Query 022412
Match_columns 297
No_of_seqs 37 out of 39
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 05:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022412.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022412hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ig4a_ d.10.1.3 (A:) Methylat 99.4 1.3E-13 9.4E-18 103.4 6.3 64 12-78 4-69 (75)
2 d1qk9a_ d.10.1.3 (A:) Methyl-C 99.0 2E-10 1.5E-14 88.3 5.6 67 9-75 14-83 (92)
3 d2ckca1 d.76.2.1 (A:2563-2622) 69.8 1.2 8.6E-05 31.2 2.3 21 45-65 19-39 (60)
4 d2ckaa1 d.76.2.1 (A:2028-2085) 65.7 1.6 0.00012 30.4 2.3 22 45-66 21-42 (58)
5 d2v0fa1 d.76.2.1 (A:2629-2715) 50.4 3 0.00022 31.0 1.6 24 45-68 31-54 (87)
6 d2dlxa1 c.47.1.24 (A:1-147) UB 44.0 7.4 0.00054 29.0 3.0 30 31-63 100-139 (147)
7 d1euea_ d.120.1.1 (A:) Cytochr 42.5 1.4 9.9E-05 31.3 -1.4 14 55-68 32-45 (86)
8 d2nrka1 d.218.1.14 (A:4-170) H 39.0 9.9 0.00072 29.4 3.1 42 22-63 81-122 (167)
9 d1mj4a_ d.120.1.1 (A:) Sulfite 36.4 1.2 9E-05 30.9 -2.4 13 55-67 31-43 (80)
10 d1cxya_ d.120.1.1 (A:) Cytochr 28.0 4 0.00029 28.3 -0.9 14 55-68 30-43 (81)
11 d1in1a_ c.15.1.2 (A:) DNA liga 25.6 12 0.00088 26.4 1.4 24 39-65 21-44 (88)
12 d1cyoa_ d.120.1.1 (A:) Cytochr 25.2 3 0.00022 29.5 -2.1 14 55-68 32-45 (88)
13 d1jmqa_ b.72.1.1 (A:) Yap65 ww 24.6 15 0.0011 23.7 1.6 16 13-28 4-19 (46)
14 d2qalf1 d.58.14.1 (F:1-100) Ri 23.5 36 0.0026 23.7 3.7 41 35-76 2-45 (100)
15 d2fwha1 c.47.1.1 (A:428-544) T 22.4 31 0.0023 23.1 3.0 28 31-61 81-116 (117)
16 d1zjca1 e.60.1.1 (A:3-415) Ami 22.3 12 0.00089 32.7 1.0 35 52-86 299-334 (413)
17 d1fm4a_ d.129.3.1 (A:) Major t 20.8 19 0.0014 27.5 1.7 13 52-64 144-156 (159)
18 d1e09a_ d.129.3.1 (A:) Major t 20.7 19 0.0014 27.6 1.7 14 51-64 143-156 (159)
19 d3en8a1 d.17.4.20 (A:1-127) Un 20.1 38 0.0028 23.4 3.2 29 38-66 32-61 (127)
No 1
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.41 E-value=1.3e-13 Score=103.44 Aligned_cols=64 Identities=33% Similarity=0.556 Sum_probs=57.3
Q ss_pred eeeeccC-CCCCccccccCCCCCC-CcceEEEecCCchhhcchHHHHHHHHhCCCCCCccccccCCCCC
Q 022412 12 VSFELPA-PFGWKKKIVPRKGGTP-KKSEIVFTAPTGEEISNKKQLEQYLKAHPGGPASSEFDWGTGET 78 (297)
Q Consensus 12 vs~eLPA-P~GWkKk~~pkkgGTP-kK~eIvFvAPtGEEI~~krqLe~YLKahpGgp~~seFdWgTgeT 78 (297)
.++++|+ |.||++.++.++.|+. .+.+|.|++|+|..|+|+.+|.+|| ++++.++.|||+||..
T Consensus 4 ~~~~~p~LP~GW~re~~~Rk~g~~~gk~DvyY~sP~Gkk~RS~~ev~~yL---~~~l~~~~FdF~tg~~ 69 (75)
T d1ig4a_ 4 DWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYL---GPACDLTLFDFKQGIL 69 (75)
T ss_dssp CEEECTTTCTTCEEEEECCCSSSSTTCCEEEEECSSSCEECSHHHHHHHH---CSSSCCTTBCTTTCCB
T ss_pred ccccCCCCCCCcEEEEEEEcCCCCCCceeEEEECCCCCEEeCHHHHHHHh---ccCCCccceeccCCcE
Confidence 5678897 8999999999998854 4889999999999999999999999 4679999999999864
No 2
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.99 E-value=2e-10 Score=88.27 Aligned_cols=67 Identities=24% Similarity=0.545 Sum_probs=58.2
Q ss_pred cceeeeeccC-CCCCccccccCCCC-CCCcceEEEecCCchhhcchHHHHHHHHhCCC-CCCccccccCC
Q 022412 9 EEQVSFELPA-PFGWKKKIVPRKGG-TPKKSEIVFTAPTGEEISNKKQLEQYLKAHPG-GPASSEFDWGT 75 (297)
Q Consensus 9 ee~vs~eLPA-P~GWkKk~~pkkgG-TPkK~eIvFvAPtGEEI~~krqLe~YLKahpG-gp~~seFdWgT 75 (297)
+..+.++.|. |.||++.+..++.| +..+.+|.|++|+|..++|+.+|.+||..|++ +..+..||+..
T Consensus 14 ~~~~~~~dp~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP~Gkk~RS~~eV~~yL~~~~~~~~~~~~FdF~~ 83 (92)
T d1qk9a_ 14 DRGPMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTV 83 (92)
T ss_dssp CSSCCSSBCCSSSSCEEEECCCCCSSSCSCCCEEEEETTTEEESSHHHHHHHHHHHTCCSSCGGGCCCCT
T ss_pred ccCccccCCCCCCCCEEEEEEecCCCCCceeeEEEECCCCCeeecHHHHHHHHHHCCCcccchhHeeeEe
Confidence 3445677786 89999999998887 46699999999999999999999999999985 58889999975
No 3
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.84 E-value=1.2 Score=31.24 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=18.3
Q ss_pred CchhhcchHHHHHHHHhCCCC
Q 022412 45 TGEEISNKKQLEQYLKAHPGG 65 (297)
Q Consensus 45 tGEEI~~krqLe~YLKahpGg 65 (297)
+|+.--..++|.+||+.|||-
T Consensus 19 ~G~~AP~~~~L~~WL~~hP~y 39 (60)
T d2ckca1 19 VGEDAPKNKDLVEWLKLHPTY 39 (60)
T ss_dssp CTTSSCBHHHHHHHHHHCTTE
T ss_pred cCcCCcCHHHHHHHHHHCCCc
Confidence 577778899999999999973
No 4
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.66 E-value=1.6 Score=30.37 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.4
Q ss_pred CchhhcchHHHHHHHHhCCCCC
Q 022412 45 TGEEISNKKQLEQYLKAHPGGP 66 (297)
Q Consensus 45 tGEEI~~krqLe~YLKahpGgp 66 (297)
+|..--..++|.+||+.|||--
T Consensus 21 ~G~~AP~~~~L~~WL~~nP~y~ 42 (58)
T d2ckaa1 21 VGEDAPRRAELEMWLQGHPEFA 42 (58)
T ss_dssp CTTSSCBHHHHHHHHHHCTTEE
T ss_pred cccCCcCHHHHHHHHHHCCCCE
Confidence 4677778999999999999753
No 5
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.41 E-value=3 Score=31.02 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=19.7
Q ss_pred CchhhcchHHHHHHHHhCCCCCCc
Q 022412 45 TGEEISNKKQLEQYLKAHPGGPAS 68 (297)
Q Consensus 45 tGEEI~~krqLe~YLKahpGgp~~ 68 (297)
+|..--..++|.+||..||+--..
T Consensus 31 ~G~~AP~~~~L~~WL~~nP~y~V~ 54 (87)
T d2v0fa1 31 GGAMAPPMKDLPRWLEENPEFAVA 54 (87)
T ss_dssp CSSSSCBGGGHHHHHHHCTTEEEC
T ss_pred ccccCccHHHHHHHHHHCCCceeC
Confidence 466777899999999999976554
No 6
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.00 E-value=7.4 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=22.3
Q ss_pred CCCCCcceEEEecC-Cchhhcc---------hHHHHHHHHhCC
Q 022412 31 GGTPKKSEIVFTAP-TGEEISN---------KKQLEQYLKAHP 63 (297)
Q Consensus 31 gGTPkK~eIvFvAP-tGEEI~~---------krqLe~YLKahp 63 (297)
.|.| -|+||.| +||.|+. ..+|.+||..|+
T Consensus 100 ~~~P---ti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl~~~~ 139 (147)
T d2dlxa1 100 GDFP---YVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHG 139 (147)
T ss_dssp CSSS---EEEEECTTTCCCCEEESSCCHHHHHHHHHHHHHHTC
T ss_pred Ccee---EEEEEeCCCCeEecccCCCCHHHHHHHHHHHHhhCC
Confidence 3666 4899998 6887643 356899999993
No 7
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.46 E-value=1.4 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=11.2
Q ss_pred HHHHHHhCCCCCCc
Q 022412 55 LEQYLKAHPGGPAS 68 (297)
Q Consensus 55 Le~YLKahpGgp~~ 68 (297)
|..||+.||||+.+
T Consensus 32 vT~f~~~HPGG~~~ 45 (86)
T d1euea_ 32 ITRFLSEHPGGEEI 45 (86)
T ss_dssp CGGGGGGCTTCSHH
T ss_pred cceeeeccCcchHH
Confidence 56799999999743
No 8
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=38.99 E-value=9.9 Score=29.39 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=27.0
Q ss_pred CccccccCCCCCCCcceEEEecCCchhhcchHHHHHHHHhCC
Q 022412 22 WKKKIVPRKGGTPKKSEIVFTAPTGEEISNKKQLEQYLKAHP 63 (297)
Q Consensus 22 WkKk~~pkkgGTPkK~eIvFvAPtGEEI~~krqLe~YLKahp 63 (297)
|.+.||-+..+...-.-.+++.+++.++...-.+-.||.+||
T Consensus 81 ~~r~~~~~~~~~~~~~lh~~~~~~~~~~~~~L~FRD~Lr~~p 122 (167)
T d2nrka1 81 SGRRYLRKGPIKRTHHVHIYQFDNTQEILRHLAFRNYLRENP 122 (167)
T ss_dssp TTEEEEEECSSSCCEEEEEEETTCHHHHHHHHHHHHHHHHCH
T ss_pred CccEEEEcCCCcceeEEEEEEcCCcHHHHHHHHHHHHHcCCH
Confidence 445555544333333333344566788988888999999998
No 9
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.35 E-value=1.2 Score=30.85 Aligned_cols=13 Identities=38% Similarity=1.155 Sum_probs=10.7
Q ss_pred HHHHHHhCCCCCC
Q 022412 55 LEQYLKAHPGGPA 67 (297)
Q Consensus 55 Le~YLKahpGgp~ 67 (297)
|..||+.||||+.
T Consensus 31 vT~f~~~HPGG~~ 43 (80)
T d1mj4a_ 31 VTEFVDLHPGGPS 43 (80)
T ss_dssp CTTTGGGSTTCHH
T ss_pred eeeeHhhcCChhH
Confidence 4569999999974
No 10
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=27.99 E-value=4 Score=28.26 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=10.8
Q ss_pred HHHHHHhCCCCCCc
Q 022412 55 LEQYLKAHPGGPAS 68 (297)
Q Consensus 55 Le~YLKahpGgp~~ 68 (297)
|..||..||||..+
T Consensus 30 vT~f~~~HPGG~~~ 43 (81)
T d1cxya_ 30 LTPYVPNHPGPAGM 43 (81)
T ss_dssp CTTTGGGCCSSTTT
T ss_pred ccceeecCCCcHHH
Confidence 34599999999743
No 11
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.61 E-value=12 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=18.0
Q ss_pred EEEecCCchhhcchHHHHHHHHhCCCC
Q 022412 39 IVFTAPTGEEISNKKQLEQYLKAHPGG 65 (297)
Q Consensus 39 IvFvAPtGEEI~~krqLe~YLKahpGg 65 (297)
.+|| +| .+.+++.|.+|+-+|-|.
T Consensus 21 ~~~i--~~-~~p~~~~L~r~i~a~GG~ 44 (88)
T d1in1a_ 21 RLYL--PP-STPDFSRLRRYFVAFDGD 44 (88)
T ss_dssp BCCC--CT-TSTTHHHHHHHHHHHTCB
T ss_pred EEEE--CC-CCCCHHHHHHHHHHhCCE
Confidence 4555 34 668899999999999443
No 12
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.15 E-value=3 Score=29.51 Aligned_cols=14 Identities=43% Similarity=0.975 Sum_probs=11.0
Q ss_pred HHHHHHhCCCCCCc
Q 022412 55 LEQYLKAHPGGPAS 68 (297)
Q Consensus 55 Le~YLKahpGgp~~ 68 (297)
|..||..||||..+
T Consensus 32 vT~f~~~HPGG~~~ 45 (88)
T d1cyoa_ 32 LTKFLEEHPGGEEV 45 (88)
T ss_dssp CTTTTTTCTTCSHH
T ss_pred cchhhcccCCchHH
Confidence 45699999999754
No 13
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.61 E-value=15 Score=23.70 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.1
Q ss_pred eeeccCCCCCcccccc
Q 022412 13 SFELPAPFGWKKKIVP 28 (297)
Q Consensus 13 s~eLPAP~GWkKk~~p 28 (297)
+-++|-|+||...+.+
T Consensus 4 ~~~~~LP~GWe~~~d~ 19 (46)
T d1jmqa_ 4 PDDVPLPAGWEMAKTS 19 (46)
T ss_dssp CSSCCCCTTBCCBCCS
T ss_pred CccCCCCCCceEEECC
Confidence 4467899999998875
No 14
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]}
Probab=23.49 E-value=36 Score=23.69 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=28.3
Q ss_pred CcceEEEecC-Cchh-hc-chHHHHHHHHhCCCCCCccccccCCC
Q 022412 35 KKSEIVFTAP-TGEE-IS-NKKQLEQYLKAHPGGPASSEFDWGTG 76 (297)
Q Consensus 35 kK~eIvFvAP-tGEE-I~-~krqLe~YLKahpGgp~~seFdWgTg 76 (297)
+++|++||.. +-.+ +. -..++...|..| ||-.+...+||.-
T Consensus 2 ~~YE~~~Il~p~~~e~~~~~~~~~~~~i~~~-gg~v~~~~~~G~r 45 (100)
T d2qalf1 2 RHYEIVFMVHPDQSEQVPGMIERYTAAITGA-EGKIHRLEDWGRR 45 (100)
T ss_dssp CEECEEEEECGGGTTHHHHHHHHHHHHHHHT-TCCCCCCCCCBSC
T ss_pred CcceEEEEECCCcHHHHHHHHHHHHHHHHhC-CCEEEEEeeeeee
Confidence 4678888874 4332 22 234566788889 8888899999963
No 15
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}
Probab=22.44 E-value=31 Score=23.09 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCCCCcceEEEecCCchhhc--------chHHHHHHHHh
Q 022412 31 GGTPKKSEIVFTAPTGEEIS--------NKKQLEQYLKA 61 (297)
Q Consensus 31 gGTPkK~eIvFvAPtGEEI~--------~krqLe~YLKa 61 (297)
.|+|. ++|+.|+|+.|. +..+|..+|+.
T Consensus 81 ~~~Pt---~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 81 LGLPT---ILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp CSSSE---EEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred hhceE---EEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 47885 899999998874 45677777763
No 16
>d1zjca1 e.60.1.1 (A:3-415) Aminopeptidase S, AMPS {Staphylococcus aureus [TaxId: 1280]}
Probab=22.33 E-value=12 Score=32.70 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=29.4
Q ss_pred hHHHHHHHHhCCCCCCccccccCCCCCC-cchhhhh
Q 022412 52 KKQLEQYLKAHPGGPASSEFDWGTGETP-RRSARIS 86 (297)
Q Consensus 52 krqLe~YLKahpGgp~~seFdWgTgeTP-RRSaRis 86 (297)
.+.|.+||..+||.--+.||-+|+...| .++.||.
T Consensus 299 ~~~l~~~l~~d~~a~~~gE~~ig~n~~~~~~~~~~~ 334 (413)
T d1zjca1 299 EAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIF 334 (413)
T ss_dssp HHHHHHHHTSSGGGGSEEEEEECCSSSTTGGGCCCC
T ss_pred HHHHHHhhccCcccceEeEEeeccCCcccccccccc
Confidence 4668999999999999999999999887 4566653
No 17
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
Probab=20.80 E-value=19 Score=27.52 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.1
Q ss_pred hHHHHHHHHhCCC
Q 022412 52 KKQLEQYLKAHPG 64 (297)
Q Consensus 52 krqLe~YLKahpG 64 (297)
-+.|+.||-|||-
T Consensus 144 ~K~iE~YLlanp~ 156 (159)
T d1fm4a_ 144 LRAVESYLLAHSD 156 (159)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhhChh
Confidence 3788999999994
No 18
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}
Probab=20.69 E-value=19 Score=27.57 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=11.5
Q ss_pred chHHHHHHHHhCCC
Q 022412 51 NKKQLEQYLKAHPG 64 (297)
Q Consensus 51 ~krqLe~YLKahpG 64 (297)
--+.|+.||.|||.
T Consensus 143 ~~K~iEayLlanp~ 156 (159)
T d1e09a_ 143 LFKLIETYLKGHPD 156 (159)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhChh
Confidence 34788999999994
No 19
>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}
Probab=20.09 E-value=38 Score=23.37 Aligned_cols=29 Identities=31% Similarity=0.619 Sum_probs=24.1
Q ss_pred eEEEecCC-chhhcchHHHHHHHHhCCCCC
Q 022412 38 EIVFTAPT-GEEISNKKQLEQYLKAHPGGP 66 (297)
Q Consensus 38 eIvFvAPt-GEEI~~krqLe~YLKahpGgp 66 (297)
+++|..|. |+-+..+..|..||...|+..
T Consensus 32 D~v~~~p~~~~~~~G~e~i~~~~~~~~~~~ 61 (127)
T d3en8a1 32 DAICDYPQSGERILGRMNLQALRSHHPGKP 61 (127)
T ss_dssp EEEEEETTTTEEEESHHHHHHHHHHTTCSC
T ss_pred CEEEEcCCcccccchHHHHHHHHHHHhccC
Confidence 68888774 677888999999999999764
Done!