RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022416
(297 letters)
>gnl|CDD|178224 PLN02615, PLN02615, arginase.
Length = 338
Score = 513 bits (1322), Expect = 0.0
Identities = 225/249 (90%), Positives = 242/249 (97%)
Query: 5 IGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSL 64
IG+RG+HYLQ+L +A++P +++EKGQNRVIDASLTLIRERAKLKGELVRALGGA AS+ L
Sbjct: 4 IGRRGIHYLQRLIAASVPASLLEKGQNRVIDASLTLIRERAKLKGELVRALGGAKASSCL 63
Query: 65 LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD 124
LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD
Sbjct: 64 LGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRD 123
Query: 125 CGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAH 184
CGVDDDRLMNVI+ESVKLVMEE+PL PLVLGGDHSIS+PV+RAVSEKLGGPVD+LHLDAH
Sbjct: 124 CGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYPVVRAVSEKLGGPVDILHLDAH 183
Query: 185 PDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS 244
PDIY AFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS
Sbjct: 184 PDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFS 243
Query: 245 RDRQFLENL 253
+DR+ LENL
Sbjct: 244 KDREKLENL 252
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins. This
family includes known and predicted bacterial and
archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB;
EC=3.5.3.11), a binuclear manganese metalloenzyme that
belongs to the ureohydrolase superfamily. It is a key
enzyme in the synthesis of polyamine putrescine; it
catalyzes hydrolysis of agmatine to yield urea and
putrescine, the precursor for biosynthesis of higher
polyamines, spermidine, and spermine. As compared to E.
coli where two paths to putrescine exist, via
decarboxylation of an amino acid, ornithine or arginine,
a single path is found in Bacillus subtilis, where
polyamine synthesis starts with agmatine; the speE and
speB encode spermidine synthase and agmatinase,
respectively. The level of agmatinase synthesis is very
low, allowing strict control on the synthesis of
putrescine and therefore, of all polyamines, consistent
with polyamine levels in the cell. This subfamily
belongs to the ureohydrolase superfamily, which includes
arginase, agmatinase, proclavaminate amidinohydrolase,
and formiminoglutamase.
Length = 263
Score = 195 bits (498), Expect = 2e-61
Identities = 72/188 (38%), Positives = 104/188 (55%), Gaps = 9/188 (4%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
+LGVP S+ G F P IREA + S + ++L D D+GD+ +
Sbjct: 3 ILGVPYDGTVSYRPGTRFGPAAIREASYQLELYSPYLD-RDLEDIPF-YDLGDLTLPPG- 59
Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
D ++++ I E+VK ++++ P+VLGG+HSI+ +RA++EK + VLH DA
Sbjct: 60 ----DPEKVLERIEEAVKELLDDGKF-PIVLGGEHSITLGAVRALAEKYP-DLGVLHFDA 113
Query: 184 HPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTF 243
H D+ D +EG+KYSHA RI+E G +RL+QVGIRS +KE E K GV Y F
Sbjct: 114 HADLRDEYEGSKYSHACVMRRILELGGVKRLVQVGIRSGSKEEFEFAKEKGVRIYTFDDF 173
Query: 244 SRDRQFLE 251
R E
Sbjct: 174 DLGRWLDE 181
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 162 bits (412), Expect = 2e-48
Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
+LGVP S+ G F P IREA ST S + G + D + D GDVPV
Sbjct: 3 VLGVPFDGGSTSRPGARFGPRAIREASAGYSTYSP-DLGVDDFDDLTVVDYGDVPVDP-- 59
Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
D ++ + I E+V + E P+VLGGDHSI++P +R ++E+ G V V+H DA
Sbjct: 60 ---GDIEKTFDRIREAVAEIAEAG-AIPIVLGGDHSITYPAVRGLAERHKGKVGVIHFDA 115
Query: 184 HPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSI--TKEGREQGKRFGVEQYE 239
H D D G + SH + F R++E G ++Q+GIR + E E + GV
Sbjct: 116 HLDTRDTDGGGELSHGTPFRRLLEDGNVDGENIVQIGIRGFWNSPEYVEYAREQGVTVIT 175
Query: 240 MRTFSRD 246
MR
Sbjct: 176 MRDVRER 182
>gnl|CDD|215946 pfam00491, Arginase, Arginase family.
Length = 268
Score = 158 bits (403), Expect = 3e-47
Identities = 68/188 (36%), Positives = 97/188 (51%), Gaps = 13/188 (6%)
Query: 60 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPV 119
A +++GVP +S G F P IREA S N E EL+ + D+GDV V
Sbjct: 1 ADVAIIGVPFDGGTSGRPGARFGPDAIREA----SANLELYELYELSLGLKVVDLGDVAV 56
Query: 120 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 179
D + ++ I E+V ++ PLVLGGDHSI+ +RA++ G P+ V+
Sbjct: 57 ------PPDPEDVLERIEEAVAAILAAGKF-PLVLGGDHSITLGALRALARAYGPPLGVI 109
Query: 180 HLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQ 237
H DAH D+ D + G+ YSH + F R +E G R++Q+GIRS+ E E K GV
Sbjct: 110 HFDAHADLRDPYTGSGYSHGTPFRRALEEGLLDPERVVQIGIRSVDNEEYEYAKELGVRV 169
Query: 238 YEMRTFSR 245
+ MR
Sbjct: 170 FTMRDIDE 177
>gnl|CDD|223089 COG0010, SpeB, Arginase/agmatinase/formimionoglutamate hydrolase,
arginase family [Amino acid transport and metabolism].
Length = 305
Score = 113 bits (285), Expect = 2e-29
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 122
+++GVP +S+ G F P IREA + +L + + D+GD+ +
Sbjct: 25 AIIGVPFDGGTSYRPGARFGPDAIREASL--NLEYNVPLDGDLVEALKIADLGDIELN-- 80
Query: 123 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 182
G D + ++ I E+V ++ P+VLGGDHSI+ +RA++ K GGP+ V+ +D
Sbjct: 81 ---GGDLEDAVDAIEEAVAELLSAGAF-PIVLGGDHSITLGTVRALARKYGGPLGVIWID 136
Query: 183 AHPDIYDAFEGNKYSHASSFARIMEGGY----ARRLLQVGIRSITK-EGREQGKRFGVEQ 237
AH D+ + G+ SH + R +E G ++Q+GIRS+ E + G+
Sbjct: 137 AHADLRTPYSGSGNSHGTPLRRALEEGLIDGGPENVVQIGIRSVDPEERAAVARERGIRV 196
Query: 238 YEMRTF 243
R
Sbjct: 197 LTARDV 202
>gnl|CDD|212537 cd11589, Agmatinase_like_1, Agmatinase and related proteins. This
family includes known and predicted bacterial agmatinase
(agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a
binuclear manganese metalloenzyme, belonging to the
ureohydrolase superfamily. It is a key enzyme in the
synthesis of polyamine putrescine; it catalyzes
hydrolysis of agmatine to yield urea and putrescine, the
precursor for biosynthesis of higher polyamines,
spermidine, and spermine. Agmatinase from Deinococcus
radiodurans shows approximately 33% of sequence identity
to human mitochondrial agmatinase. An analysis of the
evolutionary relationship among ureohydrolase
superfamily enzymes indicates the pathway involving
arginine decarboxylase and agmatinase evolved earlier
than the arginase pathway of polyamine.
Length = 274
Score = 110 bits (278), Expect = 7e-29
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNST---------TEEGKELNDPRVLTDV 114
+LGVP F G FAP IREA ST L D + D
Sbjct: 3 VLGVPYDMGYPFRSGARFAPRAIREA----STRFARGIGGYDDDDGGLLFLGDGVRIVDC 58
Query: 115 GDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGG 174
GDV + D I E+V+ ++ + P+VLGGDHS++ PV+RA+ E G
Sbjct: 59 GDVDIDP-----TDPAGNFANIEEAVRKILARGAV-PVVLGGDHSVTIPVLRALDEH--G 110
Query: 175 PVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGRE 228
P+ V+ +DAH D D G +Y ++S R E + R+ Q+GIR + E
Sbjct: 111 PIHVVQIDAHLDWRDEVNGVRYGNSSPMRRASEMPHVGRITQIGIRGLGSARPE 164
>gnl|CDD|212538 cd11592, Agmatinase_PAH, Agmatinase-like family includes
proclavaminic acid amidinohydrolase. This agmatinase
subfamily contains bacterial and fungal/metazoan
enzymes, including proclavaminic acid amidinohydrolase
(PAH, EC 3.5.3.22) and Pseudomonas aeruginosa
guanidinobutyrase (GbuA) and guanidinopropionase (GpuA).
PAH hydrolyzes amidinoproclavaminate to yield
proclavaminate and urea in clavulanic acid biosynthesis.
Clavulanic acid is an effective inhibitor of
beta-lactamases and is used in combination with
amoxicillin to prevent the beta-lactam rings of the
antibiotic from hydrolysis and, thus keeping the
antibiotic biologically active. GbuA hydrolyzes
4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea
while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into
beta-alanine and urea. Mutation studies show that
significant variations in two active site loops in these
two enzymes may be important for substrate specificity.
This subfamily belongs to the ureohydrolase superfamily,
which includes arginase, agmatinase, proclavaminate
amidinohydrolase, and formiminoglutamase.
Length = 289
Score = 102 bits (256), Expect = 2e-25
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 52 VRALGGA-VASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRV 110
VR L GA VA ++GVP S+ G F P IR+A + + +V
Sbjct: 11 VRDLEGADVA---VVGVPFDTGVSYRPGARFGPRAIRQASRLLRPYNPATGVDPFDWLKV 67
Query: 111 LTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSE 170
+ D GDVPV D + + I E+ + ++ P PL LGGDHSI+ P++RA+++
Sbjct: 68 V-DCGDVPVT-----PGDIEDALEQIEEAYRAILAAGP-RPLTLGGDHSITLPILRALAK 120
Query: 171 KLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEG 226
K G PV ++H DAH D +D + G KY+H + F R +E G +R +Q+GIR + +
Sbjct: 121 KHG-PVALVHFDAHLDTWDPYFGEKYNHGTPFRRAVEEGLLDPKRSIQIGIRGSLYSPDD 179
Query: 227 REQGKRFGVEQYEMRTF 243
E + G
Sbjct: 180 LEDDRDLGFRVITADEV 196
>gnl|CDD|233323 TIGR01230, agmatinase, agmatinase. Members of this family include
known and predicted examples of agmatinase (agmatine
ureohydrolase). The seed includes members of archaea,
for which no definitive agmatinase sequence has yet been
made available. However, archaeal sequences are
phylogenetically close to the experimentally verified B.
subtilis sequence. One species of Halobacterium has been
demonstrated in vitro to produce agmatine from arginine,
but no putrescine from ornithine, suggesting that
arginine decarboxylase and agmatinase, rather than
arginase and ornithine decarboxylase, lead from Arg to
polyamine biosynthesis. Note: a history of early
misannotation of members of this family is detailed in
PUBMED:10931887.
Length = 275
Score = 96.0 bits (239), Expect = 2e-23
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
+ G+P +S+ G P IREA W E R+ D+ + V +
Sbjct: 17 IYGIPYDATTSYRPGSRHGPNAIREASW----------NLEWYSNRLDRDLAMLNVVDAG 66
Query: 124 D---CGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
D D + I E + +EE P+ +GG+HSI+ PVIRA+++K G V+H
Sbjct: 67 DLPLAFGDAREMFEKIQEHAEEFLEEGKF-PVAIGGEHSITLPVIRAMAKKFG-KFAVVH 124
Query: 181 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKE 225
DAH D+ D F+G +HA R++E G ++Q GIRS KE
Sbjct: 125 FDAHTDLRDEFDGGTLNHACPMRRVIELG--LNVVQFGIRSGFKE 167
>gnl|CDD|212511 cd09015, Ureohydrolase, Ureohydrolase superfamily includes
arginase, formiminoglutamase, agmatinase and
proclavaminate amidinohydrolase (PAH). This family,
also known as arginase-like amidino hydrolase family,
includes Mn-dependent enzymes: arginase (Arg, EC
3.5.3.1), formimidoylglutamase (HutG, EC 3.5.3.8 ),
agmatinase (SpeB, EC 3.5.3.11), guanidinobutyrase (Gbh,
EC=3.5.3.7), proclavaminate amidinohydrolase (PAH, EC
3.5.3.22) and related proteins. These enzymes catalyze
hydrolysis of amide bond. They are involved in control
of cellular levels of arginine and ornithine (both
involved in protein biosynthesis, and production of
creatine, polyamines, proline and nitric acid), in
histidine and arginine degradation, and in clavulanic
acid biosynthesis.
Length = 270
Score = 75.5 bits (186), Expect = 6e-16
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNS---TTEEGKELNDPRVLTDVGDVPV 119
+++G P G F P IR+A T GK + + D GD+ +
Sbjct: 1 AIIGFPYDAGCEGRPGAKFGPSAIRQA----LLRLALVFTGLGKTRHHHINIYDAGDIRL 56
Query: 120 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 179
E + ++L +V+ + +K P+VLGGDHSI+ +RAV+ + V+
Sbjct: 57 -EGDELEEAHEKLASVVQQVLK-----RGAFPVVLGGDHSIAIATLRAVARH-HPDLGVI 109
Query: 180 HLDAHPDIYDAFEGNKYSHASSFARIME--GGYARRLLQVGIRSI--TKEGREQGKRFGV 235
+LDAH D+ + S + F +++E + ++ +G+R + E ++ GV
Sbjct: 110 NLDAHLDVNTPETDGRNSSGTPFRQLLEELQQSPKHIVCIGVRGLDPGPALFEYARKLGV 169
Query: 236 EQYEMRTFSR 245
+ M +
Sbjct: 170 KYVTMDEVDK 179
>gnl|CDD|234974 PRK01722, PRK01722, formimidoylglutamase; Provisional.
Length = 320
Score = 71.5 bits (176), Expect = 3e-14
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 52/242 (21%)
Query: 66 GVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDC 125
GVP S G +FAP IR A+ ++++ E L D+GD+ C
Sbjct: 53 GVPRNKGRS---GASFAPDAIRRALANMASHAGHER---------LYDLGDI------TC 94
Query: 126 GVDD-----DRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGP-VDVL 179
V D L + + ++ M +VLGG H I+F V++ V ++
Sbjct: 95 HVTDLEEAQQALADTVGHCLRPNMR-----TIVLGGGHEIAFGSFAGVADAFPKGKVGII 149
Query: 180 HLDAHPDIYDAFEGNKYSHASSFARIMEG----GYARRLLQVGIR--SITKEGREQGKRF 233
+ DAH D+ + E S + F +++E +G+ S T+ E+ K
Sbjct: 150 NFDAHHDLRN-LEDGGPSSGTPFRQLLEYCDAQIRGFHYACIGVSRASNTQALWEEAKEL 208
Query: 234 GVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFYLLCLTFDVFIQT 293
GV ++ L IL++LQ I + L + DV
Sbjct: 209 GVTVVTD----------LDVRERGLK----DILTELQEFIDQVDYIY--LTIDLDVLPAA 252
Query: 294 TA 295
A
Sbjct: 253 EA 254
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases.
Arginase-like/histone-like hydrolase superfamily
includes metal-dependent enzymes that belong to
Arginase-like amidino hydrolase family and
histone/histone-like deacetylase class I, II, IV family,
respectively. These enzymes catalyze hydrolysis of amide
bond. Arginases are known to be involved in control of
cellular levels of arginine and ornithine, in histidine
and arginine degradation and in clavulanic acid
biosynthesis. Deacetylases play a role in signal
transduction through histone and/or other protein
modification and can repress/activate transcription of a
number of different genes. They participate in different
cellular processes including cell cycle regulation, DNA
damage response, embryonic development, cytokine
signaling important for immune response and
post-translational control of the acetyl coenzyme A
synthetase. Mammalian histone deacetyases are known to
be involved in progression of different tumors. Specific
inhibitors of mammalian histone deacetylases are an
emerging class of promising novel anticancer drugs.
Length = 217
Score = 64.3 bits (157), Expect = 3e-12
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-G 209
P+VLGGDHSI+ IRAV+E L + V+ +DAH D+ K +H + + E
Sbjct: 28 PVVLGGDHSIANGAIRAVAE-LHPDLGVIDVDAHHDVRTPEAFGKGNHHTPRHLLCEPLI 86
Query: 210 YARRLLQVGIRSITKEG-REQGKRF-GVEQYEMRTFSR 245
++ +GIR ++ R GV + M +
Sbjct: 87 SDVHIVSIGIRGVSNGEAGGAYARKLGVVYFSMTEVDK 124
>gnl|CDD|235011 PRK02190, PRK02190, agmatinase; Provisional.
Length = 301
Score = 62.9 bits (154), Expect = 2e-11
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 150 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 209
L LGGDH I+ P++RA ++ GP+ ++H DAH D + G++ H + F + G
Sbjct: 112 RMLTLGGDHFITLPLLRAHAKHF-GPLALVHFDAHTDTWAD-GGSRIDHGTMFYHAPKEG 169
Query: 210 Y--ARRLLQVGIRSITKE 225
+Q+GIR+ +
Sbjct: 170 LIDPAHSVQIGIRTEYDK 187
>gnl|CDD|212523 cd09999, Arginase-like_1, Arginase-like amidino hydrolase family.
This family includes arginase, also known as
arginase-like amidino hydrolase family, as well as
arginase-like proteins and are found in bacteria,
archaea and eykaryotes, but does not include metazoan
arginases. Arginase is a binuclear Mn-dependent
metalloenzyme and catalyzes hydrolysis of L-arginine to
L-ornithine and urea (Arg, EC 3.5.3.1), the reaction
being the fifth and final step in the urea cycle,
providing the path for the disposal of nitrogenous
compounds. Arginase controls cellular levels of arginine
and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid.
Length = 272
Score = 54.9 bits (133), Expect = 7e-09
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 20/147 (13%)
Query: 108 PRVLTDVGDVPVQE-IRDCGVDD-----DRLMNVITESVKLVMEEDPLHPLVLGGDHSIS 161
P + +VPV + L+ + + ++ P P+VLGGD S+S
Sbjct: 30 PESADETVEVPVPPDPAPLDPETGIIGRSALLAQLRAAADIIEAALPDRPVVLGGDCSVS 89
Query: 162 FPVIRAVSEKLGGPVDVLHLDAHPDIYD-AFEGNKYSHA-----------SSFARIMEGG 209
++ K G + +L +DAHPD Y+H I++
Sbjct: 90 LAPFAYLARK-YGDLGLLWIDAHPDFNTPETSPTGYAHGMVLAALLGEGDPELTAIVKPP 148
Query: 210 -YARRLLQVGIRSITKEGREQGKRFGV 235
R++ G+R E E R G+
Sbjct: 149 LSPERVVLAGLRDPDDEEEEFIARLGI 175
>gnl|CDD|212515 cd09989, Arginase, Arginase family. This family includes arginase,
also known as arginase-like amidino hydrolase family,
and related proteins. Arginase is a binuclear
Mn-dependent metalloenzyme and catalyzes hydrolysis of
L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1),
the reaction being the fifth and final step in the urea
cycle, providing the path for the disposal of
nitrogenous compounds. Arginase controls cellular levels
of arginine and ornithine which are involved in protein
biosynthesis, and in production of creatine, polyamines,
proline and nitric acid. In vertebrates, at least two
isozymes have been identified: type I (ARG1) cytoplasmic
or hepatic liver-type arginase and type II (ARG2)
mitochondrial or non-hepatic arginase. Point mutations
in human arginase ARG1 gene lead to hyperargininemia
with consequent mental disorders, retarded development
and early death. Hyperargininemia is associated with a
several-fold increase in the activity of the
mitochondrial arginase (ARG2), causing persistent
ureagenesis in patients. ARG2 overexpression plays a
critical role in the pathophysiology of cholesterol
mediated endothelial dysfunction. Thus, arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 290
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 122
S++GVP + +G P +REA G E G ++ D +GD+ V
Sbjct: 2 SIIGVPFDLGAG-KRGVELGPEALREA---GLLERLEELGHDVED------LGDLLVPNP 51
Query: 123 RDCGVDDDRLMNV---------ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG 173
+ + N+ + E+V +EE PLVLGGDHSI+ I V+
Sbjct: 52 EEESPFNGNAKNLDEVLEANEKLAEAVAEALEEGRF-PLVLGGDHSIAIGTIAGVARAPY 110
Query: 174 GPVDVLHLDAHPDI 187
+ V+ +DAH DI
Sbjct: 111 PDLGVIWIDAHADI 124
>gnl|CDD|233322 TIGR01227, hutG, formimidoylglutamase. Formiminoglutamase, the
fourth enzyme of histidine degradation, is similar to
arginases and agmatinases. It is often encoded near
other enzymes of the histidine degredation pathway:
histidine ammonia-lyase, urocanate hydratase, and
imidazolonepropionase [Energy metabolism, Amino acids
and amines].
Length = 307
Score = 52.5 bits (126), Expect = 6e-08
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 29/192 (15%)
Query: 64 LLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
L+G PL +G P IR+A+ + + +L D+GD+
Sbjct: 39 LIGFPLDKGVIRNKGRRGARHGPSAIRQAL---------AHLGDWHVSELLYDLGDI--- 86
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLH--PLVLGGDHSISFPVIRAVSEKLGG--PV 176
DD L + E + H P++LGG HSI++ A+++ G +
Sbjct: 87 ---VIHGDD--LEDTQHEIAQTAAALLADHRVPVILGGGHSIAYATFAALAQHYKGTTAI 141
Query: 177 DVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYA--RRLLQVGIR--SITKEGREQGKR 232
V++ DAH D+ A E + + F +I++ +GIR S T+ + K+
Sbjct: 142 GVINFDAHFDL-RATEDGGPTSGTPFRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKK 200
Query: 233 FGVEQYEMRTFS 244
GV
Sbjct: 201 LGVRYVTDDALR 212
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 44.0 bits (104), Expect = 4e-05
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 136 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVS-----EKLGGPVDVLHLDAHPDI--- 187
+ V V EE PLVLGGDHSI+ I + +KLG VL LDAH DI
Sbjct: 72 LAPKVYEVFEEGRF-PLVLGGDHSIAIGTISGTARVHPDKKLG----VLWLDAHADINTP 126
Query: 188 YDAFEGNKYSHASSF--------ARIMEGGY-------ARRLLQVGIRSITKEGREQGKR 232
+ GN + +F G + L+ +G+RS+ R+ K
Sbjct: 127 ETSDSGNIHGMPLAFLLGRLKSEFPDSPGLGWVAPEISPKNLVYIGLRSVDPGERKILKE 186
Query: 233 FGVEQYEMR 241
G++ + M
Sbjct: 187 LGIKVFSMH 195
>gnl|CDD|212514 cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE.
Formimidoylglutamase (N-formimidoyl-L-glutamate
formimidoylhydrolase; formiminoglutamase;
N-formiminoglutamate hydrolase; N-formimino-L-glutamate
formiminohydrolase; HutE; EC 3.5.3.8) is a metalloenzyme
that catalyzes hydrolysis of N-formimidoyl-L-glutamate
to L-glutamate and formamide. This enzyme is involved in
histidine degradation, requiring Mn as a cofactor while
glutathione may be required for maximal activity. In
Pseudomonas PAO1, mutation studies show that histidine
degradation proceeds via a 'four-step' pathway if the
'five-step' route is absent and vice versa; in the
four-step pathway, formiminoglutaminase (HutE, EC
3.5.3.8) directly converts formiminoglutamate (FIGLU) to
L-glutamate and formamide in a single step.
Formiminoglutamase has traditionally also been referred
to as HutG; however, formiminoglutamase is structurally
and mechanistically unrelated to N-formyl-glutamate
deformylase (also called HutG). Phylogenetic analysis
has suggested that HutE was acquired by horizontal gene
transfer from a Ralstonia-like ancestor.
Length = 262
Score = 42.5 bits (101), Expect = 1e-04
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 106 NDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVI 165
N + D+GD+ G + + E V ++++ + P+V+GG H +++
Sbjct: 38 NWGLKIYDLGDIICD-----GDSLEDTQQALAEVVAELLKKG-IIPIVIGGGHDLAYGHY 91
Query: 166 RAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FARIME--GGYARRLLQVGI 219
R + + L + +++ DAH D+ S F +I+E +GI
Sbjct: 92 RGLDKALEKKIGIINFDAHFDL-----RPLEEGRHSGTPFRQILEECPNNLFNYSVLGI 145
>gnl|CDD|212536 cd11587, Arginase-like, Arginase types I and II and arginase-like
family. This family includes arginase, also known as
arginase-like amidino hydrolase family, and related
proteins, found in bacteria, archaea and eykaryotes.
Arginase is a binuclear Mn-dependent metalloenzyme and
catalyzes hydrolysis of L-arginine to L-ornithine and
urea (Arg, EC 3.5.3.1), the reaction being the fifth and
final step in the urea cycle, providing the path for the
disposal of nitrogenous compounds. Arginase controls
cellular levels of arginine and ornithine which are
involved in protein biosynthesis, and in production of
creatine, polyamines, proline and nitric acid. In
vertebrates, at least two isozymes have been identified:
type I cytoplasmic or hepatic liver-type arginase and
type II mitochondrial or non-hepatic arginase. Point
mutations in human arginase gene lead to
hyperargininemia with consequent mental disorders,
retarded development and early death. Arginase is a
therapeutic target to treat asthma, erectile
dysfunction, atherosclerosis and cancer.
Length = 294
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 187
LVLGGDHS++ I + ++ + V+ +DAH DI
Sbjct: 86 SLVLGGDHSLAIGSI-SGHAQVYPDLGVIWIDAHGDI 121
>gnl|CDD|237499 PRK13773, PRK13773, formimidoylglutamase; Provisional.
Length = 324
Score = 39.0 bits (91), Expect = 0.002
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 105 LNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLH-PLVLGGDHSISFP 163
L++PR + D G V V D +RL + ++ + D H P+VLGG H +F
Sbjct: 82 LHEPRRVYDAGTVTVPG-GDLEAGQERLGDAVSALL------DAGHLPVVLGGGHETAFG 134
Query: 164 ----VIRAVSEKLGGPVDVLHLDAHPDIYDA 190
V + + G + +L+LDAH D+ A
Sbjct: 135 SYLGVAGSERRRPGKRLGILNLDAHFDLRAA 165
>gnl|CDD|172310 PRK13772, PRK13772, formimidoylglutamase; Provisional.
Length = 314
Score = 35.1 bits (81), Expect = 0.033
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 78 GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVIT 137
G A P IR A+ G + L D GDV V + D L V+
Sbjct: 62 GAAHGPREIRRAL----------AGVPAHGLPALADAGDV-VCDDGDLESAQAALAEVVA 110
Query: 138 ESVKLVMEEDPLHPLVLGGDHSI---SFPVIRAVSEKLG--GPVDVLHLDAHPDI 187
E + PLVLGG H + ++ +RA + G G V +++LDAH D+
Sbjct: 111 EVL-----AAGARPLVLGGGHEVAWGTWQGLRAHLDAQGDRGRVLIINLDAHFDL 160
>gnl|CDD|237500 PRK13776, PRK13776, formimidoylglutamase; Provisional.
Length = 318
Score = 30.0 bits (68), Expect = 1.6
Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 42/145 (28%)
Query: 77 QGPAFAPPRIREAI----WCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDD--- 129
G P IR A+ W G R + D GDV C DD
Sbjct: 62 VGAKHGPDAIRRALANLPWHG--------------GRAVVDAGDV------VCEDDDLEA 101
Query: 130 --DRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGP-----VDVLHLD 182
R + + +++ L P+ LGG H I++ + ++ L + +++ D
Sbjct: 102 AQSRYAQRVHD----LLDRGHL-PIGLGGGHEIAWASFQGLARHLARSAPLPRIGIINFD 156
Query: 183 AHPDIYDAFEGNKYSHASSFARIME 207
AH D+ G S + F +I E
Sbjct: 157 AHFDLRKGERG---SSGTPFRQIAE 178
>gnl|CDD|221683 pfam12640, UPF0489, UPF0489 domain. This family is probably an
enzyme which is related to the Arginase family.
Length = 106
Score = 28.4 bits (64), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 162 FPVIRAVSE-KLGGPVDVLHLDAHPD 186
+ RA+ KL P ++H+DAHPD
Sbjct: 12 YAWYRALGRGKLPPPPTLVHIDAHPD 37
>gnl|CDD|172313 PRK13775, PRK13775, formimidoylglutamase; Provisional.
Length = 328
Score = 29.6 bits (66), Expect = 2.0
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Query: 113 DVGDV--PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSE 170
DVG++ P + + ++L N +++++K M + L P+VLGG H ++ + +
Sbjct: 94 DVGNIDGPNRSL-------EQLQNSLSKAIKR-MCDLNLKPIVLGGGHETAYGHYLGLRQ 145
Query: 171 KLGGPVD--VLHLDAHPDI 187
L D V+++DAH D+
Sbjct: 146 SLSPSDDLAVINMDAHFDL 164
>gnl|CDD|237427 PRK13559, PRK13559, hypothetical protein; Provisional.
Length = 361
Score = 29.4 bits (66), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 69 LGHNSSFLQGPAFAP---PRIREAI 90
+G N FLQG A P +IR AI
Sbjct: 87 VGRNCRFLQGAATDPIAVAKIRAAI 111
>gnl|CDD|185212 PRK15312, PRK15312, antimicrobial resistance protein Mig-14;
Provisional.
Length = 298
Score = 28.6 bits (64), Expect = 3.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 161 SFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF 191
SF + R V + GG +++ HPDI D F
Sbjct: 17 SFTLYREVFTQYGGSINM-----HPDIVDYF 42
>gnl|CDD|197269 cd09172, PLDc_Nuc_like_unchar1_1, Putative catalytic domain, repeat
1, of uncharacterized hypothetical proteins similar to
Nuc, an endonuclease from Salmonella typhimurium.
Putative catalytic domain, repeat 1, of uncharacterized
hypothetical proteins, which show high sequence homology
to the endonuclease from Salmonella typhimurium and
vertebrate phospholipase D6. Nuc and PLD6 belong to the
phospholipase D (PLD) superfamily. They contain a short
conserved sequence motif, the HKD motif (H-x-K-x(4)-D,
where x represents any amino acid residue), which
characterizes the PLD superfamily and is essential for
catalysis. Nuc and PLD6 utilize a two-step mechanism to
cleave phosphodiester bonds: Upon substrate binding, the
bond is first attacked by a histidine residue from one
HKD motif to form a covalent phosphohistidine
intermediate, which is then hydrolyzed by water with the
aid of a second histidine residue from the other HKD
motif in the opposite subunit. However, proteins in this
subfamily have two HKD motifs in a single polypeptide
chain.
Length = 144
Score = 27.7 bits (62), Expect = 4.9
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 69 LGHNSSFLQGPAFAPPRIREAIWCGSTNSTT 99
L HN + P R+ GSTN TT
Sbjct: 89 LMHNKFLVVDRKDGPNRV----LTGSTNFTT 115
>gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of
Sulfurisphaera ohwakuensis DNA polymerase B3 and similar
archaeal family-B DNA polymerases. The 3'-5'
exonuclease domain of archaeal proteins with similarity
to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a
family-B DNA polymerase. Family-B DNA polymerases
contain an N-terminal DEDDy DnaQ-like exonuclease domain
in the same polypeptide chain as the polymerase domain,
similar to family-A DNA polymerases. B3 exhibits both
polymerase and 3'-5' exonuclease activities. This
exonuclease domain contains three sequence motifs termed
ExoI, ExoII and ExoIII, with a specific YX(3)D pattern
at ExoIII. These motifs are clustered around the active
site and are involved in metal binding and catalysis.
The exonuclease domain of family B polymerases also
contains a beta hairpin structure that plays an
important role in active site switching in the event of
nucleotide misincorporation. Archaeal proteins that are
involved in DNA replication are similar to those from
eukaryotes. Some archaea possess multiple family-B DNA
polymerases. B3 is mainly found in crenarchaea.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B-DNA polymerases support independent
gene duplications during the evolution of archaeal and
eukaryotic family-B DNA polymerases.
Length = 188
Score = 27.7 bits (62), Expect = 5.8
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 107 DPRVLTDVG--DVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLG-GDHSISFP 163
DP ++ + + V+ I G+DD +I E VK V E DP +++G ++ +P
Sbjct: 24 DPIIVISLATSNGDVEFILAEGLDD---RKIIREFVKYVKEYDP--DIIVGYNSNAFDWP 78
Query: 164 VIRAVSEKLGGPVDV 178
+ + LG +DV
Sbjct: 79 YLVERARVLGVKLDV 93
>gnl|CDD|236024 PRK07475, PRK07475, hypothetical protein; Provisional.
Length = 245
Score = 27.6 bits (62), Expect = 7.5
Identities = 31/148 (20%), Positives = 45/148 (30%), Gaps = 45/148 (30%)
Query: 45 AKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKE 104
A + EL ALG VA++SLL VPL A P + I +S T
Sbjct: 90 ALFQRELAAALGVPVATSSLLQVPLIQ--------ALLPAGQKVGILTADASSLTPA--H 139
Query: 105 LNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPV 164
L V D +P+ + + G +L +
Sbjct: 140 LLAVGVPPDTSSLPIAGLEEGG---------------------EFRRNILENRGELDNEA 178
Query: 165 IRAVSEKLGGPVDVLH-----LDAHPDI 187
+V+ L+ HPDI
Sbjct: 179 AEQ---------EVVAAARALLERHPDI 197
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 27.1 bits (61), Expect = 9.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 153 VLGGDHSISFPVIRAVSEKLGGP 175
V+G DH F + A E LG
Sbjct: 164 VVGADHHGHFKRLFAALELLGYD 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.398
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,421,959
Number of extensions: 1523140
Number of successful extensions: 1501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1469
Number of HSP's successfully gapped: 46
Length of query: 297
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 201
Effective length of database: 6,679,618
Effective search space: 1342603218
Effective search space used: 1342603218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)