RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022416
(297 letters)
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 137 bits (347), Expect = 1e-38
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 120
+ G+P + SS+ +G +AP IR A N + G +L + D+GD+
Sbjct: 39 VFGIPFDNTSSYRRGSKYAPDSIRGA----YVNLESYEYSYGIDLLASGMA-DLGDMEES 93
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
D + +++ + V VM + + P++LGG+HSI+ +RA+ + + ++
Sbjct: 94 ------EDVEYVIDTVESVVSAVMSDGKI-PIMLGGEHSITVGAVRALPKDVD----LVI 142
Query: 181 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 240
+DAH D ++ GNKY+HA R ++ R+ +GIRS+++E E V
Sbjct: 143 VDAHSDFRSSYMGNKYNHACVTRRALDLLGEGRITSIGIRSVSREEFEDPDFRKVSFISS 202
Query: 241 RTFSRD 246
++
Sbjct: 203 FDVKKN 208
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II),
nysgxrc structural genomics, NEW YORK SGX research
center for struc genomics; 2.30A {Clostridium difficile}
Length = 287
Score = 127 bits (321), Expect = 4e-35
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 15/183 (8%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 120
+ GV +S G FA +R+ T +L D + D GD+ +
Sbjct: 12 VFGVGFDGTTSNRPGARFASSSMRKE----FYGLETYSPFLDLDLEDYNIC-DYGDLEI- 65
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
G ++++ I + ++ + + P ++GG+H ++ P +AV EK + V+H
Sbjct: 66 ---SVG-STEQVLKEIYQETYKIVRDSKV-PFMIGGEHLVTLPAFKAVHEKYN-DIYVIH 119
Query: 181 LDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEM 240
DAH D+ + + +K SHA+ RI + ++ Q GIRS TKE + E+
Sbjct: 120 FDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEI 179
Query: 241 RTF 243
Sbjct: 180 GGI 182
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 124 bits (314), Expect = 8e-34
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 22/188 (11%)
Query: 64 LLGVPL---GHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRV---LTDVGDV 117
++G P + G P R + ELN L D GD+
Sbjct: 34 IIGFPYDEGCVRNGGRAGAKKGPAAFRFF----LQRLGSVNNLELNVDASHLKLYDAGDI 89
Query: 118 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 177
+ + + V V+ P V+GG + S P RA+ G V
Sbjct: 90 TASTLEEA-------HEKLESKVFTVLARGAF-PFVIGGGNDQSAPNGRAMLRAFPGDVG 141
Query: 178 VLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYAR--RLLQVGIRSI--TKEGREQGKRF 233
V+++D+H D+ + + + F +++E R ++ + + +
Sbjct: 142 VINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDH 201
Query: 234 GVEQYEMR 241
+
Sbjct: 202 QGHLMWLS 209
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 121 bits (305), Expect = 1e-32
Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 13/204 (6%)
Query: 47 LKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKE-L 105
+ LV+ G A + LGVP F G FAP +REA T +GK L
Sbjct: 16 ARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRL 75
Query: 106 NDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVI 165
D GDV + + + ITE+ + V + P+ LGGDHS+S+P++
Sbjct: 76 QGVTFA-DAGDVIL----PSL-EPQLAHDRITEAARQVRGRCRV-PVFLGGDHSVSYPLL 128
Query: 166 RAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-GYARRLLQVGIRSI-- 222
RA ++ + V+ LDAH D D K+S++S F R E + VG+R +
Sbjct: 129 RAFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRF 186
Query: 223 TKEGREQGKRFGVEQYEMRTFSRD 246
E + G M + D
Sbjct: 187 DPEAVAAARARGHTIIPMDDVTAD 210
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 121 bits (306), Expect = 1e-32
Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 42 RERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT-- 99
R+ K+ + G + +L+GVPL +S G +FAP IR+A +S+
Sbjct: 20 RDVTKMSDLIATWDGQDIKGPALIGVPLSKSSISHSGASFAPGTIRQA----LKHSSAYS 75
Query: 100 -EEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDP-LHPLVLGGD 157
E G+ + + D+GD+ + D + + I +++ ++ + P PL+LGGD
Sbjct: 76 AELGEHVVSELLY-DLGDIDI----HVT-DIVKSHHHIFQTMHALLSDHPDWVPLILGGD 129
Query: 158 HSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLL 215
+SIS+ I+A+++ G V+ DAH D+ + +G ++ + F R+++ + L+
Sbjct: 130 NSISYSTIKAIAQT-KGTTAVIQFDAHHDVRNTEDGG-PTNGTPFRRLLDEEIIEGQHLI 187
Query: 216 QVGIR--SITKEGREQGKRFGVEQYEMRTF 243
Q+GIR S ++ K+ V + M
Sbjct: 188 QLGIREFSNSQAYEAYAKKHNVNIHTMDMI 217
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 119 bits (302), Expect = 5e-32
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 16/183 (8%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREA-IWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 122
+ GVPL ++F G P +R A + N +D V+ D GD
Sbjct: 51 VSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFDPFDDLAVI-DYGDCWF--- 106
Query: 123 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 182
D + I E + +++ D L LGGDH I++P++ A ++K G P+ ++H D
Sbjct: 107 -DAH-HPLSIKPAIVEHARTILQSDAR-MLTLGGDHYITYPLLIAHAQKYGKPLSLIHFD 163
Query: 183 AHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQYEM 240
AH D + + +H + F + ++ G + +QVGIR+ + G+ +
Sbjct: 164 AHCDTWADDAPDSLNHGTMFYKAVKDGLIDPKASVQVGIRTWNDD------YLGINVLDA 217
Query: 241 RTF 243
Sbjct: 218 AWV 220
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 116 bits (294), Expect = 7e-31
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 14/185 (7%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREA-IWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 122
++G P +S+ G F P IR G D D GD+ +
Sbjct: 34 VIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDR--GPGTFDLINCVDAGDINL--- 88
Query: 123 RDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLD 182
D + ++ + +++ + L++GGDHS++ +RAV+E+ G P+ V+HLD
Sbjct: 89 -TPF-DMNIAIDTAQSHLSGLLKANAA-FLMIGGDHSLTVAALRAVAEQHG-PLAVVHLD 144
Query: 183 AHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQY 238
AH D AF G +Y H + F ++ ++Q+GIR + + + GV
Sbjct: 145 AHSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVV 204
Query: 239 EMRTF 243
F
Sbjct: 205 TADEF 209
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae
O1 biovar eltor, structure genomics, protein structure
initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Length = 336
Score = 109 bits (275), Expect = 5e-28
Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 35/196 (17%)
Query: 64 LLGVPLGHNSSFLQ---GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
L+G + G AP I++A N P + D+G++ +
Sbjct: 47 LIGFECDAGVERNKGRTGAKHAPSLIKQA----LANLAWH------HPIPIYDLGNIRCE 96
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------G 174
G + ++ + ++ + +VLGG H I++ + +++
Sbjct: 97 -----GDELEQAQQECAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQP 149
Query: 175 PVDVLHLDAHPDIYDA---FEGNKYSHASSFARIMEGGYAR----RLLQVGIR--SITKE 225
+ +++ DAH D+ + S + F +I + +G+ S T
Sbjct: 150 RIGIINFDAHFDLRTFESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPA 209
Query: 226 GREQGKRFGVEQYEMR 241
E+ + GV E +
Sbjct: 210 LFERADKLGVWYVEDK 225
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas
aeruginosa} PDB: 3nip_A
Length = 326
Score = 104 bits (263), Expect = 2e-26
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
L+GVP ++ G P +R + RV D+GD PV
Sbjct: 39 LIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVG-DLGDAPV---- 93
Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
+ D + I + V L PL +GGDH ++ P+ RA+ + P+ ++H DA
Sbjct: 94 NPI-DLLDSLRRIEGFYRQVHAAGTL-PLSVGGDHLVTLPIFRALGRE--RPLGMVHFDA 149
Query: 184 HPDIYDAFEG-NKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVEQY 238
H D D + G N Y+H + F R +E G R +Q+GIR + + + G+
Sbjct: 150 HSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVI 209
Query: 239 EMRTF 243
M F
Sbjct: 210 HMEEF 214
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A*
4cev_A 5cev_A*
Length = 299
Score = 101 bits (254), Expect = 2e-25
Identities = 38/199 (19%), Positives = 77/199 (38%), Gaps = 27/199 (13%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREA-----IWCGSTNSTTEEGKELNDPRVLTDVGDV 117
S++GVP+ + +G P +R A + + + L + GD
Sbjct: 5 SIIGVPMDLGQTR-RGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDS 63
Query: 118 PVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVD 177
++ ++ + +V V++ PLVLGGDHSI+ + V++ +
Sbjct: 64 RLRNLKAVA----EANEKLAAAVDQVVQRGRF-PLVLGGDHSIAIGTLAGVAKH-YERLG 117
Query: 178 VLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY--------------ARRLLQVGIRSI 222
V+ DAH D+ + H A + G+ ++ +G+RS+
Sbjct: 118 VIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSL 177
Query: 223 TKEGREQGKRFGVEQYEMR 241
+ ++ + G++ Y M
Sbjct: 178 DEGEKKFIREKGIKIYTMH 196
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 100 bits (251), Expect = 8e-25
Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 43/208 (20%)
Query: 63 SLLGVP--LGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
+++G P G +G P IREA + D GD+
Sbjct: 4 AVIGAPFSQG---QKRKGVEHGPAAIREA----GLMKRLSS----LGCHL-KDFGDLSFT 51
Query: 121 EIRDCGVDDDRLMN---------VITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEK 171
+ + ++ ++N + E V + + + LGGDHS++ I +
Sbjct: 52 PVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYS-CVTLGGDHSLAIGTISGHARH 110
Query: 172 LGGPVDVLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------------ARR 213
+ V+ +DAH DI + H + ++ +
Sbjct: 111 -CPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSAS 169
Query: 214 LLQVGIRSITKEGREQGKRFGVEQYEMR 241
++ +G+R + K + ++ + MR
Sbjct: 170 IVYIGLRDVDPPEHFILKNYDIQYFSMR 197
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 98.8 bits (247), Expect = 2e-24
Identities = 49/200 (24%), Positives = 76/200 (38%), Gaps = 35/200 (17%)
Query: 63 SLLGVP--LGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPV- 119
+++GVP LG N G P +R A E+ ++L V D+GDVPV
Sbjct: 4 AVVGVPMDLGANRR---GVDMGPSALRYA-------RLLEQLEDL-GYTV-EDLGDVPVS 51
Query: 120 -QEIRDCGVDDDRLMNVITESVKLVMEEDPL-----HPLVLGGDHSISFPVIRAVSEKLG 173
+ I + ++ E P+VLGGDHS+S + + G
Sbjct: 52 LARASRRRGRGLAYLEEIRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAAR--G 109
Query: 174 GPVDVLHLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------ARRLLQVGIRS 221
V V+ +DAH D + H A + G+ + ++ VG+RS
Sbjct: 110 RRVGVVWVDAHADFNTPETSPSGNVHGMPLAVLSGLGHPRLTEVFRAVDPKDVVLVGVRS 169
Query: 222 ITKEGREQGKRFGVEQYEMR 241
+ + K GV Y M
Sbjct: 170 LDPGEKRLLKEAGVRVYTMH 189
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 96.6 bits (241), Expect = 2e-23
Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 28/200 (14%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEE---GKELNDPRVLTDVGDVPV 119
++G P G P +R+A +E + D+ +
Sbjct: 9 GIIGAPFSKGQP-RGGVEEGPTVLRKA----GLLEKLKEQECDVKDYGDLPFADIPNDSP 63
Query: 120 QEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVL 179
+I + + V V + + LVLGGDHS++ I + + V+
Sbjct: 64 FQIVKNPRSVGKASEQLAGKVAEVKKNGRI-SLVLGGDHSLAIGSISGHARV-HPDLGVI 121
Query: 180 HLDAHPDIYD-AFEGNKYSHASSFARIMEGGY-----------------ARRLLQVGIRS 221
+DAH DI + H + +++ A+ ++ +G+R
Sbjct: 122 WVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRD 181
Query: 222 ITKEGREQGKRFGVEQYEMR 241
+ K G++ + M
Sbjct: 182 VDPGEHYILKTLGIKYFSMT 201
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI
hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Length = 330
Score = 94.8 bits (236), Expect = 1e-22
Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 44/214 (20%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI 122
L+G+ +S +G R+REA + G + + +T V +E
Sbjct: 2 ILVGLEAELGASK-RGTDKGVRRLREA-------LSATHGDVIKGMQTITQERCVLYKEF 53
Query: 123 RDCGVDDDRLMNV---ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEK-LGGPVDV 178
R +D + + +K V E+ PL+L +H+ F + +A + +
Sbjct: 54 RYAKNFEDYYLFCKENLIPCMKEVFEKKEF-PLILSSEHANMFGIFQAFRSVHKDKKIGI 112
Query: 179 LHLDAHPDIYD-AFEGNKYSHASSFARIMEGGYAR------------------------- 212
L+LDAH DI+ +K+ H ++ +
Sbjct: 113 LYLDAHADIHTAYDSDSKHIHGMPLGMVLNRVRSGFNRMSESEEKAWQKLCSLGLEKGGL 172
Query: 213 -----RLLQVGIRSITKEGREQGKRFGVEQYEMR 241
L+ G+RS + R+ + + + +
Sbjct: 173 EIDPKCLVYFGVRSTEQSERDVIRELQIPLFSVD 206
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 92.0 bits (229), Expect = 9e-22
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTT---EEGKELNDPRVLTDVGDVPVQ 120
+GVPL +S G F P IR S G D + D+GDV +
Sbjct: 42 FVGVPLDIGTSLRSGTRFGPREIRAE----SVMIRPYNMATGAAPFDSLNVADIGDVAI- 96
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
+ + +I + ++ L PL LGGDH+I+ P++RA+ + G V ++H
Sbjct: 97 ----NTFNLLEAVRIIEQEYDRILGHGIL-PLTLGGDHTITLPILRAIXKXH-GXVGLVH 150
Query: 181 LDAHPDIYDAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRS--ITKEGREQGKRFGVE 236
+DAH D+ D G +H ++F R +E R++Q+G+R+ T E + G
Sbjct: 151 VDAHADVNDHMFGEXIAHGTTFRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFR 210
Query: 237 QYEMRTFSR 245
+
Sbjct: 211 VVQAEECWH 219
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 88.4 bits (219), Expect = 4e-20
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 136 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDA----- 190
+ +++ + + L +GGDH ++F I + + + V+ +DAH DI
Sbjct: 174 LFDTMSNELRKKNF-VLNIGGDHGVAFSSILSSLQM-YQNLRVIWIDAHGDINIPETSPS 231
Query: 191 --FEGNKYSHASSFARIMEGGY----------ARRLLQVGIRSITKEGREQGKRFGVEQY 238
+ G +H + + +GIR I + K+ + Y
Sbjct: 232 GNYHGMTLAHTLGLFKKKVPYFEWSENLTYLKPENTAIIGIRDIDAYEKIILKKCNINYY 291
Query: 239 EMR 241
+
Sbjct: 292 TIF 294
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 6e-06
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 144 MEEDPLHPLVLG-GDHSISFPVIRAVSEKLGGPVDVLH---LDAHPDIYDAFEGNK--YS 197
M+ PL L G V L P+ + F + +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 198 HASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLEN----- 252
A + + GY L++ + G+ V + F + +LE
Sbjct: 57 PAELVGKFL--GYVSSLVEPS---------KVGQFDQVLNLCLTEF--ENCYLEGNDIHA 103
Query: 253 LVSLSLLLKYIHILSQLQTVIRAYIA 278
L + LL + L + + +I+ YI
Sbjct: 104 LAA-KLLQENDTTLVKTKELIKNYIT 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.006
Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 56/189 (29%)
Query: 102 GKELNDPRVLT-DV-GDVPVQEIRDCGV---------DDDRLMNVITESVKLVMEEDPLH 150
GK + DV VQ D + + ++ ++ KL+ + DP
Sbjct: 162 GKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDP-- 211
Query: 151 PLVLGGDHSISFPV-IRAVSEKL-------GGPVDVLHLD--AHPDIYDAFEGNKYSHAS 200
DHS + + I ++ +L +L L + ++AF +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------ 265
Query: 201 SFARIMEGGYARRLLQVGIRSIT-KEGREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLL 259
+I LL + +T ++ + M T + D SLL
Sbjct: 266 --CKI--------LLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDE-------VKSLL 307
Query: 260 LKYIHILSQ 268
LKY+ Q
Sbjct: 308 LKYLDCRPQ 316
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 31.7 bits (72), Expect = 0.27
Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 25/181 (13%)
Query: 12 YLQKLKSANIPIAVIEKGQN------------RVIDASLTLIRERAKLKGELVRALGGAV 59
L K+ SA +I+ G + + +L RAK + + + GA
Sbjct: 11 LLDKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALA---MRAKERPLRISLMTGAS 67
Query: 60 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNST----TEEGKELNDPRVLT-DV 114
L + P +R+AI G +E ++L + ++ D+
Sbjct: 68 LGNDLDKQLTEAGVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDI 127
Query: 115 GDVPVQEIRD-----CGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVS 169
+ I + + + ++++E + H L G H I P R
Sbjct: 128 AVIEAAAITEQGHIVPTTSVGNSASFAIFAKQVIVEINLAHSTNLEGLHDIYIPTYRPTR 187
Query: 170 E 170
Sbjct: 188 T 188
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein,
flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB:
4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Length = 115
Score = 30.2 bits (69), Expect = 0.28
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
LG N+ FLQGP +IR+AI
Sbjct: 41 LGRNARFLQGPETDQATVQKIRDAIRDQ 68
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena
sativa} PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 31.5 bits (71), Expect = 0.33
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAI 90
LG N+ FLQGP +IR+AI
Sbjct: 55 LGRNARFLQGPETDRATVRKIRDAI 79
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin,
electron transport; HET: FMN; 1.90A {Chlamydomonas
reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Length = 109
Score = 29.8 bits (68), Expect = 0.41
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
LGHN FLQG P +IR+AI G
Sbjct: 37 LGHNCRFLQGEGTDPKEVQKIRDAIKKG 64
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing,
ATP-binding, chromophore, flavoprotein, FMN, kinase,
membrane, nucleotide-binding; HET: FMN; 2.00A
{Arabidopsis thaliana} PDB: 2z6c_A*
Length = 130
Score = 29.4 bits (67), Expect = 0.63
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAI 90
+G N FLQGP +IR+ +
Sbjct: 50 VGRNCRFLQGPDTDKNEVAKIRDCV 74
>3t50_A Blue-light-activated histidine kinase; PAS superfamily,
blue-light photoreceptor, FMN binding, TRAN; HET: FMN;
1.64A {Brucella melitensis}
Length = 128
Score = 29.4 bits (67), Expect = 0.63
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
+G N FLQG P I+ AI
Sbjct: 41 MGRNCRFLQGHGTDPAHVRAIKSAIAAE 68
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV,
PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN;
1.45A {Bacillus subtilis} PDB: 2pr6_A*
Length = 132
Score = 29.0 bits (66), Expect = 0.75
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
LG N FLQG P IR A+
Sbjct: 43 LGKNCRFLQGKHTDPAEVDNIRTALQNK 70
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding,
serine/threonine-protein kinase, light-induced signal
trans phototropin1, nucleotide-binding; HET: FMN; 1.40A
{Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A*
1g28_A*
Length = 146
Score = 29.1 bits (66), Expect = 0.85
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAI 90
LG N FLQGP +IR+AI
Sbjct: 46 LGRNCRFLQGPETDRATVRKIRDAI 70
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 30.2 bits (67), Expect = 0.88
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 166 RAVSEKLGGPVDVLHLDA-----HPDIYDAFEGNKYSHASSFARIMEGGYARRL 214
+ + G P V H+DA + F NKY + R M+ GY + +
Sbjct: 343 KDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 396
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004
orthologous group, structural genomics consortium, SGC,
unknown function; NMR {Thermoplasma acidophilum}
Length = 118
Score = 28.4 bits (63), Expect = 1.2
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 138 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNK 195
+S+K + E G S P I + K +++ + D +
Sbjct: 37 DSIKRKISELGFDVKSEGDLIIASIPGISRIEIKPDKRKILVNTGDYDSDADKLAVVR 94
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor,
signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB:
3ulf_A*
Length = 166
Score = 28.8 bits (65), Expect = 1.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
LG N FLQGP P +IR AI G
Sbjct: 79 LGRNCRFLQGPETDPRAVDKIRNAITKG 106
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 28.7 bits (65), Expect = 1.5
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
L + FLQG RIR+A+ G
Sbjct: 69 LYQDCRFLQGDDRDQLGRARIRKAMAEG 96
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription
factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter
litoralis}
Length = 258
Score = 29.2 bits (65), Expect = 1.7
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 69 LGHNSSFLQGPAFAPP---RIREAIWCG 93
+G N FL G P +IR+ +
Sbjct: 107 VGRNCRFLAGSGTEPWLTDKIRQGVREH 134
>3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB:
3s8y_A
Length = 280
Score = 28.3 bits (63), Expect = 3.2
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 100 EEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVL----G 155
+ D +L V + D G D+ L + V +PL L G
Sbjct: 196 TDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSNNYPLELRSHEG 255
Query: 156 GDHSISF 162
DHS F
Sbjct: 256 YDHSYYF 262
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 27.7 bits (61), Expect = 5.6
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 197 SHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDR-QFLEN-LV 254
S A R + Y LQ G I K E+ E + F R +
Sbjct: 216 SFAIPQGREV-INY-YMPLQYGFDGIIKLCDEKIAEVMGEAGDDGDFGMSRGYYYAAMKE 273
Query: 255 SLSLLLKYIHILSQL 269
L + S+
Sbjct: 274 ITKGLSAWCENYSKR 288
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 26.7 bits (60), Expect = 7.9
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 17 KSANIPIAVIEKG---QNRVIDASLTLIRERAK 46
+ P +E+ + R + A L + E
Sbjct: 176 RDPREPTLFVERASTPKERRVHARLEEVAEGKV 208
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 26.8 bits (60), Expect = 9.1
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 17 KSANIPIAVIEKG---QNRVIDASLTLIRERAKLKG 49
+++ P A++ +G +V +L + A+
Sbjct: 210 LASDTPAALVSQGTQAGQQVTRGALAELPALARRYQ 245
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 26.8 bits (60), Expect = 9.4
Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 45/139 (32%)
Query: 89 AIWCGSTNSTTEEGKELNDPRVLT--------DVGDVPV----------QEIRDCGV--- 127
W G + ++L+D V+ D ++I G
Sbjct: 127 RFWGGLVPGNIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILA 186
Query: 128 ----DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVI-------RAV--SEKLGG 174
++ ++ + +EE L D+S + P++ R + ++
Sbjct: 187 VHAESNE----MVNALTTIAIEEQRLTVK----DYSEARPIVSELEAVERILRFAQLTCC 238
Query: 175 PVDVLHL---DAHPDIYDA 190
P+ + H+ I A
Sbjct: 239 PIHICHVSSRKVLKRIKQA 257
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target
9375A, divergent enolase, lyase, PSI-2; 1.60A
{Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A
3es7_A 3fyy_A 3hpf_A*
Length = 391
Score = 26.9 bits (60), Expect = 9.7
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 154 LGGDHSISFPVIRAVSEKLGGPVDVLHLDAH 184
+G + + V E+ G V + D
Sbjct: 165 VGKNLDADEEFLSRVKEEFGSRVRIKSYDFS 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.398
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,593,572
Number of extensions: 287613
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 44
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)