036 Score=55.74 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.+|.|...++.+.+...+.||+|++.+++.++. ...++..+++.|+|||.|++-.
T Consensus 118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 368899988888555678899999999999998 3789999999999999999753
No 110
>PRK03612 spermidine synthase; Provisional
Probab=96.47 E-value=0.017 Score=58.65 Aligned_cols=116 Identities=18% Similarity=0.215 Sum_probs=75.5
Q ss_pred ccCceEEEeecCCcc--------------ChHHHHHHHHHHHHHH--hhh------cCCCeEEEEccCCC-CCCCCCccc
Q 022411 5 KMQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEA--VEQ------CDPQIITQASSLSQ-LPVESFSID 61 (297)
Q Consensus 5 ~~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~--~~~------~~~~v~~~~~d~~~-Lp~~d~sfD 61 (297)
++..+||.+-.|.-. +..|+.++|++.++++ ... .+++++++.+|+.. +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 345567777554433 3445667888888872 111 24789999998865 233357899
Q ss_pred EEEeccccCCCC------hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 62 TVLSISSSHELP------GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 62 ~Vls~~~~~~~~------~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
+|++.....+.+ ..++++.+.+.|||||.+++...... .. ......+.+.+...|| .+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~-~~~~~~i~~~l~~~gf-~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FA-PKAFWSIEATLEAAGL-ATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc--cc-hHHHHHHHHHHHHcCC-EEE
Confidence 999986543322 35689999999999999987643221 11 2233467778888999 443
No 111
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.47 E-value=0.01 Score=55.43 Aligned_cols=98 Identities=19% Similarity=0.197 Sum_probs=63.6
Q ss_pred cChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEecccc-------------CCCC----------
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP---------- 73 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-------------~~~~---------- 73 (297)
++..|+++.+++.|++++.... .++.++.+|+.. +++...||+|+++..+ +|-|
T Consensus 141 v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dg 219 (284)
T TIGR00536 141 VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDG 219 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcH
Confidence 4455778889999998775442 349999998865 3445589999997321 1111
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH-HCCcccccc
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL-LAGFLDAQR 125 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~-laGFv~v~~ 125 (297)
...++.++.+.|+|||.+++...... .. .+...+. ..||.+++.
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g~~q-----~~---~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIGNWQ-----QK---SLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECccH-----HH---HHHHHHHhcCCCceeEE
Confidence 13578889999999999986543210 11 3344444 368876654
No 112
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.46 E-value=0.0055 Score=59.54 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=49.7
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 43 IITQASSLSQLPVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..++.+++-+.|+++++||.+.+.-+.+|.+ ...+++|++|+|||||.+...++.
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 3348889999999999999999999999998 899999999999999999988764
No 113
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.45 E-value=0.0076 Score=59.55 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=57.2
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCC--CCCCcccEEEeccc------------cCCCC-h---------
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLP--VESFSIDTVLSISS------------SHELP-G--------- 74 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~------------~~~~~-~--------- 74 (297)
++..|.++.|++.++++++....++.++.+|+..++ ++.++||.|++... ..|.. .
T Consensus 271 v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~ 350 (427)
T PRK10901 271 VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAAL 350 (427)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHH
Confidence 445577788999998887665556788899988764 34678999996432 11211 1
Q ss_pred -HHHHHHHHhcccCCcEEEEEecC
Q 022411 75 -DQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 75 -~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..++.++++.|||||+|++.+-.
T Consensus 351 q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 351 QSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 36899999999999999987743
No 114
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.0049 Score=57.87 Aligned_cols=92 Identities=12% Similarity=0.189 Sum_probs=71.6
Q ss_pred cccCceEEEeec-------------CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411 4 GKMQSAVLALSE-------------DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS 68 (297)
Q Consensus 4 ~~~~~~VLll~~-------------~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~ 68 (297)
.+-|.+||-+-- +..|+..++++++.+.+++++... ..+++++..|...+. +.||.|+|.-.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgm 146 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGM 146 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhh
Confidence 345667776622 455667788999999999877654 347888888887664 44999999988
Q ss_pred cCCCC---hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 69 SHELP---GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 69 ~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
++|+- -...++.+.++|+|||++++.....
T Consensus 147 fEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 147 FEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 88775 4789999999999999999887553
No 115
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.39 E-value=0.0029 Score=55.36 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC-C-CCCCCcccEEEeccccCCCC-hHHHHHHHHhcccC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-L-PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKP 87 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~-L-p~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKP 87 (297)
..|++++|++.++. .++.++.+++.. + ++++++||+|+++.++||++ +..+++++.|++++
T Consensus 41 giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 41 GIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 34566677766643 246778888865 5 47788999999999999998 78899999998775
No 116
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.35 E-value=0.023 Score=51.28 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCC--cEEEEEecC
Q 022411 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPG--GTILIYKKL 97 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPG--G~l~i~~~~ 97 (297)
..+|.++.+|+. -|+|. +|+|+....+|.++ ...+|+++++.|+|| |+|+|.+..
T Consensus 142 ~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred ccccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 568999999996 45555 99999999999887 367999999999999 999999876
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.35 E-value=0.016 Score=50.48 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=55.5
Q ss_pred cccCceEEEeecCCccChHHHHHHHHHHHH----HHhhh-cCCCeEEEEccCCCCC--------CCCCcccEEEecccc-
Q 022411 4 GKMQSAVLALSEDKILPVSAVLNAIRDLGD----EAVEQ-CDPQIITQASSLSQLP--------VESFSIDTVLSISSS- 69 (297)
Q Consensus 4 ~~~~~~VLll~~~~~vt~~dlse~m~~~A~----~~~~~-~~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~~- 69 (297)
++.|.+||-+-.|+..-...+...+...++ ..... ...++.+..+++.+.+ ++.++||+|++....
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 456788999877665422222221111000 00000 1236777888876543 457789999986432
Q ss_pred ---CC-CC-------hHHHHHHHHhcccCCcEEEEEecC
Q 022411 70 ---HE-LP-------GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 70 ---~~-~~-------~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+| +. ...++.+++++|+|||++++..+.
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 12 11 157899999999999999986544
No 118
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.31 E-value=0.0032 Score=58.93 Aligned_cols=71 Identities=28% Similarity=0.383 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 23 AVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 23 dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
|+....+..++.. +. .....+|+.++|+.+.+||.+++..+.||+. ...+++|+.|+|+|||...|+.+..
T Consensus 72 D~c~~l~~~ak~~----~~-~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 72 DLCTGLLGGAKRS----GG-DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred chhhhhccccccC----CC-ceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 5555555544321 11 1567889999999999999999999999986 3789999999999999999888753
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.30 E-value=0.0092 Score=59.08 Aligned_cols=79 Identities=22% Similarity=0.164 Sum_probs=57.5
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC----CCCCcccEEEeccc------cCCCC--------------
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP----VESFSIDTVLSISS------SHELP-------------- 73 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp----~~d~sfD~Vls~~~------~~~~~-------------- 73 (297)
++..|+.+.|++.++++++.. ..++.++.+|+..++ +..++||.|++... ++..+
T Consensus 280 v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l 359 (434)
T PRK14901 280 IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQEL 359 (434)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHH
Confidence 334577889999998887655 346899999998776 45678999997421 11111
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|.++++.|||||+|++.+-.
T Consensus 360 ~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 360 APLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 146799999999999999877643
No 120
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.28 E-value=0.0065 Score=53.27 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=53.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.++..|.++.|++.++++++.. ..+++++.+++.. ++.-...+|.|+.... .....++.+++++|+|||++++..
T Consensus 66 ~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 66 RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3444577788999998876543 3578899888754 3322234677655321 124688999999999999999887
Q ss_pred cC
Q 022411 96 KL 97 (297)
Q Consensus 96 ~~ 97 (297)
..
T Consensus 143 ~~ 144 (196)
T PRK07402 143 SS 144 (196)
T ss_pred ec
Confidence 54
No 121
>PHA03411 putative methyltransferase; Provisional
Probab=96.27 E-value=0.01 Score=55.61 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=68.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC---------------------hHH
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP---------------------GDQ 76 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---------------------~~~ 76 (297)
.++..|+++.|++.++++ .+++.++.+|+..+.. ..+||+|+++..+++.+ ...
T Consensus 90 ~V~gVDisp~al~~Ar~n----~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~ 164 (279)
T PHA03411 90 KIVCVELNPEFARIGKRL----LPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQ 164 (279)
T ss_pred EEEEEECCHHHHHHHHHh----CcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHH
Confidence 444557778888888764 2478899999987753 46899999987666533 134
Q ss_pred HHHHHHhcccCCcEEEEEecCCCC-ccchHHHHHHHHHHHHHCCcccc
Q 022411 77 LLEEISRVLKPGGTILIYKKLTSD-KGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 77 ~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~~~~~l~~~L~laGFv~v 123 (297)
.+....+.|+|+|.+++.-....- .+.+ ...++++.|..+||+--
T Consensus 165 ~l~~v~~~L~p~G~~~~~yss~~~y~~sl--~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 165 KFADVGYFIVPTGSAGFAYSGRPYYDGTM--KSNKYLKWSKQTGLVTY 210 (279)
T ss_pred HHhhhHheecCCceEEEEEeccccccccC--CHHHHHHHHHhcCcEec
Confidence 567778999999988766332111 1111 13478889999999853
No 122
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.20 E-value=0.01 Score=56.34 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=63.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC--CCeEEEEccCCCCCCCCCcccEEEecccc-------------CCCC---------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD--PQIITQASSLSQLPVESFSIDTVLSISSS-------------HELP--------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~-------------~~~~--------- 73 (297)
.++..|+++.+++.|++++.... .++.++.+|+.. ++++.+||+|+++-.+ ++.|
T Consensus 159 ~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d 237 (307)
T PRK11805 159 EVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD 237 (307)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence 45566888999999998876542 469999999753 2345689999997321 1111
Q ss_pred ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (297)
...+++++.+.|+|||++++..... . ..+...+...||+-.
T Consensus 238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g~~------~---~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 238 GLDLVRRILAEAPDYLTEDGVLVVEVGNS------R---VHLEEAYPDVPFTWL 282 (307)
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEECcC------H---HHHHHHHhhCCCEEE
Confidence 1467888999999999998753321 1 134445555676543
No 123
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.0014 Score=56.32 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=43.4
Q ss_pred eEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 43 IITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+..+.-.....+|.++|.|+|++-.++.|+. ...++++.+|+|||||+|.|..+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 4444434445689999999999987776665 468899999999999999998664
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.06 E-value=0.011 Score=54.60 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=57.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccc---c-----------CCCC---------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISS---S-----------HELP--------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~---~-----------~~~~--------- 73 (297)
.+..-|+++.+++.++++++.. ..++.+..+|+..++.....||+|++... . .+.+
T Consensus 98 ~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~ 177 (264)
T TIGR00446 98 AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISAL 177 (264)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHH
Confidence 3445678888999888877654 34688889998877666667999997431 1 0110
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|.++.+.|||||+|+...-.
T Consensus 178 q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 178 QKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCC
Confidence 135889999999999999877543
No 125
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.06 E-value=0.012 Score=58.43 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=58.2
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCC-CCCCcccEEEeccc---cCCCC-------------------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLP-VESFSIDTVLSISS---SHELP------------------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~---~~~~~------------------- 73 (297)
.++.-|+++.+++.++++++... .++.+..+|+..++ +..++||.|++... +..+.
T Consensus 264 ~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~ 343 (431)
T PRK14903 264 KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSE 343 (431)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHH
Confidence 34456888999999988876653 45889999988776 55678999997421 11111
Q ss_pred -hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 -GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|.++++.|||||++++.+-.
T Consensus 344 ~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 344 IQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECC
Confidence 145688999999999999887654
No 126
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.026 Score=50.83 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred ccCceEEEeecCCccC------------hHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411 5 KMQSAVLALSEDKILP------------VSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (297)
Q Consensus 5 ~~~~~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~ 71 (297)
+.|++||=+-.|+-=. ..+..+++.+.|+++.+.. +.||.++++|...-=-+...||.|+...+...
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPE 150 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCC
Confidence 4567888886653222 2244457778888887766 55799999999754224578999999887776
Q ss_pred CChHHHHHHHHhcccCCcEEEEEec
Q 022411 72 LPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
+| ..+.+-|||||++++-..
T Consensus 151 vP-----~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 151 VP-----EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CC-----HHHHHhcccCCEEEEEEc
Confidence 66 346778999999997664
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.04 E-value=0.015 Score=57.41 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=54.7
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCe--EEEEccCCCCCC--CCCcccEEEecc-----c-cCCCC--------------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQI--ITQASSLSQLPV--ESFSIDTVLSIS-----S-SHELP-------------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v--~~~~~d~~~Lp~--~d~sfD~Vls~~-----~-~~~~~-------------- 73 (297)
.+...|.++.|++.++++++.....+ .+..++...+++ +.++||.|++.. . ++..+
T Consensus 264 ~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l 343 (426)
T TIGR00563 264 QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAEL 343 (426)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHH
Confidence 34455778899999888876654333 335666665544 567899999642 1 22111
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|.+++++|||||+|++.+-.
T Consensus 344 ~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 344 AELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 146899999999999999988754
No 128
>PRK04457 spermidine synthase; Provisional
Probab=95.92 E-value=0.018 Score=53.35 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHHHhhh--cCCCeEEEEccCCCC-CCCCCcccEEEeccc-cCC----CChHHHHHHHHhcccCCcEE
Q 022411 20 PVSAVLNAIRDLGDEAVEQ--CDPQIITQASSLSQL-PVESFSIDTVLSISS-SHE----LPGDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~--~~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~-~~~----~~~~~~L~ei~RvLKPGG~l 91 (297)
+..|+.++|++.|++.... ...++.++.+|+... .-...+||+|+.... ... +....+++++.+.|+|||++
T Consensus 94 ~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvl 173 (262)
T PRK04457 94 TAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIF 173 (262)
T ss_pred EEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEE
Confidence 3446668899998876432 246899999987532 222468999997531 111 12378999999999999999
Q ss_pred EEEecC
Q 022411 92 LIYKKL 97 (297)
Q Consensus 92 ~i~~~~ 97 (297)
++..+.
T Consensus 174 vin~~~ 179 (262)
T PRK04457 174 VVNLWS 179 (262)
T ss_pred EEEcCC
Confidence 986554
No 129
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.91 E-value=0.012 Score=53.50 Aligned_cols=83 Identities=11% Similarity=-0.076 Sum_probs=62.6
Q ss_pred cCCccChHHHHHHHHHHHHHHh-------------hhcCCCeEEEEccCCCCCCC---CCcccEEEeccccCCCCh---H
Q 022411 15 EDKILPVSAVLNAIRDLGDEAV-------------EQCDPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPG---D 75 (297)
Q Consensus 15 ~~~~vt~~dlse~m~~~A~~~~-------------~~~~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~~---~ 75 (297)
.|..|+..|+++.-++.+.+.. ......|.++++|+-.++.. -+.||+|+-...++.+++ .
T Consensus 64 ~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~ 143 (226)
T PRK13256 64 KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRT 143 (226)
T ss_pred CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHH
Confidence 4666777788887777764411 01245799999999988642 257999998888888883 6
Q ss_pred HHHHHHHhcccCCcEEEEEecC
Q 022411 76 QLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+.+.++|+|||.+++....
T Consensus 144 ~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 144 NYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred HHHHHHHHHhCCCcEEEEEEEe
Confidence 8899999999999999877653
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.88 E-value=0.019 Score=57.06 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=58.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEecc---c---------cCCCC-----------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSIS---S---------SHELP----------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~---~---------~~~~~----------- 73 (297)
.++..|+++.|++.++++++... .++.++.+|+..++ ++++||+|+.-. . ..|..
T Consensus 277 ~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~ 355 (445)
T PRK14904 277 QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGL 355 (445)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHH
Confidence 35566888999999988776543 46899999998775 567899999631 1 01111
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|.++++.|||||+|++.+-.
T Consensus 356 q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 356 QAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 125899999999999999988754
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.81 E-value=0.02 Score=56.84 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=54.1
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC--CCCCcccEEEeccccC------------CCC----------
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP--VESFSIDTVLSISSSH------------ELP---------- 73 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~~------------~~~---------- 73 (297)
++..|+.+.+++.++++++.. ..++.++.+|+..++ ++ ++||+|++..... |..
T Consensus 278 v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~ 356 (444)
T PRK14902 278 VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQE 356 (444)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHH
Confidence 334566788888888877654 346899999987763 33 7899999754210 100
Q ss_pred -hHHHHHHHHhcccCCcEEEEEec
Q 022411 74 -GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
...++.++.++|||||+|++.+-
T Consensus 357 ~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 357 IQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcC
Confidence 13578999999999999987653
No 132
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.68 E-value=0.061 Score=49.64 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCC---CCcccEEEeccccCCCChHHHHHHHHhcc-cCCcEEEEEec
Q 022411 23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVE---SFSIDTVLSISSSHELPGDQLLEEISRVL-KPGGTILIYKK 96 (297)
Q Consensus 23 dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~~~~~L~ei~RvL-KPGG~l~i~~~ 96 (297)
++.++..+.|+++.+.. ..++.+...|+..-.|+ +..||.|+.-..- +..++..+.++| ||||++.+..+
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~----Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD----PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS----GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCC----HHHHHHHHHHHHhcCCceEEEECC
Confidence 44567778888776553 45799999998654443 3679999886533 456789999999 99999998876
Q ss_pred CCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411 97 LTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (297)
.- .+ .......|...||.+++..+
T Consensus 148 ~i------eQ-v~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 148 CI------EQ-VQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp SH------HH-HHHHHHHHHHTTEEEEEEEE
T ss_pred CH------HH-HHHHHHHHHHCCCeeeEEEE
Confidence 42 21 22445678889999987654
No 133
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.52 E-value=0.066 Score=49.20 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCC-CCC-CCCcccEEEeccccCC------CC-----------------
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQ-LPV-ESFSIDTVLSISSSHE------LP----------------- 73 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~-Lp~-~d~sfD~Vls~~~~~~------~~----------------- 73 (297)
++..|+++.+++.|++++.... +.++.+|+.+ ++- ....||+|+++..+.- ++
T Consensus 113 v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d 190 (251)
T TIGR03704 113 LHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD 190 (251)
T ss_pred EEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc
Confidence 4455778899999988765432 4678888754 221 1357999999864220 00
Q ss_pred ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
...++..+.+.|||||++++..... . ...+...+...||..
T Consensus 191 gl~~~~~i~~~a~~~L~~gG~l~l~~~~~----~----~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 191 GLDVLRRVAAGAPDWLAPGGHLLVETSER----Q----APLAVEAFARAGLIA 235 (251)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECcc----h----HHHHHHHHHHCCCCc
Confidence 1356677779999999999765422 1 125666777788863
No 134
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.52 E-value=0.071 Score=40.70 Aligned_cols=77 Identities=29% Similarity=0.372 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCC-eEEEEccCCC--CCCCC-CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 22 SAVLNAIRDLGDEAVEQCDPQ-IITQASSLSQ--LPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~-v~~~~~d~~~--Lp~~d-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
.+.+..|+..++......... +.+..++... +++.. ..||++......++......+.++.++|+|+|.+++....
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 466666666644332221111 6777777765 78888 5999994444444444678999999999999999988766
Q ss_pred C
Q 022411 98 T 98 (297)
Q Consensus 98 ~ 98 (297)
.
T Consensus 158 ~ 158 (257)
T COG0500 158 R 158 (257)
T ss_pred C
Confidence 4
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.51 E-value=0.059 Score=54.59 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccC--------------CCC----------
Q 022411 20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSH--------------ELP---------- 73 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~--------------~~~---------- 73 (297)
+..|+++.+++.|++++... ..++.++.+|+.. +++..+||+|+++..+. +-|
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dG 244 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDG 244 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccH
Confidence 34467889999999876543 3468888888743 23466899999974211 101
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
...++.++.+.|+|||.+++. .+... .+.+...+...||..+.
T Consensus 245 l~~~~~il~~a~~~L~~gG~l~lE-ig~~q-------~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 245 LQAYFIIAENAKQFLKPNGKIILE-IGFKQ-------EEAVTQIFLDHGYNIES 290 (506)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEE-ECCch-------HHHHHHHHHhcCCCceE
Confidence 134567788999999999874 33211 12455566778997654
No 136
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=95.41 E-value=0.15 Score=45.16 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC-CCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-PVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
++..+-.+++++..++|+++. .+++..+.+++-.. + +-.+||.|+..=. -..+.+|+.+...|||||++++.-.
T Consensus 61 v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 61 VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 334455567777777776554 78899999998644 3 2237999998764 2246889999999999999997654
Q ss_pred CCCCccchHHHHHHHHHHHHHCCcc
Q 022411 97 LTSDKGDVDKAISALEGKLLLAGFL 121 (297)
Q Consensus 97 ~~~~~g~~~~~~~~l~~~L~laGFv 121 (297)
.- + ....+...+...||.
T Consensus 137 tl------E-~~~~a~~~~~~~g~~ 154 (187)
T COG2242 137 TL------E-TLAKALEALEQLGGR 154 (187)
T ss_pred cH------H-HHHHHHHHHHHcCCc
Confidence 32 1 222444567777873
No 137
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.37 E-value=0.012 Score=59.09 Aligned_cols=48 Identities=31% Similarity=0.394 Sum_probs=38.9
Q ss_pred CCCCCCCCCcccEEEeccc-cCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 50 LSQLPVESFSIDTVLSISS-SHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 50 ~~~Lp~~d~sfD~Vls~~~-~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...|||++++||.|.+.-. ..|.. ...+|-|+-|+|+|||+|++..+.
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 4689999999999998654 34555 467889999999999999887654
No 138
>PLN02366 spermidine synthase
Probab=95.36 E-value=0.058 Score=51.30 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred ccCceEEEeecCCccCh--------------HHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCCC--CCCCCcccEE
Q 022411 5 KMQSAVLALSEDKILPV--------------SAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQL--PVESFSIDTV 63 (297)
Q Consensus 5 ~~~~~VLll~~~~~vt~--------------~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~L--p~~d~sfD~V 63 (297)
.+..+||.|-.|...+. .++-+.|++.+++.... .++++.++.+|+... ..+.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34567888866544332 23335678888765422 257899999986422 1235789999
Q ss_pred EeccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411 64 LSISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 64 ls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
++-....+.+ ...+++.+.+.|+|||.+++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9876433322 3578999999999999997653
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.33 E-value=0.079 Score=49.06 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEe
Q 022411 6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLS 65 (297)
Q Consensus 6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls 65 (297)
+..+||.|-.|+.. +..++.++|++.+++.... ..+++.++.+|+.. +.-..+.||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44578888554432 2335556777887765422 14567788777643 2222578999998
Q ss_pred ccccCCCC-----hHHHHHHHHhcccCCcEEEEE
Q 022411 66 ISSSHELP-----GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 66 ~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.......+ ...+++.+.+.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422211 367889999999999999976
No 140
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.32 E-value=0.12 Score=46.51 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=36.7
Q ss_pred CCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 56 ESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 56 ~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+||+|++.+.+|-.+ .+.+++...++|+|||.|+++-+-
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 356999999999888777 478999999999999999999654
No 141
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.097 Score=50.49 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=71.6
Q ss_pred CccChHHHHHHHHHHHHHHhhhcC-CCeEEEEc-cCCCCCCCCCcccEEEeccc------cCCC--C--hHHHHHHHHhc
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQCD-PQIITQAS-SLSQLPVESFSIDTVLSISS------SHEL--P--GDQLLEEISRV 84 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~-d~~~Lp~~d~sfD~Vls~~~------~~~~--~--~~~~L~ei~Rv 84 (297)
..+-..|+-+.|..-|+.|.++-. ....+... |+..+||++++||.|+.-.. ..-. . -..+|..+.++
T Consensus 220 ~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev 299 (347)
T COG1041 220 ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV 299 (347)
T ss_pred ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH
Confidence 333455999999999998887653 44545544 99999999999999998642 1111 1 36789999999
Q ss_pred ccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccch
Q 022411 85 LKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 85 LKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~ 126 (297)
||+||++++..+.. ...++...||..++..
T Consensus 300 Lk~gG~~vf~~p~~------------~~~~~~~~~f~v~~~~ 329 (347)
T COG1041 300 LKPGGRIVFAAPRD------------PRHELEELGFKVLGRF 329 (347)
T ss_pred hhcCcEEEEecCCc------------chhhHhhcCceEEEEE
Confidence 99999999887632 2346788899876654
No 142
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.01 E-value=0.0087 Score=48.49 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=29.3
Q ss_pred cccEEEeccccCCCCh-------HHHHHHHHhcccCCcEEEEE
Q 022411 59 SIDTVLSISSSHELPG-------DQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 59 sfD~Vls~~~~~~~~~-------~~~L~ei~RvLKPGG~l~i~ 94 (297)
.||+|++.++..|++. ..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 3899999998887762 46899999999999999864
No 143
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.92 E-value=0.05 Score=50.85 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCeEEEEccCCCCCCCC---CcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCcc--------chHHH
Q 022411 40 DPQIITQASSLSQLPVES---FSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKG--------DVDKA 107 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d---~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g--------~~~~~ 107 (297)
..++....||+..+..++ ++||+|+..+-+-.-+ .-..+..|.++|||||.++=.-|..-... .+.-+
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs 222 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELS 222 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCC
Confidence 456888899998876555 7999999886333323 45789999999999996653322210001 12234
Q ss_pred HHHHHHHHHHCCcccccch
Q 022411 108 ISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 108 ~~~l~~~L~laGFv~v~~~ 126 (297)
++++.......||..+...
T Consensus 223 ~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 223 LEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 6788888899999986543
No 144
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.90 E-value=0.048 Score=50.93 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCeEEEEccCCCCCCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEe
Q 022411 41 PQIITQASSLSQLPVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 41 ~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..|.|...++..-++..+.||+|+|.+++.++. ...++..++..|+|||.|++-.
T Consensus 184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 357777777765553556799999999999988 3789999999999999999743
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.57 E-value=0.077 Score=47.01 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhh-cCCCeEEEEccCCC-CC--CCCCcccEEEeccccCCC---------ChHHHHHHHHhcccCCcE
Q 022411 24 VLNAIRDLGDEAVEQ-CDPQIITQASSLSQ-LP--VESFSIDTVLSISSSHEL---------PGDQLLEEISRVLKPGGT 90 (297)
Q Consensus 24 lse~m~~~A~~~~~~-~~~~v~~~~~d~~~-Lp--~~d~sfD~Vls~~~~~~~---------~~~~~L~ei~RvLKPGG~ 90 (297)
+....+..+..++.. ...|+.++.+++.. ++ ++++++|.|+.++.--|. -...++.+++++|+|||.
T Consensus 49 ~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 49 IRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGE 128 (195)
T ss_dssp S-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEE
T ss_pred cchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCE
Confidence 333444444444433 46799999998876 32 567999999999852222 137899999999999999
Q ss_pred EEEEecCCCCccchHHHHHHHHHHHHH--CCcccc
Q 022411 91 ILIYKKLTSDKGDVDKAISALEGKLLL--AGFLDA 123 (297)
Q Consensus 91 l~i~~~~~~~~g~~~~~~~~l~~~L~l--aGFv~v 123 (297)
|.+.+-.. .-...+...+.. .+|..+
T Consensus 129 l~~~TD~~-------~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 129 LYFATDVE-------EYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EEEEES-H-------HHHHHHHHHHHHHSTTEEEE
T ss_pred EEEEeCCH-------HHHHHHHHHHHhcCcCeEEc
Confidence 98876431 122244445555 377655
No 146
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.50 E-value=0.082 Score=47.86 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=59.6
Q ss_pred EEEccCCCCCCC---CCcccEEEeccccCCCC-h---HHHHHHHHhcccCCcE-----EEEEecCCCCccchHHHHHHHH
Q 022411 45 TQASSLSQLPVE---SFSIDTVLSISSSHELP-G---DQLLEEISRVLKPGGT-----ILIYKKLTSDKGDVDKAISALE 112 (297)
Q Consensus 45 ~~~~d~~~Lp~~---d~sfD~Vls~~~~~~~~-~---~~~L~ei~RvLKPGG~-----l~i~~~~~~~~g~~~~~~~~l~ 112 (297)
..+.|+-..|+| ++.||+|.+..++.++| + -..+..+++.|+|+|. |+|..+.+--...---..+.+.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~ 166 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLR 166 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHH
Confidence 446677777764 77999999999999998 3 4789999999999999 8888765311000000123677
Q ss_pred HHHHHCCcccccchh
Q 022411 113 GKLLLAGFLDAQRIQ 127 (297)
Q Consensus 113 ~~L~laGFv~v~~~~ 127 (297)
..+..-||.-+....
T Consensus 167 ~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 167 EIMESLGFTRVKYKK 181 (219)
T ss_pred HHHHhCCcEEEEEEe
Confidence 788999999877543
No 147
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=94.42 E-value=0.2 Score=44.59 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=69.5
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCC-eEEEEccCCCCCCCCCcccEEEecc-----ccCC-CC---hHHHHHHHHhcccC
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQ-IITQASSLSQLPVESFSIDTVLSIS-----SSHE-LP---GDQLLEEISRVLKP 87 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~-v~~~~~d~~~Lp~~d~sfD~Vls~~-----~~~~-~~---~~~~L~ei~RvLKP 87 (297)
++..|+++...++|++.++.. ..+ |.|.+.|+..-.+-.+.||+|+--- +++- -+ +...+..+-+.|+|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 556788998889888766543 333 9999999988777788999997421 1221 11 24567889999999
Q ss_pred CcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 88 GGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 88 GG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
||+|+|..=.- +..++...+...||+-...
T Consensus 174 ~gifvItSCN~--------T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 174 GGIFVITSCNF--------TKDELVEEFENFNFEYLST 203 (227)
T ss_pred CcEEEEEecCc--------cHHHHHHHHhcCCeEEEEe
Confidence 99999875321 2236777788788876543
No 148
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.42 E-value=0.15 Score=47.31 Aligned_cols=66 Identities=27% Similarity=0.295 Sum_probs=45.6
Q ss_pred cccEEEeccccCCC-C----hHHHHHHHHhcccCCcEEEEEecCCCCc---cc-----hHHHHHHHHHHHHHCCccccc
Q 022411 59 SIDTVLSISSSHEL-P----GDQLLEEISRVLKPGGTILIYKKLTSDK---GD-----VDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 59 sfD~Vls~~~~~~~-~----~~~~L~ei~RvLKPGG~l~i~~~~~~~~---g~-----~~~~~~~l~~~L~laGFv~v~ 124 (297)
.||+|++.+.+... + -..+++.+.+.|||||.|++......+. |. +.-..+.++..|..+||....
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 59999998854322 1 2689999999999999999887665431 11 111234677889999997544
No 149
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.32 E-value=0.066 Score=45.79 Aligned_cols=75 Identities=5% Similarity=-0.019 Sum_probs=52.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhc--ccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRV--LKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~Rv--LKPGG~l~i~~ 95 (297)
.++..|+.+.|.+.++++... ..++.++.+|+..+++++..||.|+++..++.. ...+..+.+. +.++|.|++..
T Consensus 37 ~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 37 RVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred eEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 344556777888888776543 468999999999999888889999998766542 3444555443 44777777653
No 150
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.26 E-value=0.059 Score=51.60 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=58.6
Q ss_pred EeecCCccC---hHHHHHHHHHHHHHHhhhc---CC----CeEEEEccC------CCCCCCCCcccEEEeccccCCC-C-
Q 022411 12 ALSEDKILP---VSAVLNAIRDLGDEAVEQC---DP----QIITQASSL------SQLPVESFSIDTVLSISSSHEL-P- 73 (297)
Q Consensus 12 ll~~~~~vt---~~dlse~m~~~A~~~~~~~---~~----~v~~~~~d~------~~Lp~~d~sfD~Vls~~~~~~~-~- 73 (297)
+=|+-+... ..|+.+.-+++|+++.... .. .+.|+.+|- ..+++++.+||+|-+-+++|+. .
T Consensus 133 lKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet 212 (389)
T KOG1975|consen 133 LKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET 212 (389)
T ss_pred hHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeecc
Confidence 346655544 5677777777777654332 11 356666643 2346677779999999998863 2
Q ss_pred ---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 ---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|..+.+.|||||.|+-+.+.
T Consensus 213 ee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 213 EESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 367899999999999999955543
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.24 E-value=0.053 Score=49.33 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=54.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCC-C-----CCCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQL-P-----VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 89 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~L-p-----~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG 89 (297)
.++..|..+++.+.|+++.++. ..++.++.+++... + .+..+||+|+.-..-. .....+.++.+.|+|||
T Consensus 95 ~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~--~y~~~~~~~~~ll~~GG 172 (234)
T PLN02781 95 RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP--NYVHFHEQLLKLVKVGG 172 (234)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH--HHHHHHHHHHHhcCCCe
Confidence 4445567778888898877654 35799999988643 2 1246899999864321 12467899999999999
Q ss_pred EEEEEec
Q 022411 90 TILIYKK 96 (297)
Q Consensus 90 ~l~i~~~ 96 (297)
.+++-+.
T Consensus 173 ~ii~dn~ 179 (234)
T PLN02781 173 IIAFDNT 179 (234)
T ss_pred EEEEEcC
Confidence 9887653
No 152
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=0.12 Score=48.90 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=56.1
Q ss_pred CccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCCCCCCCCCcccEEEeccccCCCC--h----HHHHHHHHhcccCCc
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLSQLPVESFSIDTVLSISSSHELP--G----DQLLEEISRVLKPGG 89 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~--~----~~~L~ei~RvLKPGG 89 (297)
..+|+-|+...-++.|+.+++... .+..++.+++.. +..+ +||.|+++-.+|.=. . .+++.+..+.|++||
T Consensus 183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 183 AKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred CeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 345566778888888988775443 333455555432 3344 999999999887422 2 488999999999999
Q ss_pred EEEEEecC
Q 022411 90 TILIYKKL 97 (297)
Q Consensus 90 ~l~i~~~~ 97 (297)
.|+|.-..
T Consensus 261 eL~iVan~ 268 (300)
T COG2813 261 ELWIVANR 268 (300)
T ss_pred EEEEEEcC
Confidence 99888653
No 153
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.96 E-value=0.11 Score=45.29 Aligned_cols=74 Identities=22% Similarity=0.236 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC-CC--------hHHHHHHHHhcccCCc
Q 022411 21 VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP--------GDQLLEEISRVLKPGG 89 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-~~--------~~~~L~ei~RvLKPGG 89 (297)
.-|..+.+++.|++++... ...+.+.+.|+..+|+.++++|+|+++..+-. +. -..+++++.|+|++ .
T Consensus 66 g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~ 144 (179)
T PF01170_consen 66 GSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-R 144 (179)
T ss_dssp EEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-C
T ss_pred ecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-C
Confidence 3456678888888877554 44688999999999988899999999875432 11 14678889999999 4
Q ss_pred EEEEEe
Q 022411 90 TILIYK 95 (297)
Q Consensus 90 ~l~i~~ 95 (297)
.+++..
T Consensus 145 ~v~l~~ 150 (179)
T PF01170_consen 145 AVFLTT 150 (179)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
No 154
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.94 E-value=0.046 Score=50.13 Aligned_cols=115 Identities=15% Similarity=0.088 Sum_probs=75.8
Q ss_pred eEEEeecCCccC------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC-CCC-CCCCcccEEEeccccCCCC-
Q 022411 9 AVLALSEDKILP------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLP-VESFSIDTVLSISSSHELP- 73 (297)
Q Consensus 9 ~VLll~~~~~vt------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~-~Lp-~~d~sfD~Vls~~~~~~~~- 73 (297)
++|-|--|+.++ ..|+|+.|+++|.++- .+.. ..++++. -++ ..+..||+|.+.-++.++-
T Consensus 128 ~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg--~YD~--L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~ 203 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG--LYDT--LYVAEAVLFLEDLTQERFDLIVAADVLPYLGA 203 (287)
T ss_pred eeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc--chHH--HHHHHHHHHhhhccCCcccchhhhhHHHhhcc
Confidence 466666666665 3488999999987642 1110 1122222 112 4578899999998888887
Q ss_pred hHHHHHHHHhcccCCcEEEEEecCCCCcc-----c---hHHHHHHHHHHHHHCCcccccchh
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKLTSDKG-----D---VDKAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~~~~~g-----~---~~~~~~~l~~~L~laGFv~v~~~~ 127 (297)
.+.++.-....|+|||.|.++.-.-...+ + +.|.-+-++..+...||..++...
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 78899999999999999988753322112 1 112334567788999998776543
No 155
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.93 E-value=0.16 Score=45.92 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCccChHHHHHHHHHHHHHH-hh-h-----------cCCCeEEEEccCCCCCCCC-CcccEEEeccccCCCC---hHHHH
Q 022411 16 DKILPVSAVLNAIRDLGDEA-VE-Q-----------CDPQIITQASSLSQLPVES-FSIDTVLSISSSHELP---GDQLL 78 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~-~~-~-----------~~~~v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~---~~~~L 78 (297)
|-.|+..|+++.-++.+.+. .. . ...+|.+.++|+-+++-.. +.||+|+=...++-++ .....
T Consensus 59 G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya 138 (218)
T PF05724_consen 59 GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYA 138 (218)
T ss_dssp TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHH
Confidence 44556668888777776432 11 0 1236789999998886444 3799999887777777 37889
Q ss_pred HHHHhcccCCcEE--EEEecCCCC-ccchHHH-HHHHHHHHHHCCccc
Q 022411 79 EEISRVLKPGGTI--LIYKKLTSD-KGDVDKA-ISALEGKLLLAGFLD 122 (297)
Q Consensus 79 ~ei~RvLKPGG~l--~i~~~~~~~-~g~~~~~-~~~l~~~L~laGFv~ 122 (297)
+.+.++|+|||++ +..+..... .|++-.. .+++. .+.-.+|..
T Consensus 139 ~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~-~l~~~~f~i 185 (218)
T PF05724_consen 139 QQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVR-ELFGPGFEI 185 (218)
T ss_dssp HHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHH-HHHTTTEEE
T ss_pred HHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHH-HHhcCCcEE
Confidence 9999999999994 333333222 2443222 23444 344477754
No 156
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.74 E-value=0.34 Score=43.51 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCCeEEEEccCCCCCCCCCcccEEEeccccCC-----CC---hHHHHHHHHhcccCCcEEEEEecCCCC-ccchHH----
Q 022411 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHE-----LP---GDQLLEEISRVLKPGGTILIYKKLTSD-KGDVDK---- 106 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-----~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~-~g~~~~---- 106 (297)
..|++.+-..+..++ +.+..|++......|- ++ ...+..++++.|||||.+.+.++.... .+..+.
T Consensus 104 ~aN~e~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ 182 (238)
T COG4798 104 YANVEVIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLH 182 (238)
T ss_pred hhhhhhhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhc
Confidence 334444444555555 4455666655432221 22 478999999999999999999986321 111111
Q ss_pred --HHHHHHHHHHHCCccccc
Q 022411 107 --AISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 107 --~~~~l~~~L~laGFv~v~ 124 (297)
....+..+...+||.-..
T Consensus 183 ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 183 RIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccChHHHHHHHHhhcceeee
Confidence 123567788999998544
No 157
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.70 E-value=0.62 Score=42.48 Aligned_cols=124 Identities=22% Similarity=0.225 Sum_probs=73.3
Q ss_pred ccccCceEEEeecCCccC---hHHHHH----------------HHHHHHHHHhhhcCCCeEEEEccCCCC---CCCCCcc
Q 022411 3 TGKMQSAVLALSEDKILP---VSAVLN----------------AIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSI 60 (297)
Q Consensus 3 ~~~~~~~VLll~~~~~vt---~~dlse----------------~m~~~A~~~~~~~~~~v~~~~~d~~~L---p~~d~sf 60 (297)
.++.|.+||+|--.+.+| +.|++. .+++.| +.-+||..+.+|+..- ..--+.+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-----~~R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-----KKRPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-----HHSTTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-----ccCCceeeeeccCCChHHhhcccccc
Confidence 356788999996544444 555544 333333 3346888888888632 1113378
Q ss_pred cEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhccccC
Q 022411 61 DTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSVV 132 (297)
Q Consensus 61 D~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~~ 132 (297)
|+|++-.+ +.-..+.++.....-||+||.+++..-..+ ...++...+.+-...|...||...+..+..|..
T Consensus 145 DvI~~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~ 217 (229)
T PF01269_consen 145 DVIFQDVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYE 217 (229)
T ss_dssp EEEEEE-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTS
T ss_pred cEEEecCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCC
Confidence 99998754 211146677788889999999988753211 112344455566677888899988777666653
No 158
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=93.70 E-value=0.06 Score=47.87 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred ccccCceEEEeecCCccChHHHHHHHH------HHHHHHhhhc-CCCeEEEEccCC-CC-CCCCCcccEEEeccccCCCC
Q 022411 3 TGKMQSAVLALSEDKILPVSAVLNAIR------DLGDEAVEQC-DPQIITQASSLS-QL-PVESFSIDTVLSISSSHELP 73 (297)
Q Consensus 3 ~~~~~~~VLll~~~~~vt~~dlse~m~------~~A~~~~~~~-~~~v~~~~~d~~-~L-p~~d~sfD~Vls~~~~~~~~ 73 (297)
.++.|.+||-|-=|...-..-+.++.. ++...++.++ ...+.++++|++ .| .|++.+||.|+.+.+++++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 466788888885553332222222110 0111112221 345778888886 45 48999999999999998887
Q ss_pred -hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 -GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+..+|.|+.|+ |...+|.-++
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecC
Confidence 89999999888 4455655543
No 159
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.28 E-value=0.098 Score=48.32 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCCCCcccEEEeccccCCCC-------hHHHHHHHHhcccCCcEEEEE
Q 022411 54 PVESFSIDTVLSISSSHELP-------GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 54 p~~d~sfD~Vls~~~~~~~~-------~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.+....||+|++.....|++ ...+++.|++.|.|||+|++.
T Consensus 161 ~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 161 DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 34577899999988766655 268999999999999999853
No 160
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.21 E-value=0.28 Score=46.52 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=43.7
Q ss_pred CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (297)
..||+|+++-.-. +...+..++.+.|||||+++++-.. ..-.+.+...+..+||..+....
T Consensus 228 ~~~DvIVANILA~--vl~~La~~~~~~lkpgg~lIlSGIl-------~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 228 GPFDVIVANILAE--VLVELAPDIKRLLKPGGRLILSGIL-------EDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred CcccEEEehhhHH--HHHHHHHHHHHHcCCCceEEEEeeh-------HhHHHHHHHHHHhCCCeEeEEEe
Confidence 5999999985211 1357889999999999999987533 22233566677789999766543
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.92 E-value=0.12 Score=46.96 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEE-ccCC-CCC-CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcE
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQA-SSLS-QLP-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGT 90 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~-~d~~-~Lp-~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~ 90 (297)
++.++-.+.-+++.+.|+++.++. ...|+.+. ++.. .+. +..++||+||.-..-.. -...+..+.+.|+|||.
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~~--yp~~le~~~~lLr~GGl 161 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKAD--YPEYLERALPLLRPGGL 161 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChhh--CHHHHHHHHHHhCCCcE
Confidence 344556678889999999887654 34477777 3543 222 45789999998653222 25789999999999999
Q ss_pred EEEEecCC
Q 022411 91 ILIYKKLT 98 (297)
Q Consensus 91 l~i~~~~~ 98 (297)
+++-+...
T Consensus 162 iv~DNvl~ 169 (219)
T COG4122 162 IVADNVLF 169 (219)
T ss_pred EEEeeccc
Confidence 99887553
No 162
>PLN02672 methionine S-methyltransferase
Probab=92.91 E-value=0.41 Score=52.74 Aligned_cols=104 Identities=14% Similarity=0.035 Sum_probs=69.8
Q ss_pred CccChHHHHHHHHHHHHHHhhhc-----------------CCCeEEEEccCCCCCCCC--CcccEEEecccc--------
Q 022411 17 KILPVSAVLNAIRDLGDEAVEQC-----------------DPQIITQASSLSQLPVES--FSIDTVLSISSS-------- 69 (297)
Q Consensus 17 ~~vt~~dlse~m~~~A~~~~~~~-----------------~~~v~~~~~d~~~Lp~~d--~sfD~Vls~~~~-------- 69 (297)
..++..|+++.+++.|++|+... ..++.++.+|+.... .+ ..||+|+++-.+
T Consensus 143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~ 221 (1082)
T PLN02672 143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEA 221 (1082)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhh
Confidence 34556688899999998877542 136899999986543 22 269999998531
Q ss_pred -------C-----------CCC--h-----------HHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHH-HHHHH
Q 022411 70 -------H-----------ELP--G-----------DQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALE-GKLLL 117 (297)
Q Consensus 70 -------~-----------~~~--~-----------~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~-~~L~l 117 (297)
+ +.. . ..++.+..+.|+|||.+++..... .. +.+. +.+..
T Consensus 222 l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~-----q~---~~v~~~l~~~ 293 (1082)
T PLN02672 222 MSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR-----PG---QAVCERLFER 293 (1082)
T ss_pred cChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----HH---HHHHHHHHHH
Confidence 0 011 0 467788888999999988654321 11 1455 46778
Q ss_pred CCcccccchhcc
Q 022411 118 AGFLDAQRIQLK 129 (297)
Q Consensus 118 aGFv~v~~~~~k 129 (297)
.||..+..+..+
T Consensus 294 ~gf~~~~~~~~~ 305 (1082)
T PLN02672 294 RGFRITKLWQTK 305 (1082)
T ss_pred CCCCeeEEeeeh
Confidence 999988776654
No 163
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.50 E-value=0.21 Score=45.46 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEccCCCC--CCCCCcccEEEecccc-CCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQL--PVESFSIDTVLSISSS-HELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~-~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+++...|++.+=. ...+|..+.+..+.. .++|.+||-|+.-.-. ++-....+.+.+.|+|||+|++.+.+..
T Consensus 134 p~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 134 PDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred HHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 4666677665421 224566666644322 2569999999986532 2223567889999999999999877644
No 164
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.40 E-value=0.27 Score=49.27 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC-----------hHHHHHHHHhcccCCcE
Q 022411 22 SAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELP-----------GDQLLEEISRVLKPGGT 90 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~-----------~~~~L~ei~RvLKPGG~ 90 (297)
.|.+....+....+.....+.+.+...++..+.|++++||+|+---.++.+. ....+.+++|+|+|||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 3444444444333333556778999999999999999999999765433221 24567899999999999
Q ss_pred EEEEec
Q 022411 91 ILIYKK 96 (297)
Q Consensus 91 l~i~~~ 96 (297)
++....
T Consensus 157 ~~svtl 162 (482)
T KOG2352|consen 157 YISVTL 162 (482)
T ss_pred EEEEEe
Confidence 977665
No 165
>PRK13699 putative methylase; Provisional
Probab=92.39 E-value=0.27 Score=44.64 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=43.7
Q ss_pred EEEccCCCC--CCCCCcccEEEeccccC----C-----C------C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHH
Q 022411 45 TQASSLSQL--PVESFSIDTVLSISSSH----E-----L------P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDK 106 (297)
Q Consensus 45 ~~~~d~~~L--p~~d~sfD~Vls~~~~~----~-----~------~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~ 106 (297)
+..+|...+ .++++++|+|+.--.+. . + . ....+.|++|+|||||.+++..... ..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~----~~-- 77 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN----RV-- 77 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc----cH--
Confidence 334444332 46688888888763221 0 0 1 2478899999999999998643211 01
Q ss_pred HHHHHHHHHHHCCccccc
Q 022411 107 AISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 107 ~~~~l~~~L~laGFv~v~ 124 (297)
..+...+..+||.-.+
T Consensus 78 --~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 78 --DRFMAAWKNAGFSVVG 93 (227)
T ss_pred --HHHHHHHHHCCCEEee
Confidence 1344567788998543
No 166
>PRK00536 speE spermidine synthase; Provisional
Probab=92.30 E-value=0.37 Score=44.86 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=52.0
Q ss_pred HHHHHHHHHHh-----hhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCC
Q 022411 26 NAIRDLGDEAV-----EQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSD 100 (297)
Q Consensus 26 e~m~~~A~~~~-----~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~ 100 (297)
+++++.+++-. .-.++++..+.. +.+ ...++||+|+.-.. ++...++.+.|+|+|||.++.+.....
T Consensus 104 ~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~- 175 (262)
T PRK00536 104 EKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLKEDGVFISVAKHPL- 175 (262)
T ss_pred HHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcCCCcEEEECCCCcc-
Confidence 34555555411 223778887752 211 12468999998742 346788999999999999997643221
Q ss_pred ccchHHHHHHHHHHHHHCCccccc
Q 022411 101 KGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 101 ~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
-. ......+.+.+.. .|..+.
T Consensus 176 -~~-~~~~~~i~~~l~~-~F~~v~ 196 (262)
T PRK00536 176 -LE-HVSMQNALKNMGD-FFSIAM 196 (262)
T ss_pred -cC-HHHHHHHHHHHHh-hCCceE
Confidence 01 1223345555554 676544
No 167
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.54 Score=42.64 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHhhhc-----------CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411 21 VSAVLNAIRDLGDEAVEQC-----------DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 89 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-----------~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG 89 (297)
..+..+++.+.+.+++.+. ..++.++.+|....--+.+.||.|++..... ...+++...|+|||
T Consensus 113 GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~-----~~pq~l~dqL~~gG 187 (237)
T KOG1661|consen 113 GIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAAS-----ELPQELLDQLKPGG 187 (237)
T ss_pred chhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCcc-----ccHHHHHHhhccCC
Confidence 3455556666665554321 3568888999988877888999999986544 45578899999999
Q ss_pred EEEEEec
Q 022411 90 TILIYKK 96 (297)
Q Consensus 90 ~l~i~~~ 96 (297)
+++|-..
T Consensus 188 rllip~~ 194 (237)
T KOG1661|consen 188 RLLIPVG 194 (237)
T ss_pred eEEEeec
Confidence 9997543
No 168
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=91.83 E-value=0.15 Score=48.34 Aligned_cols=108 Identities=18% Similarity=0.121 Sum_probs=63.1
Q ss_pred cccCceEEEeecCCccC-------------hHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc
Q 022411 4 GKMQSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS 68 (297)
Q Consensus 4 ~~~~~~VLll~~~~~vt-------------~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~ 68 (297)
.+.|.+||-+-.|+.+- ..|+-+...+.|+++++.. ..++.+ .... .+....||+|+++-.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~--~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSE--DLVEGKFDLVVANIL 234 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTS--CTCCS-EEEEEEES-
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEec--ccccccCCEEEECCC
Confidence 34567888887666543 2234445566666665432 223333 2222 233589999999853
Q ss_pred cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 69 SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 69 ~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
..- ...++..+.+.|+|||+|+++-... .....+...+. .||..++.
T Consensus 235 ~~v--L~~l~~~~~~~l~~~G~lIlSGIl~-------~~~~~v~~a~~-~g~~~~~~ 281 (295)
T PF06325_consen 235 ADV--LLELAPDIASLLKPGGYLILSGILE-------EQEDEVIEAYK-QGFELVEE 281 (295)
T ss_dssp HHH--HHHHHHHCHHHEEEEEEEEEEEEEG-------GGHHHHHHHHH-TTEEEEEE
T ss_pred HHH--HHHHHHHHHHhhCCCCEEEEccccH-------HHHHHHHHHHH-CCCEEEEE
Confidence 221 3467888999999999999875432 12235555665 49986543
No 169
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.78 E-value=0.22 Score=49.45 Aligned_cols=95 Identities=14% Similarity=0.145 Sum_probs=62.2
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC----CCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ----LPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~----Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i 93 (297)
+...|.++.|++.|++++... ..++.++.+|+.. +++.+++||+|++....... ...+..+.+ |+|++.+++
T Consensus 322 V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~--~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 322 VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA--AEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh--HHHHHHHHh-cCCCeEEEE
Confidence 335588899999999876543 3479999999864 34556789999987643332 345655555 799999988
Q ss_pred EecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 94 YKKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
.-.. .+..+++ ..|..+||.-..
T Consensus 399 SCnp-------~tlaRDl-~~L~~~gY~l~~ 421 (443)
T PRK13168 399 SCNP-------ATLARDA-GVLVEAGYRLKR 421 (443)
T ss_pred EeCh-------HHhhccH-HHHhhCCcEEEE
Confidence 7532 1111122 345568887544
No 170
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.65 E-value=0.48 Score=49.93 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=63.6
Q ss_pred cChHHHHHHHHHHHHHHhhhc--C-CCeEEEEccCCCC-CCCCCcccEEEeccccCC--------C---C-hHHHHHHHH
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQL-PVESFSIDTVLSISSSHE--------L---P-GDQLLEEIS 82 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~-~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~~--------~---~-~~~~L~ei~ 82 (297)
|+..|+++.+++.|+++++.. . .++.++.+|+... .-....||+|++.....- + . ...++..+.
T Consensus 564 V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~ 643 (702)
T PRK11783 564 TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAK 643 (702)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHH
Confidence 567789999999999887543 2 3689999987542 111468999999753211 0 0 246788889
Q ss_pred hcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCccc
Q 022411 83 RVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 83 RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
++|+|||.|++...... +. .....+..+||.-
T Consensus 644 ~lL~~gG~l~~~~~~~~----~~----~~~~~~~~~g~~~ 675 (702)
T PRK11783 644 RLLRPGGTLYFSNNKRG----FK----MDEEGLAKLGLKA 675 (702)
T ss_pred HHcCCCCEEEEEeCCcc----CC----hhHHHHHhCCCeE
Confidence 99999999987653321 11 1244566678764
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=91.59 E-value=0.4 Score=43.69 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=47.5
Q ss_pred HHHHHHhhhcCC-CeEEEEccCCCC---CCCCCcccEEEeccccCCCC---------hHHHHHHHHhcccCCcEEEEEec
Q 022411 30 DLGDEAVEQCDP-QIITQASSLSQL---PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 30 ~~A~~~~~~~~~-~v~~~~~d~~~L---p~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
..+..++..... |+..+..|+..+ =+++++.|-|+.++.--|.. ...+++.+.++|||||.|.+.+-
T Consensus 86 ~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 86 AKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 333333444444 899998887644 23556999999998633321 37899999999999999998764
No 172
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=91.50 E-value=0.38 Score=46.21 Aligned_cols=76 Identities=20% Similarity=0.112 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhh-------c----CCCeEEEEccCCCC----CCCC--CcccEEEeccccCCC-C----hHHHHH
Q 022411 22 SAVLNAIRDLGDEAVEQ-------C----DPQIITQASSLSQL----PVES--FSIDTVLSISSSHEL-P----GDQLLE 79 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~-------~----~~~v~~~~~d~~~L----p~~d--~sfD~Vls~~~~~~~-~----~~~~L~ 79 (297)
.|++.+-++.|+++..+ . .-...++.+|.-.- -+.+ ..||+|-+.+++|+. . ...+|.
T Consensus 91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~ 170 (331)
T PF03291_consen 91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLK 170 (331)
T ss_dssp EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHH
Confidence 45566555666555411 1 12456677755322 1333 599999999999974 3 267899
Q ss_pred HHHhcccCCcEEEEEecC
Q 022411 80 EISRVLKPGGTILIYKKL 97 (297)
Q Consensus 80 ei~RvLKPGG~l~i~~~~ 97 (297)
.+.+.|||||+|+...+.
T Consensus 171 Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 171 NVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHTEEEEEEEEEEEE-
T ss_pred HHHHhcCCCCEEEEEecC
Confidence 999999999999988764
No 173
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=91.46 E-value=0.25 Score=46.01 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411 57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
+..||+|.+.+.+-... |..+|++|++.|+|+|++++..
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 46799999998876555 8899999999999999998874
No 174
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.04 E-value=0.24 Score=43.10 Aligned_cols=70 Identities=21% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCcccEEEeccccCCCC------------hHHHHHHHHhcccCCcEEEEEecCCCCc--cchHHHHHHHHHHHHHCCccc
Q 022411 57 SFSIDTVLSISSSHELP------------GDQLLEEISRVLKPGGTILIYKKLTSDK--GDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~------------~~~~L~ei~RvLKPGG~l~i~~~~~~~~--g~~~~~~~~l~~~L~laGFv~ 122 (297)
.++||.+.+..++.|+- ....+.++.++|||||.|++..+..... .+.-.....++-.+++.||.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 46799988877654331 2578899999999999999998763210 001122345566789999997
Q ss_pred ccch
Q 022411 123 AQRI 126 (297)
Q Consensus 123 v~~~ 126 (297)
+...
T Consensus 141 i~tf 144 (177)
T PF03269_consen 141 IDTF 144 (177)
T ss_pred Eeee
Confidence 7654
No 175
>PLN02823 spermine synthase
Probab=90.71 E-value=0.31 Score=46.98 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=58.0
Q ss_pred ceEEEeecCCccC--------------hHHHHHHHHHHHHHHhhh-----cCCCeEEEEccCCC-CCCCCCcccEEEecc
Q 022411 8 SAVLALSEDKILP--------------VSAVLNAIRDLGDEAVEQ-----CDPQIITQASSLSQ-LPVESFSIDTVLSIS 67 (297)
Q Consensus 8 ~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~~~-----~~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~ 67 (297)
.+||++-.|...+ ..++-+++++.+++.... .++++.++.+|+.. +.-..+.||+|+.-.
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~ 184 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL 184 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence 4677775554332 335556788888764321 25789999988754 344467899999864
Q ss_pred ccC-------CCChHHHHH-HHHhcccCCcEEEEE
Q 022411 68 SSH-------ELPGDQLLE-EISRVLKPGGTILIY 94 (297)
Q Consensus 68 ~~~-------~~~~~~~L~-ei~RvLKPGG~l~i~ 94 (297)
.-. .+....+++ .+.+.|+|||.+++.
T Consensus 185 ~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 185 ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 211 122467887 899999999998765
No 176
>PRK11524 putative methyltransferase; Provisional
Probab=90.66 E-value=0.23 Score=46.39 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=36.7
Q ss_pred eEEEEccCCCC--CCCCCcccEEEeccccCC----------------CC-hHHHHHHHHhcccCCcEEEEEe
Q 022411 43 IITQASSLSQL--PVESFSIDTVLSISSSHE----------------LP-GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 43 v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~----------------~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..+.++|...+ .+++++||+|++.-.+.. .. ....+.++.|+|||||.+++..
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34566666543 466889999998643210 01 2468899999999999999863
No 177
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=90.24 E-value=4 Score=37.39 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred cCceEEEeecCCcc--------------ChHHHHHHHHHHHHHHhh-----hcCCCeEEEEccCCCC-CCCCC-cccEEE
Q 022411 6 MQSAVLALSEDKIL--------------PVSAVLNAIRDLGDEAVE-----QCDPQIITQASSLSQL-PVESF-SIDTVL 64 (297)
Q Consensus 6 ~~~~VLll~~~~~v--------------t~~dlse~m~~~A~~~~~-----~~~~~v~~~~~d~~~L-p~~d~-sfD~Vl 64 (297)
+..+||+|-.|... +.-++-+.+++.+++-.. ..++++..+.+|+... --... .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 34578887654433 333556677777776321 2367899999988432 11233 899999
Q ss_pred eccccCC-----CChHHHHHHHHhcccCCcEEEEEec
Q 022411 65 SISSSHE-----LPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 65 s~~~~~~-----~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
.-..-.. +-...+++.+.+.|+|||.+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 8543211 2247899999999999999998763
No 178
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=89.85 E-value=1.1 Score=44.11 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=53.6
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--C-CCeEEEEccCCCCC--C--CCCcccEEEeccccCCCC----------hHHHHHH
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--D-PQIITQASSLSQLP--V--ESFSIDTVLSISSSHELP----------GDQLLEE 80 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~-~~v~~~~~d~~~Lp--~--~d~sfD~Vls~~~~~~~~----------~~~~L~e 80 (297)
.|+..|+++.+++.|+++++.. . .++.++.+|+...- + ...+||+|++......-. -..++..
T Consensus 245 ~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~ 324 (396)
T PRK15128 245 QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINML 324 (396)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHH
Confidence 3455688889999999887543 2 36899999986531 1 245899999985432111 1234456
Q ss_pred HHhcccCCcEEEEEe
Q 022411 81 ISRVLKPGGTILIYK 95 (297)
Q Consensus 81 i~RvLKPGG~l~i~~ 95 (297)
..++|+|||.|+...
T Consensus 325 a~~lLk~gG~lv~~s 339 (396)
T PRK15128 325 AIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHcCCCeEEEEEe
Confidence 789999999998754
No 179
>PHA03412 putative methyltransferase; Provisional
Probab=89.51 E-value=0.59 Score=43.02 Aligned_cols=68 Identities=13% Similarity=0.147 Sum_probs=46.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCC------------C-hHHHHHHHHhc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHEL------------P-GDQLLEEISRV 84 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~------------~-~~~~L~ei~Rv 84 (297)
.++..|+.+.+.++|+++. .++.++.+|+...++ +.+||+|+++-.++.. . ...++....|+
T Consensus 78 ~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L 152 (241)
T PHA03412 78 EIVCVELNHTYYKLGKRIV----PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI 152 (241)
T ss_pred EEEEEECCHHHHHHHHhhc----cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH
Confidence 4555567777888887653 357888999987665 5689999999654311 1 24578888886
Q ss_pred ccCCcE
Q 022411 85 LKPGGT 90 (297)
Q Consensus 85 LKPGG~ 90 (297)
|+||+.
T Consensus 153 l~~G~~ 158 (241)
T PHA03412 153 ARQGTF 158 (241)
T ss_pred cCCCEE
Confidence 666664
No 180
>PLN02476 O-methyltransferase
Probab=88.98 E-value=0.4 Score=45.04 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-C----CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEE
Q 022411 20 PVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTI 91 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l 91 (297)
+..+..+++.++|+++.++. ..+|.++.+++.. |+ + ..++||+|+.-..-.. -...+..+.+.|+|||.+
T Consensus 147 ~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~--Y~~y~e~~l~lL~~GGvI 224 (278)
T PLN02476 147 VACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRM--YQDYFELLLQLVRVGGVI 224 (278)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHH--HHHHHHHHHHhcCCCcEE
Confidence 33455667888888876554 3479999998753 32 1 1368999998764211 256788899999999999
Q ss_pred EEEec
Q 022411 92 LIYKK 96 (297)
Q Consensus 92 ~i~~~ 96 (297)
++-+.
T Consensus 225 V~DNv 229 (278)
T PLN02476 225 VMDNV 229 (278)
T ss_pred EEecC
Confidence 87654
No 181
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.91 E-value=0.37 Score=48.60 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCCCCCCCcccEEEeccccCC----CChHHHHHHHHhcccCCcEEEEEecC
Q 022411 51 SQLPVESFSIDTVLSISSSHE----LPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 51 ~~Lp~~d~sfD~Vls~~~~~~----~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+.++.-+.+||+|.+...+.. +....++-|+-|+|+|||.++|.+..
T Consensus 419 E~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 419 EAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 344555689999998754332 33578899999999999999998753
No 182
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=88.12 E-value=1.5 Score=43.16 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=57.6
Q ss_pred CceEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC----CCCCCcccEEEecccc
Q 022411 7 QSAVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL----PVESFSIDTVLSISSS 69 (297)
Q Consensus 7 ~~~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L----p~~d~sfD~Vls~~~~ 69 (297)
+.+||-+-.|+. |...|.++.|++.|++++... ..+++++.+|+..+ ++.+.+||+|+....-
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 456666655433 335578889999998876543 45799999998642 3445689999976542
Q ss_pred CCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 70 HELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 70 ~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..+ ...++..+.+ |+|++.+++.-
T Consensus 373 ~G~-~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 373 KGC-AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence 222 2456666554 89998887753
No 183
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=88.10 E-value=0.31 Score=40.24 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=45.9
Q ss_pred CeEEEEccCCC-CCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH
Q 022411 42 QIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL 116 (297)
Q Consensus 42 ~v~~~~~d~~~-Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~ 116 (297)
.+....+|+.. ++--...||+|+.- ++-..-| ...++++|+|+++|||++.-+... ..+++.|.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a-----------~~Vr~~L~ 100 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSA-----------GAVRRALQ 100 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--B-----------HHHHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeech-----------HHHHHHHH
Confidence 45566788753 34224789999975 3222222 478999999999999999743321 26888999
Q ss_pred HCCcccc
Q 022411 117 LAGFLDA 123 (297)
Q Consensus 117 laGFv~v 123 (297)
.+||...
T Consensus 101 ~aGF~v~ 107 (124)
T PF05430_consen 101 QAGFEVE 107 (124)
T ss_dssp HCTEEEE
T ss_pred HcCCEEE
Confidence 9999854
No 184
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=87.59 E-value=1 Score=40.04 Aligned_cols=76 Identities=7% Similarity=-0.045 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhhc-CCCeEEEEccCCC-CCCCCCcccEEEeccccCCCChHHHHHHHHh--cccCCcEEEEEecC
Q 022411 22 SAVLNAIRDLGDEAVEQC-DPQIITQASSLSQ-LPVESFSIDTVLSISSSHELPGDQLLEEISR--VLKPGGTILIYKKL 97 (297)
Q Consensus 22 ~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~-Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~R--vLKPGG~l~i~~~~ 97 (297)
.+..+...+.++++++.. ..++.++.+|+.. ++.....||+|++.-.++.-....++..+.. .|+|+|.+++....
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 345566777777766544 2468899998864 3323457999999987543223455665555 37999988876543
No 185
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.29 E-value=4.5 Score=37.29 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=59.8
Q ss_pred CceEEEeecCCccC-------------hHHHHHHHHHHHHHHhhhcCCCeEEEEccCC-CCCCC-CCcccEEEeccccCC
Q 022411 7 QSAVLALSEDKILP-------------VSAVLNAIRDLGDEAVEQCDPQIITQASSLS-QLPVE-SFSIDTVLSISSSHE 71 (297)
Q Consensus 7 ~~~VLll~~~~~vt-------------~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~-~Lp~~-d~sfD~Vls~~~~~~ 71 (297)
|.+||.|-++-.++ +-|+=+.+++..++.+++....|.....|+. .||-. .+.||+++.--...-
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP 124 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SSH
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCCH
Confidence 45677776644433 4466677788777666666556888888886 34411 368999998753221
Q ss_pred CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
--...+++.-...||.-|...+.-.... ......|..+++.+...||+....
T Consensus 125 ~G~~LFlsRgi~~Lk~~g~~gy~~~~~~--~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 125 EGLKLFLSRGIEALKGEGCAGYFGFTHK--EASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHHHHHHHTB-STT-EEEEEE-TT--T--HHHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEecC--cCcHHHHHHHHHHHHHCCcCHHHH
Confidence 1146788888889998774433322221 112334668899999999986543
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=86.92 E-value=0.45 Score=43.92 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=51.1
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-CC-----CCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-VE-----SFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 89 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~~-----d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG 89 (297)
++-.+..++..+.|++..++. ..+|+++.+++.. |+ +. .++||+|+.-..-.. -...+..+.+.|+|||
T Consensus 107 v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~--Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 107 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDN--YINYHKRLIDLVKVGG 184 (247)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHH--hHHHHHHHHHhcCCCe
Confidence 333344467778888776554 4689999998753 23 11 268999998754221 2456778889999999
Q ss_pred EEEEEec
Q 022411 90 TILIYKK 96 (297)
Q Consensus 90 ~l~i~~~ 96 (297)
.+++-+.
T Consensus 185 viv~DNv 191 (247)
T PLN02589 185 VIGYDNT 191 (247)
T ss_pred EEEEcCC
Confidence 9886543
No 187
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=86.80 E-value=1.6 Score=43.04 Aligned_cols=113 Identities=16% Similarity=0.104 Sum_probs=72.1
Q ss_pred CceEEEeec------------CC-ccChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCC-CCCC---CCcccEEEec
Q 022411 7 QSAVLALSE------------DK-ILPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQ-LPVE---SFSIDTVLSI 66 (297)
Q Consensus 7 ~~~VLll~~------------~~-~vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~-Lp~~---d~sfD~Vls~ 66 (297)
|.+||=|.. |+ .||--|++..-+++|+++.+-. ...+.|+++|+-. |... ...||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 667776643 55 6778899999999999876432 3457899988743 2222 3489999985
Q ss_pred cc------cCCCC----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411 67 SS------SHELP----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (297)
Q Consensus 67 ~~------~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (297)
-. -..+. -..++....++|+|||.+++...... -....-...+.+.+..+|..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~--~~~~~f~~~i~~a~~~~~~~ 360 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH--FSSDLFLEIIARAAAAAGRR 360 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc--cCHHHHHHHHHHHHHhcCCc
Confidence 42 11122 25788899999999999998765432 11222222444555555443
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=86.36 E-value=1.7 Score=44.14 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=43.2
Q ss_pred CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC---------hHHHHHHHHhcccCCcEEEEEec
Q 022411 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP---------GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 40 ~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~---------~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
..|+.++.+++..+ -|+++++|.|+.++.--|.. ...++.+++++|||||.+.+.+-
T Consensus 396 l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 396 ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 45777777776433 27789999999998633321 37899999999999999998754
No 189
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.21 E-value=9.1 Score=34.70 Aligned_cols=123 Identities=21% Similarity=0.224 Sum_probs=72.9
Q ss_pred ccccCceEEEeec--CCccC-hHHHHH---------------HHHHHHHHHhhhcCCCeEEEEccCCCC---CCCCCccc
Q 022411 3 TGKMQSAVLALSE--DKILP-VSAVLN---------------AIRDLGDEAVEQCDPQIITQASSLSQL---PVESFSID 61 (297)
Q Consensus 3 ~~~~~~~VLll~~--~~~vt-~~dlse---------------~m~~~A~~~~~~~~~~v~~~~~d~~~L---p~~d~sfD 61 (297)
.++.|.+||+|-- ||+++ +.|++. +++..+.+ -.|+.-+.+|+..- .+--+.+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhccccc
Confidence 3577899999954 55554 443332 33333332 35777777777531 11123478
Q ss_pred EEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCC--CccchHHHHHHHHHHHHHCCcccccchhcccc
Q 022411 62 TVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTS--DKGDVDKAISALEGKLLLAGFLDAQRIQLKSV 131 (297)
Q Consensus 62 ~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~--~~g~~~~~~~~l~~~L~laGFv~v~~~~~kp~ 131 (297)
+|+.--+.. -..+-+......-||+||.+++..-..+ .-.++...+......|...||...+.....|.
T Consensus 148 viy~DVAQp-~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePy 218 (231)
T COG1889 148 VIYQDVAQP-NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPY 218 (231)
T ss_pred EEEEecCCc-hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCc
Confidence 877654211 1135677788899999998876643211 11344455555667788899987776665554
No 190
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=85.74 E-value=0.35 Score=43.27 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=52.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-C----CCCcccEEEeccccCCCChHHHHHHHHhcccCCc
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V----ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGG 89 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~----~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG 89 (297)
.++..+..+++.+.|++..+.. ..+|+++.+++.. |+ + +.+.||+|+.-..-.. -...+..+.+.|+|||
T Consensus 72 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~--y~~y~~~~~~ll~~gg 149 (205)
T PF01596_consen 72 KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRN--YLEYFEKALPLLRPGG 149 (205)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGG--HHHHHHHHHHHEEEEE
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccc--hhhHHHHHhhhccCCe
Confidence 3444455667788888766543 3579999998753 22 1 1357999998764221 2457888899999999
Q ss_pred EEEEEecC
Q 022411 90 TILIYKKL 97 (297)
Q Consensus 90 ~l~i~~~~ 97 (297)
.+++-+..
T Consensus 150 vii~DN~l 157 (205)
T PF01596_consen 150 VIIADNVL 157 (205)
T ss_dssp EEEEETTT
T ss_pred EEEEcccc
Confidence 99987643
No 191
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=85.29 E-value=3.8 Score=38.36 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=62.9
Q ss_pred ccChHHHHHHHHHHHHHHhhhcC-CCeEEEEccCC-CCCCCCCcccEEEeccccC--C-----------CC---------
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCD-PQIITQASSLS-QLPVESFSIDTVLSISSSH--E-----------LP--------- 73 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~-~~v~~~~~d~~-~Lp~~d~sfD~Vls~~~~~--~-----------~~--------- 73 (297)
.|+..|++..-++.|++++.... .++.++.+++- .++ ..||+|+++-.+. . -|
T Consensus 136 ~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d 212 (280)
T COG2890 136 EVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD 212 (280)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc
Confidence 55567889999999998876654 55666666543 332 3899999985311 0 00
Q ss_pred ----hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC-cccc
Q 022411 74 ----GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG-FLDA 123 (297)
Q Consensus 74 ----~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG-Fv~v 123 (297)
...++.++.+.|+|||.+++...... ...+...+...| |..+
T Consensus 213 Gl~~~~~i~~~a~~~l~~~g~l~le~g~~q--------~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 213 GLEVYRRILGEAPDILKPGGVLILEIGLTQ--------GEAVKALFEDTGFFEIV 259 (280)
T ss_pred HHHHHHHHHHhhHHHcCCCcEEEEEECCCc--------HHHHHHHHHhcCCceEE
Confidence 14677888999999888887654221 125667788889 4443
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=85.22 E-value=0.96 Score=42.57 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHhhh----c-CCCeEEEEccCCCC-CCCCCcccEEEeccccC-----CCChHHHHHHHHhcccCCc
Q 022411 21 VSAVLNAIRDLGDEAVEQ----C-DPQIITQASSLSQL-PVESFSIDTVLSISSSH-----ELPGDQLLEEISRVLKPGG 89 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~----~-~~~v~~~~~d~~~L-p~~d~sfD~Vls~~~~~-----~~~~~~~L~ei~RvLKPGG 89 (297)
+-++-+++++.+++-... . ++++..+.+|.... .-...+||+|+.-..-. .+....+++.+.|.|+++|
T Consensus 105 ~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 105 MVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred EEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 446667888888875422 1 58899999888644 22233899999876432 1224789999999999999
Q ss_pred EEEEE
Q 022411 90 TILIY 94 (297)
Q Consensus 90 ~l~i~ 94 (297)
.++..
T Consensus 185 i~v~q 189 (282)
T COG0421 185 IFVAQ 189 (282)
T ss_pred EEEEe
Confidence 99987
No 193
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=1.6 Score=38.20 Aligned_cols=63 Identities=17% Similarity=0.336 Sum_probs=45.7
Q ss_pred CCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411 55 VESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 55 ~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (297)
....+||+|++.-.+..-. -..+..-|.+.|+|.|+.++..+..+ .+++.+..+....||...
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg------~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG------QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc------chHHHHHHHHHhceeEEE
Confidence 3457999999875322211 46789999999999999888877653 234467778888998754
No 194
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=83.26 E-value=1.8 Score=40.60 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhh---hcCCCeEEEEccCCCCCCCCCcccEEEeccccC--CCChHHHHHHHHhcccCCcEEEEEe
Q 022411 24 VLNAIRDLGDEAVE---QCDPQIITQASSLSQLPVESFSIDTVLSISSSH--ELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 24 lse~m~~~A~~~~~---~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~--~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..++-.+.|++-+. .....+.+..+++...+.+-..||+|+...... .-+...++.++.+.++||..+++..
T Consensus 154 ~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 154 IDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp SSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 34445555655333 236679999999987776667999988665222 2236889999999999999999884
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=83.21 E-value=7.5 Score=37.01 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHhhhc-CCCe-EEEEccCCCC-CCC--CCcccEEEeccccCCCCh----HHHHHHHHhcccCCcEE
Q 022411 21 VSAVLNAIRDLGDEAVEQC-DPQI-ITQASSLSQL-PVE--SFSIDTVLSISSSHELPG----DQLLEEISRVLKPGGTI 91 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~-~~~v-~~~~~d~~~L-p~~--d~sfD~Vls~~~~~~~~~----~~~L~ei~RvLKPGG~l 91 (297)
..|+++.-++.+++.++.. ..++ .|.++|+-.. .+. +-..++++.+-.+..|+. ...++-+.++|.|||+|
T Consensus 166 LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~l 245 (311)
T PF12147_consen 166 LRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYL 245 (311)
T ss_pred EEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEE
Confidence 5567777777777766543 4454 8888876432 122 234577766654555663 45678899999999999
Q ss_pred EEEecC-CCCccchH----------------HHHHHHHHHHHHCCcccccc
Q 022411 92 LIYKKL-TSDKGDVD----------------KAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 92 ~i~~~~-~~~~g~~~----------------~~~~~l~~~L~laGFv~v~~ 125 (297)
+..... ....+-+. .+-.++......|||..++.
T Consensus 246 IyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 246 IYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred EEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhh
Confidence 877521 11111011 11246777889999997653
No 196
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=82.48 E-value=1.5 Score=41.51 Aligned_cols=78 Identities=12% Similarity=0.027 Sum_probs=52.8
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC-CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
.|...|+++.|++.|+++++.. ..+++++++|+..+.. ..+.||+|+..-.-..+. ..++ ++...++|++.+++.-
T Consensus 197 ~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~-~~~~-~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 197 QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG-KELC-DYLSQMAPRFILYSSC 274 (315)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc-HHHH-HHHHHcCCCeEEEEEC
Confidence 4556688899999998876544 3479999999986542 245799999885422222 2333 4455578888888765
Q ss_pred cC
Q 022411 96 KL 97 (297)
Q Consensus 96 ~~ 97 (297)
..
T Consensus 275 ~p 276 (315)
T PRK03522 275 NA 276 (315)
T ss_pred Cc
Confidence 43
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=82.12 E-value=1.7 Score=38.23 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=49.1
Q ss_pred CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCC
Q 022411 40 DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAG 119 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laG 119 (297)
..|+.++.+.++. +....+||+|++..... ...++.-..+.|++||++++.-... ......+....+...|
T Consensus 97 L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~---l~~l~~~~~~~l~~~G~~l~~KG~~-----~~~El~~~~~~~~~~~ 167 (184)
T PF02527_consen 97 LSNVEVINGRAEE-PEYRESFDVVTARAVAP---LDKLLELARPLLKPGGRLLAYKGPD-----AEEELEEAKKAWKKLG 167 (184)
T ss_dssp -SSEEEEES-HHH-TTTTT-EEEEEEESSSS---HHHHHHHHGGGEEEEEEEEEEESS-------HHHHHTHHHHHHCCC
T ss_pred CCCEEEEEeeecc-cccCCCccEEEeehhcC---HHHHHHHHHHhcCCCCEEEEEcCCC-----hHHHHHHHHhHHHHhC
Confidence 4679999999988 55678999999987432 4678888999999999999876432 1122224445555555
Q ss_pred ccc
Q 022411 120 FLD 122 (297)
Q Consensus 120 Fv~ 122 (297)
...
T Consensus 168 ~~~ 170 (184)
T PF02527_consen 168 LKV 170 (184)
T ss_dssp EEE
T ss_pred CEE
Confidence 543
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=81.37 E-value=2.7 Score=42.41 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-CCCCcccEEEeccc------c--------CCCC---------hHHH
Q 022411 23 AVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISS------S--------HELP---------GDQL 77 (297)
Q Consensus 23 dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~------~--------~~~~---------~~~~ 77 (297)
|++..-++..+++++.. ..++.+...|...++ .-...||.|+.-.. + .|.+ ...+
T Consensus 145 D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~i 224 (470)
T PRK11933 145 EYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQREL 224 (470)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHH
Confidence 44445555555555554 356777777776552 23467999995431 1 1111 1567
Q ss_pred HHHHHhcccCCcEEEEEe
Q 022411 78 LEEISRVLKPGGTILIYK 95 (297)
Q Consensus 78 L~ei~RvLKPGG~l~i~~ 95 (297)
|...++.|||||+|+.++
T Consensus 225 L~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 225 IESAFHALKPGGTLVYST 242 (470)
T ss_pred HHHHHHHcCCCcEEEEEC
Confidence 888999999999997665
No 199
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=80.26 E-value=3.5 Score=39.64 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=44.9
Q ss_pred CCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC----CCCcc-----chHHHHHHHHHHHHHCCcccccch
Q 022411 57 SFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL----TSDKG-----DVDKAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~----~~~~g-----~~~~~~~~l~~~L~laGFv~v~~~ 126 (297)
.++||+|+..+-.-.-+ --..+..|..+|||||.++=.-+. ..+.+ .+.-+.+++.+....-||+.....
T Consensus 257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 34699998775222222 356889999999999998633221 11111 223345688888889999976543
No 200
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=78.95 E-value=5.1 Score=38.95 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=51.1
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCC-CCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPV-ESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~-~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
+...|.+..+++.|+++++.. ..++.+..+++..+.. ....||+|+..-....+. ..++..+. .++|++.+++.-
T Consensus 258 v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~-~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 258 LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGIG-KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc-HHHHHHHH-hcCCCeEEEEEe
Confidence 445577788888888876554 2479999999875421 124699999986543222 45566564 479999888775
No 201
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=78.79 E-value=3.5 Score=34.86 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCC--CCCCcccEEEecccc-----CCC---C--hHHHHHHHHhcccCC
Q 022411 23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLP--VESFSIDTVLSISSS-----HEL---P--GDQLLEEISRVLKPG 88 (297)
Q Consensus 23 dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp--~~d~sfD~Vls~~~~-----~~~---~--~~~~L~ei~RvLKPG 88 (297)
|+-++.++..+++.++. ..++.++..+=+++. ++.+.+|+|+.++.+ +.+ + .-.++..+.+.|+||
T Consensus 6 DIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~g 85 (140)
T PF06962_consen 6 DIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPG 85 (140)
T ss_dssp ES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEE
T ss_pred ECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccC
Confidence 44455666666666543 346888887666664 233589999988631 111 1 257899999999999
Q ss_pred cEEEEEecC
Q 022411 89 GTILIYKKL 97 (297)
Q Consensus 89 G~l~i~~~~ 97 (297)
|.+.|.-..
T Consensus 86 G~i~iv~Y~ 94 (140)
T PF06962_consen 86 GIITIVVYP 94 (140)
T ss_dssp EEEEEEE--
T ss_pred CEEEEEEeC
Confidence 999887654
No 202
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=77.48 E-value=6.9 Score=36.40 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHhhhcC--CCeEEEEccC-CCCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEE
Q 022411 21 VSAVLNAIRDLGDEAVEQCD--PQIITQASSL-SQLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~--~~v~~~~~d~-~~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~ 94 (297)
..|.++.|++.++.-..... ....+..... ...++. ..|+|++.+++..++. ..+++.+.+.+.+ .|+|.
T Consensus 63 ~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlV 138 (274)
T PF09243_consen 63 CVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLV 138 (274)
T ss_pred eecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEE
Confidence 45677788888876443321 1111111111 112322 3399999998888874 3455555555544 89999
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCccccc
Q 022411 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
|++... . -..+.+++..|...||..+.
T Consensus 139 EpGt~~--G-f~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 139 EPGTPA--G-FRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred cCCChH--H-HHHHHHHHHHHhhCCCceEC
Confidence 886421 1 12344667777777877654
No 203
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=75.37 E-value=5.8 Score=38.94 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=47.3
Q ss_pred CCeEEEEccCCCC--CCCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 41 PQIITQASSLSQL--PVESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 41 ~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
.++.+..+++... -.++++||.++..-.+-|++ ....+++|.|.++|||++++.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 6788888887654 24589999998887778887 3688999999999999999987664
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=75.28 E-value=7.3 Score=41.16 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=54.5
Q ss_pred ccChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCC--CcccEEEeccccCC-CC----hHHHHHHHHhcc---
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVES--FSIDTVLSISSSHE-LP----GDQLLEEISRVL--- 85 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d--~sfD~Vls~~~~~~-~~----~~~~L~ei~RvL--- 85 (297)
.+...|+.+.+++.|+.++... ...+.+.++|+.+++.+. ++||+|+++..+.. +. ...++.++.+.|
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 3456788899999999887654 345889999998886543 57999999975432 21 233444444444
Q ss_pred cCCcEEEEEec
Q 022411 86 KPGGTILIYKK 96 (297)
Q Consensus 86 KPGG~l~i~~~ 96 (297)
.||+++++...
T Consensus 338 ~~g~~~~llt~ 348 (702)
T PRK11783 338 FGGWNAALFSS 348 (702)
T ss_pred CCCCeEEEEeC
Confidence 49999977754
No 205
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=74.93 E-value=7.5 Score=37.24 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHhh-hcCCCeEE--EEccCCC----CCC--CCCcccEEEec-cccCCCCh---HHHHHHHHh-ccc
Q 022411 21 VSAVLNAIRDLGDEAVE-QCDPQIIT--QASSLSQ----LPV--ESFSIDTVLSI-SSSHELPG---DQLLEEISR-VLK 86 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~-~~~~~v~~--~~~d~~~----Lp~--~d~sfD~Vls~-~~~~~~~~---~~~L~ei~R-vLK 86 (297)
..|++.++++.+.+++. ...+.+.+ +.++... +|- ......+|+.. +++..+++ ..+|+++.+ .|+
T Consensus 109 plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~ 188 (319)
T TIGR03439 109 ALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS 188 (319)
T ss_pred EEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC
Confidence 55888888888887776 55666665 5776643 321 12345666554 45667763 578899999 999
Q ss_pred CCcEEEEEe
Q 022411 87 PGGTILIYK 95 (297)
Q Consensus 87 PGG~l~i~~ 95 (297)
|||.|+|-.
T Consensus 189 ~~d~lLiG~ 197 (319)
T TIGR03439 189 PSDSFLIGL 197 (319)
T ss_pred CCCEEEEec
Confidence 999998864
No 206
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=74.86 E-value=1.5 Score=27.58 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.0
Q ss_pred CCCcc-----------ccccCCCC
Q 022411 236 ACGMW-----------TWRCFPLR 248 (297)
Q Consensus 236 sCGnC-----------AFRC~~CP 248 (297)
.||+| .|||+.|-
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~ 26 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQ 26 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCC
Confidence 48888 89999994
No 207
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=74.41 E-value=7.9 Score=38.11 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCCCcccEEEeccccCCCC--hHHHH-------------------------------------HHHHhcccCCcEEEEE
Q 022411 54 PVESFSIDTVLSISSSHELP--GDQLL-------------------------------------EEISRVLKPGGTILIY 94 (297)
Q Consensus 54 p~~d~sfD~Vls~~~~~~~~--~~~~L-------------------------------------~ei~RvLKPGG~l~i~ 94 (297)
=||.+|.+++++.+++||+. |..+. +-=++-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 37899999999999999986 33221 1113458899999998
Q ss_pred ecCCCCccc-----hHHH----HHHHHHHHHHCCcccccchh
Q 022411 95 KKLTSDKGD-----VDKA----ISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 95 ~~~~~~~g~-----~~~~----~~~l~~~L~laGFv~v~~~~ 127 (297)
..+...... .... ....-.+|..-|.++.+...
T Consensus 237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~d 278 (386)
T PLN02668 237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRD 278 (386)
T ss_pred EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 765432111 1111 23334567788888766543
No 208
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=74.30 E-value=6.6 Score=34.61 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=48.1
Q ss_pred hcCCCeEEEEccCCCCC-----CCCCcccEEEeccccCCCC---hHHHHHHHHhcccCCcEEEEEecC
Q 022411 38 QCDPQIITQASSLSQLP-----VESFSIDTVLSISSSHELP---GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 38 ~~~~~v~~~~~d~~~Lp-----~~d~sfD~Vls~~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+.++.+.++.||+..+. +.+.-||.|+|...+..++ .-+.|+++...|.+||.|+-...+
T Consensus 91 ~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 91 QLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 34666778888887664 5677899999999888887 367899999999999999876654
No 209
>PF08090 Enterotoxin_HS1: Heat stable E.coli enterotoxin 1; InterPro: IPR012557 Heat-stable toxin 1 of entero-aggregative Escherichia coli (EAST1) is a small toxin. It is not, however, solely associated with entero-aggregative E. coli but also with many other diarrhoeic E. coli families. Some studies have established the role of EAST1 in some human outbreaks of diarrhoea. Isolates from farm animals have been shown to carry the astA gene coding for EAST1. However, the relation between the presence of EAST1 and disease is not conclusive [].
Probab=73.90 E-value=1.1 Score=28.21 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=15.9
Q ss_pred CCCCCCCcc---ccccCCCCCC
Q 022411 232 NPQSACGMW---TWRCFPLRYM 250 (297)
Q Consensus 232 ~~~ssCGnC---AFRC~~CPYl 250 (297)
.|.|||.|| .--|++||=+
T Consensus 7 ~pass~asciwc~tac~s~~gr 28 (36)
T PF08090_consen 7 RPASSCASCIWCTTACGSCHGR 28 (36)
T ss_pred ccccchhhHHHHHhhhccCCCC
Confidence 478999999 7779999865
No 210
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.42 E-value=3.5 Score=37.78 Aligned_cols=82 Identities=24% Similarity=0.254 Sum_probs=51.1
Q ss_pred EEeecCCccChHHHHHHHHHHHHHHh--hhcCCCeEEEEccCC-CC-----CCCCCcccEEEeccccCCCC-hHHHHHHH
Q 022411 11 LALSEDKILPVSAVLNAIRDLGDEAV--EQCDPQIITQASSLS-QL-----PVESFSIDTVLSISSSHELP-GDQLLEEI 81 (297)
Q Consensus 11 Lll~~~~~vt~~dlse~m~~~A~~~~--~~~~~~v~~~~~d~~-~L-----p~~d~sfD~Vls~~~~~~~~-~~~~L~ei 81 (297)
|+|-++..+...++-+.-.+++.+.. +.....|.++++.+. .| ..+.++||.+|.-. |=. -...+.+.
T Consensus 93 lalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa---dK~nY~~y~e~~ 169 (237)
T KOG1663|consen 93 LALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDA---DKDNYSNYYERL 169 (237)
T ss_pred HhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEcc---chHHHHHHHHHH
Confidence 44545555553444444444443322 234567888888553 33 24578999999854 211 13678899
Q ss_pred HhcccCCcEEEEEe
Q 022411 82 SRVLKPGGTILIYK 95 (297)
Q Consensus 82 ~RvLKPGG~l~i~~ 95 (297)
.+.||+||.+++-+
T Consensus 170 l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 170 LRLLRVGGVIVVDN 183 (237)
T ss_pred HhhcccccEEEEec
Confidence 99999999999876
No 211
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=71.23 E-value=7 Score=33.66 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=33.2
Q ss_pred CCCeEEEEccCCC-C---CCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEecC
Q 022411 40 DPQIITQASSLSQ-L---PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 40 ~~~v~~~~~d~~~-L---p~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..++.+..-+... + .+....||+|+..-.+..-. .+.++.-+.++|+|+|.+++....
T Consensus 96 ~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 96 DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ----EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 3456665554432 1 13456899999887555433 578899999999999998777654
No 212
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=70.98 E-value=13 Score=34.02 Aligned_cols=63 Identities=8% Similarity=0.015 Sum_probs=44.9
Q ss_pred cCceEEEeecCC------------ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411 6 MQSAVLALSEDK------------ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (297)
Q Consensus 6 ~~~~VLll~~~~------------~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~ 71 (297)
.+++||-+-.|. .++..++.+.|.+.++++... ..++.++.+|+..++++ .||.|+++..++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--hceEEEEcCCccc
Confidence 355677665554 334456667888888776543 56899999999988865 4899999887654
No 213
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=68.81 E-value=8.4 Score=40.17 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=47.2
Q ss_pred CeEEEEccCCC-CCCCCCcccEEEec-cccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHH
Q 022411 42 QIITQASSLSQ-LPVESFSIDTVLSI-SSSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLL 116 (297)
Q Consensus 42 ~v~~~~~d~~~-Lp~~d~sfD~Vls~-~~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~ 116 (297)
.+....+|+.. ++--...||+|+.- |+-...| ...++++|+|.++|||+|.-+.. ...+++.|.
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~-----------a~~vr~~l~ 216 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS-----------AGFVRRGLQ 216 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh-----------HHHHHHHHH
Confidence 34455677742 23222569999964 3322223 47899999999999999984431 226788999
Q ss_pred HCCccc
Q 022411 117 LAGFLD 122 (297)
Q Consensus 117 laGFv~ 122 (297)
.+||..
T Consensus 217 ~~GF~v 222 (662)
T PRK01747 217 EAGFTV 222 (662)
T ss_pred HcCCee
Confidence 999974
No 214
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=68.29 E-value=38 Score=30.07 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=57.2
Q ss_pred cCceEEEeecCCccC-hHHHHH------------HHHHHHHHHhhhcC--CCeEEEEccCCCC-C-CCCC-cccEEEecc
Q 022411 6 MQSAVLALSEDKILP-VSAVLN------------AIRDLGDEAVEQCD--PQIITQASSLSQL-P-VESF-SIDTVLSIS 67 (297)
Q Consensus 6 ~~~~VLll~~~~~vt-~~dlse------------~m~~~A~~~~~~~~--~~v~~~~~d~~~L-p-~~d~-sfD~Vls~~ 67 (297)
.|.++|-|.-|+..- .+.+|. ....+.+++++... .+...+..|+... + .... .||+|+.--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 367888887766543 444443 44555556655544 6777777777632 1 2222 499999988
Q ss_pred ccCCCC--hHHHHHH--HHhcccCCcEEEEEecCC
Q 022411 68 SSHELP--GDQLLEE--ISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 68 ~~~~~~--~~~~L~e--i~RvLKPGG~l~i~~~~~ 98 (297)
.+++-. ....+.. -...|+|+|.+++.....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 777422 2333333 457899999999876543
No 215
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=67.59 E-value=11 Score=36.40 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=42.1
Q ss_pred CCeEEEEccCC-CCCCCCCcccEEEeccccCCCCh---HHHHHHHHhcccCCcEEEEEecC
Q 022411 41 PQIITQASSLS-QLPVESFSIDTVLSISSSHELPG---DQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 41 ~~v~~~~~d~~-~Lp~~d~sfD~Vls~~~~~~~~~---~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
+.|..+.+++- ++| . -|+|+.-+.+|++.. -++|+..+..|+|||++++.+..
T Consensus 221 ~gV~~v~gdmfq~~P--~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 221 PGVEHVAGDMFQDTP--K--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred CCcceecccccccCC--C--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 45788877774 455 2 348999998888773 68999999999999999999874
No 216
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=67.17 E-value=6.4 Score=38.56 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=49.7
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEE
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~ 94 (297)
|..-|+.+...+.++++++.. ..++.+..+|+..+-.....||+|+..- + .. +..++....+.+++||.++++
T Consensus 84 V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-Gs-~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 84 VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-GS-PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-CC-cHHHHHHHHHHhcCCCEEEEE
Confidence 344466667777777766433 3456688888875422145799999864 2 11 356788878889999999998
No 217
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=66.89 E-value=16 Score=35.13 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=44.3
Q ss_pred EccCCCCCCCCCcccEEEeccccCCCC--h----H-------------------HH---------------HHHHHhccc
Q 022411 47 ASSLSQLPVESFSIDTVLSISSSHELP--G----D-------------------QL---------------LEEISRVLK 86 (297)
Q Consensus 47 ~~d~~~Lp~~d~sfD~Vls~~~~~~~~--~----~-------------------~~---------------L~ei~RvLK 86 (297)
-++...==||++|.|++++.+++||+. | . .+ |+-=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 456654448899999999999999975 2 1 11 111134588
Q ss_pred CCcEEEEEecCCCCc-------cchHHHHHHHHHHHHHCCcccccch
Q 022411 87 PGGTILIYKKLTSDK-------GDVDKAISALEGKLLLAGFLDAQRI 126 (297)
Q Consensus 87 PGG~l~i~~~~~~~~-------g~~~~~~~~l~~~L~laGFv~v~~~ 126 (297)
|||++++...+.... ...-......-++|..-|.++.+..
T Consensus 175 ~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~ 221 (334)
T PF03492_consen 175 PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKV 221 (334)
T ss_dssp EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCC
T ss_pred cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHh
Confidence 999999987664321 1112233445567888898876544
No 218
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=65.95 E-value=24 Score=29.36 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=48.6
Q ss_pred CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccchh
Q 022411 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQRIQ 127 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~~~ 127 (297)
+..+|+|+..+-----.....|--+.+.|..+|.+.+..|..+..+.... ..+......+|++..+...
T Consensus 43 ddvvD~vllWwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~--~~I~eaA~taGL~~t~~~~ 111 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEP--SDIREAAPTAGLVQTKSCA 111 (127)
T ss_pred cccccEEEEEEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCH--HHHHHHHhhcCCeeeeeec
Confidence 45678877755322222456777888999999999999988765554432 3677788999999876543
No 219
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.75 E-value=16 Score=35.79 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.3
Q ss_pred cccEEEeccccCCC----ChHHHHHHHHhcccCCcEEEEEecCC
Q 022411 59 SIDTVLSISSSHEL----PGDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 59 sfD~Vls~~~~~~~----~~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
.|++|+....+.+. +....+..+..++.|||.|+|.+.+.
T Consensus 185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 57777765433222 23458999999999999999999864
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=64.89 E-value=16 Score=36.05 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=73.3
Q ss_pred ccccCceEEEeecCCccC--------------hHHHHHHHHHHHHHHh------hh--cCCCeEEEEccCCCC-CCCCCc
Q 022411 3 TGKMQSAVLALSEDKILP--------------VSAVLNAIRDLGDEAV------EQ--CDPQIITQASSLSQL-PVESFS 59 (297)
Q Consensus 3 ~~~~~~~VLll~~~~~vt--------------~~dlse~m~~~A~~~~------~~--~~~~v~~~~~d~~~L-p~~d~s 59 (297)
+++.-.+||+|-.|-.+. .-|+=++|++.++++. +. .++++..+..|+-+. --..+.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 344445688886655443 2245568888887431 11 267899888877543 334568
Q ss_pred ccEEEeccc------cCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccc
Q 022411 60 IDTVLSISS------SHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDA 123 (297)
Q Consensus 60 fD~Vls~~~------~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v 123 (297)
||+|+.-.. +-.+.+.+++.-+.|.|+++|.++++-...-. .++ ..=.+...++.|||...
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~--tp~-vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF--TPR-VFWRIDATIKSAGYRVW 432 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc--CCc-eeeeehhHHHhCcceee
Confidence 999998653 22222467888899999999999987543210 011 11134567889998753
No 221
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=64.78 E-value=17 Score=32.44 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=33.2
Q ss_pred cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411 39 CDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 39 ~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~ 92 (297)
....+....+|...++. ...||.|+...... ...+|..+.+++|+||.+.
T Consensus 150 v~~~i~~~~~D~~~~~~-~~~~drvim~lp~~---~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 150 VENRIEVINGDAREFLP-EGKFDRVIMNLPES---SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TTTEEEEES-GGG----TT-EEEEEE--TSS---GGGGHHHHHHHEEEEEEEE
T ss_pred CCCeEEEEcCCHHHhcC-ccccCEEEECChHH---HHHHHHHHHHHhcCCcEEE
Confidence 34568889999987754 78999999986432 2357888999999999875
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=64.10 E-value=23 Score=32.12 Aligned_cols=111 Identities=21% Similarity=0.214 Sum_probs=66.6
Q ss_pred CceEEEeecCCccC-hH----------HHHHHHHHHHH---HHhhhc-CCCeEEEEccCCCCCCCCCcccEEEeccccCC
Q 022411 7 QSAVLALSEDKILP-VS----------AVLNAIRDLGD---EAVEQC-DPQIITQASSLSQLPVESFSIDTVLSISSSHE 71 (297)
Q Consensus 7 ~~~VLll~~~~~vt-~~----------dlse~m~~~A~---~~~~~~-~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~ 71 (297)
+.+++-+-+|+..+ +| .+++...+.+. +-.... ..|++++.+.++.+.-....||+|++.....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 45788888877776 22 23344444432 112233 5679999999998763222299999986322
Q ss_pred CChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 72 LPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 72 ~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
...++.-....||+||.+++.-.... ..-..+.+......||.....
T Consensus 147 --L~~l~e~~~pllk~~g~~~~~k~~~~-----~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 147 --LNVLLELCLPLLKVGGGFLAYKGLAG-----KDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred --hHHHHHHHHHhcccCCcchhhhHHhh-----hhhHHHHHHHHHhhcCcEEEE
Confidence 24566667889999999864433211 112235566666777765544
No 223
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.02 E-value=12 Score=36.68 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCC-CC----hHHHHHH----HHhcccCCcEE
Q 022411 23 AVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHE-LP----GDQLLEE----ISRVLKPGGTI 91 (297)
Q Consensus 23 dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~-~~----~~~~L~e----i~RvLKPGG~l 91 (297)
|+-..|++.|+.|+... ...|+|.++++..++-+-..||+|+++..+-. +. ...++.+ +.+.++--+++
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE
Confidence 55678899998887554 55699999999988644478999999975322 11 1223444 44555556666
Q ss_pred EEEec
Q 022411 92 LIYKK 96 (297)
Q Consensus 92 ~i~~~ 96 (297)
++...
T Consensus 341 v~tt~ 345 (381)
T COG0116 341 VFTTS 345 (381)
T ss_pred EEEcc
Confidence 66543
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=63.73 E-value=12 Score=36.27 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=45.1
Q ss_pred ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC---CCCCcccEEEeccc------------cCCC--C--------
Q 022411 20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP---VESFSIDTVLSISS------------SHEL--P-------- 73 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp---~~d~sfD~Vls~~~------------~~~~--~-------- 73 (297)
...|+...-++..++++... ..++.....|...++ ...+.||.|+.-.. ..|. +
T Consensus 186 ~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~ 265 (355)
T COG0144 186 VAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAK 265 (355)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHH
Confidence 34445554444445555554 344666666665443 22235999997431 1111 1
Q ss_pred -hHHHHHHHHhcccCCcEEEEEe
Q 022411 74 -GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 74 -~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..++|...+++|||||+|+..+
T Consensus 266 lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 266 LQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEc
Confidence 1468888999999999998775
No 225
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=63.44 E-value=7.4 Score=36.71 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=50.6
Q ss_pred cChHHHHHHHHHHHHHHhhhc---CCCeEEEEccCCC-CC-C-CCCcccEEEecccc---CCCC----hHHHHHHHHhcc
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC---DPQIITQASSLSQ-LP-V-ESFSIDTVLSISSS---HELP----GDQLLEEISRVL 85 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~---~~~v~~~~~d~~~-Lp-~-~d~sfD~Vls~~~~---~~~~----~~~~L~ei~RvL 85 (297)
|+.-|++...+++|+++.+-. ...+.++.+|+-. +. + ....||+|+.--.. ..+. -..++..+.++|
T Consensus 149 v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll 228 (286)
T PF10672_consen 149 VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLL 228 (286)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTE
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456688999999999876432 2578999988753 21 1 24689999986421 1121 256788899999
Q ss_pred cCCcEEEEEecC
Q 022411 86 KPGGTILIYKKL 97 (297)
Q Consensus 86 KPGG~l~i~~~~ 97 (297)
+|||.|++....
T Consensus 229 ~~gG~l~~~scs 240 (286)
T PF10672_consen 229 KPGGLLLTCSCS 240 (286)
T ss_dssp EEEEEEEEEE--
T ss_pred CCCCEEEEEcCC
Confidence 999999866543
No 226
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=62.85 E-value=19 Score=36.05 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=36.7
Q ss_pred CCCeEEEEccCCCCCCCCCcccEEEeccc----cCCCChHHHHHHHHhcccCCcEEE
Q 022411 40 DPQIITQASSLSQLPVESFSIDTVLSISS----SHELPGDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~----~~~~~~~~~L~ei~RvLKPGG~l~ 92 (297)
...|+++.++++.+..+. .+|+|+|-.. .+.+ ..+.|....|.|||||.++
T Consensus 240 ~~~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPE-KVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTEEEEES-TTTSCHSS--EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEE
T ss_pred CCeEEEEeCcccCCCCCC-ceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEe
Confidence 467999999999987665 8999999652 2222 3467888999999999886
No 227
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=62.84 E-value=3.1 Score=33.06 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=10.7
Q ss_pred cc-ccccCCCCCC
Q 022411 239 MW-TWRCFPLRYM 250 (297)
Q Consensus 239 nC-AFRC~~CPYl 250 (297)
+| .|-|.+|||.
T Consensus 18 ~~~rf~C~tCpY~ 30 (105)
T KOG2906|consen 18 SCNRFSCRTCPYV 30 (105)
T ss_pred eEeeEEcCCCCce
Confidence 37 9999999996
No 228
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=61.60 E-value=16 Score=34.60 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCC---CCccchHHHHHHHHHHHHHCCccccc
Q 022411 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLT---SDKGDVDKAISALEGKLLLAGFLDAQ 124 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~---~~~g~~~~~~~~l~~~L~laGFv~v~ 124 (297)
.+.||+|+..+...++-. .++.++++|+|.|++-.... -..+....-...+...+..+||..+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~----p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK----PELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred cCCCCEEEEhhhhHhhcc----hHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 456999987765433321 13888999999998776421 11111222234667778999998654
No 229
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=60.16 E-value=29 Score=29.94 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=45.1
Q ss_pred CCCCcccEEEeccccCC---------C----C-hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022411 55 VESFSIDTVLSISSSHE---------L----P-GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (297)
Q Consensus 55 ~~d~sfD~Vls~~~~~~---------~----~-~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF 120 (297)
+....||.|+-++.... + . ...++....++|+++|.++|.--..... ..| ++......+||
T Consensus 71 ~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py----~~W-~i~~lA~~~gl 145 (166)
T PF10354_consen 71 LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY----DSW-NIEELAAEAGL 145 (166)
T ss_pred ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC----ccc-cHHHHHHhcCC
Confidence 35688999999985332 1 0 2567778889999999999886543211 122 45566777999
Q ss_pred ccccch
Q 022411 121 LDAQRI 126 (297)
Q Consensus 121 v~v~~~ 126 (297)
+-....
T Consensus 146 ~l~~~~ 151 (166)
T PF10354_consen 146 VLVRKV 151 (166)
T ss_pred EEEEEe
Confidence 876543
No 230
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=58.62 E-value=24 Score=34.17 Aligned_cols=114 Identities=13% Similarity=0.141 Sum_probs=69.7
Q ss_pred ccccCceEEEeecCC------------c-cChHHHHHHHHHHHHHHhh--hcCCCeEEEEccCCCCCCCCCcccEEEecc
Q 022411 3 TGKMQSAVLALSEDK------------I-LPVSAVLNAIRDLGDEAVE--QCDPQIITQASSLSQLPVESFSIDTVLSIS 67 (297)
Q Consensus 3 ~~~~~~~VLll~~~~------------~-vt~~dlse~m~~~A~~~~~--~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~ 67 (297)
.++.|.+||-...|. . |...|+.+.-.+..++++. .....+..++||....+..-..||.|+.++
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345566766654432 2 3333444544444444432 233448899999988876668899999986
Q ss_pred ccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCc
Q 022411 68 SSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGF 120 (297)
Q Consensus 68 ~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGF 120 (297)
... ...++....+.|++||.+.+++..+..... ......+.......|+
T Consensus 265 p~~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 PKS---AHEFLPLALELLKDGGIIHYYEFVPEDDIE-ERPEKRIKSAARKGGY 313 (341)
T ss_pred CCc---chhhHHHHHHHhhcCcEEEEEeccchhhcc-cchHHHHHHHHhhccC
Confidence 421 245778888899999999999877542211 0112345555555665
No 231
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=58.54 E-value=20 Score=35.11 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccc-cCCCC--hHHHHHHHHhcccCCcEEE
Q 022411 26 NAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISS-SHELP--GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 26 e~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~-~~~~~--~~~~L~ei~RvLKPGG~l~ 92 (297)
.+|.+.|++.++.. ..+|.++.|.++.+.+| +..|+|++--. ...+. --+.+-...|.|||.|.++
T Consensus 209 S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 209 SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 37888888765543 45788999999988777 57999998642 12222 1122334669999999997
No 232
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=58.24 E-value=13 Score=33.85 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCccc---EEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSID---TVLSISSSHELPGDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD---~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~ 92 (297)
..+..+.|.+.++++... ..++.++.+|+..++++ .|| .|+++..++. ....+.++.. .+++...
T Consensus 56 ~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i--~~~il~~ll~--~~~~~~~ 123 (253)
T TIGR00755 56 AIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNI--SSPLIFKLLE--KPKFRLA 123 (253)
T ss_pred EEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--HcCCcceEEEcCChhh--HHHHHHHHhc--cCCCceE
Confidence 446666788777765432 56899999999998876 577 7888765543 2344445544 4554443
No 233
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=58.03 E-value=14 Score=35.79 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhh--cCCCeEEEEccCCCCCCCCCcccEEEeccccCCCC----hHHHHHHHHhcccCCcEEE
Q 022411 27 AIRDLGDEAVEQ--CDPQIITQASSLSQLPVESFSIDTVLSISSSHELP----GDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 27 ~m~~~A~~~~~~--~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~ 92 (297)
.|.+.|++.+.. ....|+++.+.++.+.+|-..+|+|++-+.-.++. ...+|-.=-+-|+|||.++
T Consensus 93 ~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 93 SIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 344555554322 23358888999988877788999999976433322 3555655668899999987
No 234
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=56.99 E-value=17 Score=31.88 Aligned_cols=89 Identities=11% Similarity=-0.034 Sum_probs=52.2
Q ss_pred CceEEEeecCCc-------------cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCC-CC-C-CC-CcccEEEecc
Q 022411 7 QSAVLALSEDKI-------------LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQ-LP-V-ES-FSIDTVLSIS 67 (297)
Q Consensus 7 ~~~VLll~~~~~-------------vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~-Lp-~-~d-~sfD~Vls~~ 67 (297)
|.+||-|..|+. |+..|......+.++++++.. ..+++++.+|+.. +. + .. ..||+|+.--
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 566777765543 334455667777777766543 2368888888843 22 2 12 2478888765
Q ss_pred ccCCCChHHHHHHHHh--cccCCcEEEEEe
Q 022411 68 SSHELPGDQLLEEISR--VLKPGGTILIYK 95 (297)
Q Consensus 68 ~~~~~~~~~~L~ei~R--vLKPGG~l~i~~ 95 (297)
.+..-....++..+.+ +|+++|.+++..
T Consensus 130 Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 5443223445555544 688888776543
No 235
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=56.02 E-value=7.4 Score=33.66 Aligned_cols=24 Identities=46% Similarity=0.738 Sum_probs=20.0
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
....+.+++|+|||||.+++....
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 367899999999999999887654
No 236
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=55.19 E-value=6.8 Score=35.76 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=31.6
Q ss_pred CCcccEEEeccccC-CCChHHHHHHHHhcccC-CcEEEEEe
Q 022411 57 SFSIDTVLSISSSH-ELPGDQLLEEISRVLKP-GGTILIYK 95 (297)
Q Consensus 57 d~sfD~Vls~~~~~-~~~~~~~L~ei~RvLKP-GG~l~i~~ 95 (297)
+-.||+|.+...+- ++.+-.+|.-|+.+|.| +|++++.-
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 44699999987664 44578899999999999 99988763
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=55.13 E-value=5.4 Score=30.86 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=35.5
Q ss_pred CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-hHHHHHHHHhcccCCcEEEEEe
Q 022411 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 40 ~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..++.++.++.... .++...||+|+.-. .|..+ ....+..+.+.|+|||.+++.+
T Consensus 48 ~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 48 SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 45799998877532 23367899998865 33333 4567888999999999998764
No 238
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=53.92 E-value=49 Score=31.52 Aligned_cols=81 Identities=20% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCccChHHHHHHHHHHHHHHhhhc--CCCeEEEE----ccC-CCCCCCCCcccEEEeccccCC--------------CC-
Q 022411 16 DKILPVSAVLNAIRDLGDEAVEQC--DPQIITQA----SSL-SQLPVESFSIDTVLSISSSHE--------------LP- 73 (297)
Q Consensus 16 ~~~vt~~dlse~m~~~A~~~~~~~--~~~v~~~~----~d~-~~Lp~~d~sfD~Vls~~~~~~--------------~~- 73 (297)
+.+++..|++...+..|.+|+... ...+..+. ++. ...++..+.+|+++++-.+.. -+
T Consensus 172 ~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~ 251 (328)
T KOG2904|consen 172 QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPK 251 (328)
T ss_pred CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCch
Confidence 556678899999999998887543 34455552 232 234566899999999853110 00
Q ss_pred ------------hHHHHHHHHhcccCCcEEEEEec
Q 022411 74 ------------GDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 74 ------------~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
...++.-.-|.|+|||.+.+...
T Consensus 252 lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 252 LALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 02344556789999999887655
No 239
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=53.03 E-value=5.5 Score=22.66 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=7.2
Q ss_pred cccCCCCCCCC
Q 022411 242 WRCFPLRYMPL 252 (297)
Q Consensus 242 FRC~~CPYlGl 252 (297)
|||.-|+|...
T Consensus 1 y~C~~C~y~t~ 11 (24)
T PF13909_consen 1 YKCPHCSYSTS 11 (24)
T ss_dssp EE-SSSS-EES
T ss_pred CCCCCCCCcCC
Confidence 79999999753
No 240
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=51.65 E-value=7.7 Score=28.91 Aligned_cols=11 Identities=36% Similarity=0.497 Sum_probs=6.2
Q ss_pred CCccccccCCC
Q 022411 237 CGMWTWRCFPL 247 (297)
Q Consensus 237 CGnCAFRC~~C 247 (297)
||-|.|||.+|
T Consensus 55 c~~~g~rCgGC 65 (79)
T TIGR03601 55 CGGCGGRCGGC 65 (79)
T ss_pred cCCcCccccCc
Confidence 44446666666
No 241
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=50.46 E-value=31 Score=30.01 Aligned_cols=70 Identities=24% Similarity=0.241 Sum_probs=34.0
Q ss_pred HHHHHHHHhcccCCcEEEEEecCCC-CccchH----HHHHHHHHHHHHCCcccccchhcccc-CccceeEeeeeecCCC
Q 022411 75 DQLLEEISRVLKPGGTILIYKKLTS-DKGDVD----KAISALEGKLLLAGFLDAQRIQLKSV-VPAEVVSFGVKGKKPT 147 (297)
Q Consensus 75 ~~~L~ei~RvLKPGG~l~i~~~~~~-~~g~~~----~~~~~l~~~L~laGFv~v~~~~~kp~-~~~~~~~~~i~akKP~ 147 (297)
..++.-+++.|.|||+|+|.-..+. +...+. .....+-..|..+||+-...+- =|. ..+ ...++.|.||-
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWY-fPEG~~E--Gg~KlQa~Kpl 141 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWY-FPEGGME--GGPKLQAEKPL 141 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE---TTTST--T-EEEEEE--S
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeee-ccCcccc--CCceeeeecCC
Confidence 5788899999999999998754431 100000 0112567789999999776643 121 112 23467788874
No 242
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=50.41 E-value=8 Score=33.86 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=53.5
Q ss_pred CceEEEeecCCccC-hH------------HHHHHHHHHHHHHhhhcC--CCeEEEEccCC-CCC---CCCCcccEEEecc
Q 022411 7 QSAVLALSEDKILP-VS------------AVLNAIRDLGDEAVEQCD--PQIITQASSLS-QLP---VESFSIDTVLSIS 67 (297)
Q Consensus 7 ~~~VLll~~~~~vt-~~------------dlse~m~~~A~~~~~~~~--~~v~~~~~d~~-~Lp---~~d~sfD~Vls~~ 67 (297)
|.+||-|..|+..= .+ +......+..+++++... ..+..+..|.. .++ .....||+|+.--
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 56777776665532 32 334445555566665542 34777777743 332 2468999999987
Q ss_pred ccCCCC-hHHHHHHHH--hcccCCcEEEEEecC
Q 022411 68 SSHELP-GDQLLEEIS--RVLKPGGTILIYKKL 97 (297)
Q Consensus 68 ~~~~~~-~~~~L~ei~--RvLKPGG~l~i~~~~ 97 (297)
.+..-. ...++..+. .+|+++|.+++....
T Consensus 123 PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 123 PYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 665443 266777777 799999988876544
No 243
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=50.35 E-value=49 Score=30.97 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=53.0
Q ss_pred ccccCceEEEeec--CCccC-hHHHHH--------HHHHH-HHH--HhhhcCCCeEEEEccCCCC---CCCCCcccEEEe
Q 022411 3 TGKMQSAVLALSE--DKILP-VSAVLN--------AIRDL-GDE--AVEQCDPQIITQASSLSQL---PVESFSIDTVLS 65 (297)
Q Consensus 3 ~~~~~~~VLll~~--~~~vt-~~dlse--------~m~~~-A~~--~~~~~~~~v~~~~~d~~~L---p~~d~sfD~Vls 65 (297)
++|-|..||+|-- +++|+ +.|++- +...+ .+. +.++.-+||..+.-|+..- -+--..+|+|++
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 5678899999954 55555 444432 11111 122 1233346777777666431 111235788887
Q ss_pred ccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 66 ISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 66 ~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
-.... -....+.-...--||+||.|+|+...
T Consensus 233 Dvaqp-dq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 DVAQP-DQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred cCCCc-hhhhhhhhhhhhhhccCCeEEEEEec
Confidence 64311 11234445677789999999988654
No 244
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=43.97 E-value=9 Score=37.15 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=8.0
Q ss_pred CCCCCcc-cc
Q 022411 234 QSACGMW-TW 242 (297)
Q Consensus 234 ~ssCGnC-AF 242 (297)
+++|||| ||
T Consensus 175 QG~CGSCWAF 184 (372)
T KOG1542|consen 175 QGMCGSCWAF 184 (372)
T ss_pred CCcCcchhhh
Confidence 7999999 66
No 245
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=43.44 E-value=6.5 Score=36.38 Aligned_cols=49 Identities=4% Similarity=0.026 Sum_probs=36.2
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEecccc
Q 022411 19 LPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSS 69 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~ 69 (297)
++..|+.+.|.+.++++... .++.++++|+..+++++-.++.|+++..+
T Consensus 67 v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 67 VTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred EEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 44556777888888765432 68999999999998775446888888653
No 246
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=40.95 E-value=16 Score=21.78 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=6.9
Q ss_pred ccccCCCCC
Q 022411 241 TWRCFPLRY 249 (297)
Q Consensus 241 AFRC~~CPY 249 (297)
.-||+.|-+
T Consensus 16 sVrCa~C~~ 24 (25)
T PF06943_consen 16 SVRCACCHT 24 (25)
T ss_pred CeECCccCc
Confidence 678988865
No 247
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=40.53 E-value=12 Score=33.94 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.8
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCceEee
Q 022411 241 TWRCFPLRYMPLQGSASIQTGREGVTVKQ 269 (297)
Q Consensus 241 AFRC~~CPYlGlPaF~~~~~~~~~~~~~~ 269 (297)
||-|.+|.|+|.| |+| -...||+.|.+
T Consensus 16 ~~~~~~c~~~~~~-~~~-~~v~eGe~v~L 42 (227)
T PHA02826 16 AFLCLYCKYRGGD-LTP-VYAKFGDPMVL 42 (227)
T ss_pred HHhhccchhhCcC-cce-EEecCCCCEEE
Confidence 7999999999999 776 35567877765
No 248
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.39 E-value=12 Score=31.96 Aligned_cols=9 Identities=56% Similarity=0.844 Sum_probs=7.9
Q ss_pred CCCCCCCcc
Q 022411 232 NPQSACGMW 240 (297)
Q Consensus 232 ~~~ssCGnC 240 (297)
+.+|+||||
T Consensus 21 ~~~S~CgsC 29 (150)
T COG3086 21 QRQSACGSC 29 (150)
T ss_pred eccCccccc
Confidence 368999999
No 249
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=39.14 E-value=7.6 Score=31.54 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.3
Q ss_pred ccccCCC-CCCCCCCC
Q 022411 241 TWRCFPL-RYMPLQGS 255 (297)
Q Consensus 241 AFRC~~C-PYlGlPaF 255 (297)
-|||+|| -| ||-|
T Consensus 36 ~fhCsGcv~~--~peF 49 (126)
T PF05566_consen 36 EFHCSGCVKY--MPEF 49 (126)
T ss_dssp EEEEEEEE-S--STTS
T ss_pred eEEEechhhh--Cccc
Confidence 6999999 77 6777
No 250
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=37.16 E-value=11 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.467 Sum_probs=14.0
Q ss_pred CCCCCcc----------ccccCCCCCC
Q 022411 234 QSACGMW----------TWRCFPLRYM 250 (297)
Q Consensus 234 ~ssCGnC----------AFRC~~CPYl 250 (297)
.--||-| +|||--|-|+
T Consensus 20 iYiCgdC~~en~lk~~D~irCReCG~R 46 (62)
T KOG3507|consen 20 IYICGDCGQENTLKRGDVIRCRECGYR 46 (62)
T ss_pred EEEeccccccccccCCCcEehhhcchH
Confidence 3458888 9999999886
No 251
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=36.44 E-value=94 Score=29.66 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=31.8
Q ss_pred cccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 59 sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
.||+|+....-+.-..+..|.++++.|.|||.+++.-..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~ 75 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEK 75 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEecc
Confidence 899999887655444677899999999999999987543
No 252
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=35.53 E-value=98 Score=31.09 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCeEEEEccCCCCC---CCCCcccEEEeccc------------cCCC----------C-hHHHHHHHHhcccCCcEEEE
Q 022411 40 DPQIITQASSLSQLP---VESFSIDTVLSISS------------SHEL----------P-GDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp---~~d~sfD~Vls~~~------------~~~~----------~-~~~~L~ei~RvLKPGG~l~i 93 (297)
..+......|...+| |+. +||.|+.-.. ..+. + ..++|......++|||+|+.
T Consensus 291 v~ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVY 369 (460)
T KOG1122|consen 291 VTNTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVY 369 (460)
T ss_pred CCceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEE
Confidence 445666666776554 555 8999986431 1111 1 25778888999999999987
Q ss_pred Ee
Q 022411 94 YK 95 (297)
Q Consensus 94 ~~ 95 (297)
.+
T Consensus 370 ST 371 (460)
T KOG1122|consen 370 ST 371 (460)
T ss_pred Ee
Confidence 75
No 253
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=35.19 E-value=21 Score=25.60 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=8.7
Q ss_pred cccCCCCCCCCCC
Q 022411 242 WRCFPLRYMPLQG 254 (297)
Q Consensus 242 FRC~~CPYlGlPa 254 (297)
-.|++|||..+=+
T Consensus 12 vdC~~C~h~~ll~ 24 (57)
T PF05484_consen 12 VDCAGCPHRDLLA 24 (57)
T ss_dssp --TTTSTTCCCCT
T ss_pred cCCCCCcchhhhh
Confidence 4799999996544
No 254
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.94 E-value=1.2e+02 Score=24.02 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred eEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCC
Q 022411 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (297)
Q Consensus 9 ~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (297)
+|||+-.+. .|-.-+++.|.+.+++ ....++..+.+...++-....||+|+...-. .-.+.++...+.+-
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~----~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-----~~~~~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE----RGVPLEAAAGAYGSHYDMIPDYDLVILAPQM-----ASYYDELKKDTDRL 71 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH----CCCcEEEEEeeHHHHHHhccCCCEEEEcChH-----HHHHHHHHHHhhhc
Confidence 477887433 7777788888888764 2335666676676666555678988876422 33567888888888
Q ss_pred cEEEEE
Q 022411 89 GTILIY 94 (297)
Q Consensus 89 G~l~i~ 94 (297)
|.-+..
T Consensus 72 ~ipv~~ 77 (99)
T cd05565 72 GIKLVT 77 (99)
T ss_pred CCCEEE
Confidence 775543
No 255
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=34.24 E-value=48 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=30.8
Q ss_pred CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
..||.|+....-..-..+..|.++.+.|+|||.+++.-..
T Consensus 75 ~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~ 114 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGEN 114 (342)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEec
Confidence 5799998876433322467889999999999999988544
No 256
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=33.66 E-value=1.6e+02 Score=27.37 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCCeEEEEccCC-CCCCCCC---cccEEEecc-ccCCCC---hHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHH
Q 022411 40 DPQIITQASSLS-QLPVESF---SIDTVLSIS-SSHELP---GDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISAL 111 (297)
Q Consensus 40 ~~~v~~~~~d~~-~Lp~~d~---sfD~Vls~~-~~~~~~---~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l 111 (297)
...+..+.||+. .+|--+. .+|+++.-. +..--| ...++.++++..+|||++.-. .+..-+
T Consensus 145 ~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~-----------ssA~~v 213 (252)
T COG4121 145 LLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF-----------AAAIAV 213 (252)
T ss_pred hheeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech-----------HHHHHH
Confidence 345666777774 4454444 688887542 111111 368999999999999999711 122367
Q ss_pred HHHHHHCCccccc
Q 022411 112 EGKLLLAGFLDAQ 124 (297)
Q Consensus 112 ~~~L~laGFv~v~ 124 (297)
++.|..+||.-..
T Consensus 214 Rr~L~~aGF~v~~ 226 (252)
T COG4121 214 RRRLEQAGFTVEK 226 (252)
T ss_pred HHHHHHcCceeee
Confidence 8899999998765
No 257
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=32.08 E-value=72 Score=31.24 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCC-CCCCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 20 PVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLP-VESFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 20 t~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp-~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..-|+.....+.++++++.. ..++.+..+|+..+- .....||+|..-. + .. +..++..+.+.+++||.|+++-
T Consensus 73 v~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-Gs-~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 73 FANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-GT-PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-CC-cHHHHHHHHHhcccCCEEEEEe
Confidence 34455555566666655433 235778888877552 1135799998854 2 22 3578999999999999999884
No 258
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=31.90 E-value=87 Score=26.49 Aligned_cols=47 Identities=23% Similarity=0.358 Sum_probs=31.3
Q ss_pred eEEEEccCCCCCCCC-CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEec
Q 022411 43 IITQASSLSQLPVES-FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKK 96 (297)
Q Consensus 43 v~~~~~d~~~Lp~~d-~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~ 96 (297)
...+.++-...+.+. ..+|++++.. +..+.....-|+|||.+++...
T Consensus 40 ~~vris~~~~~~~~~~~~~Dilv~l~-------~~~~~~~~~~l~~~g~vi~ns~ 87 (173)
T PF01558_consen 40 SHVRISDEPIIPSPPVGEADILVALD-------PEALERHLKGLKPGGVVIINSS 87 (173)
T ss_dssp EEEEEESS--SSSS-TSSESEEEESS-------HHHHHHCGTTCETTEEEEEETT
T ss_pred EEEEEecCcCccCcccCCCCEEEEcC-------HHHHHHHhcCcCcCeEEEEECC
Confidence 334455541333333 7899999875 4566688899999999997754
No 259
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.46 E-value=24 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=11.3
Q ss_pred CCCCCCccccccCCCC
Q 022411 233 PQSACGMWTWRCFPLR 248 (297)
Q Consensus 233 ~~ssCGnCAFRC~~CP 248 (297)
.+|+||+|+=| ++|-
T Consensus 22 r~saCg~C~a~-~gCG 36 (154)
T PRK10862 22 VKAGCSSCASR-AGCG 36 (154)
T ss_pred cCCCCcCcCCC-CCch
Confidence 68999999334 7774
No 260
>PHA01519 hypothetical protein
Probab=31.09 E-value=26 Score=28.53 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCceE
Q 022411 248 RYMPLQGSASIQTGREGVTV 267 (297)
Q Consensus 248 PYlGlPaF~~~~~~~~~~~~ 267 (297)
+..|+|+||||..|.-|..+
T Consensus 21 ~~~g~~~~~~~~~g~~~~~w 40 (115)
T PHA01519 21 IFKGLWACKPETSGNNTNKW 40 (115)
T ss_pred HhccCccccccccccCCCcc
Confidence 46799999999998865544
No 261
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=31.04 E-value=27 Score=32.90 Aligned_cols=52 Identities=2% Similarity=-0.085 Sum_probs=38.0
Q ss_pred cChHHHHHHHHHHHHHHhhhc--CCCeEEEEccCCCCCCCCCcccEEEeccccCCC
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC--DPQIITQASSLSQLPVESFSIDTVLSISSSHEL 72 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~--~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~ 72 (297)
++..|+.+.|.+.++++.... ..+++++.+|+...+++ .||.|+++..++..
T Consensus 61 V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlPY~Is 114 (294)
T PTZ00338 61 VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVPYQIS 114 (294)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCCcccC
Confidence 445567778888888766432 46899999999877654 68999998765543
No 262
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=18 Score=34.62 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=7.8
Q ss_pred CCCCCcc-cc
Q 022411 234 QSACGMW-TW 242 (297)
Q Consensus 234 ~ssCGnC-AF 242 (297)
+++||+| ||
T Consensus 128 Qg~CgsCWAF 137 (325)
T KOG1543|consen 128 QGSCGSCWAF 137 (325)
T ss_pred CCcCcchHHH
Confidence 6899999 76
No 263
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.90 E-value=79 Score=24.55 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=43.5
Q ss_pred ceEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccC
Q 022411 8 SAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKP 87 (297)
Q Consensus 8 ~~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKP 87 (297)
-+||++......|.. ++..|.+.+++ .+..+++...+..+++-....||+|+...-+. ..+.++...+.+
T Consensus 4 ~~ILl~C~~G~sSS~-l~~k~~~~~~~----~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-----~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMSTSL-LVNKMNKAAEE----YGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-----YMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchhHHH-HHHHHHHHHHH----CCCcEEEEEecHHHHHhhcCCCCEEEECchHH-----HHHHHHHHHhhh
Confidence 378999886655543 66777776653 33346666666655533335689998864222 245566666655
Q ss_pred CcE
Q 022411 88 GGT 90 (297)
Q Consensus 88 GG~ 90 (297)
-|.
T Consensus 74 ~~i 76 (95)
T TIGR00853 74 KGI 76 (95)
T ss_pred cCC
Confidence 443
No 264
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=30.89 E-value=38 Score=28.76 Aligned_cols=41 Identities=29% Similarity=0.202 Sum_probs=24.8
Q ss_pred CcccEEEeccccC-----------CCC-hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 58 FSIDTVLSISSSH-----------ELP-GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 58 ~sfD~Vls~~~~~-----------~~~-~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
..||+|++-.+.. ... ....+.-..+.|+|||.+++.....
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 6899999865211 111 1334445567799999999887764
No 265
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=30.35 E-value=2.1e+02 Score=27.25 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=48.8
Q ss_pred cCCCeEEEEccCCCCCCC--CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHH---H
Q 022411 39 CDPQIITQASSLSQLPVE--SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALE---G 113 (297)
Q Consensus 39 ~~~~v~~~~~d~~~Lp~~--d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~---~ 113 (297)
...++.+..-|+-..-|. +..+|+|+.-... +-.++-.++.+||.+|.-++.- ....++++ .
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPa----Pw~AiPha~~~lk~~g~r~csF---------SPCIEQvqrtce 221 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPA----PWEAIPHAAKILKDEGGRLCSF---------SPCIEQVQRTCE 221 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEEcCCC----hhhhhhhhHHHhhhcCceEEec---------cHHHHHHHHHHH
Confidence 356777777777655544 4678988876533 3456778888999988533221 12233333 4
Q ss_pred HHHHCCcccccchh
Q 022411 114 KLLLAGFLDAQRIQ 127 (297)
Q Consensus 114 ~L~laGFv~v~~~~ 127 (297)
.|...||+++....
T Consensus 222 ~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 222 ALRSLGFIEIETVE 235 (314)
T ss_pred HHHhCCCceEEEEE
Confidence 57778999987654
No 266
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=29.59 E-value=1.8e+02 Score=29.13 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=61.3
Q ss_pred ccChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCCCCCC---CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQLPVES---FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILI 93 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~Lp~~d---~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i 93 (297)
.|...++++++++.|+++++.. ..|+.|..++++.+.... ..||+|+.--.-.-.. +.+++.+ .-++|-..++|
T Consensus 317 ~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~-~~~lk~l-~~~~p~~IvYV 394 (432)
T COG2265 317 KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD-REVLKQL-AKLKPKRIVYV 394 (432)
T ss_pred EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC-HHHHHHH-HhcCCCcEEEE
Confidence 3445588889999998887654 456999999998775443 4789999875433333 3455544 45688888988
Q ss_pred EecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411 94 YKKLTSDKGDVDKAISALEGKLLLAGFL 121 (297)
Q Consensus 94 ~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (297)
+-.. . +...-...|...||.
T Consensus 395 SCNP-------~-TlaRDl~~L~~~gy~ 414 (432)
T COG2265 395 SCNP-------A-TLARDLAILASTGYE 414 (432)
T ss_pred eCCH-------H-HHHHHHHHHHhCCeE
Confidence 7532 2 222233456777774
No 267
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.22 E-value=54 Score=31.30 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|..+..+|+|||+|.|..+.
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC
Confidence 468899999999999999888763
No 268
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=28.93 E-value=1.1e+02 Score=28.28 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=43.8
Q ss_pred eEEEEccCCCCCCC--CCcccEEEeccccCCC------------------C----hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 43 IITQASSLSQLPVE--SFSIDTVLSISSSHEL------------------P----GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 43 v~~~~~d~~~Lp~~--d~sfD~Vls~~~~~~~------------------~----~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
.....++....+.. ...||+|+++..+... + .-.++..+.+.||+||++.+..+..
T Consensus 107 ~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 107 INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 34566665444432 4789999998532211 0 1257899999999999997776532
Q ss_pred CCccchHHHHHHHHHHHHHCCccc
Q 022411 99 SDKGDVDKAISALEGKLLLAGFLD 122 (297)
Q Consensus 99 ~~~g~~~~~~~~l~~~L~laGFv~ 122 (297)
.-.. ......+++.|...+.+.
T Consensus 187 ~L~~--~~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 187 FLFS--SSSEKKIRKYLLENGYIE 208 (311)
T ss_dssp HHHG--STHHHHHHHHHHHHEEEE
T ss_pred hhhc--cchHHHHHHHHHhhchhh
Confidence 1000 011236777777777764
No 269
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=28.69 E-value=69 Score=28.61 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCeEEEEccCCCCCCCC---CcccEEEeccccCCCChHHHHHHHHhcccCCcEEE
Q 022411 40 DPQIITQASSLSQLPVES---FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTIL 92 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp~~d---~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~ 92 (297)
...+.+..+|+.+.++.. ..-|+|+++.....-.....|.+++.-||||-+++
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE
Confidence 346777788876544221 34689998874322124556788889999998876
No 270
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.58 E-value=1.5e+02 Score=26.62 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=39.7
Q ss_pred CCCeEEEEccCCCCC--------CCCCcccEEEecccc----CC-CC-------hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 40 DPQIITQASSLSQLP--------VESFSIDTVLSISSS----HE-LP-------GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 40 ~~~v~~~~~d~~~Lp--------~~d~sfD~Vls~~~~----~~-~~-------~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
.++|.++++|+..-+ +....+|+|+|-.+- +| .+ -..++.-...+|+|||.+++.....
T Consensus 84 ~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 84 IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 356888888875432 345557999975431 11 11 1456666778999999999988765
No 271
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=28.55 E-value=14 Score=27.06 Aligned_cols=10 Identities=0% Similarity=-0.313 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q 022411 247 LRYMPLQGSA 256 (297)
Q Consensus 247 CPYlGlPaF~ 256 (297)
|||=|-+-|-
T Consensus 21 CP~Cgs~~~t 30 (64)
T COG2093 21 CPVCGSTDLT 30 (64)
T ss_pred CCCCCCcccc
Confidence 7777777774
No 272
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=27.85 E-value=60 Score=31.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
.+.+|....++|+|||+|.|..+.
T Consensus 223 L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHhhCCCcEEEEEEec
Confidence 478999999999999999888763
No 273
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=27.78 E-value=68 Score=30.99 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=47.0
Q ss_pred cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC-C-CC--------------CCcccEEEeccccCCCChHHHHHHH
Q 022411 19 LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-P-VE--------------SFSIDTVLSISSSHELPGDQLLEEI 81 (297)
Q Consensus 19 vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L-p-~~--------------d~sfD~Vls~~~~~~~~~~~~L~ei 81 (297)
|...|.+..+++.|++++... ..++.++.+|+..+ + +. ...||+|+.--.-..+ ...+++.+
T Consensus 231 v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~-~~~~l~~l 309 (362)
T PRK05031 231 VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGL-DDETLKLV 309 (362)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCC-cHHHHHHH
Confidence 334567788888888876543 34799999988653 1 11 2258999987653222 24555555
Q ss_pred HhcccCCcEEEEEec
Q 022411 82 SRVLKPGGTILIYKK 96 (297)
Q Consensus 82 ~RvLKPGG~l~i~~~ 96 (297)
.+ |++.+|+.-.
T Consensus 310 ~~---~~~ivyvSC~ 321 (362)
T PRK05031 310 QA---YERILYISCN 321 (362)
T ss_pred Hc---cCCEEEEEeC
Confidence 44 7888887653
No 274
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=91 Score=27.93 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=62.0
Q ss_pred ccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccC-CC-C-hHHHHHHHHhcccCCcEEEEE
Q 022411 18 ILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH-EL-P-GDQLLEEISRVLKPGGTILIY 94 (297)
Q Consensus 18 ~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~-~~-~-~~~~L~ei~RvLKPGG~l~i~ 94 (297)
.|..-|+=.++++.+++++.....++.|+.+|+..+. ..||.|+.+-.+- +. + ...++...+++- .++.+
T Consensus 70 ~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s----~vVYs 142 (198)
T COG2263 70 RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGSQRRHADRPFLLKALEIS----DVVYS 142 (198)
T ss_pred EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCccccccCCHHHHHHHHHhh----heEEE
Confidence 3344455568888888887777788999999999874 6788888886542 12 2 466777777663 44444
Q ss_pred ecCCCCccchHHHHHHHHHHHHHCCcccccc
Q 022411 95 KKLTSDKGDVDKAISALEGKLLLAGFLDAQR 125 (297)
Q Consensus 95 ~~~~~~~g~~~~~~~~l~~~L~laGFv~v~~ 125 (297)
.+..+ +.+-+++....+||.....
T Consensus 143 iH~a~-------~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 143 IHKAG-------SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred eeccc-------cHHHHHHHHHhcCCeEEEE
Confidence 44332 1224566788889876554
No 275
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=27.30 E-value=3.1e+02 Score=27.69 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred cCceEEEeecCCccChHHHHHHHHHHHHHHhhhcCCC------eEEEEccCCCCCCCCCcccEEEeccc-cCCCC--hHH
Q 022411 6 MQSAVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQ------IITQASSLSQLPVESFSIDTVLSISS-SHELP--GDQ 76 (297)
Q Consensus 6 ~~~~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~------v~~~~~d~~~Lp~~d~sfD~Vls~~~-~~~~~--~~~ 76 (297)
.|.+|||+.-++ ..|...+++...|.+--...+.. +......++ -+..+.||+|+.-++ -|++. .-.
T Consensus 127 ~~~kvllVaaD~--~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~--~ak~~~~DvvIvDTAGRl~ide~Lm~ 202 (451)
T COG0541 127 KGKKVLLVAADT--YRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE--KAKEEGYDVVIVDTAGRLHIDEELMD 202 (451)
T ss_pred cCCceEEEeccc--CChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH--HHHHcCCCEEEEeCCCcccccHHHHH
Confidence 466788885443 34555556665554311111110 111111111 134677999998775 34555 334
Q ss_pred HHHHHHhcccCCcEEEEEecCCCCccchHHHHHHHHHHHHHCCcc
Q 022411 77 LLEEISRVLKPGGTILIYKKLTSDKGDVDKAISALEGKLLLAGFL 121 (297)
Q Consensus 77 ~L~ei~RvLKPGG~l~i~~~~~~~~g~~~~~~~~l~~~L~laGFv 121 (297)
-+.+|.++++|.=+|++.+..-++.. ......+...+-+.|.+
T Consensus 203 El~~Ik~~~~P~E~llVvDam~GQdA--~~~A~aF~e~l~itGvI 245 (451)
T COG0541 203 ELKEIKEVINPDETLLVVDAMIGQDA--VNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHHHHhhcCCCeEEEEEecccchHH--HHHHHHHhhhcCCceEE
Confidence 56778999999999999997654321 11122444555555555
No 276
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=27.03 E-value=75 Score=30.61 Aligned_cols=83 Identities=8% Similarity=0.040 Sum_probs=52.3
Q ss_pred eEEEeecCCc------------cChHHHHHHHHHHHHHHhhhc-CCCeEEEEccCCCC-C-------C---C-----CCc
Q 022411 9 AVLALSEDKI------------LPVSAVLNAIRDLGDEAVEQC-DPQIITQASSLSQL-P-------V---E-----SFS 59 (297)
Q Consensus 9 ~VLll~~~~~------------vt~~dlse~m~~~A~~~~~~~-~~~v~~~~~d~~~L-p-------~---~-----d~s 59 (297)
+||-|-.|+. ++..+.+.+|++.|++++... ..++.++.+++..+ + + . ...
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYN 279 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCC
Confidence 5666665553 445577789999998876544 34799999988753 1 1 0 123
Q ss_pred ccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 60 IDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 60 fD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
||+|+.--.-..+ ...+++.+.+ |++.+||.-
T Consensus 280 ~d~v~lDPPR~G~-~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 280 CSTIFVDPPRAGL-DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred CCEEEECCCCCCC-cHHHHHHHHc---CCcEEEEEc
Confidence 7998886542222 2455555544 788888764
No 277
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.13 E-value=71 Score=30.32 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|..+..+|+|||++.|..+.
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC
Confidence 467889999999999999888764
No 278
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=25.04 E-value=2.4e+02 Score=26.44 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=33.2
Q ss_pred eEEEEccCCCCC------CCCCccc-----EEEeccccCCCC----hHHHHHHHHhcccCCcEEEEEecCC
Q 022411 43 IITQASSLSQLP------VESFSID-----TVLSISSSHELP----GDQLLEEISRVLKPGGTILIYKKLT 98 (297)
Q Consensus 43 v~~~~~d~~~Lp------~~d~sfD-----~Vls~~~~~~~~----~~~~L~ei~RvLKPGG~l~i~~~~~ 98 (297)
..++.+|+.... --.+.+| .|+....+|+++ +..++..+...|.||.+|.|+....
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 778888875431 1123344 255556688875 4789999999999999999987654
No 279
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=24.33 E-value=27 Score=31.52 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=6.1
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
+++||+|
T Consensus 23 Qg~CGsC 29 (243)
T cd02621 23 QGGCGSC 29 (243)
T ss_pred CCcCccH
Confidence 5789999
No 280
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=23.63 E-value=1.3e+02 Score=29.03 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCeEEEEccCCCC--CCCCCcccEEEeccccCCCC-----hHHHHHHHHhcccCCcEEEEEe
Q 022411 40 DPQIITQASSLSQL--PVESFSIDTVLSISSSHELP-----GDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 40 ~~~v~~~~~d~~~L--p~~d~sfD~Vls~~~~~~~~-----~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
+++|....||...+ .+..+.||+|+.-..-...+ ....++-+.+.||++|++....
T Consensus 174 ~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 174 GKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 67888888877543 24478999999765433333 2567788999999999998764
No 281
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=23.41 E-value=61 Score=31.21 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=24.6
Q ss_pred ccccCCCCCCCCC------CCCCCCCCCCCceEeecCCc
Q 022411 241 TWRCFPLRYMPLQ------GSASIQTGREGVTVKQLPRS 273 (297)
Q Consensus 241 AFRC~~CPYlGlP------aF~~~~~~~~~~~~~~~~~~ 273 (297)
.|||.-|--|--| ++++-+++.|+...+-+.+.
T Consensus 242 ~F~C~~Cn~LN~~~k~~e~s~~~~~~a~ps~s~k~~~~~ 280 (328)
T KOG2846|consen 242 TFRCPHCNALNPAKKSPENSLEAPQPAPPSSSSKPKTSN 280 (328)
T ss_pred EEECccccccCCCcCCcccccccCCCCCcccccCCCCCC
Confidence 8999999888655 45567788888777765543
No 282
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=23.30 E-value=43 Score=23.57 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=7.1
Q ss_pred ccccCCCCCC
Q 022411 241 TWRCFPLRYM 250 (297)
Q Consensus 241 AFRC~~CPYl 250 (297)
.|||..|=++
T Consensus 44 ~y~C~~Cg~~ 53 (54)
T PF10058_consen 44 QYRCPYCGAL 53 (54)
T ss_pred EEEcCCCCCc
Confidence 4888888653
No 283
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=22.97 E-value=59 Score=31.10 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred hHHHHHHHHhcccCCcEEEEEecC
Q 022411 74 GDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 74 ~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...+|..+..+|+|||+++|..+.
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCcEEEEEEec
Confidence 468899999999999999988763
No 284
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=68 Score=27.82 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccC
Q 022411 21 VSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSH 70 (297)
Q Consensus 21 ~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~ 70 (297)
.-|+-++.+++.+++++....++.++++++..+-+....||.++.+..+.
T Consensus 76 GfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 76 GFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred eeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 34666788899888887777788999999998888889999999886543
No 285
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=22.85 E-value=83 Score=26.84 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 57 SFSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 57 d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
...||.|+..+.-..-...-.|..+...|++||.++|.--.
T Consensus 67 ~~~~D~vvly~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEn 107 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKAEAQYLLANLLSHLPPGTEIFVVGEN 107 (155)
T ss_dssp HTT-SEEEEE--SSHHHHHHHHHHHHTTS-TT-EEEEEEEG
T ss_pred ccCCCEEEEEccCcHHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 35699999876422212356788999999999999987543
No 286
>PTZ00203 cathepsin L protease; Provisional
Probab=22.71 E-value=31 Score=33.36 Aligned_cols=7 Identities=57% Similarity=1.009 Sum_probs=6.2
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
++.||||
T Consensus 144 Qg~CGSC 150 (348)
T PTZ00203 144 QGACGSC 150 (348)
T ss_pred cCCCccH
Confidence 5789999
No 287
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=22.59 E-value=34 Score=29.62 Aligned_cols=7 Identities=43% Similarity=0.947 Sum_probs=6.1
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
+++||+|
T Consensus 18 Qg~cgsC 24 (210)
T cd02248 18 QGSCGSC 24 (210)
T ss_pred CCCCcch
Confidence 6789999
No 288
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=22.58 E-value=29 Score=31.27 Aligned_cols=7 Identities=43% Similarity=0.880 Sum_probs=6.0
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
++.||+|
T Consensus 22 Qg~CGsC 28 (236)
T cd02620 22 QGNCGSC 28 (236)
T ss_pred cccchhH
Confidence 5789999
No 289
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.42 E-value=46 Score=23.01 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.4
Q ss_pred ccccCCCCC
Q 022411 241 TWRCFPLRY 249 (297)
Q Consensus 241 AFRC~~CPY 249 (297)
.|+|..|+|
T Consensus 37 r~~C~~Cgy 45 (50)
T PRK00432 37 RWHCGKCGY 45 (50)
T ss_pred cEECCCcCC
Confidence 456666665
No 290
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.92 E-value=37 Score=30.11 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=10.5
Q ss_pred CCCCCCcc----ccccCC
Q 022411 233 PQSACGMW----TWRCFP 246 (297)
Q Consensus 233 ~~ssCGnC----AFRC~~ 246 (297)
+--.|.+| ||+|||
T Consensus 16 ~~k~C~~Cg~kr~f~cSg 33 (203)
T COG4332 16 PAKRCNSCGVKRAFTCSG 33 (203)
T ss_pred hhhhCcccCCcceeeecC
Confidence 44568888 888886
No 291
>PTZ00200 cysteine proteinase; Provisional
Probab=21.89 E-value=32 Score=34.58 Aligned_cols=7 Identities=43% Similarity=0.880 Sum_probs=6.2
Q ss_pred CC-CCCcc
Q 022411 234 QS-ACGMW 240 (297)
Q Consensus 234 ~s-sCGnC 240 (297)
++ +||+|
T Consensus 252 QG~~CGSC 259 (448)
T PTZ00200 252 QGLNCGSC 259 (448)
T ss_pred CCCccchH
Confidence 57 89999
No 292
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=2.1e+02 Score=29.13 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEeecCCc--cChHHHHHHHHHHHHHHhh---hcC----CCeEEEEccCCCCCCCCCc-ccEEEeccccCCCC-h----H
Q 022411 11 LALSEDKI--LPVSAVLNAIRDLGDEAVE---QCD----PQIITQASSLSQLPVESFS-IDTVLSISSSHELP-G----D 75 (297)
Q Consensus 11 Lll~~~~~--vt~~dlse~m~~~A~~~~~---~~~----~~v~~~~~d~~~Lp~~d~s-fD~Vls~~~~~~~~-~----~ 75 (297)
-++|..+. ++..|.+.+|...+..... +.. .++.+.. ..+|.+... ||+|++.+.++++. . .
T Consensus 219 ~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~ 295 (491)
T KOG2539|consen 219 VLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYDLVICAHKLHELGSKFSRLD 295 (491)
T ss_pred hhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccceeeEEeeeeeeccCCchhhhh
Confidence 34566532 3355666666666543221 111 1111111 234544444 99999998888765 2 3
Q ss_pred HHHHHHHhcccCCcEEEEEecCCC
Q 022411 76 QLLEEISRVLKPGGTILIYKKLTS 99 (297)
Q Consensus 76 ~~L~ei~RvLKPGG~l~i~~~~~~ 99 (297)
..-....+..++||.+++.+.+..
T Consensus 296 v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 296 VPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred hhHHHHHhccCCCceEEEEecCCc
Confidence 344557788999999999987754
No 293
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=21.24 E-value=47 Score=22.11 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=7.1
Q ss_pred CCCCCCCCCCC
Q 022411 245 FPLRYMPLQGS 255 (297)
Q Consensus 245 ~~CPYlGlPaF 255 (297)
..|||=|-|.+
T Consensus 22 ~~Cp~CG~~~~ 32 (46)
T PRK00398 22 VRCPYCGYRIL 32 (46)
T ss_pred eECCCCCCeEE
Confidence 44566687776
No 294
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=21.14 E-value=5.6e+02 Score=22.33 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=24.1
Q ss_pred CcccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEe
Q 022411 58 FSIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYK 95 (297)
Q Consensus 58 ~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~ 95 (297)
..||+|+.+............+.|.+.++.||-|+..-
T Consensus 51 ~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 51 KGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp CT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred cCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 58999998876532123556778888888888887554
No 295
>PTZ00021 falcipain-2; Provisional
Probab=20.98 E-value=33 Score=34.86 Aligned_cols=7 Identities=43% Similarity=0.866 Sum_probs=6.3
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
+++||+|
T Consensus 284 QG~CGSC 290 (489)
T PTZ00021 284 QKNCGSC 290 (489)
T ss_pred ccccccH
Confidence 5889999
No 296
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.83 E-value=1.6e+02 Score=22.73 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=43.2
Q ss_pred eEEEeecCCccChHHHHHHHHHHHHHHhhhcCCCeEEEEccCCCCCCCCCcccEEEeccccCCCChHHHHHHHHhcccCC
Q 022411 9 AVLALSEDKILPVSAVLNAIRDLGDEAVEQCDPQIITQASSLSQLPVESFSIDTVLSISSSHELPGDQLLEEISRVLKPG 88 (297)
Q Consensus 9 ~VLll~~~~~vt~~dlse~m~~~A~~~~~~~~~~v~~~~~d~~~Lp~~d~sfD~Vls~~~~~~~~~~~~L~ei~RvLKPG 88 (297)
+||++......|. -+.+.|.+.+++ .+..+++...++.++.-....||+|+...-+ ...+.++.+.+.+.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~----~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-----~~~~~~i~~~~~~~ 70 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK----RGIDAEIEAVPESELEEYIDDADVVLLGPQV-----RYMLDEVKKKAAEY 70 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH----CCCceEEEEecHHHHHHhcCCCCEEEEChhH-----HHHHHHHHHHhccC
Confidence 4788877666554 255566665543 3334666666665553234568998876422 23456666654444
Q ss_pred cE-EEEEe
Q 022411 89 GT-ILIYK 95 (297)
Q Consensus 89 G~-l~i~~ 95 (297)
+. +.+.+
T Consensus 71 ~~pv~~I~ 78 (96)
T cd05564 71 GIPVAVID 78 (96)
T ss_pred CCcEEEcC
Confidence 44 44433
No 297
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=20.62 E-value=34 Score=29.32 Aligned_cols=7 Identities=43% Similarity=0.885 Sum_probs=6.2
Q ss_pred CCCCCcc
Q 022411 234 QSACGMW 240 (297)
Q Consensus 234 ~ssCGnC 240 (297)
+++||+|
T Consensus 19 Qg~CGsC 25 (174)
T smart00645 19 QGQCGSC 25 (174)
T ss_pred CcccchH
Confidence 5789999
No 298
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=20.61 E-value=49 Score=32.09 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.6
Q ss_pred cccEEEeccccCCCChHHHHHHHHhcccCCcEEEEEecC
Q 022411 59 SIDTVLSISSSHELPGDQLLEEISRVLKPGGTILIYKKL 97 (297)
Q Consensus 59 sfD~Vls~~~~~~~~~~~~L~ei~RvLKPGG~l~i~~~~ 97 (297)
.||+|+.... ...+....+.||+||++++.-..
T Consensus 229 ~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC------hhhHHHHHHHHhcCCEEEEECCC
Confidence 3999998764 34688999999999999887544
No 299
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=20.16 E-value=29 Score=25.21 Aligned_cols=9 Identities=67% Similarity=1.660 Sum_probs=8.0
Q ss_pred ccCC-CCCcc
Q 022411 203 RKAC-KNCIC 211 (297)
Q Consensus 203 rkAC-knCtC 211 (297)
|++| +||+|
T Consensus 38 ~~~Cl~nCsC 47 (84)
T cd01098 38 REACLSNCSC 47 (84)
T ss_pred HHHHhcCCCc
Confidence 6888 89999
Done!