BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022417
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b PE=3 SV=2
Length = 1759
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Query: 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI 136
L +DW E LN R A HS LL L + VV+ +KN RS + + +++ D+
Sbjct: 1269 LADEDWEKKMEGLNFVRCLAAFHSDLLNTKLHETTFAVVQEVKNLRSGVSRAAVVCLGDL 1328
Query: 137 FSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKL-K 195
F+ L S LD+ V LL KA + F+ E+ D+AL MV ++TP + L
Sbjct: 1329 FTY----LKKSMDQELDSAVRALLHKAGESNTFIREDVDKALKAMVNNVTPARAVTSLIN 1384
Query: 196 TYVKHTNPRIRAKAAISISICVTKMGLE----GMKELGLVSLVQVAAGLLNDRLPEAREA 251
H + +R A ++ V M E G K++ L+ AA D E R
Sbjct: 1385 GGQSHLHIAVRRCTAQHLADVVECMDPERISSGTKDMA-DRLLPAAAKFAQDSSQETRYY 1443
Query: 252 ARSMV 256
R M+
Sbjct: 1444 GRKML 1448
>sp|Q9Y4F4|F179B_HUMAN Protein FAM179B OS=Homo sapiens GN=FAM179B PE=1 SV=4
Length = 1720
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
L+ PE + + L +DW E LN R A HS +L L + VV+ +K
Sbjct: 1249 LRPFSKPEIALTEALRLLADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVK 1308
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
N RS + + +++ SD+F+ L S LD V LL KA + F+ E+ D+AL
Sbjct: 1309 NLRSGVSRAAVVCLSDLFTY----LKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALR 1364
Query: 180 TMVESITP 187
MV ++TP
Sbjct: 1365 AMVNNVTP 1372
>sp|Q3TYG6|F179A_MOUSE Protein FAM179A OS=Mus musculus GN=Fam179a PE=2 SV=1
Length = 1002
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
L+ +PE + ++ L+S DW + L N +R A HS +L L V V +
Sbjct: 483 LRPFSNPELGLTDALQCLNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVT 542
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
N RS + + +I D+F K +D + + +V LL K +F+ A+RAL
Sbjct: 543 NLRSKVSRLAISTLGDLFRVL-KKNMDQEA---EEIVRCLLQKMGNTSEFIQRAANRALG 598
Query: 180 TMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLE 223
MVE++TP L L + V H NP +R A +S + ++G E
Sbjct: 599 AMVENVTPARALVALTSAGVYHRNPLVRKCTAKHLSAVLEQIGAE 643
>sp|Q6ZUX3|F179A_HUMAN Protein FAM179A OS=Homo sapiens GN=FAM179A PE=2 SV=2
Length = 1019
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVM 111
+D + L+ +PE + ++ L+S DW + L + +R A HS +L L V
Sbjct: 474 MDLRACKELRPFSNPELGLRDALQCLNSSDWQMKEKGLVSIQRLAACHSEVLTGKLHDVC 533
Query: 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVC 171
VV + N RS + +I D+F A K +D ++ + +LQ K + +F+
Sbjct: 534 LVVTGEVTNLRSKVSHLAISTLGDLFQAL-KKNMDQEAEEIARCLLQ---KMADTNEFIQ 589
Query: 172 EEADRALNTMVESIT---PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228
A ++L MVE++T L +L Y H NP IR AA +S + ++G E +
Sbjct: 590 RAAGQSLRAMVENVTLARSLVVLTSAGVY--HRNPLIRKYAAEHLSAVLEQIGAEKLLSG 647
Query: 229 GLVS---LVQVAAGLLNDRLPEAREAARSMV-----NSMYNAF 263
S LV L D + R R MV N+ ++AF
Sbjct: 648 TRDSTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANTKFDAF 690
>sp|Q7S9L2|STU1_NEUCR Protein stu-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=stu-1 PE=3 SV=1
Length = 1136
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 80 KDWTNVCESLNNARRF------ALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAA 133
++W ES+ RR + H S L L ++ ++KA+ + R++L K
Sbjct: 315 QNWLKREESMTKLRRLIAGNAVSDFHDSFLA-ALRALLDGIIKAVTSLRTSLSKEGCALV 373
Query: 134 SDIFSAFGDKLLDSTSDALDNLVLQLLMK-ASQDKKFVCEEADRALNTMVESITPL-PLL 191
DI +A+G + D + +++Q +K + KK +A+ +NT++ ++ L+
Sbjct: 374 QDIATAYGPGM-----DPMVEILMQTFVKLCAATKKISSAQANATINTILGKVSYTNRLM 428
Query: 192 QKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKELGLVSLVQ--VAAGLLNDRLPE 247
Q + + N + R A ++ +TKM ++ G + L++ + GL D P
Sbjct: 429 QHIWMACQDKNVQPRLYATEWLTTMLTKMAHHKNQVEHTGGLDLIEKCIKKGLA-DANPG 487
Query: 248 AREAARSMVNSMYNAFTENEEH 269
RE R+ + + H
Sbjct: 488 VREKMRATYWTFSGIWPARATH 509
>sp|Q17VN6|RPOBC_HELAH Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Helicobacter acinonychis (strain Sheeba) GN=rpoBC PE=3
SV=1
Length = 2890
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 84 NVCESLNNARRFALHHSSLLEPNLE---------KVMAVVVKAMKNPRSALCKTSIMAAS 134
V + + RRF + H L P ++ ++ MK+ L + +
Sbjct: 1469 GVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKE 1528
Query: 135 DIFSAF---GDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL 191
+A+ G KL+ + D L+ Q + + +D+ FV + A+ ++E I + LL
Sbjct: 1529 PGEAAYDNEGTKLV-AKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLIVLL 1587
Query: 192 QKLKTYVKHTN 202
Q LK VK TN
Sbjct: 1588 QSLKEEVKETN 1598
>sp|Q4I9B7|STU1_GIBZE Protein STU1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=STU1 PE=3 SV=1
Length = 1145
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 73 LIEGLDSK-DWTNVCESLNNARRF----ALHHSSLLEPNLEKVMAVVVKAMKNPRSALCK 127
EG +++ +W S++ RR S ++ ++ ++K + + R++LCK
Sbjct: 297 FFEGKETEHNWLKRENSVHKLRRLIAGNVTDFSDTFLAGVKSILDGIIKVITSLRTSLCK 356
Query: 128 TSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQD-KKFVCEEADRALNTMVESIT 186
+I FG + D L ++Q +K S KK + A+ +NT++ +T
Sbjct: 357 EGCGLIQEIAYTFGPAM-----DPLIEQLMQCFVKLSAGTKKISSQLANVTVNTILSQVT 411
Query: 187 PLP-LLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMKELGLVSLVQ--VAAGLL 241
P L+Q + + N R A + + K G ++ G V +V+ + GL
Sbjct: 412 YTPRLMQHIWFACQDKNVAPRTYATEWLKTILKKEGHHKHHLEHTGGVDIVEKCLKKGLA 471
Query: 242 NDRLPEAREAARS 254
D P RE RS
Sbjct: 472 -DANPAVREKTRS 483
>sp|Q08972|NEW1_YEAST [NU+] prion formation protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NEW1 PE=1 SV=1
Length = 1196
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 168 KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPR-IRAKAAISISICVTKMGLEGMK 226
K + EE + N+ E I ++ L ++K NP +R A + IS + +
Sbjct: 162 KLIIEEFGKEGNSTGEKIEEWKIVDVLSKFIKPKNPSLVRESAMLIISNIAQFFSGKPPQ 221
Query: 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263
E L+ VA ++D+ + AA+ ++S+ N F
Sbjct: 222 EAYLLPFFNVALDCISDKENTVKRAAQHAIDSLLNCF 258
>sp|B4SC83|GLGA_PELPB Glycogen synthase OS=Pelodictyon phaeoclathratiforme (strain DSM
5477 / BU-1) GN=glgA PE=3 SV=1
Length = 489
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
+ + + ++ ++ G+DS+ W + + L +R++L H ++ L+ A++ +A
Sbjct: 247 RVLEEHQAKFYGILNGIDSRQWNSAADKLIK-KRYSLEH---MDGKLDNKKALLEEAGLP 302
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKF 169
++ D F G +LL + + L L +QL++ S DKK+
Sbjct: 303 YTEGTPVVGVILNFDEFQ--GAELLQQSLEQLAALDIQLIISGSGDKKY 349
>sp|A1RWQ1|SYA_THEPD Alanine--tRNA ligase OS=Thermofilum pendens (strain Hrk 5) GN=alaS
PE=3 SV=1
Length = 907
Score = 32.0 bits (71), Expect = 5.0, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 131 MAASDIFSAFGDKL------LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES 184
M A + GDKL LD++ + L+ L + +K V + + L V S
Sbjct: 741 MPALEYVQGMGDKLKNLQEILDASYEGLEEKAKSLKSRIEALEKEVKKLREELLKGGV-S 799
Query: 185 ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDR 244
++P+ +Q ++ YV ++ +AA++IS T + G +L +V LL DR
Sbjct: 800 VSPVATVQGVQVYVYFSDEYEPREAALAISRTRTSSVILAYNSKGNFAL-KVTDDLL-DR 857
Query: 245 LPEAREAARSMVNSM 259
L +ARE RS+ S+
Sbjct: 858 L-DAREIGRSVCESL 871
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,393,360
Number of Sequences: 539616
Number of extensions: 3730539
Number of successful extensions: 12106
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12086
Number of HSP's gapped (non-prelim): 31
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)