RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022416
(297 letters)
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae
[TaxId: 666]}
Length = 324
Score = 76.8 bits (188), Expect = 1e-16
Identities = 34/224 (15%), Positives = 75/224 (33%), Gaps = 35/224 (15%)
Query: 64 LLGVPLGHNSSFLQ---GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
L+G + G AP I++A+ + P + D+G++ +
Sbjct: 38 LIGFECDAGVERNKGRTGAKHAPSLIKQALA----------NLAWHHPIPIYDLGNIRCE 87
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------G 174
G + ++ + ++ + +VLGG H I++ + +++
Sbjct: 88 -----GDELEQAQQECAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQP 140
Query: 175 PVDVLHLDAHPDIYDA---FEGNKYSHASSFARIMEGGYAR------RLLQVGIRSITKE 225
+ +++ DAH D+ + S + F +I + L V S T
Sbjct: 141 RIGIINFDAHFDLRTFESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPA 200
Query: 226 GREQGKRFGVEQYEMRTFSRDRQFLENLVSLSLLLKYIHILSQL 269
E+ + GV E + FS + ++ +
Sbjct: 201 LFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTI 244
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 65.7 bits (159), Expect = 6e-13
Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELND----PRVLTDVGDVP 118
+++G P +G P IREA +S K+ D P D+ +
Sbjct: 4 AVIGAPFSQGQK-RKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVPKDDLYNNL 62
Query: 119 VQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDV 178
+ R G+ + L V++ +V D + LGGDHS++ I + V
Sbjct: 63 IVNPRSVGLANQELAEVVSRAV-----SDGYSCVTLGGDHSLAIGTISGHARHCPDLC-V 116
Query: 179 LHLDAHPDIYDAFEG-NKYSHASSFARIMEGGYAR-----------------RLLQVGIR 220
+ +DAH DI + H + ++ + ++ +G+R
Sbjct: 117 VWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLR 176
Query: 221 SITKEGREQGKRFGVEQYEMRTFSR 245
+ K + ++ + MR R
Sbjct: 177 DVDPPEHFILKNYDIQYFSMRDIDR 201
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 65.3 bits (158), Expect = 8e-13
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 12/190 (6%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
++G P +S+ G F P IR + G D D GD+ +
Sbjct: 26 VIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVG-IDRGPGTFDLINCVDAGDINLTPFD 84
Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
D ++ + + L++GGDHS++ +RAV + GP+ V+HLDA
Sbjct: 85 MNIAIDTAQSHLSG------LLKANAAFLMIGGDHSLTVAALRAV-AEQHGPLAVVHLDA 137
Query: 184 HPDIYDAFEGNKYSHASSFARIMEGGYAR--RLLQVGIR--SITKEGREQGKRFGVEQYE 239
H D AF G +Y H + F ++ ++Q+GIR + + + + GV
Sbjct: 138 HSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVT 197
Query: 240 MRTFSRDRQF 249
F
Sbjct: 198 ADEFGELGVG 207
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 63.3 bits (153), Expect = 3e-12
Identities = 37/203 (18%), Positives = 70/203 (34%), Gaps = 26/203 (12%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVL--TDVGDVPVQ 120
++G P G P +R+A G E+ ++ D L D+ +
Sbjct: 5 GIIGAPF-SKGQPRGGVEEGPTVLRKA---GLLEKLKEQECDVKDYGDLPFADIPNDSPF 60
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
+I + + V V + LVLGGDHS++ I ++ + V+
Sbjct: 61 QIVKNPRSVGKASEQLAGKVAEVKKNG-RISLVLGGDHSLAIGSISGH-ARVHPDLGVIW 118
Query: 181 LDAHPDIYDAFEGNK-YSHASSFARIMEGG-----------------YARRLLQVGIRSI 222
+DAH DI H + +++ A+ ++ +G+R +
Sbjct: 119 VDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDV 178
Query: 223 TKEGREQGKRFGVEQYEMRTFSR 245
K G++ + M R
Sbjct: 179 DPGEHYILKTLGIKYFSMTEVDR 201
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 60.7 bits (146), Expect = 3e-11
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 14/174 (8%)
Query: 60 ASTSLLGVPLG---HNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGD 116
A ++G P + G P R + + + E + + ++
Sbjct: 18 ADIVIIGFPYDEGCVRNGGRAGAKKGPAAFRFFLQRLGSVNNLELNVDASHLKLYD---- 73
Query: 117 VPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPV 176
D + ES + P V+GG + S P RA+ G V
Sbjct: 74 -----AGDITASTLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFPGDV 128
Query: 177 DVLHLDAHPDIYDAFEGNKYSHASSFARIMEG--GYARRLLQVGIRSITKEGRE 228
V+++D+H D+ + + + F +++E +R ++ +
Sbjct: 129 GVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALH 182
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 60.0 bits (144), Expect = 4e-11
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 11/200 (5%)
Query: 47 LKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELN 106
+ LV+ G A + LGVP F G FAP +REA T +GK
Sbjct: 14 ARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRL 73
Query: 107 DPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIR 166
D GDV + + + DR+ + + P+ LGGDHS+S+P++R
Sbjct: 74 QGVTFADAGDVILPS-LEPQLAHDRITEAARQ-----VRGRCRVPVFLGGDHSVSYPLLR 127
Query: 167 AVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFAR-IMEGGYARRLLQVGIRSI--T 223
A ++ + V+ LDAH D D K+S++S F R + VG+R +
Sbjct: 128 AFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFD 185
Query: 224 KEGREQGKRFGVEQYEMRTF 243
E + G M
Sbjct: 186 PEAVAAARARGHTIIPMDDV 205
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}
Length = 298
Score = 57.6 bits (138), Expect = 3e-10
Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 35/189 (18%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQE- 121
S++GVP+ + +G P +R A E + L+ + D+GD+P+ +
Sbjct: 4 SIIGVPMDLGQTR-RGVDMGPSAMRYA-------GVIERLERLHYD--IEDLGDIPIGKA 53
Query: 122 --IRDCGVDDDRLMNVITESVKLVME------EDPLHPLVLGGDHSISFPVIRAVSEKLG 173
+ + G R + + E+ + + + PLVLGGDHSI+ + V++
Sbjct: 54 ERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKH-Y 112
Query: 174 GPVDVLHLDAHPDIYDA-FEGNKYSHASSFARIM--------------EGGYARRLLQVG 218
+ V+ DAH D+ A + H A + ++ +G
Sbjct: 113 ERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIG 172
Query: 219 IRSITKEGR 227
+RS+ + +
Sbjct: 173 VRSLDEGEK 181
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 29.3 bits (65), Expect = 0.41
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 171 KLGGPVDVLHLDAHPDIYDA-----FEGNKYSHASSFARIMEGGYARRL 214
LG P DV +DA + F G+K+ + + M+ G+ + +
Sbjct: 98 SLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLI 146
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.9 bits (64), Expect = 0.50
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 168 VSEKLGGPVDVLHLDAHP-----DIYDAFEGNKYSHASSFARIMEGGYARRL 214
+ G P V H+DA F NKY + R M+ GY + +
Sbjct: 94 IYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 145
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 28.4 bits (63), Expect = 1.1
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 25/127 (19%)
Query: 150 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FAR-- 204
L G + + + E G H D P + +G S A +
Sbjct: 255 QDLRFGAGDLRAAFWLVDLLES-AGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILK 313
Query: 205 -----IMEGGYARRLLQ-----VGIRSITKEGREQGKR-------FGVEQYEMRTFSRDR 247
+ L+ + +G ++ F V+ R + +R
Sbjct: 314 ERAAAFRADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFER 373
Query: 248 QFLENLV 254
L+ L
Sbjct: 374 --LDQLA 378
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 26.9 bits (58), Expect = 2.3
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 244 SRDRQFLENLVSLSLLLKYIHILSQLQTVIRAYIAFFY 281
S RQ+ E + + + + + + I Y Y
Sbjct: 2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.398
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,079,296
Number of extensions: 50046
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 12
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)