Query 022417
Match_columns 297
No_of_seqs 141 out of 249
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:23:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2933 Uncharacterized conser 100.0 4.1E-51 8.8E-56 377.5 17.3 290 1-295 4-321 (334)
2 PF12348 CLASP_N: CLASP N term 100.0 6.8E-31 1.5E-35 235.4 18.7 186 78-267 17-212 (228)
3 KOG1820 Microtubule-associated 99.4 1.8E-11 4E-16 128.0 19.9 195 68-266 253-448 (815)
4 KOG1242 Protein containing ada 99.2 4.8E-10 1E-14 112.5 17.0 210 69-294 255-482 (569)
5 KOG2171 Karyopherin (importin) 97.9 0.0016 3.4E-08 70.3 20.2 206 74-288 354-614 (1075)
6 KOG1242 Protein containing ada 97.9 0.0013 2.9E-08 66.7 18.7 150 108-265 173-328 (569)
7 PF05004 IFRD: Interferon-rela 97.7 0.015 3.3E-07 55.3 22.4 198 67-268 42-264 (309)
8 PF12348 CLASP_N: CLASP N term 97.6 0.003 6.5E-08 56.3 15.7 142 73-223 58-211 (228)
9 KOG2171 Karyopherin (importin) 97.6 0.0055 1.2E-07 66.2 19.4 199 78-289 216-439 (1075)
10 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00059 1.3E-08 54.3 9.0 67 191-259 29-95 (97)
11 KOG2956 CLIP-associating prote 97.6 0.025 5.5E-07 56.4 21.9 190 70-266 288-482 (516)
12 PRK09687 putative lyase; Provi 97.4 0.0097 2.1E-07 55.8 16.7 159 78-256 101-277 (280)
13 PF01602 Adaptin_N: Adaptin N 97.4 0.02 4.4E-07 57.0 19.3 172 69-259 8-179 (526)
14 PTZ00429 beta-adaptin; Provisi 97.4 0.019 4.2E-07 60.8 19.5 177 69-262 33-209 (746)
15 PRK09687 putative lyase; Provi 97.3 0.013 2.8E-07 55.0 15.7 127 110-258 91-218 (280)
16 KOG2023 Nuclear transport rece 97.2 0.028 6.1E-07 58.2 17.6 211 75-288 400-718 (885)
17 PF12717 Cnd1: non-SMC mitotic 97.1 0.054 1.2E-06 47.2 17.1 149 124-285 3-159 (178)
18 PRK13800 putative oxidoreducta 97.0 0.022 4.8E-07 61.5 16.0 156 72-257 718-895 (897)
19 PF01602 Adaptin_N: Adaptin N 97.0 0.011 2.4E-07 58.8 12.8 179 70-263 81-298 (526)
20 PLN03200 cellulose synthase-in 96.9 0.031 6.7E-07 64.6 16.7 193 69-266 531-769 (2102)
21 PF12717 Cnd1: non-SMC mitotic 96.7 0.038 8.3E-07 48.1 12.3 89 169-262 3-93 (178)
22 KOG1248 Uncharacterized conser 96.7 0.33 7.2E-06 53.2 21.3 189 74-267 703-904 (1176)
23 COG5181 HSH155 U2 snRNP splice 96.6 0.052 1.1E-06 56.0 14.5 178 70-259 690-868 (975)
24 KOG0213 Splicing factor 3b, su 96.6 0.053 1.1E-06 56.9 14.4 178 70-259 885-1063(1172)
25 cd00020 ARM Armadillo/beta-cat 96.5 0.012 2.7E-07 45.8 7.5 71 69-139 8-79 (120)
26 PF13646 HEAT_2: HEAT repeats; 96.5 0.025 5.4E-07 42.4 8.9 83 158-256 3-87 (88)
27 KOG0211 Protein phosphatase 2A 96.5 0.23 5.1E-06 52.7 18.9 170 79-261 490-664 (759)
28 PTZ00429 beta-adaptin; Provisi 96.4 0.25 5.4E-06 52.6 18.6 150 107-264 138-329 (746)
29 PRK13800 putative oxidoreducta 96.4 0.15 3.2E-06 55.2 17.4 126 70-214 654-800 (897)
30 cd00020 ARM Armadillo/beta-cat 96.3 0.023 4.9E-07 44.3 7.9 102 157-259 10-118 (120)
31 PF13513 HEAT_EZ: HEAT-like re 96.2 0.014 2.9E-07 40.7 5.4 55 82-136 1-55 (55)
32 PF12755 Vac14_Fab1_bd: Vacuol 96.1 0.058 1.3E-06 42.9 9.3 87 84-174 2-88 (97)
33 KOG1060 Vesicle coat complex A 95.9 0.41 8.8E-06 50.7 16.5 165 72-256 39-204 (968)
34 KOG2956 CLIP-associating prote 95.9 0.35 7.6E-06 48.4 15.4 138 80-227 342-486 (516)
35 cd03568 VHS_STAM VHS domain fa 95.7 0.17 3.6E-06 43.1 11.0 96 186-281 34-132 (144)
36 COG5096 Vesicle coat complex, 95.7 0.84 1.8E-05 48.5 18.2 168 77-262 28-196 (757)
37 KOG2023 Nuclear transport rece 95.7 0.099 2.2E-06 54.3 10.8 100 189-290 174-296 (885)
38 PF10508 Proteasom_PSMB: Prote 95.6 1.7 3.7E-05 44.0 19.5 177 70-253 79-269 (503)
39 PF05004 IFRD: Interferon-rela 95.2 2.4 5.2E-05 40.4 18.1 155 105-263 125-301 (309)
40 PF13646 HEAT_2: HEAT repeats; 95.1 0.097 2.1E-06 39.1 6.9 86 70-179 1-88 (88)
41 cd03561 VHS VHS domain family; 94.9 0.86 1.9E-05 37.9 12.7 81 186-266 34-117 (133)
42 KOG0213 Splicing factor 3b, su 94.8 5 0.00011 42.8 20.0 190 78-267 521-834 (1172)
43 KOG0915 Uncharacterized conser 94.6 4.8 0.0001 45.7 20.4 141 69-210 1040-1193(1702)
44 KOG0212 Uncharacterized conser 94.5 1.7 3.7E-05 44.6 15.6 150 106-262 81-238 (675)
45 KOG0168 Putative ubiquitin fus 94.3 3.5 7.5E-05 44.4 17.8 206 67-282 166-381 (1051)
46 cd03569 VHS_Hrs_Vps27p VHS dom 94.3 0.77 1.7E-05 38.9 11.1 96 185-280 37-135 (142)
47 KOG1248 Uncharacterized conser 94.2 4.9 0.00011 44.5 19.2 180 81-265 667-860 (1176)
48 KOG1241 Karyopherin (importin) 94.2 2.7 5.8E-05 44.6 16.6 163 113-282 94-291 (859)
49 PF08167 RIX1: rRNA processing 94.1 2.1 4.5E-05 36.9 13.6 71 72-142 29-101 (165)
50 PLN03200 cellulose synthase-in 94.0 2.6 5.6E-05 49.6 17.6 187 69-261 447-638 (2102)
51 PF10363 DUF2435: Protein of u 94.0 0.51 1.1E-05 37.1 8.7 74 68-142 3-76 (92)
52 PF02985 HEAT: HEAT repeat; I 94.0 0.13 2.7E-06 32.0 4.2 30 190-219 1-30 (31)
53 smart00288 VHS Domain present 93.9 1 2.2E-05 37.5 10.9 91 187-277 35-129 (133)
54 COG1413 FOG: HEAT repeat [Ener 93.7 4.2 9.1E-05 38.2 16.1 154 68-260 43-208 (335)
55 PF00790 VHS: VHS domain; Int 93.7 0.7 1.5E-05 38.7 9.6 81 187-267 40-124 (140)
56 KOG0212 Uncharacterized conser 93.6 2.2 4.8E-05 43.9 14.3 182 72-261 4-196 (675)
57 KOG1824 TATA-binding protein-i 93.5 5.5 0.00012 43.4 17.6 131 122-259 146-284 (1233)
58 PF13513 HEAT_EZ: HEAT-like re 93.4 0.15 3.3E-06 35.3 4.3 53 203-257 1-53 (55)
59 cd03567 VHS_GGA VHS domain fam 93.2 1.5 3.3E-05 37.1 10.9 79 187-265 36-120 (139)
60 PF10274 ParcG: Parkin co-regu 92.9 1.5 3.4E-05 38.8 10.9 117 68-188 38-169 (183)
61 KOG2025 Chromosome condensatio 92.9 5.9 0.00013 42.0 16.5 171 69-258 86-256 (892)
62 KOG2032 Uncharacterized conser 92.8 3.3 7.2E-05 41.9 14.1 183 70-258 219-413 (533)
63 KOG1824 TATA-binding protein-i 92.3 16 0.00034 40.1 18.9 183 72-264 9-206 (1233)
64 PF12719 Cnd3: Nuclear condens 92.3 10 0.00022 35.6 17.2 158 70-268 28-188 (298)
65 COG5240 SEC21 Vesicle coat com 92.3 1.4 3.1E-05 45.5 10.9 188 69-260 304-554 (898)
66 KOG0915 Uncharacterized conser 92.2 5.8 0.00013 45.1 16.1 197 76-286 1139-1388(1702)
67 PF10508 Proteasom_PSMB: Prote 91.8 13 0.00028 37.7 17.5 189 69-261 203-420 (503)
68 KOG2149 Uncharacterized conser 91.4 6.8 0.00015 38.6 14.3 121 64-222 54-174 (393)
69 KOG2032 Uncharacterized conser 91.4 13 0.00027 37.9 16.3 191 69-260 300-530 (533)
70 PF02985 HEAT: HEAT repeat; I 91.4 0.44 9.5E-06 29.5 4.1 29 233-261 1-29 (31)
71 KOG0414 Chromosome condensatio 91.3 18 0.00039 40.3 18.5 113 165-280 323-451 (1251)
72 KOG1240 Protein kinase contain 91.2 28 0.00061 39.2 19.6 214 70-293 427-700 (1431)
73 PF12719 Cnd3: Nuclear condens 91.0 8.1 0.00018 36.2 14.2 127 132-260 6-142 (298)
74 cd03565 VHS_Tom1 VHS domain fa 89.7 5.6 0.00012 33.6 10.7 95 186-280 35-136 (141)
75 KOG1243 Protein kinase [Genera 89.4 13 0.00029 39.1 15.0 59 165-223 341-403 (690)
76 PF12231 Rif1_N: Rap1-interact 89.3 22 0.00049 34.5 16.7 156 82-266 148-308 (372)
77 COG5215 KAP95 Karyopherin (imp 89.2 21 0.00045 37.3 15.8 172 76-259 508-705 (858)
78 PF08506 Cse1: Cse1; InterPro 89.0 5.5 0.00012 39.0 11.5 129 83-213 226-370 (370)
79 PF04118 Dopey_N: Dopey, N-ter 88.4 12 0.00026 35.8 13.1 158 68-265 10-171 (307)
80 PF12830 Nipped-B_C: Sister ch 88.2 16 0.00034 32.1 12.9 119 163-282 17-165 (187)
81 KOG2062 26S proteasome regulat 88.2 19 0.00041 38.5 15.1 136 105-259 515-651 (929)
82 COG5181 HSH155 U2 snRNP splice 88.0 14 0.00031 38.8 13.9 114 107-223 686-799 (975)
83 COG1413 FOG: HEAT repeat [Ener 87.5 25 0.00054 32.9 15.3 165 68-257 74-269 (335)
84 KOG0166 Karyopherin (importin) 87.3 38 0.00081 34.8 16.9 184 70-260 68-265 (514)
85 KOG4653 Uncharacterized conser 87.1 35 0.00075 37.1 16.4 182 69-261 728-918 (982)
86 KOG0392 SNF2 family DNA-depend 86.9 15 0.00032 41.4 14.0 198 83-287 748-963 (1549)
87 KOG1967 DNA repair/transcripti 86.8 8 0.00017 42.0 11.7 133 75-211 874-1017(1030)
88 COG5098 Chromosome condensatio 86.3 15 0.00032 39.2 13.0 88 189-279 346-437 (1128)
89 KOG4199 Uncharacterized conser 86.3 23 0.0005 34.8 13.5 148 70-259 285-442 (461)
90 PLN03076 ARF guanine nucleotid 86.3 48 0.001 39.1 18.3 196 83-285 1152-1398(1780)
91 KOG0414 Chromosome condensatio 86.2 7.9 0.00017 43.0 11.5 128 81-261 936-1064(1251)
92 COG5218 YCG1 Chromosome conden 86.0 14 0.00031 38.6 12.6 173 68-258 91-263 (885)
93 KOG0413 Uncharacterized conser 85.9 8 0.00017 42.4 11.1 116 127-259 949-1071(1529)
94 PF12830 Nipped-B_C: Sister ch 85.8 4.8 0.0001 35.3 8.3 71 189-265 8-78 (187)
95 KOG1240 Protein kinase contain 85.4 22 0.00047 39.9 14.3 143 107-266 575-730 (1431)
96 TIGR02270 conserved hypothetic 85.2 27 0.00058 34.8 14.1 52 156-211 88-139 (410)
97 KOG1058 Vesicle coat complex C 85.0 59 0.0013 35.1 16.7 185 50-257 7-197 (948)
98 KOG1078 Vesicle coat complex C 84.8 17 0.00037 38.9 12.8 31 230-260 501-531 (865)
99 TIGR02270 conserved hypothetic 84.8 24 0.00052 35.1 13.5 118 110-258 87-204 (410)
100 KOG1967 DNA repair/transcripti 84.3 5.7 0.00012 43.0 9.2 107 70-179 911-1020(1030)
101 PF12460 MMS19_C: RNAPII trans 84.1 45 0.00098 32.8 15.9 126 108-238 270-412 (415)
102 KOG0166 Karyopherin (importin) 83.8 5.4 0.00012 40.7 8.6 192 62-263 231-435 (514)
103 KOG1525 Sister chromatid cohes 83.6 52 0.0011 37.4 16.7 118 151-268 256-413 (1266)
104 PF08569 Mo25: Mo25-like; Int 82.7 48 0.001 32.1 16.6 140 70-244 166-313 (335)
105 KOG0211 Protein phosphatase 2A 82.3 78 0.0017 34.1 17.2 178 74-263 443-627 (759)
106 PF13251 DUF4042: Domain of un 81.9 36 0.00079 30.1 12.2 159 84-265 2-178 (182)
107 cd00197 VHS_ENTH_ANTH VHS, ENT 81.8 10 0.00022 30.2 8.0 72 188-259 36-113 (115)
108 KOG4224 Armadillo repeat prote 81.6 8.7 0.00019 38.0 8.7 176 113-293 130-316 (550)
109 KOG1949 Uncharacterized conser 81.4 75 0.0016 34.2 15.7 152 108-263 82-251 (1005)
110 PF10521 DUF2454: Protein of u 80.7 48 0.001 30.9 13.3 142 101-244 111-277 (282)
111 cd03572 ENTH_epsin_related ENT 80.1 8.5 0.00018 31.9 7.0 72 189-261 38-119 (122)
112 PF10274 ParcG: Parkin co-regu 79.9 17 0.00037 32.3 9.3 96 183-286 32-130 (183)
113 KOG2259 Uncharacterized conser 79.8 81 0.0018 33.6 15.3 82 170-258 389-472 (823)
114 COG5096 Vesicle coat complex, 79.8 8.1 0.00018 41.3 8.4 63 191-261 94-156 (757)
115 KOG4653 Uncharacterized conser 78.9 1E+02 0.0022 33.8 16.0 195 61-268 761-971 (982)
116 PF08161 NUC173: NUC173 domain 78.9 20 0.00044 32.0 9.6 88 124-219 15-104 (198)
117 PF08064 UME: UME (NUC010) dom 78.7 23 0.0005 28.3 9.0 77 79-160 26-102 (107)
118 KOG1062 Vesicle coat complex A 78.6 14 0.00031 39.5 9.7 70 152-221 104-174 (866)
119 PF12231 Rif1_N: Rap1-interact 78.5 68 0.0015 31.2 14.1 180 97-282 120-306 (372)
120 PF11698 V-ATPase_H_C: V-ATPas 78.5 12 0.00027 30.9 7.5 69 69-138 44-115 (119)
121 PF12074 DUF3554: Domain of un 75.5 74 0.0016 30.2 13.1 177 87-265 38-239 (339)
122 COG5116 RPN2 26S proteasome re 74.0 60 0.0013 34.1 12.4 154 86-258 480-647 (926)
123 KOG2021 Nuclear mRNA export fa 73.7 98 0.0021 33.5 14.1 196 90-290 421-642 (980)
124 PLN03076 ARF guanine nucleotid 73.1 1.1E+02 0.0024 36.3 15.6 51 110-161 1348-1400(1780)
125 KOG0301 Phospholipase A2-activ 72.9 1.2E+02 0.0027 32.2 14.4 98 80-179 556-657 (745)
126 KOG1060 Vesicle coat complex A 72.5 90 0.0019 33.9 13.5 134 107-255 390-527 (968)
127 PF08767 CRM1_C: CRM1 C termin 72.4 52 0.0011 31.4 11.2 60 83-142 135-198 (319)
128 COG5218 YCG1 Chromosome conden 72.4 86 0.0019 33.1 13.0 112 152-267 47-167 (885)
129 PF04826 Arm_2: Armadillo-like 72.0 84 0.0018 29.1 15.3 172 71-250 57-251 (254)
130 PF12460 MMS19_C: RNAPII trans 71.2 1.1E+02 0.0024 30.1 19.0 188 65-261 186-394 (415)
131 KOG1059 Vesicle coat complex A 70.6 1.6E+02 0.0035 31.8 15.8 191 57-265 130-332 (877)
132 PF04826 Arm_2: Armadillo-like 70.1 77 0.0017 29.4 11.4 143 69-219 13-164 (254)
133 PF08713 DNA_alkylation: DNA a 70.0 21 0.00046 31.1 7.5 120 71-209 88-209 (213)
134 KOG1058 Vesicle coat complex C 69.5 87 0.0019 33.8 12.6 133 83-221 95-256 (948)
135 KOG1061 Vesicle coat complex A 68.2 1.3E+02 0.0028 32.2 13.7 110 65-186 80-192 (734)
136 KOG1241 Karyopherin (importin) 68.1 1.8E+02 0.004 31.4 18.2 182 78-261 227-435 (859)
137 KOG2274 Predicted importin 9 [ 67.8 2E+02 0.0043 31.7 15.4 126 67-199 3-138 (1005)
138 PF14664 RICTOR_N: Rapamycin-i 67.4 1.3E+02 0.0028 29.5 14.6 169 80-259 80-267 (371)
139 KOG1822 Uncharacterized conser 67.0 49 0.0011 38.9 10.9 134 124-263 108-250 (2067)
140 KOG1820 Microtubule-associated 66.7 2E+02 0.0043 31.4 15.0 128 87-224 314-449 (815)
141 KOG4224 Armadillo repeat prote 66.5 15 0.00033 36.4 6.1 130 72-213 337-473 (550)
142 PF12243 CTK3: CTD kinase subu 66.4 81 0.0017 26.7 10.5 115 145-266 1-124 (139)
143 KOG1078 Vesicle coat complex C 66.2 1.9E+02 0.0042 31.3 14.4 168 76-260 253-438 (865)
144 KOG1061 Vesicle coat complex A 65.4 2E+02 0.0043 30.9 15.1 125 73-207 285-442 (734)
145 KOG1848 Uncharacterized conser 65.0 1.1E+02 0.0024 35.2 12.8 153 110-283 998-1164(1610)
146 KOG2160 Armadillo/beta-catenin 64.6 23 0.00049 34.5 6.9 70 192-264 127-199 (342)
147 KOG1293 Proteins containing ar 64.0 2E+02 0.0044 30.5 14.0 127 124-256 392-528 (678)
148 PF10521 DUF2454: Protein of u 63.9 63 0.0014 30.1 9.7 92 189-280 119-223 (282)
149 PF08167 RIX1: rRNA processing 63.5 59 0.0013 27.8 8.8 76 82-160 85-164 (165)
150 PF14500 MMS19_N: Dos2-interac 63.0 1.3E+02 0.0028 27.9 16.4 154 73-265 4-157 (262)
151 PF14500 MMS19_N: Dos2-interac 62.5 51 0.0011 30.7 8.7 51 193-243 3-53 (262)
152 KOG0567 HEAT repeat-containing 62.2 1.5E+02 0.0032 28.2 11.5 96 108-219 186-281 (289)
153 KOG1243 Protein kinase [Genera 62.0 78 0.0017 33.6 10.6 99 188-290 329-443 (690)
154 KOG2081 Nuclear transport regu 61.8 53 0.0012 33.9 9.2 111 65-186 384-498 (559)
155 KOG1943 Beta-tubulin folding c 61.2 2.8E+02 0.0061 31.2 16.4 115 67-184 340-501 (1133)
156 PF08064 UME: UME (NUC010) dom 61.0 83 0.0018 25.0 9.0 87 102-194 4-94 (107)
157 KOG1020 Sister chromatid cohes 59.8 3.4E+02 0.0074 31.8 16.5 175 78-286 1235-1419(1692)
158 PF12783 Sec7_N: Guanine nucle 57.8 97 0.0021 26.2 9.1 109 81-194 35-154 (168)
159 KOG2062 26S proteasome regulat 57.6 66 0.0014 34.6 9.2 99 112-221 558-656 (929)
160 PF01417 ENTH: ENTH domain; I 57.4 53 0.0011 26.6 7.1 73 188-261 38-121 (125)
161 PF11698 V-ATPase_H_C: V-ATPas 57.4 49 0.0011 27.3 6.8 88 166-261 26-115 (119)
162 COG5064 SRP1 Karyopherin (impo 56.8 2.1E+02 0.0046 28.4 14.4 184 67-259 70-270 (526)
163 smart00802 UME Domain in UVSB 56.0 70 0.0015 25.8 7.4 75 81-160 28-102 (107)
164 KOG1087 Cytosolic sorting prot 55.9 84 0.0018 32.0 9.5 80 187-266 36-117 (470)
165 smart00802 UME Domain in UVSB 55.7 88 0.0019 25.2 7.9 88 101-194 3-94 (107)
166 PF10742 DUF2555: Protein of u 55.4 8.8 0.00019 27.6 1.8 42 67-108 11-55 (57)
167 COG5098 Chromosome condensatio 55.3 92 0.002 33.6 9.7 76 195-276 977-1066(1128)
168 PF11864 DUF3384: Domain of un 54.7 2.4E+02 0.0051 28.3 16.0 154 87-246 153-315 (464)
169 KOG1837 Uncharacterized conser 53.9 4.3E+02 0.0092 31.0 17.0 74 189-264 1541-1614(1621)
170 PF12765 Cohesin_HEAT: HEAT re 53.8 19 0.00041 23.9 3.2 26 230-255 16-41 (42)
171 KOG1059 Vesicle coat complex A 52.7 3.3E+02 0.0072 29.5 13.9 177 67-266 35-215 (877)
172 KOG1062 Vesicle coat complex A 52.7 85 0.0018 34.0 9.1 103 107-219 101-209 (866)
173 KOG4825 Component of synaptic 52.4 2.8E+02 0.006 28.4 12.4 145 79-223 404-560 (666)
174 cd00197 VHS_ENTH_ANTH VHS, ENT 52.3 29 0.00063 27.5 4.7 42 64-105 33-74 (115)
175 PF00514 Arm: Armadillo/beta-c 50.0 41 0.00088 21.5 4.3 30 188-217 11-40 (41)
176 PF05804 KAP: Kinesin-associat 48.9 3.7E+02 0.008 28.9 17.0 167 89-262 471-650 (708)
177 PF03224 V-ATPase_H_N: V-ATPas 48.2 51 0.0011 31.0 6.3 70 69-138 106-179 (312)
178 COG5116 RPN2 26S proteasome re 48.1 1E+02 0.0023 32.4 8.7 101 110-221 553-653 (926)
179 PF08506 Cse1: Cse1; InterPro 47.4 2E+02 0.0043 28.2 10.5 122 124-255 226-369 (370)
180 PF14228 MOR2-PAG1_mid: Cell m 47.3 4.8E+02 0.01 29.7 16.5 122 88-222 490-614 (1120)
181 COG5240 SEC21 Vesicle coat com 47.3 3.8E+02 0.0082 28.5 12.9 86 83-179 279-365 (898)
182 cd00871 PI4Ka Phosphoinositide 47.2 96 0.0021 27.3 7.4 91 172-268 53-153 (175)
183 KOG1077 Vesicle coat complex A 46.4 3E+02 0.0065 29.8 11.8 135 72-223 78-221 (938)
184 KOG2259 Uncharacterized conser 46.2 4.1E+02 0.0089 28.6 12.8 51 230-280 232-289 (823)
185 PF05536 Neurochondrin: Neuroc 46.0 3.6E+02 0.0077 27.9 14.8 179 68-252 5-204 (543)
186 KOG4524 Uncharacterized conser 45.8 4.7E+02 0.01 29.2 15.3 187 34-257 767-969 (1014)
187 PF12333 Ipi1_N: Rix1 complex 45.6 73 0.0016 25.2 5.9 52 190-242 12-63 (102)
188 PF01417 ENTH: ENTH domain; I 45.4 54 0.0012 26.5 5.3 42 67-108 38-82 (125)
189 PF02847 MA3: MA3 domain; Int 44.9 1.5E+02 0.0032 23.0 7.8 67 189-256 36-103 (113)
190 KOG1991 Nuclear transport rece 44.8 4.9E+02 0.011 29.1 14.4 127 56-186 490-630 (1010)
191 PF12397 U3snoRNP10: U3 small 44.3 1.6E+02 0.0035 23.4 8.9 84 188-279 5-92 (121)
192 cd03572 ENTH_epsin_related ENT 44.2 1.6E+02 0.0035 24.3 7.9 82 68-183 38-119 (122)
193 PF05918 API5: Apoptosis inhib 44.0 4E+02 0.0086 27.8 15.2 164 66-243 21-189 (556)
194 PF11467 LEDGF: Lens epitheliu 43.5 26 0.00056 28.4 3.0 36 245-280 61-96 (106)
195 PF05804 KAP: Kinesin-associat 43.2 3.7E+02 0.008 28.9 12.3 137 80-219 503-650 (708)
196 PF03378 CAS_CSE1: CAS/CSE pro 43.1 3.6E+02 0.0078 27.0 12.7 120 98-221 15-149 (435)
197 PF06371 Drf_GBD: Diaphanous G 42.0 1.5E+02 0.0032 25.0 7.8 49 169-217 131-186 (187)
198 KOG2160 Armadillo/beta-catenin 41.2 3.5E+02 0.0076 26.4 12.0 88 165-257 135-234 (342)
199 KOG1949 Uncharacterized conser 40.8 5.1E+02 0.011 28.2 14.9 171 72-257 178-367 (1005)
200 KOG2149 Uncharacterized conser 40.8 3.2E+02 0.0069 27.2 10.5 106 158-265 62-174 (393)
201 KOG2025 Chromosome condensatio 40.8 4E+02 0.0088 28.9 11.8 71 190-262 86-156 (892)
202 PF01347 Vitellogenin_N: Lipop 40.5 3.7E+02 0.0081 27.5 11.8 138 108-257 430-585 (618)
203 KOG2022 Nuclear transport rece 40.0 2.2E+02 0.0048 31.4 9.9 80 99-186 543-622 (982)
204 smart00145 PI3Ka Phosphoinosit 39.3 1.5E+02 0.0031 26.2 7.4 85 173-264 60-156 (184)
205 KOG2199 Signal transducing ada 39.3 1.8E+02 0.0039 29.1 8.5 80 187-266 43-123 (462)
206 PF10441 Urb2: Urb2/Npa2 famil 39.3 2.8E+02 0.0061 24.7 10.1 40 83-122 53-92 (223)
207 KOG0168 Putative ubiquitin fus 39.2 1.9E+02 0.0042 31.8 9.3 100 88-195 275-377 (1051)
208 cd07064 AlkD_like_1 A new stru 38.6 2.8E+02 0.0061 24.6 12.9 90 112-212 118-207 (208)
209 PF12612 TFCD_C: Tubulin foldi 38.1 2.7E+02 0.0059 24.2 11.1 107 151-262 4-117 (193)
210 KOG2011 Sister chromatid cohes 37.9 4.5E+02 0.0097 29.6 12.1 60 197-259 334-397 (1048)
211 PF12074 DUF3554: Domain of un 36.8 3.7E+02 0.008 25.4 11.2 33 186-218 58-90 (339)
212 KOG1943 Beta-tubulin folding c 36.7 6.7E+02 0.015 28.4 16.5 166 90-265 657-841 (1133)
213 PF00514 Arm: Armadillo/beta-c 35.9 86 0.0019 19.9 4.2 29 109-137 12-40 (41)
214 KOG0946 ER-Golgi vesicle-tethe 35.9 6.3E+02 0.014 27.8 14.1 185 66-280 20-212 (970)
215 KOG2434 RNA polymerase I trans 35.7 5.1E+02 0.011 26.7 14.7 135 77-222 44-184 (500)
216 cd07909 YciF YciF bacterial st 34.0 2.9E+02 0.0064 23.4 9.1 91 168-263 12-105 (147)
217 KOG2549 Transcription initiati 33.4 5.8E+02 0.013 26.7 19.1 85 200-289 309-399 (576)
218 PF14225 MOR2-PAG1_C: Cell mor 33.2 4E+02 0.0088 24.8 18.7 160 107-274 62-230 (262)
219 PF13001 Ecm29: Proteasome sta 32.8 5.4E+02 0.012 26.1 11.3 87 151-242 20-112 (501)
220 PF14631 FancD2: Fanconi anaem 32.5 8.7E+02 0.019 28.4 18.1 164 92-266 418-588 (1426)
221 PF12422 Condensin2nSMC: Conde 32.4 3.1E+02 0.0067 23.2 10.7 94 123-217 43-147 (152)
222 PF08623 TIP120: TATA-binding 31.7 1.8E+02 0.004 25.4 6.7 51 204-259 42-92 (169)
223 PF03224 V-ATPase_H_N: V-ATPas 31.1 4.4E+02 0.0096 24.6 11.7 169 89-259 31-225 (312)
224 KOG2973 Uncharacterized conser 31.1 1.3E+02 0.0028 29.2 6.0 62 194-258 8-69 (353)
225 PF10363 DUF2435: Protein of u 31.0 2.5E+02 0.0055 21.8 8.0 72 191-265 5-76 (92)
226 cd00256 VATPase_H VATPase_H, r 30.7 80 0.0017 31.7 4.8 68 70-138 355-425 (429)
227 KOG1825 Fry-like conserved pro 29.3 3E+02 0.0065 33.2 9.3 135 151-292 1168-1305(2206)
228 KOG0413 Uncharacterized conser 29.3 6.7E+02 0.015 28.4 11.4 111 152-265 573-690 (1529)
229 PF11838 ERAP1_C: ERAP1-like C 28.1 4.7E+02 0.01 23.9 10.8 114 131-261 40-158 (324)
230 cd00256 VATPase_H VATPase_H, r 28.0 6.3E+02 0.014 25.4 16.4 205 70-284 103-326 (429)
231 KOG4682 Uncharacterized conser 27.9 4E+02 0.0087 26.9 8.9 95 117-222 113-208 (488)
232 smart00185 ARM Armadillo/beta- 27.9 99 0.0021 18.9 3.4 28 190-217 13-40 (41)
233 KOG2137 Protein kinase [Signal 27.9 7.9E+02 0.017 26.4 16.4 103 151-258 385-493 (700)
234 PF06371 Drf_GBD: Diaphanous G 27.7 3.7E+02 0.008 22.6 8.3 83 166-259 100-185 (187)
235 PF00613 PI3Ka: Phosphoinositi 27.7 2.1E+02 0.0046 25.1 6.5 85 173-264 61-157 (184)
236 PF08569 Mo25: Mo25-like; Int 27.5 5.7E+02 0.012 24.7 15.7 175 70-259 78-281 (335)
237 KOG1517 Guanine nucleotide bin 26.8 2.3E+02 0.0051 32.0 7.6 77 187-264 597-674 (1387)
238 cd03561 VHS VHS domain family; 26.8 3.5E+02 0.0076 22.0 11.7 58 77-142 13-70 (133)
239 cd06561 AlkD_like A new struct 26.2 4E+02 0.0087 22.5 13.6 76 112-197 108-183 (197)
240 PF13001 Ecm29: Proteasome sta 25.9 7.1E+02 0.015 25.3 11.8 150 67-221 318-491 (501)
241 KOG2405 Predicted 3'-5' exonuc 25.9 1.7E+02 0.0037 29.2 5.9 93 193-294 22-117 (458)
242 KOG0889 Histone acetyltransfer 25.4 1E+03 0.023 30.6 13.1 173 110-285 985-1176(3550)
243 KOG4524 Uncharacterized conser 25.2 1.3E+02 0.0029 33.1 5.5 57 127-187 566-622 (1014)
244 PF11701 UNC45-central: Myosin 25.2 4.2E+02 0.009 22.3 8.4 68 187-257 84-155 (157)
245 KOG1020 Sister chromatid cohes 24.9 1.2E+03 0.026 27.6 17.9 137 109-258 816-957 (1692)
246 cd00864 PI3Ka Phosphoinositide 24.8 3.1E+02 0.0067 23.3 6.8 60 171-237 53-114 (152)
247 cd03569 VHS_Hrs_Vps27p VHS dom 24.3 4.2E+02 0.0092 22.1 10.2 75 65-142 38-118 (142)
248 KOG0803 Predicted E3 ubiquitin 24.2 1.2E+03 0.025 27.2 15.9 208 52-263 25-265 (1312)
249 smart00544 MA3 Domain in DAP-5 24.2 3.4E+02 0.0074 21.0 7.0 54 190-243 37-91 (113)
250 PF11640 TAN: Telomere-length 23.5 1.4E+02 0.003 25.2 4.4 51 68-118 4-57 (155)
251 cd03567 VHS_GGA VHS domain fam 23.5 4.4E+02 0.0096 22.0 9.9 35 153-187 37-71 (139)
252 PF09324 DUF1981: Domain of un 23.2 3.4E+02 0.0074 20.6 7.4 58 197-256 26-83 (86)
253 KOG0392 SNF2 family DNA-depend 23.0 1.2E+03 0.027 27.1 14.0 184 72-257 171-366 (1549)
254 PF11919 DUF3437: Domain of un 21.8 2.9E+02 0.0062 21.5 5.5 47 230-285 28-74 (90)
255 PF03752 ALF: Short repeats of 21.4 1.2E+02 0.0026 20.2 2.8 20 237-256 4-23 (43)
256 PF05974 DUF892: Domain of unk 21.2 5.1E+02 0.011 21.9 11.1 80 169-253 15-98 (159)
257 PF11865 DUF3385: Domain of un 21.0 5.2E+02 0.011 21.9 7.9 66 112-181 89-155 (160)
258 PF12530 DUF3730: Protein of u 20.5 6.3E+02 0.014 22.7 13.9 77 78-166 94-171 (234)
259 PF04118 Dopey_N: Dopey, N-ter 20.5 7.5E+02 0.016 23.6 14.6 161 99-267 87-257 (307)
260 PF04931 DNA_pol_phi: DNA poly 20.2 1E+03 0.022 25.7 11.1 118 69-188 4-128 (784)
No 1
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.1e-51 Score=377.51 Aligned_cols=290 Identities=36% Similarity=0.561 Sum_probs=257.7
Q ss_pred CCCCCCccCCCCCCCCC--cchh-------hhhccC---CCCCCCCCCCCC------CCCCCCCCCcccceeccCCCCCC
Q 022417 1 MALRPIDNALPITTPER--PKKQ-------VKFAAP---VQKQPDLSVNDE------NKASFPPSADAFIDYIPSENLKA 62 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~v~y~~~~eL~P 62 (297)
++|+.+-||+| .+.|| ++|. .|-.-. -.+++-..+..+ -..|+++...++++|+.+++|.|
T Consensus 4 ~~l~~~~~~~p-~sqer~~d~~as~~~~~~gK~~gs~e~~p~~~~~pl~h~~~t~~~~~~~~~e~~~~~~e~~~sk~l~~ 82 (334)
T KOG2933|consen 4 KALKDLRNALP-VSQERFQDKKASIVKSCMGKMSGSHEDKPPTNHPPLDHNSPTPQEAIKQEGERLIHSVEYIVSKNLSP 82 (334)
T ss_pred hhhhhccccCc-cchhcccccccccccchhhcccCccccCCCCCCCCccccCCCchhhhccccccccccHHHhhhcccCc
Confidence 47888999999 88888 7772 222100 011111222222 22346666788999999999999
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
|++|+.+|+.++.+|+|+||+.+|+||++||||+.||+|.+.+.|++++..|+++++||||+|||+||+|++|||+.|++
T Consensus 83 fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 83 FDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred cCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.++. ++|.++.+||+|++++|+||||+|++||.+||.+++|.++++.|+.+++|.|+.+|++++.|+.+|+.++|.
T Consensus 163 -~i~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 163 -SIDQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred -HHHH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 6775 499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh-------hh---HHHHHHHHHhcCChhhHHHHHH
Q 022417 223 EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE-------HK---QEAWQSFCQSNLQPIDAQSMVK 292 (297)
Q Consensus 223 ~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~-------~~---~~~~~~~~~~~l~~~~a~~~~~ 292 (297)
..+..++...+.+.+..-..|..|+.|+.||-++..+.++|....+ .+ ...|+.||++++++..+|++++
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~~~~lv~~e~~n~e~r~~t~~~v~~~~~~~~~~~~~lr 318 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKTAQELVEDESENPEVRKATWRGVCPKSLTGLSAQAVLR 318 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHHhhhhcchhhcCcchhhhhhhhcCccCCchhhHHHHHH
Confidence 9988899999999999999999999999999999999999977643 23 3799999999999999999999
Q ss_pred hhc
Q 022417 293 IIT 295 (297)
Q Consensus 293 ~~~ 295 (297)
+++
T Consensus 319 ~~n 321 (334)
T KOG2933|consen 319 VTN 321 (334)
T ss_pred Hhh
Confidence 986
No 2
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.97 E-value=6.8e-31 Score=235.38 Aligned_cols=186 Identities=29% Similarity=0.432 Sum_probs=148.5
Q ss_pred CCcCHHHHHHHHHHHHHHHhhC-----hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 78 DSKDWTNVCESLNNARRFALHH-----SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h-----~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
++.||+++++||..||+++.+| ++.+.+.+++++..+.+.+.|+||+|+++||.++++||..+|+ .|++. +
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~-~~~~~---~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS-HFEPY---A 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-GGHHH---H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-hHHHH---H
Confidence 7789999999999999999988 4566677888889999999999999999999999999999999 79876 8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chhH-HHHHHhhccCCCHHHHHHHHHHHHHHHHhhC--chhhhh-
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLPL-LQKLKTYVKHTNPRIRAKAAISISICVTKMG--LEGMKE- 227 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~kl-l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g--~~~l~~- 227 (297)
+.+++.||.+.+++|+||++.|..||..|+++|+ +.++ +..+..+.+|||+.+|..++.|+..+++.+| ...+..
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 9999999999999999999999999999999999 7888 7777889999999999999999999999999 333332
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
..++.+.+.+.++++|++||||++||++|+.|++.|++.+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 2368999999999999999999999999999999999765
No 3
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.40 E-value=1.8e-11 Score=128.01 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=172.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..-..+..++.|.||..+.+||..+-....... +...+....+...+.-..+|-.-.|...|..++..|+..++. .+.
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~-~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP-LFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch-hhH
Confidence 334477788999999999999998888887555 333455677777777788899999999999999999999999 555
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
+ .....++.+|.+.++.+.++++.+-.+++++++.+.-.+..+.+..+++||||++|..+..++..++..+++....
T Consensus 332 ~---~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 332 K---YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred H---HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 4 4778899999999999999999999999999998889999999999999999999999999999999999974444
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
.+..+.+++.+.+.++|.+.+||.+|..++..+.++++.+
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 5678999999999999999999999999999999999764
No 4
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4.8e-10 Score=112.50 Aligned_cols=210 Identities=20% Similarity=0.192 Sum_probs=166.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
-+..++..+....|+.+..++..++.++.+.|..+...+.++++.+.+.++|....|.++|+.|+..+.+...+.+
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d---- 330 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD---- 330 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH----
Confidence 3445555665669999999999999999999999999999999999999999999999999999999999888843
Q ss_pred hhhHHHHHHHHHHHhcc-------------ccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ-------------DKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~-------------sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+..+++.|+.-.++ .++||.+.-..+|..| +|.|.+++..++..+++++++.+.+
T Consensus 331 ---I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalm---------vpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 331 ---IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALM---------VPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred ---HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHH---------HHHHHHHHhhccchhhhhHHHHHHH
Confidence 55566666654444 3577877777788777 9999999999999999999999999
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhH-----HHHHHHHHhcCChhhHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ-----EAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~-----~~~~~~~~~~l~~~~a~~~ 290 (297)
++..+.++.-...-++.|++.+..-+.|..||+|.-+-+++..+.+-.+...+... |.=-.++.+...-..||.+
T Consensus 399 m~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 399 MCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred HHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhH
Confidence 99999655544433899999999999999999999999999887776665543211 2222333444445556665
Q ss_pred HHhh
Q 022417 291 VKII 294 (297)
Q Consensus 291 ~~~~ 294 (297)
..|.
T Consensus 479 ~evl 482 (569)
T KOG1242|consen 479 SEVL 482 (569)
T ss_pred HHHH
Confidence 5544
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0016 Score=70.25 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=143.4
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc-----
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST----- 148 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~----- 148 (297)
-..|.|.||..|.-||--|-.++.-.++.+.+.|.+|+..|+..++|+---|=-.||.++|-|...|.. .+...
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p-~iqk~~~e~l 432 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP-EIQKKHHERL 432 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH-HHHHHHHHhc
Confidence 345689999999999999999999999999999999999999999999998999999999998887776 44331
Q ss_pred ------------------------------------hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc----
Q 022417 149 ------------------------------------SDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITP---- 187 (297)
Q Consensus 149 ------------------------------------~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~---- 187 (297)
..++|.++..+|.-..+ +++-++|.+-.|+.++...+..
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 22355555544444444 6777888888777777666532
Q ss_pred --hhHHHHHHhhcc---CCC-HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHH
Q 022417 188 --LPLLQKLKTYVK---HTN-PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL---LNDRLPEAREAARSMVNS 258 (297)
Q Consensus 188 --~kll~~L~~~~~---hKn-~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~ 258 (297)
.+++|.|..-+. .|+ -.+|.++-.|+..+-.-.|.++.... .+.+++.+..+ ..|-+--.|.|.-..+..
T Consensus 513 Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~-a~eliqll~~~~~~~~~~dd~~~sy~~~~war 591 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL-AEELIQLLLELQGSDQDDDDPLRSYMIAFWAR 591 (1075)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh-HHHHHHHHHhhcccchhhccccHHHHHHHHHH
Confidence 367777754332 222 35577777777666666665554433 45566666655 444455556666666666
Q ss_pred HHHHhccchhhhHHHHHHHHHhcCChhhHH
Q 022417 259 MYNAFTENEEHKQEAWQSFCQSNLQPIDAQ 288 (297)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~l~~~~a~ 288 (297)
|=+.++ +.|+.|....+||.-.+
T Consensus 592 mc~ilg-------~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 592 MCRILG-------DDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHHhc-------hhhHhHHHHHhHHHHHh
Confidence 666666 46777777777765443
No 6
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.0013 Score=66.74 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCcchHHHHH-HHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 108 EKVMAVVVKAMKNPRSALCKT-SIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~-A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
..++..+.+.+.|..+..-|+ +..+..-.+..+|+ .++|. +.++++.+|.+.+|..+-+|++|..|..++..+.+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPy---iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPY---IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCch---HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 457788899999999999996 88888889999998 89986 89999999999999999999999999999999988
Q ss_pred ch---hHHHHHHhhccCCCHHHHHH--HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 187 PL---PLLQKLKTYVKHTNPRIRAK--AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 187 ~~---kll~~L~~~~~hKn~~VR~~--aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+. .+++.++.+.... .-|.+ +.+++. ++....+ ..++.-+..+++.+.+-+.|..||+|++|..++..+-+
T Consensus 249 ~~aVK~llpsll~~l~~~--kWrtK~aslellg-~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 249 AYAVKLLLPSLLGSLLEA--KWRTKMASLELLG-AMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred cchhhHhhhhhHHHHHHH--hhhhHHHHHHHHH-HHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 54 4666665444322 33333 333333 3333332 23444479999999999999999999999999988766
Q ss_pred Hhcc
Q 022417 262 AFTE 265 (297)
Q Consensus 262 ~~~~ 265 (297)
....
T Consensus 325 vidN 328 (569)
T KOG1242|consen 325 VIDN 328 (569)
T ss_pred hhcc
Confidence 5544
No 7
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.70 E-value=0.015 Score=55.30 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=138.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhC--hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHH--SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h--~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
+..|..+++.+..+.=+.|..||..+.++..+| ++++.....+++..+.+.+|.-++.=..-|+.+++=++-.+|. .
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-g 120 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-G 120 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-C
Confidence 445889999998888999999999999999765 5788888999999999999999988888888999999999885 3
Q ss_pred CCcchhhHHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHHHHhcC--ch------hHHHHHH--hhcc----------CC
Q 022417 145 LDSTSDALDNLVLQLLMKAS-Q--DKKFVCEEADRALNTMVESIT--PL------PLLQKLK--TYVK----------HT 201 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~-~--sn~FI~e~A~~AL~~Mv~~~s--~~------kll~~L~--~~~~----------hK 201 (297)
-+.+ .+-+-+.+.|.+.. + ...-+|..+-.||..++=.+. +. .++..+. .+.+ ..
T Consensus 121 ~~~~--ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 121 EDSE--EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred ccHH--HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 2322 23333344444443 2 233456666667765544322 21 2344332 1211 12
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
++.|...+...-.-++..++...+.. ..+..++.+..+|...+.++|-+|=.++..||+.....++
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~ 264 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEE 264 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 35666666555556666666544543 2577788899999999999999999999999999886543
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.64 E-value=0.003 Score=56.35 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=101.5
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
+...+.+..=.-...|+..+..|+.+-..-+.+.+..+++.+++.+.+-...+...|..|+..|+...+- .
T Consensus 58 i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---------~ 128 (228)
T PF12348_consen 58 IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---------S 128 (228)
T ss_dssp HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---------H
Confidence 3345555555667788888999998777778888999999999999999999999999999999987661 1
Q ss_pred HHHHHHHHH-HhccccHHHHHHHHHHHHHHHHhcC---c--------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 153 DNLVLQLLM-KASQDKKFVCEEADRALNTMVESIT---P--------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 153 d~ll~~LL~-Ka~~sn~FI~e~A~~AL~~Mv~~~s---~--------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
..++...+. -..+.|..+|..+-..|..+++..+ . ..+++.|..++.+.++.||..+-.++..+.+.+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 233233333 3456889999999999999998888 1 347777788999999999999999999998888
Q ss_pred Cch
Q 022417 221 GLE 223 (297)
Q Consensus 221 g~~ 223 (297)
|..
T Consensus 209 ~~~ 211 (228)
T PF12348_consen 209 PER 211 (228)
T ss_dssp -HH
T ss_pred CHh
Confidence 843
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0055 Score=66.18 Aligned_cols=199 Identities=18% Similarity=0.189 Sum_probs=150.9
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHH---cCCCCCCcchhhH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK--NPRSALCKTSIMAASDIFSA---FGDKLLDSTSDAL 152 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk--nLRS~Vsk~A~~tl~dLf~~---l~~~~md~~~~~l 152 (297)
..+|=..-.++|..+-.|+.-.|.++.+.|.+|+....+..+ ++-..+=-.|+..+.-+.++ ..+ ... ...
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-~~~---~~~ 291 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-KLA---LLG 291 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-hch---hhh
Confidence 344544456777778888888999999999999988877776 48888888888888887776 222 222 247
Q ss_pred HHHHHHHHHHhcc---ccHH-------------HHHHHHHHHHHHHHhcCchhHHHHHH----hhccCCCHHHHHHHHHH
Q 022417 153 DNLVLQLLMKASQ---DKKF-------------VCEEADRALNTMVESITPLPLLQKLK----TYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 153 d~ll~~LL~Ka~~---sn~F-------------I~e~A~~AL~~Mv~~~s~~kll~~L~----~~~~hKn~~VR~~aA~~ 212 (297)
+.++.++|+-+.+ +..+ -...|..+|+.+..+.+|..++|-+. ..++|-+..-|..+-..
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7888888887643 3222 33457899999999999988777764 46778888888766666
Q ss_pred HHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhhHHH
Q 022417 213 ISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQS 289 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~ 289 (297)
|..+.+ |.+......++++++++-++++|..|-||++|=.++--+..-|. ...|+++++.++|..+..
T Consensus 372 ls~i~E--Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-------p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 372 LSVIAE--GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-------PEIQKKHHERLPPALIAL 439 (1075)
T ss_pred HHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-------HHHHHHHHHhccHHHHHH
Confidence 666555 55555555799999999999999999999999998887777665 688999999999876654
No 10
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.57 E-value=0.00059 Score=54.28 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 191 LQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 191 l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++-+..+..+.+.+||..+++.|.++++-.+.+.+.. ...++..+.+.+.|.++.||..|.-+-+.|
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4555668889999999999999999998777444332 699999999999999999999997654443
No 11
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.56 E-value=0.025 Score=56.35 Aligned_cols=190 Identities=12% Similarity=0.204 Sum_probs=138.6
Q ss_pred HHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPR-SALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+...+.++++. .=+++-+||..|-.+......-+. ..+.+|+..+...+.+-+ ...-+.|+.-+++|++.-....+|
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 55666777544 778899999999999988876665 478999999999998844 455678999999999987775666
Q ss_pred cchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHH-HHHHHHHHHHhhCchh
Q 022417 147 STSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAK-AAISISICVTKMGLEG 224 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~-aA~~L~~~v~~~g~~~ 224 (297)
. .+..+..+|.-+.++. ..++.+++.|+.....+. |...+..+....-.- -.-|.. +-.++..+++++..+.
T Consensus 368 s----tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 368 S----TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQCIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred h----HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-chhHHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHH
Confidence 4 5778888899888854 566666666666655554 444444443322111 111222 3347888999988776
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+... ++-+.+++.+.-+-.+..||..+=-++..++...|-+
T Consensus 442 L~~l-l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 442 LLNL-LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHHh-hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 5443 7889999999999999999999999999999988843
No 12
>PRK09687 putative lyase; Provisional
Probab=97.42 E-value=0.0097 Score=55.84 Aligned_cols=159 Identities=17% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
++.||..+..+...|-.+...++.. ...++..+...+.+.-..|-+.|+.++|.+ |+ ...+.
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~----------~~ai~ 162 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND----------EAAIP 162 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC----------HHHHH
Confidence 4455555555555444443222111 122333344445555455556666665422 22 11233
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHH---------HHHHhhCchhhh--
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISIS---------ICVTKMGLEGMK-- 226 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~---------~~v~~~g~~~l~-- 226 (297)
.|+.-..+.+..|+..|..+|..| ......+++.|...+++.|..||..++..|. .+++.++.+.+.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~~~~ 240 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDL 240 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCchHHH
Confidence 333333456667777777777777 2234467777777777778888777776654 333333322211
Q ss_pred ------hccHHHHHHHHHHhcc-CCCHHHHHHHHHHH
Q 022417 227 ------ELGLVSLVQVAAGLLN-DRLPEAREAARSMV 256 (297)
Q Consensus 227 ------~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l 256 (297)
+.|-++.++.+..++. +.++++|..|+.++
T Consensus 241 a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 1234555555555554 55666666665554
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.38 E-value=0.02 Score=56.98 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=116.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+.++++..+ .+=.++.+++..|=.+..... .+......+++.+.+-.-.+-|-+-..+..++ . .+++
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~----~--~~~~ 75 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYL----H--EDPE 75 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHT----T--TSHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHh----h--cchh
Confidence 3445555554 466777887766555544332 34455566777777777777776666655554 2 2332
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
.+--++..+.+-..+.|.+++..|=++|..+...--...+++.+...+.|++|.||++++.++..+.+.-+ +.+ .
T Consensus 76 --~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~-~- 150 (526)
T PF01602_consen 76 --LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLV-E- 150 (526)
T ss_dssp --HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCH-H-
T ss_pred --HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHH-H-
Confidence 23334555555445689999998888888876443345677778889999999999999999999998722 221 1
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.. +++.+.+++.|.+|.++.+|=.++..+
T Consensus 151 -~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 151 -DE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 12 789999999999999999998888777
No 14
>PTZ00429 beta-adaptin; Provisional
Probab=97.35 E-value=0.019 Score=60.81 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=114.9
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+.++-..|++.|=.++.+|++.+=.+.... ..+..+...|++.+.+-.-.+-|-..+.+.. +++ .+++
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~----ya~--~~pe 101 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLS----TAR--LQPE 101 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----Hcc--cChH
Confidence 4566667777777777788887555544433 3344555566667766655555554444433 333 2332
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
..--.+..|.+-..+.|.+||--|=++|..+-..---..++..|..++.|++|-||+++|.++..+...-. +.+..
T Consensus 102 --lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~- 177 (746)
T PTZ00429 102 --KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQ- 177 (746)
T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccc-
Confidence 22233445544445689999998888776653333334566677789999999999999999999876533 32222
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
..+++.+.+++.|.+|.|...|=.++..+.+.
T Consensus 178 --~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 178 --QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred --cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 23445566678999999999998888777654
No 15
>PRK09687 putative lyase; Provisional
Probab=97.27 E-value=0.013 Score=54.97 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHHHHHHH-hcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch
Q 022417 110 VMAVVVKA-MKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 110 i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
+++.+... .++.=..|-+.|+.++|++... ...+ ....+..|..-..+++..||..+-.||. .+...
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~----~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~ 158 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKK----NPLY----SPKIVEQSQITAFDKSTNVRFAVAFALS----VINDE 158 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccc----cccc----chHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCH
Confidence 44444444 4555556666888888887422 1111 1234444444455678889988888884 34567
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..++.|...+++.++.||..++..|-.+ + .+.+...+.+...+.|.++++|..|-.++..
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSN----K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC----C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 8889998888899999998887665544 1 1234566777788899999999999888764
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.028 Score=58.20 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=149.3
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.|.+++|..+-.|+--+-.+|.-.=+.+.+.|+++++.++..+.+=.--|=+-.|=|++-.....-... ..+.+..
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~---~~~~f~p 476 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS---RDEYFKP 476 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC---hHhhhHH
Confidence 4678999999999999999999988888899999999999999998766666677777776655433312 2357999
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHH---hhccCCCHHHHHHHHHHHHH----------
Q 022417 155 LVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLK---TYVKHTNPRIRAKAAISISI---------- 215 (297)
Q Consensus 155 ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~---~~~~hKn~~VR~~aA~~L~~---------- 215 (297)
++..||.+..|+|+-|.|+|--|....-+...+ ..++..|. .+-+|||-.|-.-+-.-|..
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999999999888777543 24455542 35578887665333222222
Q ss_pred --------HHHhh------------------------C------------------------------ch----------
Q 022417 216 --------CVTKM------------------------G------------------------------LE---------- 223 (297)
Q Consensus 216 --------~v~~~------------------------g------------------------------~~---------- 223 (297)
++++| | ++
T Consensus 557 YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 557 YIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI 636 (885)
T ss_pred HHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence 22222 0 00
Q ss_pred --------hhhhc---c------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 224 --------GMKEL---G------LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 224 --------~l~~~---~------~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
++.++ + ...+.+.+-.|+.|..||||+.+.-++.-|-..+..+--.-.+.|--+.-.+|+|..
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPEN 716 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhh
Confidence 00000 1 135788999999999999999999999988777654432344566666666666654
Q ss_pred HH
Q 022417 287 AQ 288 (297)
Q Consensus 287 a~ 288 (297)
..
T Consensus 717 is 718 (885)
T KOG2023|consen 717 IS 718 (885)
T ss_pred ch
Confidence 43
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.13 E-value=0.054 Score=47.15 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc--Cc-hhHHHHHHhhccC
Q 022417 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI--TP-LPLLQKLKTYVKH 200 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~--s~-~kll~~L~~~~~h 200 (297)
.|=-+++.++|||+..+.+ .+|++ ++.+.....|.+..||..|-.+|..++..- -. ..++..+...+.+
T Consensus 3 ~vR~n~i~~l~DL~~r~~~-~ve~~-------~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN-LVEPY-------LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD 74 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH-HHHhH-------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC
Confidence 3455899999999999998 66654 444455556889999999999998887773 23 3455777788899
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL-----PEAREAARSMVNSMYNAFTENEEHKQEAWQ 275 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~-----pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~ 275 (297)
.|+.||..+..++..+..+-++..+ ...+.+.+..+-+... +..|+.-++++..|.+...+ +++...--+
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~ 149 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVE 149 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 9999999999999999988654444 3444444444443221 46677778888888887775 445677888
Q ss_pred HHHHhcCChh
Q 022417 276 SFCQSNLQPI 285 (297)
Q Consensus 276 ~~~~~~l~~~ 285 (297)
++|++.+...
T Consensus 150 kl~~~~~~~~ 159 (178)
T PF12717_consen 150 KLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHc
Confidence 8888877765
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.99 E-value=0.022 Score=61.49 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=81.8
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh---------------HHHHH-------HHHHHHHHhcCcchHHHHHH
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLE---------------PNLEK-------VMAVVVKAMKNPRSALCKTS 129 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~---------------~~L~~-------i~~~v~~~vknLRS~Vsk~A 129 (297)
.++..|.++||..+..|+..|.++-. ++.+. ..|.. .+..+...+++.-..|-.+|
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~--~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD--VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC--cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence 45677899999999999888776521 11110 01111 12334444455445555555
Q ss_pred HHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHH
Q 022417 130 IMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKA 209 (297)
Q Consensus 130 ~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~a 209 (297)
+.+++.+ |. . . .+. ..|+.-..++.-.||..|-.+|..+ .....++.|...+++.+..||..+
T Consensus 796 ~~aLg~~----g~-~--~---~~~---~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 796 LAALAEL----GC-P--P---DDV---AAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHHHHhc----CC-c--c---hhH---HHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHH
Confidence 5554443 22 0 0 011 1111112344556666666666543 334555666666666666666666
Q ss_pred HHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 210 AISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 210 A~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
+..|..+ -+ -....+.+.+.++|.+++||..|.++|.
T Consensus 859 ~~aL~~~---~~--------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW---PG--------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc---CC--------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 6555442 01 2334455566777777777777777654
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.97 E-value=0.011 Score=58.78 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=98.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
...+...|.++|=..+.-||+.+-.+. .+++. +.+.+.|.+.+.+...-|=|.|+.|+..+|+..+. .++.+
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~- 152 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDE- 152 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHH-
Confidence 345556666666666666666665554 44544 23445556666677777777777777777766444 33321
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHH----hhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLK----TYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~----~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
+-+.+..|| .+.+..+...|-.++..+ .+++. .+++.+. ..++..+|-++..+.+++..+......
T Consensus 153 --~~~~l~~lL---~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 153 --LIPKLKQLL---SDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --HHHHHHHHT---THSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --HHHHHhhhc---cCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 233333433 455566666666666666 22211 2333332 222455555544444433322211000
Q ss_pred h-------------------hh--------hh----c-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 223 E-------------------GM--------KE----L-GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 223 ~-------------------~l--------~~----~-~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
. .+ .. . ....+++.+.+++++.++++|+.+=..+..+...+
T Consensus 226 ~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 226 DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 0 00 00 0 15678999999999999999999988888774444
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.90 E-value=0.031 Score=64.63 Aligned_cols=193 Identities=13% Similarity=0.163 Sum_probs=137.0
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhh---------------hHH---H-------------------HHH
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLL---------------EPN---L-------------------EKV 110 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l---------------~~~---L-------------------~~i 110 (297)
.+..+++.|++.+++.+-.++..|-.|+.+.. +.+ ... + ...
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~gg 610 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDA 610 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcccc
Confidence 45667778899999999999999888864221 100 000 0 123
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-
Q 022417 111 MAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP- 189 (297)
Q Consensus 111 ~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k- 189 (297)
++.+...+++-...+-+.|+-+++.+|.. ++..... --....+++|+.-....+.=++.++..||..+..+.....
T Consensus 611 L~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~a-vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 611 LRTLIQLLSSSKEETQEKAASVLADIFSS--RQDLCES-LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHH-HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence 56777788888888999999999999963 2121110 0133455666665556666689999999999987655432
Q ss_pred -------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 190 -------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 190 -------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
+++.|...+++.+..++..++..|.+++..-. ...+.+....+..+.+++.+|++++|++|=.++..|-..
T Consensus 688 ~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 46677788899999999999999999998532 222233344578888899999999999999999998887
Q ss_pred hccc
Q 022417 263 FTEN 266 (297)
Q Consensus 263 ~~~~ 266 (297)
++-+
T Consensus 766 ~~~~ 769 (2102)
T PLN03200 766 FPVD 769 (2102)
T ss_pred CChh
Confidence 7643
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.68 E-value=0.038 Score=48.09 Aligned_cols=89 Identities=25% Similarity=0.269 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhcCc--hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCH
Q 022417 169 FVCEEADRALNTMVESITP--LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLP 246 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~~s~--~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~p 246 (297)
-||..+-.+|.-++..-+. .+.++.|...+.+.++.||+.+..+|..++.. | -+.- ...++..+..++.|.+|
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d--~ik~--k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D--MIKV--KGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C--ceee--hhhhhHHHHHHHcCCCH
Confidence 4666777777777766654 47888999999999999999999999999874 2 1111 35555666678899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022417 247 EAREAARSMVNSMYNA 262 (297)
Q Consensus 247 E~R~~aRk~l~~L~~~ 262 (297)
++|..|+..+..+...
T Consensus 78 ~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 78 EIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887766
No 22
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.33 Score=53.17 Aligned_cols=189 Identities=15% Similarity=0.165 Sum_probs=125.8
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-----HHcCCCCCCcc
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIF-----SAFGDKLLDST 148 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf-----~~l~~~~md~~ 148 (297)
+...++..-..+.+.|..|.+|..-|+......+...++.++-..+.---.--++|-.|+-.|. .-+|+ |+.
T Consensus 703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~---e~~ 779 (1176)
T KOG1248|consen 703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGN---EPA 779 (1176)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccc---cch
Confidence 3444566777888889999999998884444444444444444445555555667777777666 33444 231
Q ss_pred hhhHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH----HhcCc---hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 149 SDALDNLVLQLLM-KASQDKKFVCEEADRALNTMV----ESITP---LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 149 ~~~ld~ll~~LL~-Ka~~sn~FI~e~A~~AL~~Mv----~~~s~---~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.+.+.+.+..+-. =++++..-++.+ --|+..++ ..++. .+++..+..++...++.|+..+-.++-.+|..+
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 1122222222200 124444444443 33443333 33443 355666678999999999999999999999999
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
....+ ...++.|++.+..++.|..-.+|...|.++..|-+.|+-++
T Consensus 859 pe~~l-~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 859 PEECL-SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred CHHHH-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 85544 55589999999999999999999999999999999998654
No 23
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.65 E-value=0.052 Score=55.95 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=140.3
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|..+.-.|+++.=.....++..+-.++...|+.+.. ..-.|+-.++..+++-.-.+=|+|..|+|.+.+..|.++
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd---- 765 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD---- 765 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH----
Confidence 445566677777777778899999999999997763 566788899999999999999999999999999999832
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
-++.++..| |..+.- .|.-...|+....+.|.|--++|.|.+--...+..|+.-+.+.+...++.+|... +++
T Consensus 766 --vL~~LlnnL--kvqeRq--~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s-~dY 838 (975)
T COG5181 766 --VLDILLNNL--KVQERQ--QRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS-LDY 838 (975)
T ss_pred --HHHHHHhcc--hHHHHH--hhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH-HHH
Confidence 244444444 333333 3334455677778889999999999987778888999888888999999988432 344
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+.+.+...+.|.+|--|..|-..+.+|
T Consensus 839 -vy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 839 -VYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred -HHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 667889999999999999999998887765
No 24
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.61 E-value=0.053 Score=56.95 Aligned_cols=178 Identities=14% Similarity=0.176 Sum_probs=137.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|..+.-.|++..=..+..++..+-+++...|+.+. ...-.||-.++..+++-.-.+=|+|..|+|.+.+..|.++
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd---- 960 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD---- 960 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH----
Confidence 44555566666666667788899999999999775 3567788899999999999999999999999999999832
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
-++.++..| |..+. -.|.-...|+..+.+.|.|--+||.|..--...+..|+--+.+.++.+++.+|.- -+++
T Consensus 961 --VLatLlnnL--kvqeR--q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigem-skdY 1033 (1172)
T KOG0213|consen 961 --VLATLLNNL--KVQER--QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM-SKDY 1033 (1172)
T ss_pred --HHHHHHhcc--hHHHH--HhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH-hhhH
Confidence 234444443 33333 2333344566777788999999999998777888889988888899999998832 2334
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+.+.+...+.|.++--|+.|-.++.+|
T Consensus 1034 -iyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1034 -IYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred -HHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 567888888999999999999999888765
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.52 E-value=0.012 Score=45.84 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=59.6
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSA 139 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~ 139 (297)
.++.+++.+.+.+|..+..++..|..++...++.....+. .+++.+.+.+.+--+.|.+.|+.+++.|...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 4667788888899999999999999999976766655555 7888888888888899999999999999754
No 26
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.51 E-value=0.025 Score=42.41 Aligned_cols=83 Identities=27% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHh-ccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH
Q 022417 158 QLLMKA-SQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV 236 (297)
Q Consensus 158 ~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~ 236 (297)
.|+... .+.+..++..+-.+|. .....++++.|...++|.|+.||..++..|..+ | .+..++.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~--------~~~~~~~ 66 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G--------DPEAIPA 66 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H--------HHHTHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------CHHHHHH
Confidence 344444 4788999998888887 456678999999999999999999998766533 3 3455666
Q ss_pred HHHhccC-CCHHHHHHHHHHH
Q 022417 237 AAGLLND-RLPEAREAARSMV 256 (297)
Q Consensus 237 ~a~~l~D-~~pE~R~~aRk~l 256 (297)
+.+.+.| .+..+|..+-.++
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhc
Confidence 6666655 5566788776654
No 27
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.51 E-value=0.23 Score=52.74 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=130.9
Q ss_pred CcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 79 SKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
...|..+.+-+..+-.++..-- +++.+.+.+++. ..+.|.=.++-+.|..++..+...||. ... ...++.
T Consensus 490 d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~---~~l~d~v~~Ir~~aa~~l~~l~~~~G~-~w~-----~~~~i~ 560 (759)
T KOG0211|consen 490 DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLR---TWLPDHVYSIREAAARNLPALVETFGS-EWA-----RLEEIP 560 (759)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHH---hhhhhhHHHHHHHHHHHhHHHHHHhCc-chh-----HHHhhH
Confidence 3369999999999988886444 555666665554 345666667777888888999999995 555 557788
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
.+|.-.++++--.|-..-.++..++.-++ ...+++.+.....+.++.||-.+|++|..++..+..+.. -+.+
T Consensus 561 k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v 636 (759)
T KOG0211|consen 561 KLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEV 636 (759)
T ss_pred HHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHH
Confidence 88887788777777777777777666654 457888888899999999999999999999998875433 3567
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++.-.+..|.+.++|+.|-.++..+..
T Consensus 637 ~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 637 LPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7777777789999999999988877543
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=96.43 E-value=0.25 Score=52.55 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc-
Q 022417 107 LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI- 185 (297)
Q Consensus 107 L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~- 185 (297)
++.++..|.+.+.+...-|-|+|++|+..+|...+. .+... .+-+.+..|| .+++.-|...|-.+|..+.+..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~--~~~~~L~~LL---~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQ--DFKKDLVELL---NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-ccccc--chHHHHHHHh---cCCCccHHHHHHHHHHHHHHhCc
Confidence 456778889999999999999999999999987665 33211 1222222232 2455555555555554443321
Q ss_pred ------------------------------------C-----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 186 ------------------------------------T-----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 186 ------------------------------------s-----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
+ ...++..+.+.++|.|+.|--.+++++..+...++.+
T Consensus 212 ~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 212 EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 1 0135555667788999999999988888776554322
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+...-..++...+..+ ..++||+|+.+=+.+..+-..++
T Consensus 291 ~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 291 LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 2221133444444433 56789999999888777655443
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.43 E-value=0.15 Score=55.22 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChh--hhh---------------HHHHHH----HHHHHHHhcCcchHHHHH
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSS--LLE---------------PNLEKV----MAVVVKAMKNPRSALCKT 128 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e--~l~---------------~~L~~i----~~~v~~~vknLRS~Vsk~ 128 (297)
+..+...|+++||..+..|+..|.++....+. .+. ..|..+ ...+++.+++..-.|-++
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~ 733 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHH
Confidence 34455556667777777777777666432110 110 001110 123344555555555555
Q ss_pred HHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHH
Q 022417 129 SIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 129 A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~ 208 (297)
|+.+++.+ +. .+ .|+.-..+.+..||..+..+|..+-.. ....++.|...+++.++.||..
T Consensus 734 Av~aL~~~----~~---------~~----~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 734 AVRALVSV----DD---------VE----SVAGAATDENREVRIAVAKGLATLGAG--GAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHHHHhcc----cC---------cH----HHHHHhcCCCHHHHHHHHHHHHHhccc--cchhHHHHHHHhcCCCHHHHHH
Confidence 55555542 11 01 122223455666666666666555221 1123455555566666666666
Q ss_pred HHHHHH
Q 022417 209 AAISIS 214 (297)
Q Consensus 209 aA~~L~ 214 (297)
++..|.
T Consensus 795 A~~aLg 800 (897)
T PRK13800 795 ALAALA 800 (897)
T ss_pred HHHHHH
Confidence 665553
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.31 E-value=0.023 Score=44.31 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhcc
Q 022417 157 LQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELG 229 (297)
Q Consensus 157 ~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~ 229 (297)
..|+....+.+..+++.+-.+|..|+.+.. ...+++.|...+.+.++.+|..++..|.+++..-. .......
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHHHH
Confidence 333333445667899999999998886521 22577888888889999999999999999987532 2211111
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...+++.+.+++.+.+.++|..+-.++..|
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 223677777788888999998887777654
No 31
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.21 E-value=0.014 Score=40.71 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 022417 82 WTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI 136 (297)
Q Consensus 82 W~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dL 136 (297)
|..|..|+..|-+++...++.+.+.+.++++.+...++|..+.|-.+||-++|.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
No 32
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.13 E-value=0.058 Score=42.85 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh
Q 022417 84 NVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA 163 (297)
Q Consensus 84 ~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka 163 (297)
.|..||.-|...++.-++.+...+.+|++.|+..+.+--+-|=-.||.++..+.+..+. .+-+ .+.+++..|.+-.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~---~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILP---YFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHH
Confidence 36789999999999888889999999999999999999999999999999999999888 4433 3788887777776
Q ss_pred ccccHHHHHHH
Q 022417 164 SQDKKFVCEEA 174 (297)
Q Consensus 164 ~~sn~FI~e~A 174 (297)
.|.+.=|+..|
T Consensus 78 ~D~d~~Vr~~a 88 (97)
T PF12755_consen 78 ADPDENVRSAA 88 (97)
T ss_pred cCCchhHHHHH
Confidence 77655555555
No 33
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.41 Score=50.72 Aligned_cols=165 Identities=20% Similarity=0.169 Sum_probs=116.5
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
++...|+|++=..++||++.|-.+..+..+ ...+.+.|+|.|.+=.+.|-|---.-+--..+ .+|.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE------eqpd--- 104 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE------EQPD--- 104 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh------cCCC---
Confidence 566678888889999999988777775544 56667788888887777777754333322222 2222
Q ss_pred HHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccH
Q 022417 152 LDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGL 230 (297)
Q Consensus 152 ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~ 230 (297)
+--+-..-++|+ +|.|.-||..|-++|..|=-.+-.+-++.++..++.+-++.||+++|-.+-.|-. ++++ ..
T Consensus 105 LALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e-----~k 178 (968)
T KOG1060|consen 105 LALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPE-----QK 178 (968)
T ss_pred ceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChh-----hH
Confidence 111223455666 5689999999999999886666566677777889999999999999876554432 2221 14
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 231 VSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 231 ~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
+.+++.+.+++.|.+|-|--+|=-+|
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 69999999999999999877665444
No 34
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.90 E-value=0.35 Score=48.45 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=93.9
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
.|-..+..||..||.+..+.|..|...-+..+--++.+-+|.--.|.+.|-.++..+...+-. . ..+..+.+.+
T Consensus 342 ~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P-----~-~~I~~i~~~I 415 (516)
T KOG2956|consen 342 EDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP-----L-QCIVNISPLI 415 (516)
T ss_pred hhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-----h-hHHHHHhhHH
Confidence 444455567778888888888888776677777778888888899999998887777655433 1 0244444333
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
|. .|.. +.-.+-+.+-.|++.++-. .+.|.+..+..+-+..||.++..||..++.++|.+.+..
T Consensus 416 lt--~D~~--~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 416 LT--ADEP--RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred hc--Ccch--HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 33 3332 2223344555666666643 344555678889999999999999999999999766543
No 35
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.74 E-value=0.17 Score=43.08 Aligned_cols=96 Identities=17% Similarity=0.305 Sum_probs=77.1
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND-RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D-~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+||.|...+..+|..|++.-|..-..+..-..+++.+.+++.+ .+++||.-...++......|.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3557888888888999999999999999999999996554445567888889999988 899999999999999999998
Q ss_pred cchh--hhHHHHHHHHHhc
Q 022417 265 ENEE--HKQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~--~~~~~~~~~~~~~ 281 (297)
...+ .-.+.|+.+-.+-
T Consensus 114 ~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 114 NDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred CCcccHHHHHHHHHHHHcC
Confidence 5542 1246666665443
No 36
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.84 Score=48.51 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=107.4
Q ss_pred cCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHcCCCCCCcchhhHHHH
Q 022417 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIF-SAFGDKLLDSTSDALDNL 155 (297)
Q Consensus 77 L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf-~~l~~~~md~~~~~ld~l 155 (297)
+.|.+=.++++|++.+=+-..+.-+ +..+...|++.+. .|.-=-|- +-.+| ..+.+ ..|+ ..--.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~-trd~ElKr----L~ylYl~~yak--~~P~--~~lLa 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVA-TRDVELKR----LLYLYLERYAK--LKPE--LALLA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHH-hcCHHHHH----HHHHHHHHHhc--cCHH--HHHHH
Confidence 7788888999999866554443333 5566666666666 44432222 22333 23333 3332 23344
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHH
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ 235 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~ 235 (297)
+...++-..+.|.+||--|=++|..|=..-=-..+++.|...+.|+++.||+.+|.++..+.+. +.+-..+-| +..
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g---~~~ 169 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELG---LID 169 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhccc---HHH
Confidence 5555555567999999999998877632222335566677899999999999999999988764 222222222 444
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 236 VAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 236 ~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
....++.|.+|.|-..|-..+..++..
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 455667899999988887776666554
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.099 Score=54.32 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=77.8
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc--
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN-- 266 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~-- 266 (297)
-++|.+....+|-||.+|+.+..|+...+-..... +-..++++++.+-.+.+|-+||||..-=+++..|-+...+.
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 35899999999999999999988888777654422 22348999999999999999999999999988887666553
Q ss_pred ------------------hh---hhHHHHHHHHHhcCChhhHHHH
Q 022417 267 ------------------EE---HKQEAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 267 ------------------~~---~~~~~~~~~~~~~l~~~~a~~~ 290 (297)
++ +.-|=|-+|+...+++..-+.-
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 11 3457899999888777655443
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.56 E-value=1.7 Score=44.05 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH--HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC--CC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL--EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK--LL 145 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L--~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~--~m 145 (297)
...+..+|.+.+=..+.-+++.|+|++.+... ....+ ++++..|+..+.+.-..|++.|+.++..|+..-..- .+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 34555778888878888999999999975544 33322 678899999999999999999999999998642110 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-------HhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMV-------ESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv-------~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
++. +...+..++.+. +.-+|-.+-..+..+. +.|...-+++.+...+++.-..|+..+..+|..+.+
T Consensus 158 ~~~---~~~~L~~l~~~~---~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 158 DSN---LLSKLKSLMSQS---SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred Ccc---hHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 211 233344444332 3333322222222221 111122367777888888999999999999999987
Q ss_pred h-hCchhhhhc-cHHHHHHHHHHhccCC-CHHHHHHHH
Q 022417 219 K-MGLEGMKEL-GLVSLVQVAAGLLNDR-LPEAREAAR 253 (297)
Q Consensus 219 ~-~g~~~l~~~-~~~~ll~~~a~~l~D~-~pE~R~~aR 253 (297)
. .|..-+... .++++...+...-.|. .....-.|+
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3 333333333 3677777777776666 555555555
No 39
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.21 E-value=2.4 Score=40.41 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCcc-hHHHHHHHH-HHHHHHHHcCCCCCCcch---hhHHHHHHHHHHHhccc--------cHHHH
Q 022417 105 PNLEKVMAVVVKAMKNPR-SALCKTSIM-AASDIFSAFGDKLLDSTS---DALDNLVLQLLMKASQD--------KKFVC 171 (297)
Q Consensus 105 ~~L~~i~~~v~~~vknLR-S~Vsk~A~~-tl~dLf~~l~~~~md~~~---~~ld~ll~~LL~Ka~~s--------n~FI~ 171 (297)
..+..+.+.+.+.+.+-. +.-.|.+|. |+|-++-..+. ..+-.. +.++.+......|.... +.-|.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 345566677777777654 444667776 55555444344 444221 12222222222232221 24577
Q ss_pred HHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh--hhhccHHHHHHHHHHhcc
Q 022417 172 EEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 172 e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~--l~~~~~~~ll~~~a~~l~ 242 (297)
.+|=.+-..++..++.. ..++.|...+.+.+..||..+.+.|.-+.+...... ....+.+.+++.+..+..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 77777778888888772 355666778889999999999999999999766321 122358899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 022417 243 DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 243 D~~pE~R~~aRk~l~~L~~~~ 263 (297)
|+ .+..+|+=-...+..|
T Consensus 284 dS---~K~~sKkdrk~qRs~F 301 (309)
T PF05004_consen 284 DS---SKSRSKKDRKQQRSSF 301 (309)
T ss_pred hc---cCccchhHHHHHHHHH
Confidence 97 4555665555555544
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.14 E-value=0.097 Score=39.13 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=61.6
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|+.+++.| ++.||..+..++..|.++ +. .++++.+...+++.-..|.++|+.+++.+ |.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~------ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GD-------PEAIPALIELLKDEDPMVRRAAARALGRI----GD------ 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---TH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC------
Confidence 35677888 899999999988777633 22 25677777788999999999999999976 22
Q ss_pred hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ-DKKFVCEEADRALN 179 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~ 179 (297)
+..+..|.....+ .+.+++..|..||.
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2233444443444 45778999988874
No 41
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.94 E-value=0.86 Score=37.85 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=65.4
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND---RLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D---~~pE~R~~aRk~l~~L~~~ 262 (297)
.+..++.+|...++|+||.+...+..+|..|++.-|..-....+-..++..+.+++.. .++++|.-...++......
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667889999899999999999999999999999886544444444444446667765 5889999999999999999
Q ss_pred hccc
Q 022417 263 FTEN 266 (297)
Q Consensus 263 ~~~~ 266 (297)
|+.+
T Consensus 114 f~~~ 117 (133)
T cd03561 114 FGGH 117 (133)
T ss_pred hcCC
Confidence 9875
No 42
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.78 E-value=5 Score=42.80 Aligned_cols=190 Identities=16% Similarity=0.314 Sum_probs=128.8
Q ss_pred CCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---cCCCCCCc------
Q 022417 78 DSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA---FGDKLLDS------ 147 (297)
Q Consensus 78 ~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~---l~~~~md~------ 147 (297)
.|. .|+.+-.|++.+.+++++----+.++|..++..|...+++=--.|=--+..+++.+|+. ||-..||.
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLw 600 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLW 600 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 455 89999999999999998766666677777777776666653222222233333333332 33222222
Q ss_pred ---------------------------c--------------------hhhHHHHHHHHHHHhcc----ccHHHHHHHHH
Q 022417 148 ---------------------------T--------------------SDALDNLVLQLLMKASQ----DKKFVCEEADR 176 (297)
Q Consensus 148 ---------------------------~--------------------~~~ld~ll~~LL~Ka~~----sn~FI~e~A~~ 176 (297)
+ .+++..++...+++.++ +-.|++++.-.
T Consensus 601 kgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp 680 (1172)
T KOG0213|consen 601 KGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILP 680 (1172)
T ss_pred HHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhH
Confidence 1 34566677777777765 45677666432
Q ss_pred -----------------------HHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh------
Q 022417 177 -----------------------ALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE------ 227 (297)
Q Consensus 177 -----------------------AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~------ 227 (297)
+--.+++.+.....+..+..-.++-+++-|..++..+.+++.++|...+-+
T Consensus 681 ~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~l 760 (1172)
T KOG0213|consen 681 EFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERL 760 (1172)
T ss_pred HHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 334667777778888888888889999999999999999999887533211
Q ss_pred ---------------------cc-------------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 228 ---------------------LG-------------LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 228 ---------------------~~-------------~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
|| +..|..++...|+..+|.+|..|-.++..+-..+..-.
T Consensus 761 idgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ 834 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG 834 (1172)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc
Confidence 11 35677778888999999999999999888776665443
No 43
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=4.8 Score=45.70 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=102.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHH---HHHHHHHHcCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIM---AASDIFSAFGDKL 144 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~---tl~dLf~~l~~~~ 144 (297)
.+++++.++.+..|..|..+..-|+-|..-|| +.+...+.++-..+...|+|..=+|=.+|-. +++.++-..++ .
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d-~ 1118 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD-V 1118 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c
Confidence 35567778889999999999999999998887 4566789999999999999988888766544 45555555554 2
Q ss_pred CCcc--hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcC------chhHHHHHHhhccCCCHHHHHHHH
Q 022417 145 LDST--SDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESIT------PLPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 145 md~~--~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s------~~kll~~L~~~~~hKn~~VR~~aA 210 (297)
-.+. -+.++.+++-||.+..- +-+=||..+-.++.-|+++-+ -+++++.|....+.-.+.|--+++
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence 2221 34588888888887754 457788888888888888854 257888887766666666644443
No 44
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=1.7 Score=44.65 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 106 NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 106 ~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
-++.+++.|..+..+.-++|---||..+-.+.+..+...+. . ++++..+|=+=.+++..-++..| .-|+-.++-+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~---Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdI 155 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-Y---FNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDI 155 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-c---hHHHHHHHHHHhcCCccccccHH-HHHHHHHHHh
Confidence 48899999999999999999999999999999998884444 3 66666665444455554454443 3344444332
Q ss_pred --------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 186 --------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 186 --------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
+-...+|.|.......||..|.....|+..+-..-+ -.+.++ ++.+++.+-.+++|.++|+|...-.++.
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 224578888777777899999999999987765533 223344 8999999999999999999987777665
Q ss_pred HHHHH
Q 022417 258 SMYNA 262 (297)
Q Consensus 258 ~L~~~ 262 (297)
.+-..
T Consensus 234 ~fL~e 238 (675)
T KOG0212|consen 234 EFLAE 238 (675)
T ss_pred HHHHH
Confidence 54333
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=3.5 Score=44.37 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=134.7
Q ss_pred cccHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChh-hhhH-HHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCC
Q 022417 67 ESMIPCLIEGLDSK-DWTNVCESLNNARRFALHHSS-LLEP-NLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 67 e~~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e-~l~~-~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+..++.++.+|..+ |=..++++|..+=.+.....| .+.. -+..+++.++..++ .-.=-+--.||.|+..||..|..
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34578899999777 999999999999888866554 3332 35666776666655 12256777999999999999998
Q ss_pred CCCCcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCchhHHH-----HHHhhccCCCHHHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITPLPLLQ-----KLKTYVKHTNPRIRAKAAISISIC 216 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~~kll~-----~L~~~~~hKn~~VR~~aA~~L~~~ 216 (297)
...-..+ ...++.|+.|..- .=-=++|.+-.||..+ ....|.-+|. +.+.|..=-+.-+++.+--...||
T Consensus 246 -S~a~vV~--~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i-SR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 246 -SSAIVVD--EHAIPVLLEKLLTIEYIDVAEQSLQALEKI-SRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred -hhheeec--ccchHHHHHhhhhhhhhHHHHHHHHHHHHH-HhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443211 1256666666543 2111344444444433 2234444443 334566667777888888889999
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcC
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNL 282 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l 282 (297)
|+.+..+.. +| +-..++.+..+++-.+-..-++.--++..+-+.|.. +.+.++++|.--|
T Consensus 322 Cksi~sd~f-~~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h----~~~kLdql~s~dL 381 (1051)
T KOG0168|consen 322 CKSIRSDEF-HF-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH----GPDKLDQLCSHDL 381 (1051)
T ss_pred HhcCCCccc-hH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc----ChHHHHHHhchhH
Confidence 999987642 22 455677777788777777777777777777776654 4477777776544
No 46
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.33 E-value=0.77 Score=38.86 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=73.2
Q ss_pred cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 022417 185 ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 185 ~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~ 263 (297)
..+..++.+|..-++|+|+.|...+..+|..|++.-|..-.....-..+++.+.+++. ..+++||.-...++......|
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 3466788999989999999999999999999999988654444444666666666665 578899999999999999999
Q ss_pred ccchh--hhHHHHHHHHHh
Q 022417 264 TENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~ 280 (297)
....+ .-.+.|+.+-.+
T Consensus 117 ~~~~~l~~i~~~y~~L~~~ 135 (142)
T cd03569 117 RNKPQLKYVVDTYQILKAE 135 (142)
T ss_pred CCCcccHHHHHHHHHHHHc
Confidence 76543 233666666544
No 47
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=4.9 Score=44.47 Aligned_cols=180 Identities=11% Similarity=0.139 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHHhh--ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALH--HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQ 158 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~--h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~ 158 (297)
+=..+-.+...|+.|... ..-.....+..|...+.+.+.+.-+..-+.++.|+.-|++.++. ..... +...++-
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-e~~~~---i~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-EHCDL---IPKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-HHHHH---HHHHHHH
Confidence 445566777788888876 11233467888888999999999999999999999999999986 33322 4444443
Q ss_pred HHHHhccccHHHHHHHHHHHHHHH--HhcC-----c-----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 159 LLMKASQDKKFVCEEADRALNTMV--ESIT-----P-----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 159 LL~Ka~~sn~FI~e~A~~AL~~Mv--~~~s-----~-----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++.-..+-|.--+..|-.+|..|. +... | ...+..|..|.-..++.++.+.-.-+..++...+ ..+.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-NILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 333335566677888888888887 3221 1 2355566667777788888776444555555443 1222
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.--++.+++.+.-+|..+++|+|.+|=..+..+-..|+.
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 223799999999999999999999999999988777764
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=2.7 Score=44.60 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=120.3
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHH-cCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcCch--
Q 022417 113 VVVKAMKNPRSALCKTSIMAASDIFSA-FGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESITPL-- 188 (297)
Q Consensus 113 ~v~~~vknLRS~Vsk~A~~tl~dLf~~-l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s~~-- 188 (297)
.+...+.++--..+-.|-+|++.+... +.. . .-++++..|....++.. .-+.+..-.||..||+++.|.
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-n------~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl 166 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIELPQ-N------QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL 166 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhhCch-h------hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH
Confidence 455566666566666778888888753 333 1 23567777777787743 369999999999999999985
Q ss_pred -----hHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 189 -----PLLQKLKTYVK--HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 189 -----kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++.++..|.. ..+..||-++-.+|.++++-.+..--.+..++-+++.+....+..+.++|.+|-.+|..+-.
T Consensus 167 ~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 167 EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 34555666653 68899999999999999997764333455688999999999999999999999999888655
Q ss_pred Hhccc---------------------hh---hhHHHHHHHHHhcC
Q 022417 262 AFTEN---------------------EE---HKQEAWQSFCQSNL 282 (297)
Q Consensus 262 ~~~~~---------------------~~---~~~~~~~~~~~~~l 282 (297)
.|.+. +| ++-|=|.++|.+-.
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi 291 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI 291 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 55432 11 46688888887654
No 49
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.12 E-value=2.1 Score=36.93 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPR-SALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~ 142 (297)
.+...|.|+++..+..|+..++-++... ++.|...-..-+..+.+.+++.- -.+-+.||.++++||...++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445668999999999999999999987 88887777778887777777533 34667899999999987665
No 50
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.03 E-value=2.6 Score=49.56 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=122.2
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..+++.|++.+=+.+..|+..++-|+..+.+.-... =...++.+++.+.+....+.++|+-+++.|... .. ....
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~-qir~ 524 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SE-DIRA 524 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cH-HHHH
Confidence 35566666777777788888888888887665432211 134677888888899999999999999999852 11 1100
Q ss_pred chhhH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 148 TSDAL--DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 148 ~~~~l--d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
.+ ..+++.|+.-..+.+.-+.+.|-.||..++.+. ....++.|...+.+.++.+...+...+.+++...+...+
T Consensus 525 ---iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 525 ---CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred ---HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 01 022333333223344556788999998887654 345567777778889999998888888777764433221
Q ss_pred hhcc--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 226 KELG--LVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 226 ~~~~--~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
...+ ...-++.+.+++..+++++++.|-.++..++.
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1111 13456667777888899999888766655543
No 51
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.02 E-value=0.51 Score=37.09 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=65.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
..++.++..|.+..=--|..||..||+|+..+. .-...++.+...+...+++.-|-|==+|+.+++.|...+++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 467889999999999999999999999999777 33345788999999999999999999999999999988766
No 52
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.99 E-value=0.13 Score=31.96 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
++|.|...+++.++.||..++.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999888764
No 53
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.92 E-value=1 Score=37.52 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=69.0
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL--PEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~--pE~R~~aRk~l~~L~~~~~ 264 (297)
+..++..|..-++|+||.+...+..+|..|++.-|..-.....-..+++.+.+.+.+.. +++|.-...++......|.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 55678888888999999999999999999999988654444455667777777776644 4589999999999999997
Q ss_pred cchh--hhHHHHHHH
Q 022417 265 ENEE--HKQEAWQSF 277 (297)
Q Consensus 265 ~~~~--~~~~~~~~~ 277 (297)
...+ .-.+.|+.+
T Consensus 115 ~~~~~~~i~~~y~~L 129 (133)
T smart00288 115 NDPDLSQIVDVYDLL 129 (133)
T ss_pred CCCCchHHHHHHHHH
Confidence 6443 233555544
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.74 E-value=4.2 Score=38.21 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=95.8
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..+.+.+|..+..+...+..+ ...+.++.+...+.+....|-..|..+ +|+ .-++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~a-------Lg~-~~~~ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADA-------LGE-LGDP 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHH-------HHc-cCCh
Confidence 4778888899999999999888662222 246677788888888777777777774 444 2232
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHH------------HHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPR------------IRAKAAISISI 215 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~------------VR~~aA~~L~~ 215 (297)
. .++.++.. |.+ +.+.++|..+..+|..+- ..+.+..|...+++.+.. +|..++.-+
T Consensus 105 ~--a~~~li~~-l~~--d~~~~vR~~aa~aL~~~~----~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l-- 173 (335)
T COG1413 105 E--AVPPLVEL-LEN--DENEGVRAAAARALGKLG----DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL-- 173 (335)
T ss_pred h--HHHHHHHH-HHc--CCcHhHHHHHHHHHHhcC----chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH--
Confidence 2 23333332 222 799999999999998773 334455555555555532 333222211
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
-..+.+.....+..++.|.+..+|..+-.++..+.
T Consensus 174 ----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 174 ----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred ----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 12344555666666677777777777766665543
No 55
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.67 E-value=0.7 Score=38.69 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=64.8
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPE----AREAARSMVNSMYNA 262 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE----~R~~aRk~l~~L~~~ 262 (297)
+..++..|...++|+||.+...+..+|..|++.-|..-....+-..++..+.+++.+.... ||+-...++......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999998865544555567777788777654332 899999999999999
Q ss_pred hccch
Q 022417 263 FTENE 267 (297)
Q Consensus 263 ~~~~~ 267 (297)
|....
T Consensus 120 f~~~~ 124 (140)
T PF00790_consen 120 FKSDP 124 (140)
T ss_dssp TTTST
T ss_pred HCCCC
Confidence 95544
No 56
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=2.2 Score=43.90 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=140.1
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhh----hHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLL----EPNLEKVMAVV-VKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l----~~~L~~i~~~v-~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..+|.++-++++..|--.+.++++ +.+ ...+.+++..+ ..-+.++-+-.-|-+++.++...-.+|. +-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk---~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~-~~~ 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVK---DLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGI-KDA 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHH---HHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcc-ccH
Confidence 45577888889999999999999987 223 25677888744 4445567777888999999999999999 433
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
+ .+..++++.+.--+|..-=||--|..+|..+++-+-. ..+...|+....+-.+.||. .|.++.++++.+
T Consensus 80 ~---Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdI 155 (675)
T KOG0212|consen 80 G---YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDI 155 (675)
T ss_pred H---HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHh
Confidence 3 5888999999888888888888888899888776643 24556666666666666765 678999999987
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
-.+.-..|.++.+++.+..=+.+-+|.+|.+-=.=+..|+.
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds 196 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS 196 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Confidence 76665568899999999999999999999987655555443
No 57
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.49 E-value=5.5 Score=43.44 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC---chhHHHHHHhhc
Q 022417 122 RSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT---PLPLLQKLKTYV 198 (297)
Q Consensus 122 RS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s---~~kll~~L~~~~ 198 (297)
=|++-.+.|--++|+...||. .+..+ -..++..|+...++.-.-||.-|-.+|..+..+|+ ...++..|..++
T Consensus 146 ~sai~~e~lDil~d~lsr~g~-ll~~f---h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L 221 (1233)
T KOG1824|consen 146 VSAIKCEVLDILADVLSRFGT-LLPNF---HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGL 221 (1233)
T ss_pred chhhHHHHHHHHHHHHHhhcc-cCcch---HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 345667788889999999999 66544 34555566666667778899999999999999998 458899998876
Q ss_pred cC--CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHH
Q 022417 199 KH--TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLL---NDRLPEAREAARSMVNSM 259 (297)
Q Consensus 199 ~h--Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l---~D~~pE~R~~aRk~l~~L 259 (297)
.. ++..+|. .-++|..++...|.+ .+..++++++.++++. +..+-|.|++.-+++-.+
T Consensus 222 ~~~~q~~~~rt-~Iq~l~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 222 SNRTQMSATRT-YIQCLAAICRQAGHR--FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred CCCCchHHHHH-HHHHHHHHHHHhcch--hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 53 4445554 457888888887743 2334899999999999 888999999988887654
No 58
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.39 E-value=0.15 Score=35.26 Aligned_cols=53 Identities=26% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 203 PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 203 ~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
|.||..++..|.++.+..+ +.+ ......+++.+..+++|.+++||..|=.++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccH-HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5789989888877444322 222 2237899999999999999999999876654
No 59
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.23 E-value=1.5 Score=37.05 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=62.7
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
+...+.+|..-++|+|+.|...+-.+|..|++.-|..--.......++.-+.+++.+ ..++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999999996543344445666666666653 57899999999999999
Q ss_pred HHhcc
Q 022417 261 NAFTE 265 (297)
Q Consensus 261 ~~~~~ 265 (297)
..|.+
T Consensus 116 ~~f~~ 120 (139)
T cd03567 116 LELPH 120 (139)
T ss_pred HHhcc
Confidence 99974
No 60
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.94 E-value=1.5 Score=38.81 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=91.8
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH---HHHcCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI---FSAFGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dL---f~~l~~~ 143 (297)
.-|.-++++|...+=--++=|...+..|..+ .++-+.+.+++++..+...+.+--..|.+.++.++..| ....|.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~- 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE- 116 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH-
Confidence 4577999999999888889999999999998 88999999999999999999999999999999999999 555665
Q ss_pred CCCcchhhHHHHHHHHH--H-Hh---c-----cccHHHHHHHHHHHHHHHHhcCch
Q 022417 144 LLDSTSDALDNLVLQLL--M-KA---S-----QDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL--~-Ka---~-----~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
.+-|. ...++++|= + |. + ...+=+++-.+.+|..+-++..+.
T Consensus 117 aLvPy---yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPY---YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHH---HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 55543 555554442 1 11 1 234667888888888887777654
No 61
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.94 E-value=5.9 Score=41.99 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=117.3
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+..++.++.++|=..++..|..|++|.....+.=...+..+...+..-+.+--+.|=.+|..+++.+= |. .-|++
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---~d-~~dee 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---GD-PKDEE 161 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---cC-CCCCc
Confidence 456778888999999999999999999985554444556777778888888888888889988887654 23 44443
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
. .+..++..|+. .|.+. +..+|...|+ .....-+|.+..-+.+-+..+|+.+- ..|++++. +...
T Consensus 162 ~-~v~n~l~~liq--nDpS~----EVRRaaLsnI--~vdnsTlp~IveRarDV~~anRrlvY---~r~lpkid---~r~l 226 (892)
T KOG2025|consen 162 C-PVVNLLKDLIQ--NDPSD----EVRRAALSNI--SVDNSTLPCIVERARDVSGANRRLVY---ERCLPKID---LRSL 226 (892)
T ss_pred c-cHHHHHHHHHh--cCCcH----HHHHHHHHhh--ccCcccchhHHHHhhhhhHHHHHHHH---HHhhhhhh---hhhh
Confidence 1 24455544433 23333 3333332222 23446678888888888899998764 34556652 2233
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..++-+..+-.+++|+.-.+|.+..+++..
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 467888888889999999999888887764
No 62
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=3.3 Score=41.93 Aligned_cols=183 Identities=18% Similarity=0.147 Sum_probs=124.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..+.....|..|+.++.....+-.+.. |..+. +.|..++..+..-.+++-..+-.-||.+++.++.....+.+..
T Consensus 219 l~q~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th 296 (533)
T KOG2032|consen 219 LAQLLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH 296 (533)
T ss_pred HhhcccccchhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh
Confidence 4444555567789999988776666553 44454 7789999999999999999999999999999998766645554
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHH-------hhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLK-------TYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~-------~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
-...+|.++.+|.. +.|.=|.-++-.+|..++...+.-.+.+.+. .-..+-++.+|..+-.++..+.+.-
T Consensus 297 ~~~~ldaii~gL~D---~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 297 KTTQLDAIIRGLYD---DLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 44457778877754 3445566667777777777666544444332 2445778888887777777776665
Q ss_pred CchhhhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGL---LNDRLPEAREAARSMVNS 258 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~ 258 (297)
|.. -..+-.+.+.+..+.| ++|.+|-+=.+-|..+..
T Consensus 374 g~~-~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 374 GGG-WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred CCC-chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 533 2333356666555555 489999666665555444
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.28 E-value=16 Score=40.13 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=127.2
Q ss_pred HHHhccCCcCHHHHHHHHHHHH-HHHhhChhhh-hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 72 CLIEGLDSKDWTNVCESLNNAR-RFALHHSSLL-EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LR-rLa~~h~e~l-~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
.+++.+.|.|=-=|+=|.+.|- +|-+ ..-.+ .....+++..+++.+.+-.-.|.-.|+.|+|-|.+..+.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqk-dsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~------ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQK-DSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED------ 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHh-hhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH------
Confidence 5677777776666666766553 2322 22112 3567899999999999999999999999999999665552
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-----------hhHHHHHHhhc--cCCCHHHHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-----------LPLLQKLKTYV--KHTNPRIRAKAAISISIC 216 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-----------~kll~~L~~~~--~hKn~~VR~~aA~~L~~~ 216 (297)
.+..++..|..+....+.=.|+-..-+|..|+.+++| .++++.|..+. +.-.-.|+.-+...+...
T Consensus 82 -~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 82 -QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred -HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 3677888888887778888888999999999999987 23445554332 234445777777778888
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+.+.|. -+-.| +..++.++.--+...-.-+|.-|=.++..|-....
T Consensus 161 lsr~g~-ll~~f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 161 LSRFGT-LLPNF-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHhhcc-cCcch-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 888773 22223 56677777666666666677666666666655443
No 64
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.27 E-value=10 Score=35.61 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=101.6
Q ss_pred HHHHH-hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLI-EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l-~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++ -.+.+.|=.-|..|+..+--.+....+.-...+.-+...+ .+=...|.-.|+.++.|+...+|...++..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 44444 4667888788999988887777777766555555554444 222788889999999999999998666654
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh--hCchhhh
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK--MGLEGMK 226 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~--~g~~~l~ 226 (297)
... + .......++..+..++.+-++.+|..+++.+..++-. +.+
T Consensus 104 ~~~--------------~----------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---- 149 (298)
T PF12719_consen 104 SDN--------------D----------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---- 149 (298)
T ss_pred hcc--------------C----------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----
Confidence 110 0 3344455677777777777999999999888887642 332
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
...++..+.-.--+..-+--..-|+++..++.+|.....
T Consensus 150 ---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 150 ---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred ---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 122222222111111111223678888889998877653
No 65
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.27 E-value=1.4 Score=45.50 Aligned_cols=188 Identities=17% Similarity=0.127 Sum_probs=99.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh---HHH------------------------HHHHHHHHHHhcCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE---PNL------------------------EKVMAVVVKAMKNP 121 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~---~~L------------------------~~i~~~v~~~vknL 121 (297)
.+..+-.-|++..-..++.|+..|-+|+...|+.+. ..+ .+.+..+++.|-+.
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 444455567888999999999999999987775432 111 11222222222222
Q ss_pred chHHH----HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc-cc-----------HHHHHHHHHHHHHHHHhc
Q 022417 122 RSALC----KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ-DK-----------KFVCEEADRALNTMVESI 185 (297)
Q Consensus 122 RS~Vs----k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~-sn-----------~FI~e~A~~AL~~Mv~~~ 185 (297)
=+-+| .-++-++--|+-.|.. ..+. .++-+...|+.+.+- -+ .|+-+.-++||..+|+.+
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~-k~~s---~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI 459 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPS-KKLS---YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI 459 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcH-HHHH---HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 22222 2233333333333333 2222 355566666654432 22 333455567777777664
Q ss_pred ---Cch----hHHHHHH-hhccCCCH--HHHHHHHH-HHHHHHHhhCc-hhhhhc--------cHHHHHHHHHHhccCCC
Q 022417 186 ---TPL----PLLQKLK-TYVKHTNP--RIRAKAAI-SISICVTKMGL-EGMKEL--------GLVSLVQVAAGLLNDRL 245 (297)
Q Consensus 186 ---s~~----kll~~L~-~~~~hKn~--~VR~~aA~-~L~~~v~~~g~-~~l~~~--------~~~~ll~~~a~~l~D~~ 245 (297)
... +++..|- .|-+.++| -||--.-+ .|.+-+-+.++ ..+..| --..+..++.+|++|++
T Consensus 460 EDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~D 539 (898)
T COG5240 460 EDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQD 539 (898)
T ss_pred hhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhccc
Confidence 433 4555553 35555555 23321111 11111112111 111122 24788889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022417 246 PEAREAARSMVNSMY 260 (297)
Q Consensus 246 pE~R~~aRk~l~~L~ 260 (297)
-|+|+-|--++..++
T Consensus 540 deVRdrAsf~l~~~~ 554 (898)
T COG5240 540 DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999987777665
No 66
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=5.8 Score=45.10 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=114.9
Q ss_pred ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc-----------------------chHHHHHH--H
Q 022417 76 GLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP-----------------------RSALCKTS--I 130 (297)
Q Consensus 76 ~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL-----------------------RS~Vsk~A--~ 130 (297)
++-|+==+.+-=+++++-.|+++.+..+.+.++++++.+......+ |-+.+|+. +
T Consensus 1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence 3345555667778999999999999999998888888776655444 44333332 2
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHH---HHHhcc------ccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccC
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQL---LMKASQ------DKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKH 200 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~L---L~Ka~~------sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~h 200 (297)
.|+.++-.+... +.++++++.+ +.+.-. ...||+--+.+....| .+ ..+++.++.+|.++
T Consensus 1219 eTi~~ci~~iD~-------~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em---tP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1219 ETINKCINYIDI-------SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM---TPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred HHHHHHHHhhhH-------HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc---CcchhHHHHHHhhcccc
Confidence 233333322221 1244555444 333311 3578887777744444 23 25999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCH------------------HHHHHHHHHHHHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLP------------------EAREAARSMVNSMYNA 262 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~p------------------E~R~~aRk~l~~L~~~ 262 (297)
||..||+..|..+-.+++--.++... .-+...++.++.+.++ .-.+|+..++-..+=+
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLA 1364 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 99999999998888877765443321 1122222333333222 2223344333322222
Q ss_pred hccchhhhHHHHHHHHHhcCChhh
Q 022417 263 FTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
....+++.++-|..|-+...|...
T Consensus 1365 ~~ee~Ka~q~Lw~dvW~e~vsgga 1388 (1702)
T KOG0915|consen 1365 MHEEEKANQELWNDVWAELVSGGA 1388 (1702)
T ss_pred HhHHHHHHHHHHHHHHHHhCCCCc
Confidence 222234677889888888777653
No 67
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=91.84 E-value=13 Score=37.69 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=118.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh--hhhh--HHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHcCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS--SLLE--PNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~--e~l~--~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l~~ 142 (297)
.+..++..|+++|=-.+..++..+..|+.++. +.+. +.+..++..+...-.|+ ++-+.=-.+...|.++..-..
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 46677888999999999999999999998322 3332 45666777666666666 443333333444444443111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH-H--------HH---HhhccCCCHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL-Q--------KL---KTYVKHTNPRIRAKAA 210 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll-~--------~L---~~~~~hKn~~VR~~aA 210 (297)
.+ .+....++..|+....+...-++..|=.|+..+..+.....+| . .| ....++-...+|.++-
T Consensus 283 -~v---~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 283 -EV---LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred -HH---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 11 1123444444454444567778888899999887666666655 1 12 2345566667899898
Q ss_pred HHHHHHHHhhCc---hhhh---h--c---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 211 ISISICVTKMGL---EGMK---E--L---GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 211 ~~L~~~v~~~g~---~~l~---~--~---~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++..++..-.. +.+. . | +-......+..+++-..||+|.+|-+++..|-.
T Consensus 359 ~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 359 HALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 889988764332 1121 1 1 112222267778888899999999999887643
No 68
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=6.8 Score=38.65 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=86.1
Q ss_pred CCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC
Q 022417 64 PDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 64 ~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
.+=...+++++.+++--+=..+-+||..++.+...||+.+..++-.++..+...+.+=-+.|-....+++-.+-...+..
T Consensus 54 ~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 54 SKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred ccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh
Confidence 34455688999999999999999999999999999999999999999999988888876766666666665544344442
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.+.+ +-.++ ++.+..+..|=.|.||.-...+|+.+++..++
T Consensus 134 ~~sp----~~~l~----------------------------------~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 134 DQSP----MVSLL----------------------------------MPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred hhcc----hHHHH----------------------------------HHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 3332 22222 34445556666666666666666666666654
No 69
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=13 Score=37.93 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=111.9
Q ss_pred cHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGL-DSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++.+| +..+=+..+++++.|-++..-- ...+.+-+-.+...+...-++=-+++.-+|+...|.|...-|+ ..+
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~-~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG-GWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC-Cch
Confidence 345556666 4446677788888887776321 2234455666666777777788889999999999999998888 444
Q ss_pred cc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHH----------------------------------HHhcCchhHH
Q 022417 147 ST-SDALDNLVLQLLMKASQDKKFVCEEADRALNTM----------------------------------VESITPLPLL 191 (297)
Q Consensus 147 ~~-~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~M----------------------------------v~~~s~~kll 191 (297)
-+ .+.+-.-+..|+....+.|..+..+...++... ..++.+..++
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~ 458 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILM 458 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 32 111111223444444445544433333322211 1111222222
Q ss_pred HHHH---hhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 192 QKLK---TYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 192 ~~L~---~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
-.+. -+.+.--+.||..+.....+.+...-.......+...+......+..|..||++..|++++..+-
T Consensus 459 ~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 459 LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2221 12233334555555555555555444333333468999999999999999999999999987653
No 70
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.37 E-value=0.44 Score=29.45 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=24.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+++.+.++++|.+|+||..|=.++..+-+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57788899999999999999988877654
No 71
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.34 E-value=18 Score=40.35 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHHHHHHHHhc-Cc-----------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHH
Q 022417 165 QDKKFVCEEADRALNTMVESI-TP-----------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVS 232 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~-s~-----------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ 232 (297)
..+-++|-+.-.++.-+|.+. +. ..++..|...+.+-|+-||.++-+.+..++++-.. --+-...
T Consensus 323 ~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~---p~~~~~e 399 (1251)
T KOG0414|consen 323 SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI---PLGSRTE 399 (1251)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC---CccHHHH
Confidence 356667766666666555542 21 12566667788899999999999999998886331 1122678
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHH----HHHHHHHh
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQE----AWQSFCQS 280 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~----~~~~~~~~ 280 (297)
++..+...+.|++.=||.+|=+.+..+....+...++.-+ .||...|.
T Consensus 400 V~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~ 451 (1251)
T KOG0414|consen 400 VLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQK 451 (1251)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHh
Confidence 8999999999999999999999999998888887764333 36665553
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.17 E-value=28 Score=39.15 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=132.4
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST- 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~- 148 (297)
+..++..|+.. +.+.+||..|+.|+.+-.+ ...|..|++.++-...+.=..|--+|+.|+.++....++ +.+.
T Consensus 427 lts~IR~lk~~--~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~--~~~~d 500 (1431)
T KOG1240|consen 427 LTSCIRALKTI--QTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD--IPPSD 500 (1431)
T ss_pred HHHHHHhhhcc--hhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC--CCccc
Confidence 44556666433 5789999999999987655 345788999999999999999999999999999977666 2332
Q ss_pred hhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHH-------------------HhcC------------chhHHHHH-
Q 022417 149 SDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMV-------------------ESIT------------PLPLLQKL- 194 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv-------------------~~~s------------~~kll~~L- 194 (297)
+.-|.+-+.+-|..... ++..+|-.-..+|..+. +... ...++..+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 22233333333333332 23333322222221111 1000 01222222
Q ss_pred ---HhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH-----------------H
Q 022417 195 ---KTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR-----------------S 254 (297)
Q Consensus 195 ---~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR-----------------k 254 (297)
.+-+..-.+.||++..+-+..+|.-+|.++ .-+.|+.-+..||||.++-.|.+-- -
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey 656 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY 656 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence 234455557889888888777777777443 2467888889999999998887533 3
Q ss_pred HHHHHHHHhccchhh----hHHHHHHHHHhc-CChhhHHHHHHh
Q 022417 255 MVNSMYNAFTENEEH----KQEAWQSFCQSN-LQPIDAQSMVKI 293 (297)
Q Consensus 255 ~l~~L~~~~~~~~~~----~~~~~~~~~~~~-l~~~~a~~~~~~ 293 (297)
++-.|...+.+.||. ..++...+|+.. |.+.+...|++-
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQD 700 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 444567777777763 567888888754 345554444443
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.04 E-value=8.1 Score=36.23 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhc--CchhHHHHHHhhccCCCHHHHHH
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESI--TPLPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~--s~~kll~~L~~~~~hKn~~VR~~ 208 (297)
-++.|.+.... .+++. -.+..++..|+..+.. ...-||+.|-++|...+-.- ....-++.+....+.-...||..
T Consensus 6 i~~~lL~~~~~-~~~~~-~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~ 83 (298)
T PF12719_consen 6 ITQSLLENVSS-SLSPN-ISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKIT 83 (298)
T ss_pred HHHHHHHhccc-cCCCc-chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555666554 55553 1356778888777765 55799999999997654432 34466777766666569999999
Q ss_pred HHHHHHHHHHhhCchhhhhc-------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKEL-------GLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~-------~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
+.+.+..++-..|.+.+... +...+++...+++.+.++|+|..+=..+..|.
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999887655432 24789999999999999999999988888853
No 74
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=89.67 E-value=5.6 Score=33.56 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred CchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH-HHHhccC---CCHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV-AAGLLND---RLPEAREAARSMVNSMY 260 (297)
Q Consensus 186 s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~-~a~~l~D---~~pE~R~~aRk~l~~L~ 260 (297)
.|..++.+|..-++ ++|+.|...+-.+|..|++.-|..-..+..-..+++. +.+.+.+ ...+|+.-...++....
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 35578888876665 6899999999999999999999654333334555554 6666653 34589999999999999
Q ss_pred HHhccchh--hhHHHHHHHHHh
Q 022417 261 NAFTENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~--~~~~~~~~~~~~ 280 (297)
..|..+.+ .-.+.|+.+-.+
T Consensus 115 ~~f~~~~~l~~i~~~y~~L~~~ 136 (141)
T cd03565 115 DAFRGSPDLTGVVEVYEELKKK 136 (141)
T ss_pred HHhCCCccchHHHHHHHHHHHc
Confidence 99976542 233666665443
No 75
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=89.44 E-value=13 Score=39.12 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHHHHHHHhcCc----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 165 QDKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
...+-||---=.=++.-+.++++ .+++|++..|..+.|+.+|..|.+++..++.+++..
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 45555665555555666666663 479999999999999999999999999999998855
No 76
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.29 E-value=22 Score=34.55 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHHH----HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 82 WTNVCESLNNARRFALHHSSLLEPNL----EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 82 W~~~~eaL~~LRrLa~~h~e~l~~~L----~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
=.-.+|.|..+++|...+|+.+..+. +-++..+....+..|+. |+.+..++-..++. .. .+-..+.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~----a~~l~~~~~~~l~~-~~-----~~s~~~~ 217 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK----AISLLLEAKKCLGP-NK-----ELSKSVL 217 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHhCh-hH-----HHHHHHH
Confidence 35668999999999999999998664 45666666667777765 44444555556665 21 2444555
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc-cHHHHHHH
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL-GLVSLVQV 236 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~-~~~~ll~~ 236 (297)
..+.+...+++ +.+.-..-|..|+..-...+..+.++.+. +..+|...+... ..+..+..
T Consensus 218 ~~~~~~~~~~~-~~~~~~~~L~~mi~~~~~~~~a~~iW~~~------------------i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 218 EDLQRSLENGK-LIQLYCERLKEMIKSKDEYKLAMQIWSVV------------------ILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHhcccccccc-HHHHHHHHHHHHHhCcCCcchHHHHHHHH------------------HHHhCCchhhccHhHhHHHHH
Confidence 55555554443 44455555667766544445555554322 112243322221 26899999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 237 AAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 237 ~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
.-.|.+.++|.+|..|-.+...|-.....+
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998887755443
No 77
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.15 E-value=21 Score=37.31 Aligned_cols=172 Identities=11% Similarity=0.100 Sum_probs=106.1
Q ss_pred ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcc---------------hHHHHHHHHHHHHHHHHc
Q 022417 76 GLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPR---------------SALCKTSIMAASDIFSAF 140 (297)
Q Consensus 76 ~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLR---------------S~Vsk~A~~tl~dLf~~l 140 (297)
.+..++-..|..+...|-.|+.+.|+...+.+..+...+.+-+..-= -.+--+-|--+..+.+..
T Consensus 508 ~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~ 587 (858)
T COG5215 508 ELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR 587 (858)
T ss_pred HhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33567888999999999999999998776655444443332222111 122335566677777788
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHH
Q 022417 141 GDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 141 ~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~ 212 (297)
++ ++++. .+.+..|+.+..+ +..|+-++.-.|+.+|..+... .+.+|.|++.++...-.|-..+..+
T Consensus 588 ~~-~ie~v----~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl 662 (858)
T COG5215 588 RR-DIEDV----EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL 662 (858)
T ss_pred CC-CcccH----HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 88 66654 4444455555544 3578999999999999886542 4667777777765555666666666
Q ss_pred HHHHHHhhCchhhhhc---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 213 ISICVTKMGLEGMKEL---GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~---~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+...+|.+ +.-+ -+..+++.+. ++-+|..-|-++.+.
T Consensus 663 vgdlantl~~d-f~~y~d~~ms~LvQ~ls------s~~~~R~lKPaiLSv 705 (858)
T COG5215 663 VGDLANTLGTD-FNIYADVLMSSLVQCLS------SEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHhc------ChhhccccchHHHHH
Confidence 66676666643 2222 1345555554 555555555554443
No 78
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.97 E-value=5.5 Score=39.00 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHH-----hcCcchHHHHHHHHHHHHHHHHcCC-----CCCCc---ch
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKA-----MKNPRSALCKTSIMAASDIFSAFGD-----KLLDS---TS 149 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~-----vknLRS~Vsk~A~~tl~dLf~~l~~-----~~md~---~~ 149 (297)
..+..|.+.+|.|+.+..+.+.+.+...+..+... -.|.|+. -.|+..++.|...... ..... -.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~K--D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSK--DGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHH--HHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHH--HHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 67888999999999998888877777766666553 3344543 3466666666643211 00000 02
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
+.+...+.+-|.-..+...+++.+|-+.+...-..++.. .+++.|..++++.+..|+.++|.++
T Consensus 304 ~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 234444445555334577899999999999888888765 4666667899999999999999764
No 79
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=88.42 E-value=12 Score=35.77 Aligned_cols=158 Identities=12% Similarity=0.123 Sum_probs=105.0
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHh-hCh-hhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFAL-HHS-SLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~-~h~-e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
..+..++..- ..++|..-+..|..+-+... .++ --..+.=..|...+.++++ +|=|.|=+-|+.+-.-+|+.+|..
T Consensus 10 ~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~ 89 (307)
T PF04118_consen 10 AEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD 89 (307)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3455566555 36799999999999999888 333 3334555778889999999 899999999999999999999994
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.+-.+ +.--+ +.|.+-.++-+..||...-.++..-+-.+|.
T Consensus 90 ~L~~d---l~i~~-----------------------------------~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~- 130 (307)
T PF04118_consen 90 GLAQD---LPIYS-----------------------------------PGLFPLFSYASIQVKPQLLDIYEKYYLPLGP- 130 (307)
T ss_pred HHHhh---cHHHH-----------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-
Confidence 44332 22222 3333333444455665555545444445553
Q ss_pred hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+ .-.+.-++-.+-.++.|.+.|.-+..-+++..++...+.
T Consensus 131 ~L-~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 131 AL-RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred HH-HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh
Confidence 32 222566666666677777777777777777777766654
No 80
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=88.23 E-value=16 Score=32.09 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=79.2
Q ss_pred hccccHHHHHHHHHHHHHHHHh--cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh---ccHHHHHHHH
Q 022417 163 ASQDKKFVCEEADRALNTMVES--ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE---LGLVSLVQVA 237 (297)
Q Consensus 163 a~~sn~FI~e~A~~AL~~Mv~~--~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~---~~~~~ll~~~ 237 (297)
+.+++.=++-.|-..+..+++. ++|..++|.|..-.++.|+.+|..+-..+..+.++.+. -+.. .|+..-.+.-
T Consensus 17 ~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s-~v~~~~~~gi~~af~~~ 95 (187)
T PF12830_consen 17 CLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES-LVESRYSEGIRLAFDYQ 95 (187)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 4567788999999999999887 68999999999988999999999999999999988652 1111 1233333333
Q ss_pred HHhccCCCHH------------------HHHHHHHHHHHHHHHhccch-------hhhHHHHHHHHHhcC
Q 022417 238 AGLLNDRLPE------------------AREAARSMVNSMYNAFTENE-------EHKQEAWQSFCQSNL 282 (297)
Q Consensus 238 a~~l~D~~pE------------------~R~~aRk~l~~L~~~~~~~~-------~~~~~~~~~~~~~~l 282 (297)
...-.|...- .|.+-++.+..|-+.|..+. ....=.+-.||-.+|
T Consensus 96 ~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nL 165 (187)
T PF12830_consen 96 RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENL 165 (187)
T ss_pred HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHH
Confidence 3333333321 35666666666666665542 123345566666555
No 81
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=19 Score=38.51 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHH
Q 022417 105 PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVE 183 (297)
Q Consensus 105 ~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~ 183 (297)
+..++.-..|.+.+.+.-+-+=..++.+++--|..=|+ -..+..||+-+ +|.|.=|+.+|.-||..++-
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn----------nkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN----------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc----------hhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 44455556677777788888888888888877766666 24678888875 56788999999999998743
Q ss_pred hcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 184 SITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 184 ~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-.|..+...+.--..|-||-||.-+|..|-.+|..-| ....+..+-.++.|..-=||+.|--++.+.
T Consensus 585 -~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG--------~~eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG--------LKEAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred -cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC--------cHHHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 2455566666666789999999999998887777655 344455556666777777888777665543
No 82
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=88.03 E-value=14 Score=38.81 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 107 LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 107 L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
+..|++.+...++|---.|.-+.+..+|.++..-.. -.. +.+-..++-.|+.-..+.|+=||..|+.++..+...+.
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-yi~--~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-YIG--VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-cCC--HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 455566666666666667888888888888865222 222 23455677777777778999999999999999999999
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
|..++..|..+++..--+.|-+++.-+..+.+--|+-
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 9999999999888777777888887777777766653
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.50 E-value=25 Score=32.94 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=89.4
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
..+..+...+.+.++. +|..+.+ .+.. ..++.+..+++.+. +....|-+.|..+++.+...-
T Consensus 74 ~av~~l~~~l~d~~~~--------vr~~a~~---aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----- 137 (335)
T COG1413 74 EAVPLLRELLSDEDPR--------VRDAAAD---ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER----- 137 (335)
T ss_pred HHHHHHHHHhcCCCHH--------HHHHHHH---HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----
Confidence 4566666777777773 4444443 2221 23556666677777 688888888888777654221
Q ss_pred CcchhhHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDK--------KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn--------~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.++.++ ....+.. .+-......+.......+.....++.|..++.+....||..++..|..+.
T Consensus 138 -----a~~~l~----~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 138 -----ALDPLL----EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred -----hhHHHH----HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 122222 2222221 00000222222333333456677777777777777788887777666555
Q ss_pred Hhh--Cchhhh-------------------hccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 218 TKM--GLEGMK-------------------ELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 218 ~~~--g~~~l~-------------------~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
... ....+. ..+.+.-...+..++.+.++.+|..++....
T Consensus 209 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 209 SENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 442 100000 1134566666666777777777766665553
No 84
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.32 E-value=38 Score=34.79 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=119.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHh--hChhhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHH---cCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFAL--HHSSLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSA---FGDK 143 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~--~h~e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~---l~~~ 143 (297)
....+..+.|+|=+.++.+...+|+|.. .||.+-.-.-..+++.++..++ +---.+--+|-=++..+... --+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5567788889999999999999999984 3343322111244555555554 33345567888888888863 1221
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhcc-CCCHHHHHHHHHHHHH
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVK-HTNPRIRAKAAISISI 215 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~-hKn~~VR~~aA~~L~~ 215 (297)
..+. ..++.+.+=..+.+.-|+|.|-.||.-+....+.-| ++..|..... +..-...+.+.-.|.+
T Consensus 148 vv~a------gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDA------GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN 221 (514)
T ss_pred cccC------CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222 223333333456788899999999998877665433 3444444333 3334677778888999
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
++..-.+.--. ..+..+++++..++...++|+..-|--++..|-
T Consensus 222 lcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 222 LCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99865322111 126899999999999999999977766665543
No 85
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=35 Score=37.12 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=116.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHh--hChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFAL--HHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~--~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.++.++..+-++.=-.+-.||.++|+++. .|...+.+ ..|+.....-++|=-|-|==+||..+.-|+..+.. .|
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~--ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-~i- 803 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG--EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-DI- 803 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH--HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-hh-
Confidence 46788888888888889999999999998 66665544 77888889999999999999999988888877666 33
Q ss_pred cchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQD-KKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
++.+...-..+.... ...+-. ...|+..+++.-.+ .+++....+|+.+.--.-|......+-.|+..
T Consensus 804 -----l~dL~e~Y~s~k~k~~~d~~lk-VGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 804 -----LPDLSEEYLSEKKKLQTDYRLK-VGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred -----HHHHHHHHHhcccCCCccceeh-HHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 333333222222111 111111 12333333333222 25666667888866666688887778888775
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
..- .+-++-++.+...+.-.-.|+++-+|.+|=..+..+-.
T Consensus 878 ~a~-~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 878 LAF-QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 431 11111134444444444469999999998877776544
No 86
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=86.92 E-value=15 Score=41.42 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK---NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk---nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
-++..|...|.-|+.+....+...+..+-..+.+.+. +..+ -....-+.|.++-. .|+.....+-..++.|
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-----~~~~s~~vf~s~~~-~m~s~l~~~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-----EFLSSFEVFNSLAP-LMHSFLHPLGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-----chhhhHHHHHHHHH-hhhhhhhhhhhhhhHH
Confidence 4567888889999987766555444443333333332 2221 22333344444444 3443311122333344
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV 236 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~ 236 (297)
+.-.-..-..+|-.+.+|...|.+..+.. .++..+..-.+.-...+|+..+.++..++..++...+..+ ..-++.-
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~-~~Llv~p 900 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPY-NPLLVVP 900 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccc-ceeehhh
Confidence 33333456889999999999999887754 4555555666777778999999999999998876666555 4566777
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccch----------h--hhHHHHHHHHHhcCChhhH
Q 022417 237 AAGLLNDRLPEAREAARSMVNSMYNAFTENE----------E--HKQEAWQSFCQSNLQPIDA 287 (297)
Q Consensus 237 ~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~----------~--~~~~~~~~~~~~~l~~~~a 287 (297)
+...+.|..-.+|+++-+++..+.-..+..+ | ++-+....|++.-|.|..+
T Consensus 901 llr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski 963 (1549)
T KOG0392|consen 901 LLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKI 963 (1549)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccC
Confidence 7888899999999999999999988877654 1 2447788899888887654
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.76 E-value=8 Score=41.99 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=93.8
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
++....+=..+..-|..|-.+..+-| +++.+.++.+.+.+++.+.=+--.|--.+..|+..+-...+. .++- .++
T Consensus 874 ~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t-L~t~---~~~ 949 (1030)
T KOG1967|consen 874 SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET-LQTE---HLS 949 (1030)
T ss_pred HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc-cchH---HHh
Confidence 33333333444444555555555556 456789999999999988744433333455677777766666 5654 488
Q ss_pred HHHHHHHHHhcc-cc--HHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHH
Q 022417 154 NLVLQLLMKASQ-DK--KFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 154 ~ll~~LL~Ka~~-sn--~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
.+++-||.=..+ +| ..+|+.|=.+|.++.+..++ ..++.+|...+.||--.||..++.
T Consensus 950 Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 950 TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 888888876666 33 79999999999999985543 368889999999999999987764
No 88
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.34 E-value=15 Score=39.21 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=68.7
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
.++..|..-..+-+|-+|.++-+.+..++..-. ..-+....+...+.+.++|++.-||..|=+++..|--.++...+
T Consensus 346 ~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s---k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~ 422 (1128)
T COG5098 346 DLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS---KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASE 422 (1128)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc---cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhh
Confidence 446667778899999999999988888887522 11223688999999999999999999999999998777777776
Q ss_pred hhH----HHHHHHHH
Q 022417 269 HKQ----EAWQSFCQ 279 (297)
Q Consensus 269 ~~~----~~~~~~~~ 279 (297)
|+. .-|+..+.
T Consensus 423 h~~~l~~~~wek~L~ 437 (1128)
T COG5098 423 HGSQLRLTLWEKNLG 437 (1128)
T ss_pred ccchhhhHHHHhhcc
Confidence 532 67776543
No 89
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.27 E-value=23 Score=34.76 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=90.7
Q ss_pred HHHHHhccCC-cCH---HHHHHHHHHHHHHHhhC--hhhh--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 70 IPCLIEGLDS-KDW---TNVCESLNNARRFALHH--SSLL--EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 70 l~~~l~~L~s-~dW---~~~~eaL~~LRrLa~~h--~e~l--~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
|..+++.+++ ++- +..-+.|..||.|+-.. .+.+ .+-+..|+.......+|+ .|+.++|.++..|+- +
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p--~Vi~~~~a~i~~l~L--R 360 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDP--LVIQEVMAIISILCL--R 360 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCCh--HHHHHHHHHHHHHHh--c
Confidence 3344555543 332 23456788888888422 1222 244677777777777776 678888888777763 3
Q ss_pred CCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 142 DKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
. -|.. .. -|=.-.|+.++.+| -..-+...|++.++..+-+++-+-.
T Consensus 361 ~--pdhs----a~-------------~ie~G~a~~avqAm---------------kahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 361 S--PDHS----AK-------------AIEAGAADLAVQAM---------------KAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred C--cchH----HH-------------HHhcchHHHHHHHH---------------HhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 3 1211 11 11123455666666 1222445788888888888887643
Q ss_pred c--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 222 L--EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 222 ~--~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. ..++.+|.++++.++.. .++.+|..++-++.-|
T Consensus 407 ~~~~~~l~~GiE~Li~~A~~----~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 407 ENRTILLANGIEKLIRTAKA----NHETCEAAAKAALRDL 442 (461)
T ss_pred hccchHHhccHHHHHHHHHh----cCccHHHHHHHHHHhc
Confidence 2 33678899999998874 4677899999887654
No 90
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.25 E-value=48 Score=39.10 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhhCh--hhhh-HHH-HHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 83 TNVCESLNNARRFALHHS--SLLE-PNL-EKVMAVVVKAMKNPRS-ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~--e~l~-~~L-~~i~~~v~~~vknLRS-~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
...+-|+..||+|+...- +.+. -.+ ++++..+...|.+-.+ .|-.-.+.|+..|-...+. .+... ..++.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-nIkSG----WktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-NVKSG----WKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-hhhcC----cHHHH
Confidence 456788889999985321 1111 112 2444444444444333 6667778888888887776 45442 23344
Q ss_pred HHHHHh-ccccHHHHHHHHHHHHHHHHh----cC------chhHHHHHHhhccCC-CHHHHHHHHHHHHHHHHhhCchh-
Q 022417 158 QLLMKA-SQDKKFVCEEADRALNTMVES----IT------PLPLLQKLKTYVKHT-NPRIRAKAAISISICVTKMGLEG- 224 (297)
Q Consensus 158 ~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~----~s------~~kll~~L~~~~~hK-n~~VR~~aA~~L~~~v~~~g~~~- 224 (297)
.+|.-+ .+...=+.+-|=.++..++.. ++ -..++..|...++.+ +..+=-.+-.+|-.|...+-...
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 444433 344455555555566555443 11 124555555544433 34444444445555533331000
Q ss_pred ----------------------------hhhc-----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhH
Q 022417 225 ----------------------------MKEL-----GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ 271 (297)
Q Consensus 225 ----------------------------l~~~-----~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~ 271 (297)
+... .-=-++..+.+.+.|..+|+|..|=..|......||..= +.
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F--s~ 1384 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF--SL 1384 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC--CH
Confidence 0000 012466777778899999999998777666556665443 66
Q ss_pred HHHHHHHHhcCChh
Q 022417 272 EAWQSFCQSNLQPI 285 (297)
Q Consensus 272 ~~~~~~~~~~l~~~ 285 (297)
+.|+..|...|-|.
T Consensus 1385 ~~W~~if~~VLFPI 1398 (1780)
T PLN03076 1385 PLWERVFESVLFPI 1398 (1780)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988776
No 91
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.23 E-value=7.9 Score=42.98 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
|=+-+..|--.|-|+.--..++...+++-++..+.+.=. -+|| |+..++|||.-.|.+ .+|++.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRs----N~VvalgDlav~fpn-lie~~T---------- 1000 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRS----NLVVALGDLAVRFPN-LIEPWT---------- 1000 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeee----cchheccchhhhccc-ccchhh----------
Confidence 334444444445555444455555556655555543221 2444 788889999988888 888772
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHH
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~ 239 (297)
+.|.+-+.+-|+.||+.+...|..++-. +.+. +.=.+.-++.
T Consensus 1001 --------------------------------~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiK---VKGql~eMA~ 1042 (1251)
T KOG0414|consen 1001 --------------------------------EHLYRRLRDESPSVRKTALLVLSHLILN---DMIK---VKGQLSEMAL 1042 (1251)
T ss_pred --------------------------------HHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhH---hcccHHHHHH
Confidence 3334445677888998888888877753 1111 1223455889
Q ss_pred hccCCCHHHHHHHHHHHHHHHH
Q 022417 240 LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 240 ~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
||.|.++++|..||..|..|.+
T Consensus 1043 cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1043 CLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HhcCCcHHHHHHHHHHHHHhhh
Confidence 9999999999999977766533
No 92
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.04 E-value=14 Score=38.62 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=108.4
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++.++.++|-..++..|..|+++...-.++=......+...+.+-+=+--+.|=++|..++..+=.- ..+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~----~~ne 166 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM----ELNE 166 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc----cCCh
Confidence 457788999999999999999999999987554433333455556677777788899999999998765522 2232
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
+ ..+..++..++ .|.--. +..++...++.. ..--.|.+..-+.+-|...|+++ -.+|+.++|.-+..+
T Consensus 167 e-n~~~n~l~~~v-----qnDPS~-EVRr~allni~v--dnsT~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~ls 234 (885)
T COG5218 167 E-NRIVNLLKDIV-----QNDPSD-EVRRLALLNISV--DNSTYPCILERARDVSGANRRMV---YERCLPRIGDLKSLS 234 (885)
T ss_pred H-HHHHHHHHHHH-----hcCcHH-HHHHHHHHHeee--CCCcchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhcc
Confidence 2 11222222211 121122 222222222211 22234566666777788888865 467888998655443
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
.++=+-.+-.+++|+.-.+|.++..++..
T Consensus 235 --i~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 --IDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred --ccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 23323377788889888888888877654
No 93
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.93 E-value=8 Score=42.43 Aligned_cols=116 Identities=10% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcC-----chhHHHHHHhhcc
Q 022417 127 KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESIT-----PLPLLQKLKTYVK 199 (297)
Q Consensus 127 k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s-----~~kll~~L~~~~~ 199 (297)
-.++.|++.||-.-++ +-.=..++|-|-.+ +..-||...- .+|+.-|. ..+-+|.|...+.
T Consensus 949 a~~vvTlakmcLah~~---------LaKr~~P~lvkeLe~~~~~aiRnNiV---~am~D~C~~YTam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 949 AVGVVTLAKMCLAHDR---------LAKRLMPMLVKELEYNTAHAIRNNIV---LAMGDICSSYTAMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHhhhhH---------HHHHHHHHHHHHHHhhhHHHHhccee---eeehhhHHHHHHHHHHhhHHHHHHhc
Confidence 3588999999976555 22222233333333 2222332222 23333333 2367899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+.++.||+.+-.+|.+++.. .+....=.-++..+. .+-|+++++|..|+-.+..+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~----~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQF----GIVKWNGELFIRFML-ALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhh----hhhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHH
Confidence 99999999999999999874 222322233444443 35688999999999877654
No 94
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.81 E-value=4.8 Score=35.34 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=57.3
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+-++.++..+.+.+..||..+..++..++++ | +. +-...++.+..+..|.++.+|..|.+++..+++.|+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-G---Lv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-G---LV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-C---CC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 5567777888899999999888877666653 3 21 2467888999999999999999999999999887754
No 95
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.41 E-value=22 Score=39.95 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=102.0
Q ss_pred HHHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHh
Q 022417 107 LEKVM-AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN-TMVES 184 (297)
Q Consensus 107 L~~i~-~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~-~Mv~~ 184 (297)
|+..+ ..+...+.+.-+-|-|+=++.+++||..||+..-+ |-+|.-|.. |+-+. +..|. +..++
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN------D~iLshLiT-------fLNDk-Dw~LR~aFfds 640 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN------DVILSHLIT-------FLNDK-DWRLRGAFFDS 640 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc------cchHHHHHH-------HhcCc-cHHHHHHHHhh
Confidence 44433 45566677777888888899999999999994333 334444432 44333 44442 33344
Q ss_pred cC-----------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 185 IT-----------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 185 ~s-----------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
+. ..-++|.|+.++++.-..|-.++-.+|..+|+. +-+.+..+-.+++.+.-+|+-.+.=+|..+=
T Consensus 641 I~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~---~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 641 IVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL---GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred ccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh---cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 33 346899999999999999999999999999885 2233445788899999999999999998888
Q ss_pred HHHHHHHHHhccc
Q 022417 254 SMVNSMYNAFTEN 266 (297)
Q Consensus 254 k~l~~L~~~~~~~ 266 (297)
.++....+.++.-
T Consensus 718 ~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 718 GIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHHHhhhhhh
Confidence 8887777766654
No 96
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=85.24 E-value=27 Score=34.75 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHH
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
+..|+.-..+....++.++..+|.. +....+.+.|...+++.+|.||+.+..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~~~L~~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAEPWLEPLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhcCCChHHHHHHHH
Confidence 3444444455667788888888864 467777888888888888888865543
No 97
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.96 E-value=59 Score=35.06 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred ccceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHH
Q 022417 50 AFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTS 129 (297)
Q Consensus 50 ~~v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A 129 (297)
+.+.|+.+.+..|...- .+-+.|.+.|=+.+++|++.+-.+.... |-+.+.+..|++.+.. .|+.--|-
T Consensus 7 ~~~~~~~~p~~e~~~~~-----~ik~~Lek~~~~~KIeamK~ii~~mlnG-e~~p~Llm~IiRfvlp----s~~~elKK- 75 (948)
T KOG1058|consen 7 VCYTLLNSPDGEPMSED-----EIKEKLEKGDDEVKIEAMKKIIALMLNG-EDLPSLLMTIIRFVLP----SRNHELKK- 75 (948)
T ss_pred ceeeeecCCcccccchH-----HHHHHHhcCChHHHHHHHHHHHHHHHcC-CCchHHHHHHhheeec----cCchHHHH-
Confidence 45677777777776655 6667788899999999999888887633 3333344444444432 23321111
Q ss_pred HHHHHHHHHHcCCCCCCcchhhHHHHHH--HHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCCCH
Q 022417 130 IMAASDIFSAFGDKLLDSTSDALDNLVL--QLLMKASQ-DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHTNP 203 (297)
Q Consensus 130 ~~tl~dLf~~l~~~~md~~~~~ld~ll~--~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hKn~ 203 (297)
.+-..++.+.+ .+.....+.+++. .-+.|=.+ -|.|||-.. |..+++-=-+ ..++|.+..++.|+++
T Consensus 76 --Lly~ywE~vPK--t~~dgkl~~EMILvcna~RkDLQHPNEyiRG~T---LRFLckLkE~ELlepl~p~IracleHrhs 148 (948)
T KOG1058|consen 76 --LLYYYWELVPK--TDSDGKLLHEMILVCNAYRKDLQHPNEYIRGST---LRFLCKLKEPELLEPLMPSIRACLEHRHS 148 (948)
T ss_pred --HHHHHHHHccc--cCCCcccHHHHHHHHHHHhhhccCchHhhcchh---hhhhhhcCcHHHhhhhHHHHHHHHhCcch
Confidence 11112233333 2222223444442 22333333 688888654 4444433222 3678888899999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 204 RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
-||+.+-.++..+.+... .+.. +...++.- -++.|.+|-+...|--++.
T Consensus 149 YVRrNAilaifsIyk~~~--~L~p-DapeLi~~--fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 149 YVRRNAILAIFSIYKNFE--HLIP-DAPELIES--FLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhhhhhheeehhHHhhhh--hhcC-ChHHHHHH--HHHhccCchhHHHHHHHHH
Confidence 999999888877777621 1111 12222221 1346777776655544443
No 98
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=17 Score=38.95 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
...+.-.+.+|++|++-|+|+.|+-.+..+.
T Consensus 501 ~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 501 LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5788888999999999999999999988887
No 99
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.82 E-value=24 Score=35.09 Aligned_cols=118 Identities=17% Similarity=0.011 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP 189 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k 189 (297)
.+..++..+.+....|..++..++|.+ +. + .....|+.-..+...|++..+-.++..... -
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~----~------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~---- 147 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----GG----R------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-D---- 147 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc----h------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C----
Confidence 366777778888777877777766632 22 1 222333333356778999877766665321 1
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..+.|...++|.++.||+.++..|-.+-. ...+..+...+.|.++++|..|=..+..
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 24455556679999999998876644321 1122224455899999999888776643
No 100
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=84.30 E-value=5.7 Score=43.05 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=87.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcc--hHHHH-HHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPR--SALCK-TSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLR--S~Vsk-~A~~tl~dLf~~l~~~~md 146 (297)
+.-+++.|+=.|=..++..++++.-+..-|+.++..++..+++.+...=++.. +.|.| .|++|+.-|-+.+....+-
T Consensus 911 lPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~ 990 (1030)
T KOG1967|consen 911 LPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL 990 (1030)
T ss_pred HHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence 45677888889999999999999999999999999999999998877777666 36666 5899999999877776666
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALN 179 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~ 179 (297)
++ -|..+..|.+-..|.|+.||++|-++=.
T Consensus 991 ~f---r~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 991 SF---RPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cc---cHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 65 5667777666556789999999988754
No 101
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.08 E-value=45 Score=32.77 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc----------hhhHHHHHHHHHHHhccccHHHHHHHHHH
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST----------SDALDNLVLQLLMKASQDKKFVCEEADRA 177 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~----------~~~ld~ll~~LL~Ka~~sn~FI~e~A~~A 177 (297)
.+++..+...+.+ ..+...|..+++-|+.-... .+... -..|..+++.|+.+..+.+.-++...-.|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 3444455555665 55666666666665543222 21111 23478889999988877666688888999
Q ss_pred HHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHH
Q 022417 178 LNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAA 238 (297)
Q Consensus 178 L~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a 238 (297)
|..++++++. ..++|.|..+++..++.++..+-..|..+++.- +.+...+++.+++.+-
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 9999999985 468888889999999999999999998888865 2333334566655544
No 102
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=5.4 Score=40.72 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=121.2
Q ss_pred CCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHc
Q 022417 62 AIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAF 140 (297)
Q Consensus 62 Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l 140 (297)
|+......|..++..|.+.|=+...+|+-.|+-|+.+.+|.+.-.+ -.+++.|+..+...--.|.--|+.++|.+..
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt-- 308 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT-- 308 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--
Confidence 3445566788888888999999999999999999987777665332 3466677777776666666788888888654
Q ss_pred CCCCCCcc--hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHH
Q 022417 141 GDKLLDST--SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 141 ~~~~md~~--~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
|++..... ....-.++..||.+ ..+..|+.+|-.++.-|+.... -+-++|.|...+++---.+|..+|-
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 33111111 00122334444332 3566799999999988765332 2347788887777666789999999
Q ss_pred HHHHHHHhhCchhh---hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 212 SISICVTKMGLEGM---KELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 212 ~L~~~v~~~g~~~l---~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+.++...=..+.+ .+.| +++....++.-.+..+ .+.++..|...+
T Consensus 387 aIsN~ts~g~~~qi~yLv~~g---iI~plcdlL~~~D~~i---i~v~Ld~l~nil 435 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQG---IIKPLCDLLTCPDVKI---ILVALDGLENIL 435 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcC---CchhhhhcccCCChHH---HHHHHHHHHHHH
Confidence 99988775333332 1223 5555566664444443 444444444333
No 103
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.61 E-value=52 Score=37.41 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
.+-.++++|-.+...++.+.|-.|...++-|...- +...+....+....+++..||-.+.++...|+-......
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 46778888888888999999999999999887642 145677777788889999999999998888876542110
Q ss_pred --------hh----------------------hcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-Hhccchh
Q 022417 225 --------MK----------------------ELG---LVSLVQVAAGLLNDRLPEAREAARSMVNSMYN-AFTENEE 268 (297)
Q Consensus 225 --------l~----------------------~~~---~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~-~~~~~~~ 268 (297)
+. .+. ...++..++.-+-|.-+.||..|-.-+..+|+ +|....+
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~ 413 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSA 413 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 000 12299999999999999999999999888888 4644433
No 104
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=82.72 E-value=48 Score=32.07 Aligned_cols=140 Identities=11% Similarity=0.151 Sum_probs=97.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhh----hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLL----EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l----~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+++.+...+.+-..+|..+++.|...|+.+. ..+...+.....+.+.+-.=...|.++..+|||...-.+
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n--- 242 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN--- 242 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH---
Confidence 4456677788889999999999999998888654 467788888888999988888889999999998743111
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-chh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG-LEG 224 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~~ 224 (297)
...|..+++...-|..+-..+++++..||-.+--.+---|..=. ++.
T Consensus 243 --------------------------------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~ 290 (335)
T PF08569_consen 243 --------------------------------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP 290 (335)
T ss_dssp --------------------------------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH
T ss_pred --------------------------------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH
Confidence 13466667766667777777778888887766544444443311 111
Q ss_pred ---hhhccHHHHHHHHHHhccCC
Q 022417 225 ---MKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 225 ---l~~~~~~~ll~~~a~~l~D~ 244 (297)
++..+.++++.-+.+|..|.
T Consensus 291 I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 291 IVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 33456888888888888887
No 105
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.26 E-value=78 Score=34.15 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=108.8
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
+..+++++=..+......+ .....-.++.+ ..-...++.+.....+.--.|-.+.+.-+-.+...+|...+
T Consensus 443 ~~~l~de~~~V~lnli~~l-s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~------ 515 (759)
T KOG0211|consen 443 IGNLKDEDPIVRLNLIDKL-SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF------ 515 (759)
T ss_pred hhhcchhhHHHHHhhHHHH-HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh------
Confidence 3444554444443333333 33333333332 12233344444444443222333334445555555554233
Q ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 152 LDNLVLQLLMKASQD-KKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 152 ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++.+..|+..-..+ =.=|++.|.+.|-..+..-. ....++.++....+.|-.+|..++..+..+.+-+|.+..
T Consensus 516 -~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~- 593 (759)
T KOG0211|consen 516 -DEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT- 593 (759)
T ss_pred -hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH-
Confidence 33344443322222 24588888888888887755 346888888777777999999999999999998886543
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+.+++.+-.+..|..|++|..+=+.+..+....
T Consensus 594 ---~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 594 ---CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred ---HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 6889999999999999999999988877754443
No 106
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.86 E-value=36 Score=30.06 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhh-ChhhhhHHHHHHHHH------------HHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 84 NVCESLNNARRFALH-HSSLLEPNLEKVMAV------------VVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 84 ~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~------------v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
-|..||..|..++++ .+..+.+..+.+++. +.-.++|+-..|=-.|+.+++.|+...+. -+-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~---- 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLA---- 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHH----
Confidence 367899999999987 666665555444432 24446677777888888888888876332 111
Q ss_pred hHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhcCchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 151 ALDNLVLQLLMKAS----QDKKFVCEEADRALNTMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~----~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
-+. ....|..=.. .|..|+..+ =..|.. -...+++.+-....+++..++..-.=+++
T Consensus 77 -----------~Ae~~~~~~~sFtslS~--tLa~~i~~l-----H~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL 138 (182)
T PF13251_consen 77 -----------QAEESKGPSGSFTSLSS--TLASMIMEL-----HRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL 138 (182)
T ss_pred -----------HHHhcCCCCCCcccHHH--HHHHHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc
Confidence 111 1224443322 233332211 122322 23567788888888888888876554555
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 226 KELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 226 ~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
...-+..++..+..++...++++|.++--++..|.++.+.
T Consensus 139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 4333789999999999999999999999998888776543
No 107
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.82 E-value=10 Score=30.22 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=49.9
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHh-----c-cCCCHHHHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL-----L-NDRLPEAREAARSMVNSM 259 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~-----l-~D~~pE~R~~aRk~l~~L 259 (297)
..++..|..-+.|+|+.+..++-.+|..|++.-|..-........++.-+.++ . .|.+..+|+.++.++...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45777887788899999999999999999999885543333222222222221 1 345889999999887643
No 108
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=8.7 Score=37.98 Aligned_cols=176 Identities=17% Similarity=0.115 Sum_probs=113.1
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh--
Q 022417 113 VVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-- 189 (297)
Q Consensus 113 ~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-- 189 (297)
.++.+|...--.|-++|.-|+..|...=.++ .+-. ...+..+.. |.| ...--++-.+..+|..|...--..+
T Consensus 130 ~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~-sGaL~pltr--Lak--skdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 130 LLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR-SGALEPLTR--LAK--SKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred HHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhh-ccchhhhHh--hcc--cchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455666666778888888888887541110 1111 122333332 222 2334577788888888865533333
Q ss_pred ----HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 190 ----LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 190 ----ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-+|.|.+.+++.++.||.++...+.++--.-...+++...-.++++.+..+..|+++.+...|--++..|-+--.-
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 3567788899999999998887777654322223333333478999999999999999999998887765432221
Q ss_pred chh----hhHHHHHHHHHhcCChhhHHHHHHh
Q 022417 266 NEE----HKQEAWQSFCQSNLQPIDAQSMVKI 293 (297)
Q Consensus 266 ~~~----~~~~~~~~~~~~~l~~~~a~~~~~~ 293 (297)
+-| .+.-.+..++|+...|.-+.+|.=|
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 111 2456788888998888888877655
No 109
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.41 E-value=75 Score=34.17 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HcCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHH-------
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFS-AFGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRAL------- 178 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~-~l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL------- 178 (297)
...+..+...++++---.+|.-|+-.|++|- .-+...+|-..+-=+.++......+.-.. .-++....+.|
T Consensus 82 ~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqk 161 (1005)
T KOG1949|consen 82 INFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQK 161 (1005)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4455556666777777778888999999874 44444444321112345555555443211 12333333333
Q ss_pred ------HHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh---hccHHHHHHHHHHhccCCCHHHH
Q 022417 179 ------NTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK---ELGLVSLVQVAAGLLNDRLPEAR 249 (297)
Q Consensus 179 ------~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~---~~~~~~ll~~~a~~l~D~~pE~R 249 (297)
+.|+. .-.=|.|.++++-+|..||..+|.++.+...-.|++.-. +.-+++-..-+.+++.|--|.+|
T Consensus 162 k~~qgVeeml~----rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VR 237 (1005)
T KOG1949|consen 162 KVRQGVEEMLY----RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVR 237 (1005)
T ss_pred HHhhhHHHHHH----HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 33322 112355678999999999999999999999988866422 22367778889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022417 250 EAARSMVNSMYNAF 263 (297)
Q Consensus 250 ~~aRk~l~~L~~~~ 263 (297)
..|-.-+......|
T Consensus 238 S~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 238 STAILGVCKITSKF 251 (1005)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987776655544
No 110
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.69 E-value=48 Score=30.90 Aligned_cols=142 Identities=11% Similarity=0.212 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC---CCcc--hhhHHHHHHHHHHH----h-ccccHHH
Q 022417 101 SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL---LDST--SDALDNLVLQLLMK----A-SQDKKFV 170 (297)
Q Consensus 101 e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~---md~~--~~~ld~ll~~LL~K----a-~~sn~FI 170 (297)
..+...++-+++.++..++|....+-..||.++..+........ +... .+-+.+.+.++|.- + .+..--+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45667899999999999999999999999999999998776644 2222 11233333333321 0 1355667
Q ss_pred HHHHHHHHHHHHHhc------C----chhHHHH-HHhhcc----CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHH
Q 022417 171 CEEADRALNTMVESI------T----PLPLLQK-LKTYVK----HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ 235 (297)
Q Consensus 171 ~e~A~~AL~~Mv~~~------s----~~kll~~-L~~~~~----hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~ 235 (297)
-..|=.||..++.-. . ..+++.. +..+.. ..++.++....+.+..++..+|...+.. +.+++.
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~h--L~rii~ 268 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKH--LQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHH--HHHHHH
Confidence 778888888775531 1 1234433 444333 2368999999999999999999765544 678888
Q ss_pred HHHHhccCC
Q 022417 236 VAAGLLNDR 244 (297)
Q Consensus 236 ~~a~~l~D~ 244 (297)
.+...+.+-
T Consensus 269 ~l~~~l~np 277 (282)
T PF10521_consen 269 VLSQILENP 277 (282)
T ss_pred HHHHHhcCC
Confidence 887776654
No 111
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.10 E-value=8.5 Score=31.93 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh--ccHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE--LGLVSLVQVAAGLLN--------DRLPEAREAARSMVNS 258 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~--~~~~~ll~~~a~~l~--------D~~pE~R~~aRk~l~~ 258 (297)
.++..|..-++++++-|+.++.++|..|+..- .+.+.. .....+++.+..|-. |-+..||..|+.++..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 56788888889999999999999999999873 333322 112456666666665 3355899999999887
Q ss_pred HHH
Q 022417 259 MYN 261 (297)
Q Consensus 259 L~~ 261 (297)
+++
T Consensus 117 if~ 119 (122)
T cd03572 117 IFS 119 (122)
T ss_pred Hhc
Confidence 765
No 112
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=79.92 E-value=17 Score=32.29 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=71.2
Q ss_pred HhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---
Q 022417 183 ESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM--- 259 (297)
Q Consensus 183 ~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L--- 259 (297)
+.......|+.+..|+..+.-.-|--+.+-+..+++.-|.+++... +.+++..+.+.++-.++++...+=+++..|
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3455667888888888876666676677777788877455566554 788999999999999999999999999888
Q ss_pred HHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 260 YNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
....+ +++.-|.+.-||+.+
T Consensus 111 ~~~vG-------~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 111 SDMVG-------EALVPYYRQLLPVLN 130 (183)
T ss_pred hhhhh-------HHHHHHHHHHHHHHH
Confidence 55554 566666665555443
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.85 E-value=81 Score=33.56 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHH
Q 022417 170 VCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPE 247 (297)
Q Consensus 170 I~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE 247 (297)
||++|-.+|..+..+-+ +.+.+..|.--.++---.||-++-..|..+...+. | .+..++.+.+.|.|.+++
T Consensus 389 VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i----~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---I----REEQLRQILESLEDRSVD 461 (823)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---e----cHHHHHHHHHHHHhcCHH
Confidence 45555555555544322 33555555555555556677766666665555422 1 467788899999999999
Q ss_pred HHHHHHHHHHH
Q 022417 248 AREAARSMVNS 258 (297)
Q Consensus 248 ~R~~aRk~l~~ 258 (297)
+|+..|.++..
T Consensus 462 vRe~l~elL~~ 472 (823)
T KOG2259|consen 462 VREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 114
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.77 E-value=8.1 Score=41.28 Aligned_cols=63 Identities=21% Similarity=0.343 Sum_probs=49.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 191 LQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 191 l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+..++.-++|.|+.+|..|-+.+.. ++...+ .+.++..+.++++|.++.||..|=-++..+|+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~----l~~~el----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSL----LRVKEL----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHh----cChHHH----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 3445668899999999988765433 333333 67899999999999999999999888888774
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.95 E-value=1e+02 Score=33.77 Aligned_cols=195 Identities=9% Similarity=0.085 Sum_probs=109.5
Q ss_pred CCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh-cCcchHHH---HHHHHHHHHH
Q 022417 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM-KNPRSALC---KTSIMAASDI 136 (297)
Q Consensus 61 ~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v-knLRS~Vs---k~A~~tl~dL 136 (297)
.|+..++..++-+++.|+++|=-....+++-+-.|+.-.|+-+.+.+-+-...-.+.- -+-|=-|- -.-+++.|||
T Consensus 761 ~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel 840 (982)
T KOG4653|consen 761 ATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL 840 (982)
T ss_pred hhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccH
Confidence 4455667777778888888876666666666667777677777665555443333332 23333333 2223455666
Q ss_pred HHHcCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcC------chhHHHHHHh-hccCCCHHHHHH
Q 022417 137 FSAFGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESIT------PLPLLQKLKT-YVKHTNPRIRAK 208 (297)
Q Consensus 137 f~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s------~~kll~~L~~-~~~hKn~~VR~~ 208 (297)
|..+.. .+..++.+...+. .-.|..+-..|+..++-.. -..++..+.. ...+.++.|||.
T Consensus 841 ~~~y~~------------~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRa 908 (982)
T KOG4653|consen 841 VFKYKA------------VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRA 908 (982)
T ss_pred HHHHHH------------HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHH
Confidence 654433 1222222332222 2223334444444444322 1234444543 445899999999
Q ss_pred HHHHHHHHHHhhCchhhhhc----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 209 AAISISICVTKMGLEGMKEL----GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~----~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
++.++..++..+| ..+..+ ..+.......---.+.+-.+|.++..++..+..+..+..+
T Consensus 909 Av~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~ 971 (982)
T KOG4653|consen 909 AVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDD 971 (982)
T ss_pred HHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888 333331 1222222222222455666899999999988888875543
No 116
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=78.89 E-value=20 Score=31.98 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHH-hhc-cCC
Q 022417 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLK-TYV-KHT 201 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~-~~~-~hK 201 (297)
..-+..+..++.+|..+|. .-.+ .+.+++..|-.--.+..--.+++++.++.+.+..+.|..++..|- .-- .+.
T Consensus 15 ~aw~~vl~v~s~lf~~lg~-~~~~---~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~ 90 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGE-RSSP---LLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADD 90 (198)
T ss_pred HHHHHHHHHHHHHHHHHhh-hccH---HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCc
Confidence 3556778899999999999 4343 255555544333334556789999999999999999999998883 211 233
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 022417 202 NPRIRAKAAISISICVTK 219 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~ 219 (297)
...-| .||.-+++.
T Consensus 91 ~~~~r----aWLLPlLr~ 104 (198)
T PF08161_consen 91 SQPGR----AWLLPLLRD 104 (198)
T ss_pred CCccc----chhHHHHHH
Confidence 32233 356666664
No 117
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=78.65 E-value=23 Score=28.29 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=60.4
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHH
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQ 158 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~ 158 (297)
..+=..+..+|..+..|.+...+-+.....+|+..+-..+... .+...|+.|-..+.+.+....+.+. ++.++..
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~l---l~~~~~~ 100 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPL---LDQIFAI 100 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHH
Confidence 4577888999999999999888888888899998888877766 7788899999999988887555443 5555544
Q ss_pred HH
Q 022417 159 LL 160 (297)
Q Consensus 159 LL 160 (297)
++
T Consensus 101 l~ 102 (107)
T PF08064_consen 101 LL 102 (107)
T ss_pred HH
Confidence 44
No 118
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.64 E-value=14 Score=39.55 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 152 LDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 152 ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
+--++...|++=.. +|+|+---|=-||..|+.-=-...+.|-+-.-++|+++.||++++.|..+++.+..
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 44455555555543 89999877766666653222223455556678899999999999999999998865
No 119
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=78.52 E-value=68 Score=31.19 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=116.7
Q ss_pred hhChhhhhHHHHHHHHHHHHHhcC-cch-HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHH
Q 022417 97 LHHSSLLEPNLEKVMAVVVKAMKN-PRS-ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEA 174 (297)
Q Consensus 97 ~~h~e~l~~~L~~i~~~v~~~vkn-LRS-~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A 174 (297)
.|.+.++.....+.+..++..|++ ..| +|..+++.++.-|..-++. .|-.+ ++.=++.|+....++.+=++..|
T Consensus 120 ~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~-~M~~~---~~~W~~~l~~~l~~~~k~ir~~a 195 (372)
T PF12231_consen 120 KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ-QMIKH---ADIWFPILFPDLLSSAKDIRTKA 195 (372)
T ss_pred CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHhhcchHHHHHH
Confidence 466777777777777777788886 444 6778999999999888877 66544 45555666666677778888888
Q ss_pred HHHHHHHHHhcCchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 175 DRALNTMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 175 ~~AL~~Mv~~~s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
...+..+...+.+.+.+..... ..+.....- +...++..-++.|=..+-......++=..+..++.+..-+-..+..
T Consensus 196 ~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n 273 (372)
T PF12231_consen 196 ISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLN 273 (372)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHh
Confidence 8888888877777655555432 222221111 1222222222221111100112455666667777665578889999
Q ss_pred HHHHHHHHHhccchh----hhHHHHHHHHHhcC
Q 022417 254 SMVNSMYNAFTENEE----HKQEAWQSFCQSNL 282 (297)
Q Consensus 254 k~l~~L~~~~~~~~~----~~~~~~~~~~~~~l 282 (297)
..+......|-.... +...+|..|+-..-
T Consensus 274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999977653 47799999998433
No 120
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.46 E-value=12 Score=30.89 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=50.8
Q ss_pred cHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 022417 69 MIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLE--KVMAVVVKAMKNPRSALCKTSIMAASDIFS 138 (297)
Q Consensus 69 ~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~--~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~ 138 (297)
.++.++..| .|.|=....=|++.|-.+++|||+--. .+. ..=..|...|.+..+.|-++|+.|++.|..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-IIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-HHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 466677777 555666777799999999999997322 121 233577888999999999999999998864
No 121
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.46 E-value=74 Score=30.21 Aligned_cols=177 Identities=14% Similarity=0.078 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhChhhh-hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc
Q 022417 87 ESLNNARRFALHHSSLL-EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ 165 (297)
Q Consensus 87 eaL~~LRrLa~~h~e~l-~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~ 165 (297)
.+|..+-....+|-..+ ...-.+++..+.+.+++-++.|=|.-+.+++++|...++.......+.+-..+..+++++..
T Consensus 38 ~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 117 (339)
T PF12074_consen 38 AALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASA 117 (339)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 33443333334444444 23346788899999999999999999999999997322322222222344444455555433
Q ss_pred ccHHHH---H--HHHHHHHHHHHhcCchhHHH---HHHh-hccCC-----CHHHHHH-----HHHHHHHHHHhhCch---
Q 022417 166 DKKFVC---E--EADRALNTMVESITPLPLLQ---KLKT-YVKHT-----NPRIRAK-----AAISISICVTKMGLE--- 223 (297)
Q Consensus 166 sn~FI~---e--~A~~AL~~Mv~~~s~~kll~---~L~~-~~~hK-----n~~VR~~-----aA~~L~~~v~~~g~~--- 223 (297)
.. .-+ . .+.-++.. .......++-. ..+. ..+.| |++|=.+ -..|+...++.+-..
T Consensus 118 ~p-~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~ 195 (339)
T PF12074_consen 118 NP-LQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPS 195 (339)
T ss_pred CC-CCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchh
Confidence 11 001 0 11111111 00000000000 0000 01111 1233222 123344444332211
Q ss_pred hhhhccHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAAGLLNDR--LPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~--~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.....-...+.++..-++... .+++|..|.+++..++...+.
T Consensus 196 ~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 196 ELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred hhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 111111467888888899999 899999999988877665543
No 122
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.98 E-value=60 Score=34.08 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHh--hChhhh-----------hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 86 CESLNNARRFAL--HHSSLL-----------EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 86 ~eaL~~LRrLa~--~h~e~l-----------~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
.+++..+|..+. .|-.+. .+.-+..-..|.+...+.-|-+=-++..+++--|-.-|+
T Consensus 480 ~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------- 549 (926)
T COG5116 480 VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN---------- 549 (926)
T ss_pred HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc----------
Confidence 577777777773 222221 122223334555666678888888888888877766666
Q ss_pred HHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 153 DNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 153 d~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
-.++..||+-+ ++.|.=|+.+|--||..+|-. .+.-++..+.....+-|+-||.-+|..|-..|..-| ..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------DK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec-CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------cH
Confidence 23567777774 568999999999999887422 244455555566778999999999988877666555 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 232 SLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 232 ~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..+..+..+..|.+-=||+.|--++.+
T Consensus 621 ~a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 621 VATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 455666667777777777777666554
No 123
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=73.73 E-value=98 Score=33.51 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=103.9
Q ss_pred HHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh-----hHHHHHHHHHHHhc
Q 022417 90 NNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD-----ALDNLVLQLLMKAS 164 (297)
Q Consensus 90 ~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~-----~ld~ll~~LL~Ka~ 164 (297)
+.+++++.-.|+++...++..+..-+..-++-|=+..-.|+--+--+-+.++...+-.... ..-.....||.+.+
T Consensus 421 ~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq 500 (980)
T KOG2021|consen 421 NFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ 500 (980)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc
Confidence 4567888888998877777766666666666777777776665555555554433322211 11122233333332
Q ss_pred c---ccHHHHHHHHHHHHHHHHhc---C-chh----HHHHHH--hhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 165 Q---DKKFVCEEADRALNTMVESI---T-PLP----LLQKLK--TYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 165 ~---sn~FI~e~A~~AL~~Mv~~~---s-~~k----ll~~L~--~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
- +.+-|.- .-++.+|.+. + .+. ++.++. +|..|+|-.||.++..++++.++.+. ..+..+ .+
T Consensus 501 v~~h~h~lVqL---lfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlvpf-ie 575 (980)
T KOG2021|consen 501 VLAHDHELVQL---LFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLVPF-IE 575 (980)
T ss_pred cccCCchHHHH---HHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHHHH-HH
Confidence 1 2222211 1122333321 1 122 233332 58999999999999999999999755 233334 67
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc--------hhhhHHHHHHHHHhcCChhhHHHH
Q 022417 232 SLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN--------EEHKQEAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 232 ~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~--------~~~~~~~~~~~~~~~l~~~~a~~~ 290 (297)
.++..+..+++...|-.-...+.....=...|-.+ ++-.+|.=+.+|..-|.|.-.+.+
T Consensus 576 ~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~ 642 (980)
T KOG2021|consen 576 EILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQI 642 (980)
T ss_pred HHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHH
Confidence 78887877775433332211221111000111000 123556667777777776544433
No 124
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.08 E-value=1.1e+02 Score=36.26 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch--hhHHHHHHHHHH
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS--DALDNLVLQLLM 161 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~--~~ld~ll~~LL~ 161 (297)
++..+.+.+.+-|..|=.-|+.++-+++..+|. .+.++. .-+..+|.+++.
T Consensus 1348 LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~-~Fs~~~W~~if~~VLFPIFd 1400 (1780)
T PLN03076 1348 LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH-LFSLPLWERVFESVLFPIFD 1400 (1780)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHH
Confidence 344555566689999999999999999999999 898751 124445555543
No 125
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.89 E-value=1.2e+02 Score=32.18 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=49.5
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc--hhhHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMA-VVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST--SDALDNLV 156 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~-~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~--~~~ld~ll 156 (297)
-.|+.++-||..||=++.||+-......++.-. .+...+..+. .-..+.++++--|...|.+ ....+ ...++.++
T Consensus 556 wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 556 WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESIL 633 (745)
T ss_pred CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHh
Confidence 345669999999999999888654433332222 2333334333 4445555555555555444 22222 01122333
Q ss_pred HHHHH-HhccccHHHHHHHHHHHH
Q 022417 157 LQLLM-KASQDKKFVCEEADRALN 179 (297)
Q Consensus 157 ~~LL~-Ka~~sn~FI~e~A~~AL~ 179 (297)
..+.. ++++.+.+-...|+-||.
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln 657 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALN 657 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHH
Confidence 22222 223344555555666665
No 126
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.52 E-value=90 Score=33.88 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 107 LEKVMAVVVKAMKN-PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 107 L~~i~~~v~~~vkn-LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
+++|.+.+..-|++ -| +++-.|++++|......+. +. +.|+..|+.-..+.+.-|-.++-..+..|++.-
T Consensus 390 i~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~s--v~------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 390 ISEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGS--VT------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCc--hh------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 46677777777775 45 5999999999999988777 22 457777777777766667777777788887765
Q ss_pred Cch--hHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 022417 186 TPL--PLLQKLKTYV-KHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSM 255 (297)
Q Consensus 186 s~~--kll~~L~~~~-~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~ 255 (297)
+.. ++|..|.... +-.-|.-|+.+--++...++.+ .+ -..-+++.+++--.|-.+|||...-.+
T Consensus 461 p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~v--pr----i~PDVLR~laksFs~E~~evKlQILnL 527 (968)
T KOG1060|consen 461 PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIV--PR----IAPDVLRKLAKSFSDEGDEVKLQILNL 527 (968)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc--ch----hchHHHHHHHHhhccccchhhHHHHHh
Confidence 543 4666665433 2344444443322222222221 11 123444444454555566666554433
No 127
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=72.42 E-value=52 Score=31.41 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhhChhhhh----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 83 TNVCESLNNARRFALHHSSLLE----PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~----~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+-+..=.+.||.+..++++.+. ..+..++..+.-.++..-..|+.+++.++.+|+..+.+
T Consensus 135 e~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 135 EHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5556667889999998887664 57899999999999999999999999999999998777
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.36 E-value=86 Score=33.10 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----c-----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----P-----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----~-----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
++.++...|. ...|.-+.+-.-+-|...+.+-. . ...+.++++|..+|-..||..+.+.|..+...++.
T Consensus 47 flr~vn~IL~--~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e 124 (885)
T COG5218 47 FLRVVNTILA--CKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE 124 (885)
T ss_pred HHHHHHHhhc--cccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch
Confidence 5555544432 12223344444444555555422 1 23566678899999999999999999888887774
Q ss_pred hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 223 EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 223 ~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
|.+--..-++.-+.+-+-|+-+-||.-|-++++.+++.-+..+
T Consensus 125 --IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 125 --IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred --HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 1111135566666777889999999999999998886555433
No 129
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=72.04 E-value=84 Score=29.13 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=97.6
Q ss_pred HHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 71 PCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK--NPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 71 ~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk--nLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.-+...|++.+=..+..||+.+--|+...... ..++..+..|.+.+. .+-|.|...|+..+..|...-..+.+=
T Consensus 57 ~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~--~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-- 132 (254)
T PF04826_consen 57 SLIGSLLNDPNPSVREKALNALNNLSVNDENQ--EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-- 132 (254)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH--
Confidence 34445667777777788888888887644322 123334444444332 468899999999998885332111111
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh------cCchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhC
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES------ITPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~------~s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g 221 (297)
...+..++ .||. .++.-++..+-++|--+.++ +=..+++..+..-.. +-+..+...+-.++.++-+.+.
T Consensus 133 ~~~i~~ll-~LL~---~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 133 ANYIPDLL-SLLS---SGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HhhHHHHH-HHHH---cCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 22344432 3333 34444666666666544332 222344555544332 3356666667777888877776
Q ss_pred chhhh----hc----------cHHHHHHHHHHhccCCCHHHHH
Q 022417 222 LEGMK----EL----------GLVSLVQVAAGLLNDRLPEARE 250 (297)
Q Consensus 222 ~~~l~----~~----------~~~~ll~~~a~~l~D~~pE~R~ 250 (297)
.+... .| +.+++.+-+..++...+||||.
T Consensus 209 ~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~ 251 (254)
T PF04826_consen 209 KEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKE 251 (254)
T ss_pred cccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhh
Confidence 55311 12 3466777777777888888875
No 130
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=71.24 E-value=1.1e+02 Score=30.09 Aligned_cols=188 Identities=14% Similarity=0.110 Sum_probs=118.9
Q ss_pred CccccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHcCC
Q 022417 65 DPESMIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM-KNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 65 ~pe~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v-knLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+.+..+..++... .+.++..+..++..+--|+-.+++ .+.+.+++..+...+ .+-.+.....++..+.-+.+++=-
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~ 263 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVM 263 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHH
Confidence 4444566666554 556788888888877777754332 124555555555555 556666667777777777665322
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC---------------c----hhHHHHHHhhccCCCH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT---------------P----LPLLQKLKTYVKHTNP 203 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s---------------~----~kll~~L~~~~~hKn~ 203 (297)
.-++. ...++..|+.--++ .=+...+.+++..++.-.. - ..++|.|..+.+.-+.
T Consensus 264 -R~~~~---~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 264 -RGHPL---ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred -cCCch---HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 12332 34455555443333 3356677777766655411 1 1256677666665555
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 204 RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+|...-..|..+++.+..+ +....++.+++.+.+.+.=.++++|..+=.++..+-.
T Consensus 338 ~~k~~yL~ALs~ll~~vP~~-vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 338 EIKSNYLTALSHLLKNVPKS-VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hhHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 57777777888899987744 4444589999999999999999999988777665443
No 131
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.64 E-value=1.6e+02 Score=31.76 Aligned_cols=191 Identities=12% Similarity=0.127 Sum_probs=113.7
Q ss_pred CCCCCCCCCcccc---HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 022417 57 SENLKAIPDPESM---IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAA 133 (297)
Q Consensus 57 ~~eL~Pl~~pe~~---l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl 133 (297)
-+-|.-|.-|..+ -.+++..|++..=-.+..|+..+=++-...||.+.+.++. +..-+.++--+|.-+|..-+
T Consensus 130 L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~Fpr----L~EkLeDpDp~V~SAAV~VI 205 (877)
T KOG1059|consen 130 LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPR----LVEKLEDPDPSVVSAAVSVI 205 (877)
T ss_pred ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHH----HHHhccCCCchHHHHHHHHH
Confidence 3445555555444 3477888888877777788888888888888888776664 55667899999999999999
Q ss_pred HHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHH-H
Q 022417 134 SDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKA-A 210 (297)
Q Consensus 134 ~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~a-A 210 (297)
.||.+.-.+ ..-+ +.+++-.|| +.++|.+|---.-+-..+++..=+ ..|+++-|+.. +++.. -
T Consensus 206 CELArKnPk-nyL~----LAP~ffkll--ttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~l-------i~sT~Am 271 (877)
T KOG1059|consen 206 CELARKNPQ-NYLQ----LAPLFYKLL--VTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITEL-------MESTVAM 271 (877)
T ss_pred HHHHhhCCc-cccc----ccHHHHHHH--hccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHH-------HHhhHHH
Confidence 999976555 3322 223333332 245676664333222222211111 12333333322 22222 3
Q ss_pred HHHHHHHHhhCchhhhhc--c----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 211 ISISICVTKMGLEGMKEL--G----LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 211 ~~L~~~v~~~g~~~l~~~--~----~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-+|+.||..+=...+.++ + ..-.++-+..|+.|.+|-.|+.|--++..+-..+++
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH
Confidence 345556654433334333 1 345566677788888888888888777766555543
No 132
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=70.11 E-value=77 Score=29.40 Aligned_cols=143 Identities=8% Similarity=0.054 Sum_probs=98.5
Q ss_pred cHHHHHhccC-CcCHHHHHHHHHHHHHHHhhC--hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 69 MIPCLIEGLD-SKDWTNVCESLNNARRFALHH--SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 69 ~l~~~l~~L~-s~dW~~~~eaL~~LRrLa~~h--~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
.++.++..|+ ++|=.-+-.++..+-..+.|- .+++.. -..+..|...++++-.+|-..|+.++..|.....+.
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~--~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~-- 88 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD--LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ-- 88 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH--cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH--
Confidence 4667777776 456666666776666665422 222221 224567788899999999999999999887654441
Q ss_pred CcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 146 DSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
+.+...+.+++..+.+ -+.++..++-++|..|.-.-. -.+.++.|.+.+.+.|..+|-.+.++|.++-+.
T Consensus 89 ----~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 ----EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred ----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 1355566666665544 488999999999988842221 135677777777888889999999999887765
No 133
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.02 E-value=21 Score=31.08 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHhccCCcCHHHHHHHH--HHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 71 PCLIEGLDSKDWTNVCESL--NNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 71 ~~~l~~L~s~dW~~~~eaL--~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
..+-..+..-||-..|+.+ +.+..+...| ......+.+.++|-.-=+-|.|+.++...+.. .
T Consensus 88 ~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~- 151 (213)
T PF08713_consen 88 ELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------E- 151 (213)
T ss_dssp HHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------C-
T ss_pred HHHHHHhccCCcchhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------c-
Confidence 3444445555555556655 2223333222 34556778889999999999999887554433 1
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKA 209 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~a 209 (297)
.++.++..+-.-..+...||+.+...+|..+-.. .|..+.+.|.....+=++.+++.+
T Consensus 152 --~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~~~~v~~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 152 --DFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-DPDEVLEFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp --HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--HHHHHHHHHHS-----HHHHHHH
T ss_pred --CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-CHHHHHHHHHHCcccCchhHHHHH
Confidence 2566666655556788999999999999999555 677778877764444444444443
No 134
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=87 Score=33.84 Aligned_cols=133 Identities=21% Similarity=0.274 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhChh-hhh-------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 83 TNVCESLNNARRFALHHSS-LLE-------------PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e-~l~-------------~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
++-+-..+.+|.=.. ||. .+. ..++.+++.|..++.-.-|-|=|+|+.|+..+|..+ . .|-|+
T Consensus 95 ~EMILvcna~RkDLQ-HPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~-~L~pD 171 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQ-HPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-E-HLIPD 171 (948)
T ss_pred HHHHHHHHHHhhhcc-CchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-h-hhcCC
Confidence 444445555566555 553 332 236778889999999999999999999999999873 3 34444
Q ss_pred hhhHHHHHHHHHHHhcc----ccHHHH---HHHHHHHHHHHHhcCc----hhHHHH----HHhhccCCCHHHHHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ----DKKFVC---EEADRALNTMVESITP----LPLLQK----LKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~----sn~FI~---e~A~~AL~~Mv~~~s~----~kll~~----L~~~~~hKn~~VR~~aA~~L 213 (297)
.++++.-.|..-.+ .|.|+. .+=++||.....++.. ...+.. +....-|+||.-+++--+|+
T Consensus 172 ---apeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 172 ---APELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred ---hHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 45666666655444 578875 4556777777666431 122222 23556679999999888889
Q ss_pred HHHHHhhC
Q 022417 214 SICVTKMG 221 (297)
Q Consensus 214 ~~~v~~~g 221 (297)
.+++.--.
T Consensus 249 ~~lL~sts 256 (948)
T KOG1058|consen 249 YNLLSSTS 256 (948)
T ss_pred HHHHhcCC
Confidence 88887654
No 135
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.17 E-value=1.3e+02 Score=32.24 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=80.4
Q ss_pred Ccccc---HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 65 DPESM---IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 65 ~pe~~---l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
+|..+ +..++..-.+.+|.-+.-|+.++-++-. ....+-++..+.+.+++=-+-|=|+|..++..+|..=+
T Consensus 80 ~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 80 KPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred CchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 55554 4456677788899888777765544422 45567888899999999999999999999999996533
Q ss_pred CCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 142 DKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
. .... ..+-+.+..|+. |++.-|...|-.||..+++.-+
T Consensus 154 ~-~~~~--~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 154 D-LVED--SGLVDALKDLLS---DSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred h-hccc--cchhHHHHHHhc---CCCchHHHHHHHHHHHHHHhCC
Confidence 3 2221 135556666655 8899999999999999987653
No 136
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.10 E-value=1.8e+02 Score=31.44 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=117.5
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHHHHH-------HcCCCCCCcch
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEK-VMAVVVKAMKNPRSALCKTSIMAASDIFS-------AFGDKLLDSTS 149 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~-i~~~v~~~vknLRS~Vsk~A~~tl~dLf~-------~l~~~~md~~~ 149 (297)
.+.|=+-+..|+..|-|+..-..+.+.+.+.+ +...-+..|+|.-=.|+-.|+.-=+.+|. .+|. ..|...
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e-~~d~~~ 305 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE-AVDQGL 305 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 36677888999999999998888888888877 55666889998888888888876664443 2333 333221
Q ss_pred h------------hHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCCCHHHHHHHH
Q 022417 150 D------------ALDNLVLQLLMKASQ----DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 150 ~------------~ld~ll~~LL~Ka~~----sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hKn~~VR~~aA 210 (297)
. .+-+.+..||.|-.+ +.=-++.+|..||....++|.- ..+++.+-...++.+=+-|..++
T Consensus 306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHH
Confidence 1 234445555566432 3445889999999988877752 25555555566555555555555
Q ss_pred HHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 211 ISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 211 ~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
..+-.+.+.-...++.. -....++.+.++..|.+--+|..+--.+..+.+
T Consensus 386 mAFGSIl~gp~~~~Lt~-iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTP-IVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred HHHHhhhcCCchhhhhH-HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 55544444333333322 256777788888889999999665544444333
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=67.78 E-value=2e+02 Score=31.75 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=74.6
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
++++-+++.++-|.|=..+.-|=..|+.+...|- ++..|-++...-...+ ..-+-|+.-+...-..+..+.++
T Consensus 3 ~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~--f~~aL~~va~~~~~sl-----~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQNVRSQAETQLKQLELTEG--FGVALAEVAANKDASL-----PLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHhccccchH--HHHHHHHHHhCcccCc-----hHHHHHHHHHHHHHHHhCCChHh
Confidence 4567788888888887777777777777776543 4444444332221111 12233444454444444443333
Q ss_pred cc------hhhHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhcc
Q 022417 147 ST------SDALDNLVLQLLMKAS-QDKKFVCEEADRALNTMVESITP---LPLLQKLKTYVK 199 (297)
Q Consensus 147 ~~------~~~ld~ll~~LL~Ka~-~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~ 199 (297)
.. .+.....+...|.+.. ++|++|+.++..+...+...--| +.+++.+...++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~ 138 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLS 138 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Confidence 22 1234444544444443 69999999999999998877655 367887765544
No 138
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=67.40 E-value=1.3e+02 Score=29.48 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=98.2
Q ss_pred cCHHHHHHHHHHHHHHHhh--ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALH--HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~--h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
+.=.++..||+.+|++..+ .++.+. ..+++.|+....+.+=...+.++.|+.|+.-.-.. +--+.+.+..++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~~~~~~~~---~~vvralvaiae~~~D~lr~~cletL~El~l~~P~--lv~~~gG~~~L~~ 154 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIKKGPKEIP---RGVVRALVAIAEHEDDRLRRICLETLCELALLNPE--LVAECGGIRVLLR 154 (371)
T ss_pred CChHHHHHHHHHHHHHHHhcCCcccCC---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH--HHHHcCCHHHHHH
Confidence 3457899999999999987 444443 34555566666666667788889999998844222 2111223544554
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchh------HHHHHH-hhcc------CCCH--HHHHHHHHHHHHHHHhhCc
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLP------LLQKLK-TYVK------HTNP--RIRAKAAISISICVTKMGL 222 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k------ll~~L~-~~~~------hKn~--~VR~~aA~~L~~~v~~~g~ 222 (297)
.++. ..--+.+..-.++-.+.++-...+ -+..|. +... +.+. .--..++..+..+++.|.
T Consensus 155 ~l~d----~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~- 229 (371)
T PF14664_consen 155 ALID----GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP- 229 (371)
T ss_pred HHHh----ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-
Confidence 4433 221177777777777776643322 223332 2221 2233 234556666777777775
Q ss_pred hhhhhccH--HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 223 EGMKELGL--VSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 223 ~~l~~~~~--~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++..+.. -+-++.+..++.-.++++|.+---++..+
T Consensus 230 -GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 230 -GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred -ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3332211 15566677777788999887765554443
No 139
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=49 Score=38.95 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcCch-------hHHHHHH
Q 022417 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESITPL-------PLLQKLK 195 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~ 195 (297)
+-...|..|++.++..||+ .++.. +.++ .+++.|...+| .|++.+...++..++..+... +-+....
T Consensus 108 q~k~~a~~~l~~~y~~~g~-~~~~~---~edt-~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~ 182 (2067)
T KOG1822|consen 108 QRKLAALSCLGSLYEHYGR-MIGRG---LEDT-VQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIA 182 (2067)
T ss_pred HHHHhhccchHHHHHHhhH-hhcch---HHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3456789999999999999 88875 4444 35566666655 899999999999998887622 2222222
Q ss_pred -hhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 196 -TYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 196 -~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.....++-.||..+++|+......-+ .....-..+.+....-+.+.+.+.++|..--+++..|-...
T Consensus 183 k~~lld~s~~v~iaa~rc~~a~s~~~~-~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 183 KNSLLDRSFNVKIAAARCLKAFSNLGG-PGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred hhhhhhhhHHHHHHhHHHHHHHHhhcC-ccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 35567888899999998777665433 33222235777777778888888888877776666654433
No 140
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=66.69 E-value=2e+02 Score=31.40 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccc
Q 022417 87 ESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQD 166 (297)
Q Consensus 87 eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~s 166 (297)
-++..|--|+.--...+.+.-..+.+.|...+++-++.|--.+.-++-.++.+.+- +.+....+.-....
T Consensus 314 ~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----------~~~~~~I~e~lk~k 383 (815)
T KOG1820|consen 314 LAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----------SKMSEAILEALKGK 383 (815)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----------HHHHHHHHHHhcCC
Confidence 34444444444333334444445555555666666665544444444444432222 12222222223344
Q ss_pred cHHHHHHHHHHHHHHHHhcC--------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 167 KKFVCEEADRALNTMVESIT--------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 167 n~FI~e~A~~AL~~Mv~~~s--------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
|.=++......++.-+.... ...+++++....++++..||..+...+..+.+.+|.+.
T Consensus 384 np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 384 NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455555555554444433 34688888889999999999999999999999988544
No 141
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.51 E-value=15 Score=36.37 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=78.8
Q ss_pred HHHhccCCcCHH-HHHHHHHHHHHHHh---hChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 72 CLIEGLDSKDWT-NVCESLNNARRFAL---HHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 72 ~~l~~L~s~dW~-~~~eaL~~LRrLa~---~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
-++..|+-.|-+ -+|.|..+||-|+. |+-.++. +.+++++..+...==+.||.++ ||.+.-.+-...+...+
T Consensus 337 pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis--ac~a~Lal~d~~k~~ll 414 (550)
T KOG4224|consen 337 PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS--ACIAQLALNDNDKEALL 414 (550)
T ss_pred HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH--HHHHHHHhccccHHHHh
Confidence 355667666655 89999999999995 4444443 3455555555444445566654 33333333333333222
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
|. .+++.|+.-+++.+.=++..|..||..+...+. +.|++... .|.+.-++...++++
T Consensus 415 d~------gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw----d~P~~gi~g~L~Rfl 473 (550)
T KOG4224|consen 415 DS------GIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW----DHPVQGIQGRLARFL 473 (550)
T ss_pred hc------CCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh----cCcchhHHHHHHHHH
Confidence 22 255566666788888888889999988877764 56665543 455556666665544
No 142
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=66.39 E-value=81 Score=26.72 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh-cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES-ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~-~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
|||+ +...-+..+|.+...+..=+..+|.-| ++| -....+.+.|..-+..-|-..|...-.++..+++..-..
T Consensus 1 mDpF--E~r~~F~~~L~~L~aS~qSi~kaa~fA----lk~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~ 74 (139)
T PF12243_consen 1 MDPF--EVRMQFTQLLRRLNASQQSIQKAAQFA----LKNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKS 74 (139)
T ss_pred CChH--HHHHHHHHHHHHcchhHHHHHHHHHHH----HHccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhc
Confidence 5666 456667777777666655455444444 444 235578888887776668888999998888877753222
Q ss_pred h--------hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 224 G--------MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 224 ~--------l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+ +...++.++++.++.-=+.|- .-+..+++.+..++...--.
T Consensus 75 ~~~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~-~N~~~~~kvL~~~~~k~~l~ 124 (139)
T PF12243_consen 75 KKYNYPYVSMLQRDLPRIVDAVAPPDNSGA-ANLKSVRKVLKNWSKKKILD 124 (139)
T ss_pred ccccchhHHHHHHHHHHHHHHhCCCCCccc-hHHHHHHHHHHHHHHcCCCC
Confidence 2 112245566655553222222 56777888887776655433
No 143
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=1.9e+02 Score=31.33 Aligned_cols=168 Identities=13% Similarity=0.149 Sum_probs=99.3
Q ss_pred ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHH
Q 022417 76 GLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNL 155 (297)
Q Consensus 76 ~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~l 155 (297)
.|+++.=....|+-..+..|.-..+..+.+ .+..+-..++++|+++==.|+.++-++...... .......+++.+
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~-~v~~cN~elE~l 327 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ-AVTVCNLDLESL 327 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc-cccccchhHHhh
Confidence 445556666677666666665555555555 556677788999999999999999999988666 333322234444
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHh---hccCCCHHH-----HHH----------HHHHHHHHH
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKT---YVKHTNPRI-----RAK----------AAISISICV 217 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~---~~~hKn~~V-----R~~----------aA~~L~~~v 217 (297)
+ .+.|+||+.-|-.+|..-...-+-.+++..+.. -.++-+..| |+. .-.+|.+++
T Consensus 328 I-------td~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L 400 (865)
T KOG1078|consen 328 I-------TDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML 400 (865)
T ss_pred h-------cccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4 567888888777777665555555566655543 223322222 221 122333444
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
..-|- .+| ...+++++...+.+ +|+.++.|..-++.+.
T Consensus 401 r~eGg---~e~-K~aivd~Ii~iie~-~pdsKe~~L~~LCefI 438 (865)
T KOG1078|consen 401 REEGG---FEF-KRAIVDAIIDIIEE-NPDSKERGLEHLCEFI 438 (865)
T ss_pred HhccC---chH-HHHHHHHHHHHHHh-CcchhhHHHHHHHHHH
Confidence 33221 111 24455555555544 7888888877776643
No 144
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.42 E-value=2e+02 Score=30.91 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhh------------------------------HHHHHHHHHHHHHhcCcc
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLE------------------------------PNLEKVMAVVVKAMKNPR 122 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~------------------------------~~L~~i~~~v~~~vknLR 122 (297)
++..+++.. +.++=+|.+++-+..+.|+.+. ..+.+++..+..-..+--
T Consensus 285 l~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD 363 (734)
T KOG1061|consen 285 LVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVD 363 (734)
T ss_pred ceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhC
Confidence 334556666 9999999999999888887543 124556666666666777
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc--hhHHHHHHhhcc-
Q 022417 123 SALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP--LPLLQKLKTYVK- 199 (297)
Q Consensus 123 S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--~kll~~L~~~~~- 199 (297)
-+.+|.|+.++|++...+-. . . .|+..||.=..-.-..+-.++-..+.-+..+++. ..+++.+.....
T Consensus 364 ~~fvrkaIraig~~aik~e~-~-~-------~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~s 434 (734)
T KOG1061|consen 364 VDFVRKAVRAIGRLAIKAEQ-S-N-------DCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDS 434 (734)
T ss_pred HHHHHHHHHHhhhhhhhhhh-h-h-------hhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccc
Confidence 78999999999999977666 3 1 2333333322223345666666777777777652 334444443332
Q ss_pred CCCHHHHH
Q 022417 200 HTNPRIRA 207 (297)
Q Consensus 200 hKn~~VR~ 207 (297)
=.+|..|.
T Consensus 435 l~epeak~ 442 (734)
T KOG1061|consen 435 LQEPEAKA 442 (734)
T ss_pred cCChHHHH
Confidence 35565554
No 145
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.04 E-value=1.1e+02 Score=35.18 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc--chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS--TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~--~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
+...+.+.+.|=|-.|=.-||+|+=-+|..-|. .+.+ +...+..++.+||.+....| +.|--++=+
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~-~l~~~aW~s~~w~vi~pLLd~~~~q~--~~ewngkei--------- 1065 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGS-KLGTNAWASCCWLVIMPLLDSQPIQN--VSEWNGKEI--------- 1065 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcc-cCChhHHHHHHHHHHHHHhccccccc--hhhhcchhH---------
Confidence 445778999999999999999999999988888 7777 44557788888888664433 111111111
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc--cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-HHHhc
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL--GLVSLVQVAAGLLNDRLPEAREAARSMVNSM-YNAFT 264 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~--~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L-~~~~~ 264 (297)
+..-..-...+-...|+++..=.+.+ ..+..+ +-+.+++.+.+++.|.+||+-..+-++|..+ ++...
T Consensus 1066 -------qkqwtet~~ltisgIaklf~e~fk~l--lnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~ 1136 (1610)
T KOG1848|consen 1066 -------QKQWTETSCLTISGIAKLFSENFKLL--LNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIE 1136 (1610)
T ss_pred -------hhhhhhhhhhhHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhh
Confidence 00000000000000111111100000 000111 3689999999999999999999999998875 44443
Q ss_pred cchh---------hhHHHHHHHHHhcCC
Q 022417 265 ENEE---------HKQEAWQSFCQSNLQ 283 (297)
Q Consensus 265 ~~~~---------~~~~~~~~~~~~~l~ 283 (297)
.+.. .--..|..||+.+-+
T Consensus 1137 ~~~ln~~~~~k~n~vf~~y~~~~~~~ss 1164 (1610)
T KOG1848|consen 1137 FGKLNATFTLKINLVFINYGRFCEVSSS 1164 (1610)
T ss_pred hccccchHHHHhhhhhhhHhhhcccccc
Confidence 3322 133678888877665
No 146
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.56 E-value=23 Score=34.49 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=53.2
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh--hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 192 QKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 192 ~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~--l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..+..++.|.++.+|..+|..+..|+..-.... +.+ +++.+++.++. .|.+-++|..|--++..|-+.+.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCc
Confidence 334449999999999999999999998754332 233 45677776665 88899999999988888776654
No 147
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=63.98 E-value=2e+02 Score=30.47 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHH---HcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-------HHHH
Q 022417 124 ALCKTSIMAASDIFS---AFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-------LLQK 193 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~---~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~ 193 (297)
-++++||.|+--+.+ .|+. .++.. +-.+.++ +|| .+...||...+--|+--+|---++.| -+..
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~t-g~~~~-dv~~plv-qll---~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRT-GLKRN-DVAQPLV-QLL---MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCccc-hhHHHHH-HHh---hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 467788888776654 3566 44432 1233333 333 56778888888777766665555543 3567
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 194 LKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 194 L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
|.++.+.+-+.+|..+-..|-++.-.-.......+..+--.+.+..+++|.++++-+.+-+++
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 788999999999988887777776554433333344455667788889999999988655443
No 148
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.85 E-value=63 Score=30.13 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=69.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh---hhhccH-HHHHHHHHHhcc--------CCCHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG---MKELGL-VSLVQVAAGLLN--------DRLPEAREAARSMV 256 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~---l~~~~~-~~ll~~~a~~l~--------D~~pE~R~~aRk~l 256 (297)
-++|.+..-+.+-++.+|..-+.+|..+++++.... +...|+ +.+.+++..++. |.+++.=..+-.++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 357777788888899999999999999999999887 777774 677778888888 88888888888888
Q ss_pred HHHHHHhccch-hhhHHHHHHHHHh
Q 022417 257 NSMYNAFTENE-EHKQEAWQSFCQS 280 (297)
Q Consensus 257 ~~L~~~~~~~~-~~~~~~~~~~~~~ 280 (297)
..|...-..+. ......+..++.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e 223 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILRE 223 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHH
Confidence 88866643222 2233444444444
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.54 E-value=59 Score=27.84 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhChh----hhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 82 WTNVCESLNNARRFALHHSS----LLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 82 W~~~~eaL~~LRrLa~~h~e----~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
++.-+..|..|=..+...|+ +..+.+..++..+++.+++ +.+...++.++..+-..+.. .+.|+...+...+.
T Consensus 85 ~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt-t~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 85 LEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT-TFRPFANKIESALL 161 (165)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc-cccchHHHHHHHHH
Confidence 34444445444444444554 4568899999999998888 88889999999999999999 89988666666665
Q ss_pred HHH
Q 022417 158 QLL 160 (297)
Q Consensus 158 ~LL 160 (297)
.+|
T Consensus 162 ~ll 164 (165)
T PF08167_consen 162 SLL 164 (165)
T ss_pred HHh
Confidence 553
No 150
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.01 E-value=1.3e+02 Score=27.95 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=88.5
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
+=..|.++|+..|-.|+..|-.+...-|.-. +.++.+..+.+.|.. .++.+ ..+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---------------------L~~~ev~~L~~F~~~----rl~D~-~~~ 57 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---------------------LSRQEVQVLLDFFCS----RLDDH-ACV 57 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---------------------ccHHHHHHHHHHHHH----HhccH-hhH
Confidence 3456788999999999988887776444211 233344444444432 12211 012
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHH
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVS 232 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ 232 (297)
...+..|+.=. .-+.|-.+.+..-+..+.+++.. +......|..+-+++..+++... +.+...|-+-
T Consensus 58 ~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~~~~-----------q~~~q~~R~~~~~ll~~l~~~~~-~~l~~~~~~f 124 (262)
T PF14500_consen 58 QPALKGLLALV-KMKNFSPESAVKILRSLFQNVDV-----------QSLPQSTRYAVYQLLDSLLENHR-EALQSMGDDF 124 (262)
T ss_pred HHHHHHHHHHH-hCcCCChhhHHHHHHHHHHhCCh-----------hhhhHHHHHHHHHHHHHHHHHhH-HHHHhchhHH
Confidence 22222221111 22334444444545555444433 33455678888888888888754 3344445455
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+...+.-+-++++|..=-..-+++..+-..|.-
T Consensus 125 v~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 125 VYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 555555666889999888888888888777765
No 151
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.48 E-value=51 Score=30.66 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=37.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC
Q 022417 193 KLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND 243 (297)
Q Consensus 193 ~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D 243 (297)
.|-.++++-++.+|.++-.+|..++++.....+....+..+++-...-+.|
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D 53 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD 53 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc
Confidence 456788899999999999999999999886665544455555555555543
No 152
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=62.16 E-value=1.5e+02 Score=28.22 Aligned_cols=96 Identities=19% Similarity=0.344 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
.+-+..++..+..- |++-|. .++..|.-++. +. .+..+...|+.. ..+..+|.+|..||.++ ..
T Consensus 186 EeaI~al~~~l~~~-Salfrh---EvAfVfGQl~s----~~--ai~~L~k~L~d~--~E~pMVRhEaAeALGaI----a~ 249 (289)
T KOG0567|consen 186 EEAINALIDGLADD-SALFRH---EVAFVFGQLQS----PA--AIPSLIKVLLDE--TEHPMVRHEAAEALGAI----AD 249 (289)
T ss_pred HHHHHHHHHhcccc-hHHHHH---HHHHHHhhccc----hh--hhHHHHHHHHhh--hcchHHHHHHHHHHHhh----cC
Confidence 34455666666655 777776 56666655555 22 456666555442 36789999999999987 55
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
..++..|..++++-.+.||..+...|+.+-..
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999988877766543
No 153
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=62.03 E-value=78 Score=33.58 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=76.8
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
.++++.|..-.+.....||-...+++..-++.+..+.+ -+.+++-++.++.|.++-.|+..=+.+..|-...+.+-
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~----~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~ 404 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL----NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN 404 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh----cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh
Confidence 35999999988888899999999999999988876554 46788999999999999999999999999877776651
Q ss_pred ---------------hh-hHHHHHHHHHhcCChhhHHHH
Q 022417 268 ---------------EH-KQEAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 268 ---------------~~-~~~~~~~~~~~~l~~~~a~~~ 290 (297)
|| +--.|-..|...+.+-.+.++
T Consensus 405 Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~ 443 (690)
T KOG1243|consen 405 LNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV 443 (690)
T ss_pred hcHHHHHHHHhhCccccCcccccceeeecccccccchhh
Confidence 11 234566666666666654433
No 154
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.83 E-value=53 Score=33.91 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=76.2
Q ss_pred CccccHHHHHhccC--CcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHc
Q 022417 65 DPESMIPCLIEGLD--SKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAF 140 (297)
Q Consensus 65 ~pe~~l~~~l~~L~--s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l 140 (297)
+-.+.++.....++ ...|+..--+|..+|.+++.-+..=...+.+|+ +.+-|+ -+.+-.++|.-+|++.+-+
T Consensus 384 gs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl----~~i~nlp~Q~~~~~ts~ll~g~~~ew~ 459 (559)
T KOG2081|consen 384 GSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVL----KLICNLPEQAPLRYTSILLLGEYSEWV 459 (559)
T ss_pred CcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHH----HHHhCCccchhHHHHHHHHHHHHHHHH
Confidence 33445555555554 458999999999999999876544444444444 444433 3458899999999999987
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 141 GDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 141 ~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
.++ | .+.+.+...+.+..+.+. ++..+..|...++..|.
T Consensus 460 ~~~---p---~~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~ 498 (559)
T KOG2081|consen 460 EQH---P---ELLEPVLRYIRQGLQLKR-LASAAALAFHRICSACR 498 (559)
T ss_pred HhC---c---HHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHH
Confidence 772 3 266777777776666555 77777777777766553
No 155
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=2.8e+02 Score=31.19 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=81.5
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh--------------------------------------HHHH
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE--------------------------------------PNLE 108 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--------------------------------------~~L~ 108 (297)
|..+..+++.|++.|-.-+-.|-+-+-|++.+-|-.+. ..+.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 45678888899888766666666666666655442211 2255
Q ss_pred HHHHHHHHHhc--Ccc------hHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Q 022417 109 KVMAVVVKAMK--NPR------SALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKAS-QDKKFVCEEADRALN 179 (297)
Q Consensus 109 ~i~~~v~~~vk--nLR------S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~-~sn~FI~e~A~~AL~ 179 (297)
+|++.|.+.+. +-| ..|=-.||-.+=-+.+.+...+|+|. +..+...||..+. |.---+|-+|..|+.
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~---l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPV---LQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHH---HHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 77777777665 233 34556788888888888888788875 7778888888886 455668889999999
Q ss_pred HHHHh
Q 022417 180 TMVES 184 (297)
Q Consensus 180 ~Mv~~ 184 (297)
.+|-.
T Consensus 497 E~VGR 501 (1133)
T KOG1943|consen 497 ENVGR 501 (1133)
T ss_pred HHhcc
Confidence 88866
No 156
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=61.01 E-value=83 Score=25.03 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHH
Q 022417 102 LLEPNLEKVMAVVVKAMKN----PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRA 177 (297)
Q Consensus 102 ~l~~~L~~i~~~v~~~vkn----LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~A 177 (297)
++.+++=.++..+...+.+ ---.--+.++.++++|.+..|+ .+.+. .+.+..- | +++-...=+++.+-.+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~-~i~~~---~pQI~a~-L-~sal~~~~l~~~al~~ 77 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS-HISSA---RPQIMAC-L-QSALEIPELREEALSC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH-HHHHH---HHHHHHH-H-HHHhCChhhHHHHHHH
Confidence 3445555555555555665 2223456788899999984444 55543 3333322 2 2333334678888888
Q ss_pred HHHHHHhcCchhHHHHH
Q 022417 178 LNTMVESITPLPLLQKL 194 (297)
Q Consensus 178 L~~Mv~~~s~~kll~~L 194 (297)
...++++..+..+-+.|
T Consensus 78 W~~fi~~L~~~~l~~ll 94 (107)
T PF08064_consen 78 WNCFIKTLDEEDLGPLL 94 (107)
T ss_pred HHHHHHHCCHHHHHHHH
Confidence 88888888887776666
No 157
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.82 E-value=3.4e+02 Score=31.76 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=102.8
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-------cCCCCCCcch
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA-------FGDKLLDSTS 149 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~-------l~~~~md~~~ 149 (297)
+..|=+-|..||..+-+++..||..+. ..+..++..+.....+-+- +|- ++++.+... ++++. ..+.
T Consensus 1235 k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~--~ki--~~l~n~~~yL~eee~~l~~~~-~~w~ 1309 (1692)
T KOG1020|consen 1235 KDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIK--SKI--QLLQNLELYLLEEEKKLRNKG-KNWT 1309 (1692)
T ss_pred HhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHH--HHH--HHHHHHHHHHHHHHHHHHhcc-cchh
Confidence 567789999999999999999999987 4677777777666665543 333 333333322 23211 1110
Q ss_pred hhHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 150 DALDNLVLQLLMKASQDK--KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn--~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
.. -=...+++..+++ .|...-. .+++ ..-++.++..+-+++-++|..+-+.+-.++ +.| +..
T Consensus 1310 ~~---~k~edlkem~~v~sg~~s~~~~----~~i~-----Qlfl~~ILe~cl~~d~~~r~~aikvl~liL-~QG---LVh 1373 (1692)
T KOG1020|consen 1310 KS---NKSEDLKEMLDVSSGMGSSDGV----SAIM-----QLFLDNILESCLDRDLQVRLVAIKVLKLIL-NQG---LVH 1373 (1692)
T ss_pred hh---hhHHHHHhhcccccccccccch----HHHH-----HHHHHHHHHHHhccchHHHHHHHHHHHHHH-Hcc---CCC
Confidence 00 0001122222211 1111111 1111 123555666777999999987766554444 333 211
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
-...++.+-.+-.|..++.|.-|-..+.-+++.| +.|+.+.++-..
T Consensus 1374 --P~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY-----------~gfv~sk~~~G~ 1419 (1692)
T KOG1020|consen 1374 --PVHCVPTLIALETDPSQAIRHVADELLKEIDEKY-----------EGFVFSKLSQGV 1419 (1692)
T ss_pred --ccchhhhheeecCChHHHHHHHHHHHHHHHHHhh-----------HHHHHHHHHhhh
Confidence 3567788888899999999999999888887744 556666555443
No 158
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=57.82 E-value=97 Score=26.20 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhh----------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 81 DWTNVCESLNNARRFALHHSSLLE----------PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~----------~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
++..+.=||..+..+...|+..+. ..-..+++.+.+.+.+--..+...++..+.-++..++. .+-.+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~-~Lk~e-- 111 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRS-HLKLE-- 111 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHH--
Confidence 456777788888887766655554 22366778888888766689999999999999999988 66654
Q ss_pred hHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHhcCchhHHHHH
Q 022417 151 ALDNLVLQLLMKASQDKK-FVCEEADRALNTMVESITPLPLLQKL 194 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~-FI~e~A~~AL~~Mv~~~s~~kll~~L 194 (297)
++-.+..++.+..++.. -.. .=..+|+.+..-|..+..+-.+
T Consensus 112 -le~~l~~i~~~il~~~~~~~~-~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 112 -LEVFLSHIILRILESDNSSLW-QKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred -HHHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHHHhChhHHHHH
Confidence 66677777766654221 111 2233566666666655555444
No 159
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=66 Score=34.62 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=75.2
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH
Q 022417 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL 191 (297)
Q Consensus 112 ~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll 191 (297)
+.+--.|.+..=-|-|+|..++|.++ +++ |+ .+..++..| +-+=|.|||-.+.-||..-|....-...+
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialGFVl--~~d----p~--~~~s~V~lL---ses~N~HVRyGaA~ALGIaCAGtG~~eAi 626 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALGFVL--FRD----PE--QLPSTVSLL---SESYNPHVRYGAAMALGIACAGTGLKEAI 626 (929)
T ss_pred HhhcccccccchHHHHHHHHHheeeE--ecC----hh--hchHHHHHH---hhhcChhhhhhHHHHHhhhhcCCCcHHHH
Confidence 33444588899999999999999765 232 22 345555333 23579999999999999998888888889
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 192 QKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 192 ~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
..|-+-.++++.-||..+..-+..+.-+..
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 888888899999999988777776666554
No 160
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=57.37 E-value=53 Score=26.61 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=47.5
Q ss_pred hhHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhCchhhhh-c-cHHHHHHHHHHhcc------CCCHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYV---KHTNPRIRAKAAISISICVTKMGLEGMKE-L-GLVSLVQVAAGLLN------DRLPEAREAARSMV 256 (297)
Q Consensus 188 ~kll~~L~~~~---~hKn~~VR~~aA~~L~~~v~~~g~~~l~~-~-~~~~ll~~~a~~l~------D~~pE~R~~aRk~l 256 (297)
..++..|..-+ ++++..+-.++..+|..++.. |.+.+.. + ..-..++.+..|-. |....+|..|+.++
T Consensus 38 ~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n-G~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~ 116 (125)
T PF01417_consen 38 QEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN-GSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEIL 116 (125)
T ss_dssp HHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH-S-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHH
Confidence 45677776655 789999999999999998886 5555433 2 22344555555532 22346999999998
Q ss_pred HHHHH
Q 022417 257 NSMYN 261 (297)
Q Consensus 257 ~~L~~ 261 (297)
..|.+
T Consensus 117 ~lL~d 121 (125)
T PF01417_consen 117 ELLND 121 (125)
T ss_dssp HHHTS
T ss_pred HHhCC
Confidence 87753
No 161
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.36 E-value=49 Score=27.32 Aligned_cols=88 Identities=26% Similarity=0.252 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhCchh-hhhccHHHHHHHHHHhccC
Q 022417 166 DKKFVCEEADRALNTMVESITPLPLLQKLKTYV-KHTNPRIRAKAAISISICVTKMGLEG-MKELGLVSLVQVAAGLLND 243 (297)
Q Consensus 166 sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~-~hKn~~VR~~aA~~L~~~v~~~g~~~-l~~~~~~~ll~~~a~~l~D 243 (297)
+.+|=+|.|.+- .-.--+++..|...+ ++.++.+-+-++.=|...++.....+ +.+ --..-..+.++++.
T Consensus 26 se~FW~ENa~kf------~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~--~lg~K~~vM~Lm~h 97 (119)
T PF11698_consen 26 SEKFWRENADKF------EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIE--KLGAKERVMELMNH 97 (119)
T ss_dssp -HHHHHHHSGGG------SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHH--HHSHHHHHHHHTS-
T ss_pred CccHHHHHHHHH------HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHH--hcChHHHHHHHhcC
Confidence 467777776553 112234555555444 34466666666665666666543221 221 12234557778889
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 022417 244 RLPEAREAARSMVNSMYN 261 (297)
Q Consensus 244 ~~pE~R~~aRk~l~~L~~ 261 (297)
.++|+|+.|-.++..|-.
T Consensus 98 ~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 98 EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999988877643
No 162
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=56.76 E-value=2.1e+02 Score=28.38 Aligned_cols=184 Identities=21% Similarity=0.155 Sum_probs=106.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHh--hChhhhhHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHcCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFAL--HHSSLLEPNLEKVMAVVVKAM-KNPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~--~h~e~l~~~L~~i~~~v~~~v-knLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
+..+..+..+|-|+|-+.+..|.-..|++.. +||.+=.-.=.-+++..+..| .+-|--+-=+|-=++..+.+.-...
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 3457799999999999999999999999883 555321100011222233333 2233333347777777776542221
Q ss_pred ---CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-----------HhcCchhHHHHHHhhccCCCHHHHHHH
Q 022417 144 ---LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMV-----------ESITPLPLLQKLKTYVKHTNPRIRAKA 209 (297)
Q Consensus 144 ---~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv-----------~~~s~~kll~~L~~~~~hKn~~VR~~a 209 (297)
..|.. ...++.+|| .+++.=|+|.+-.||..+. ++---..+|..|.+...| ..+-+.+
T Consensus 150 TkvVvd~~---AVPlfiqlL---~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~--ismlRn~ 221 (526)
T COG5064 150 TKVVVDAG---AVPLFIQLL---SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH--ISMLRNA 221 (526)
T ss_pred eEEEEeCC---chHHHHHHH---cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch--HHHHHHh
Confidence 12222 234455554 4788889999999997432 222233455555533322 2233334
Q ss_pred HHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 210 AISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 210 A~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
--.|++++..-.++- .-..+.+.++++++++.-.+||+-.-|-=++..|
T Consensus 222 TWtLSNlcRGknP~P-~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 222 TWTLSNLCRGKNPPP-DWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhhCCCCCCC-chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 445777776433221 1123678889999999999999987766555544
No 163
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=55.95 E-value=70 Score=25.77 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLL 160 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL 160 (297)
.-.++..++..+..|.+-+..-+...+++|+..+...+...- +...|+.|-..+-..+....+.+- +|.++..++
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~~~l~~l---l~~~~~~i~ 102 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKEEELGPL---LDQIFAAIL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHH
Confidence 567888888888888887777777788888888877777542 666888888888888777444432 444444443
No 164
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.94 E-value=84 Score=31.97 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=60.9
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+..++.+|..-+++|++.|...+..+|..|++.-|...-....-+.++.-+.+.... .+-.+|+-.-.++..-+.+|+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 456788888889999999999999999999999995432233335555555555543 588899998888888888888
Q ss_pred cc
Q 022417 265 EN 266 (297)
Q Consensus 265 ~~ 266 (297)
..
T Consensus 116 ~~ 117 (470)
T KOG1087|consen 116 GP 117 (470)
T ss_pred CC
Confidence 73
No 165
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=55.75 E-value=88 Score=25.18 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHHHHHHHhcCcc---h-HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHH
Q 022417 101 SLLEPNLEKVMAVVVKAMKNPR---S-ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADR 176 (297)
Q Consensus 101 e~l~~~L~~i~~~v~~~vknLR---S-~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~ 176 (297)
+++.+++=.++..+...+.|.+ + .--|.++.++++|-+..|+ .+... ...+ ..+|.-+.+ ..=+++.+=.
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~-~i~~a---~pQI-~acL~saL~-~~eL~~~al~ 76 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGK-HISSA---LPQI-MACLQSALE-IPELRSLALR 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHH-HHHHHHHhC-chhHHHHHHH
Confidence 4555666667777777788777 2 2367899999999997776 55543 3333 334443444 3348888888
Q ss_pred HHHHHHHhcCchhHHHHH
Q 022417 177 ALNTMVESITPLPLLQKL 194 (297)
Q Consensus 177 AL~~Mv~~~s~~kll~~L 194 (297)
+...++.+..+..+-+.|
T Consensus 77 ~W~~~i~~L~~~~l~~ll 94 (107)
T smart00802 77 CWHVLIKTLKEEELGPLL 94 (107)
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 999998888887766665
No 166
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=55.40 E-value=8.8 Score=27.64 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=33.9
Q ss_pred cccHHHHHhccCCcCHHHHHHHHH---HHHHHHhhChhhhhHHHH
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLN---NARRFALHHSSLLEPNLE 108 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~---~LRrLa~~h~e~l~~~L~ 108 (297)
++.+..+-..|..+|...-++||+ .||.|+.+.||+..+-+|
T Consensus 11 ~~~va~LA~RLE~DdY~~pF~~L~DWhlLRalA~~RpeL~~pY~h 55 (57)
T PF10742_consen 11 EEDVAKLAKRLEEDDYPNPFDGLKDWHLLRALAFQRPELVEPYIH 55 (57)
T ss_pred HHHHHHHHHhhhhccCCchhhhhhHHHHHHHHHhcChhccchhHh
Confidence 345667778889999999999986 589999999998876544
No 167
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.25 E-value=92 Score=33.56 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=42.2
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH--------------HH
Q 022417 195 KTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS--------------MY 260 (297)
Q Consensus 195 ~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~--------------L~ 260 (297)
.+.+.+-+..||+.+..-+..++-. |.-+++. -+..++.++.|-+.+.-+.||..+.- ++
T Consensus 977 yrrL~De~~~V~rtclmti~fLila-gq~KVKG-----qlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidif 1050 (1128)
T COG5098 977 YRRLGDEDADVRRTCLMTIHFLILA-GQLKVKG-----QLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIF 1050 (1128)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHc-cceeecc-----chhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHH
Confidence 3444555666776655444444431 2112221 23456778888888888888866543 34
Q ss_pred HHhccchhhhHHHHHH
Q 022417 261 NAFTENEEHKQEAWQS 276 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (297)
+.....+|.++++|..
T Consensus 1051 s~ls~~ae~g~e~fk~ 1066 (1128)
T COG5098 1051 STLSSDAENGQEPFKL 1066 (1128)
T ss_pred HHcCchhhcCCCcHHH
Confidence 4445555656666554
No 168
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=54.67 E-value=2.4e+02 Score=28.30 Aligned_cols=154 Identities=12% Similarity=0.164 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc
Q 022417 87 ESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ 165 (297)
Q Consensus 87 eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~ 165 (297)
+-+..+.-+.+|+...+. ..+..++..+...+++..+..-=.+|..+-|..-.||. .-+ +.+..++..| ..+-.
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-iP~---~sl~~~i~vL-Csi~~ 227 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-IPS---ESLSPCIEVL-CSIVN 227 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-CCh---HHHHHHHHHH-hhHhc
Confidence 345555556666665555 56788888888888877777665777777777777887 332 2477776544 33322
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhHHHHHHh------hccCCCHHHHHHHHHHHHHHHHhhCchhhhh--ccHHHHHHHH
Q 022417 166 DKKFVCEEADRALNTMVESITPLPLLQKLKT------YVKHTNPRIRAKAAISISICVTKMGLEGMKE--LGLVSLVQVA 237 (297)
Q Consensus 166 sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~------~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~--~~~~~ll~~~ 237 (297)
.. =+++.+-+++..++.+=.....+..|.. ....++..+-+-+..++..++-..|..++-. +....++...
T Consensus 228 ~~-~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl 306 (464)
T PF11864_consen 228 SV-SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSL 306 (464)
T ss_pred cc-ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHH
Confidence 22 4566677777777765444444444433 2335677777778888888877766555533 4445577777
Q ss_pred HHhccCCCH
Q 022417 238 AGLLNDRLP 246 (297)
Q Consensus 238 a~~l~D~~p 246 (297)
...+.-+++
T Consensus 307 ~~al~~~~~ 315 (464)
T PF11864_consen 307 LNALKSNSP 315 (464)
T ss_pred HHHHhCCCC
Confidence 777765444
No 169
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.87 E-value=4.3e+02 Score=31.03 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=59.9
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+++..+..+..+-++.+|..+-..+..+++++|.. .... +..+++.+++++.|-+-++-...++....+.+.+|
T Consensus 1541 pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~-~~~l-L~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1541 PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGEN-VIVL-LPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcch-hHHh-hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 45555555666777788888888888888888843 2222 78999999999999999999999999999999998
No 170
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.81 E-value=19 Score=23.94 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSM 255 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~ 255 (297)
.+.+.+.+.+.+.|.+|.+|+++=.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 46899999999999999999998543
No 171
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.73 E-value=3.3e+02 Score=29.46 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=121.5
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
...+..+.+.+++.|-..+.+|+-.+--|..+.-+.-...++ ++..|.+.+.+=-|.+-++...=|....+
T Consensus 35 s~~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f~-----iveVmsssk~~~krigylaa~qSf~~~td---- 105 (877)
T KOG1059|consen 35 SQCLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAFH-----IVEVMSSSKFQQKRIGYLAASQSFHDDTD---- 105 (877)
T ss_pred HHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhhh-----hhhhhhhhhhHHHHHhHHHHHHhhcCCcc----
Confidence 345667777888899999999998888888775554444443 55667777777777776666555533222
Q ss_pred cchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 147 STSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
+--++..++.|-.. +|.+ ++.-||.-+-..++|. .+-+-+..-++|--|-||.++-..++.++.+-.
T Consensus 106 -----vlmL~tn~~rkdl~S~n~y---e~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP- 176 (877)
T KOG1059|consen 106 -----VLMLTTNLLRKDLNSSNVY---EVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP- 176 (877)
T ss_pred -----HHHHHHHHHHHHhccCccc---hhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-
Confidence 34456666666654 3332 4556666665555543 455556677888899999999999999998755
Q ss_pred hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 223 EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 223 ~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+.+ .-.++-+..=|.|.+|-+-.+|=..++.|-+.-+++
T Consensus 177 eAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 177 EAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 332 334455666789999999999999999987665544
No 172
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.69 E-value=85 Score=33.95 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhc-CcchH---HHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Q 022417 107 LEKVMAVVVKAMK-NPRSA---LCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMV 182 (297)
Q Consensus 107 L~~i~~~v~~~vk-nLRS~---Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv 182 (297)
=++++..|...++ ||+|. |...|+-++|.|| +. .|-+. +-.-+--|| ...+.|||.-|.-|+.-++
T Consensus 101 ~qdvllLltNslknDL~s~nq~vVglAL~alg~i~---s~-Emard---lapeVe~Ll---~~~~~~irKKA~Lca~r~i 170 (866)
T KOG1062|consen 101 RQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC---SP-EMARD---LAPEVERLL---QHRDPYIRKKAALCAVRFI 170 (866)
T ss_pred chHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC---CH-HHhHH---hhHHHHHHH---hCCCHHHHHHHHHHHHHHH
Confidence 3777777777776 68886 5555555555555 33 44332 222222222 3589999999999999998
Q ss_pred HhcCch--hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 183 ESITPL--PLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 183 ~~~s~~--kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
..++.. -.++.....+.+|+.-|-..+..++..+|+.
T Consensus 171 rK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 171 RKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred HcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 888753 3455555677788888877776666666665
No 173
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=52.44 E-value=2.8e+02 Score=28.44 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=95.2
Q ss_pred CcCHHHHHHHHHHHHHHHhhCh-----hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHc-CCCCCCcc--hh
Q 022417 79 SKDWTNVCESLNNARRFALHHS-----SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAF-GDKLLDST--SD 150 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~-----e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l-~~~~md~~--~~ 150 (297)
+.-|..+-++|..+-.+----| +-....+..=+..|-..|+++-..+-......+..|...| +.+.+.-- +-
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 4567777777654444332111 2223456666677777788877777777766666666543 33222211 22
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc--CchhHHHHHH-hh-ccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI--TPLPLLQKLK-TY-VKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~--s~~kll~~L~-~~-~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.++..+..|+...++....|+..|......|.... ...++++.-+ .- -.+|.|-+-..-...|..+.+..|..
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgkG 560 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGKG 560 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCCC
Confidence 47788899999999999999999999998887764 4567777654 32 34788888776677777777776643
No 174
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.30 E-value=29 Score=27.55 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH
Q 022417 64 PDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP 105 (297)
Q Consensus 64 ~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~ 105 (297)
..+...+..+...|.+.+|..++.||..|-.++++..+-+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence 456678888889999999999999999999999988766644
No 175
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=50.02 E-value=41 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.9
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.-.++.|...++|.++.|+..++..|.++.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 346788888888999999999998888775
No 176
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=48.88 E-value=3.7e+02 Score=28.87 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=85.8
Q ss_pred HHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc--h--hhHHHHHHHHHHHhc
Q 022417 89 LNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST--S--DALDNLVLQLLMKAS 164 (297)
Q Consensus 89 L~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~--~--~~ld~ll~~LL~Ka~ 164 (297)
++.+|-++.|-+. ....+.+.+..++..+++-.+. -..+.|+|-|...--. ..+-. . -.+-+.+..+|.-..
T Consensus 471 lKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~e--e~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~ 546 (708)
T PF05804_consen 471 LKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDSE--EFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGA 546 (708)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCC
Confidence 5778888885532 3334555555556666655442 4566677766643211 22211 0 012233333333222
Q ss_pred cccHHHHHHHHHHHHHHHHhcC------chhHHHHHHhhccCCC--HHHHHHHHHHHHHHHHhhCc-hhhhhccHHHHHH
Q 022417 165 QDKKFVCEEADRALNTMVESIT------PLPLLQKLKTYVKHTN--PRIRAKAAISISICVTKMGL-EGMKELGLVSLVQ 235 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s------~~kll~~L~~~~~hKn--~~VR~~aA~~L~~~v~~~g~-~~l~~~~~~~ll~ 235 (297)
.... +.-++-..+.+|+..=. ...+++.|..-.+.|. -.+--++..++..++..-.. +.+... ..+..
T Consensus 547 ~~dD-l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~--~~~~~ 623 (708)
T PF05804_consen 547 SEDD-LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE--TEIPA 623 (708)
T ss_pred CChH-HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc--cchHH
Confidence 2222 33333344555443311 1244556655444333 55555566666666654111 112221 23556
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 236 VAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 236 ~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
-+..++.|.++++|..+-.++..+-+.
T Consensus 624 ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 624 YLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 677888999999999999998877553
No 177
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=48.18 E-value=51 Score=30.99 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=44.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH----HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP----NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFS 138 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~----~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~ 138 (297)
....++..+.++||.-+..++..+-.|+.+.+..... .+..++..+....++-.+.+...|+.+++.|.+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 4667788888999999999999999999887765543 344444444444444555566888888888874
No 178
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.13 E-value=1e+02 Score=32.42 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP 189 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k 189 (297)
|-+.+--.|.+-.--|-|+|..++|.+| +++ +. .+..++..| . -+-|.|||-...-||...|.+....-
T Consensus 553 v~~lLh~avsD~nDDVrRAAViAlGfvc--~~D----~~--~lv~tvelL-s--~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 553 VSTLLHYAVSDGNDDVRRAAVIALGFVC--CDD----RD--LLVGTVELL-S--ESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred HhhhheeecccCchHHHHHHHHheeeeE--ecC----cc--hhhHHHHHh-h--hccchhhhhhhHHHhhhhhcCCccHH
Confidence 3334444578888889999999999776 222 21 244444333 2 25789999999999999888877777
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
++..|-+...+.|--||..+..-+..++.+..
T Consensus 622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 88888888889999999988777776666554
No 179
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.40 E-value=2e+02 Score=28.15 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHH-HHHHHhcCc-------------
Q 022417 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRAL-NTMVESITP------------- 187 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL-~~Mv~~~s~------------- 187 (297)
+.-++|+-.+-.|++.+++ .+.+ -+-..+..+|.+-.+ ++.+-..++.--| .++......
T Consensus 226 TrR~AA~dfl~~L~~~~~~-~v~~---i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEK-QVTS---ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred CcHHHHHHHHHHHHHHHhH-HHHH---HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 3445777777777777666 3222 244555666654322 3344444443222 333333311
Q ss_pred ------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 022417 188 ------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSM 255 (297)
Q Consensus 188 ------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~ 255 (297)
..++|-|. ...++.|.+|+.+..++..--..+..+. +..+++.+..++.+.+.=|+.||=.+
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-----l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-----LLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-----HHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-----HHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 11233333 3347889999999888887777665433 57799999999999999999988544
No 180
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=47.33 E-value=4.8e+02 Score=29.68 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcccc
Q 022417 88 SLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDK 167 (297)
Q Consensus 88 aL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn 167 (297)
|-..|+-|..++++++ ..++..+=+--..|+.---.++.++|..... .+. .++.++.--|-|+++++
T Consensus 490 gr~AL~nLL~~N~dLl--------~~~IdrCYss~~~va~gYF~vlaev~~~~~~---~~~--~~~~LL~L~Lfklg~~~ 556 (1120)
T PF14228_consen 490 GRRALKNLLEHNPDLL--------DWVIDRCYSSSPRVAEGYFTVLAEVFSEREY---PPC--PFWELLNLVLFKLGDES 556 (1120)
T ss_pred HHHHHHHHHHhhHHHH--------HHHHHHhcCCChhHHHHHHHHHHHHHHcCCC---CCC--CHHHhHHHHHHhhcCCc
Confidence 3344556666776633 2233333333355665555566666643332 111 36788888899999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchh---HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 168 KFVCEEADRALNTMVESITPLP---LLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 168 ~FI~e~A~~AL~~Mv~~~s~~k---ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.=||+.|-.=|..+-..-.... -...+.....++.+.+-..+..-|+.-+.++.+
T Consensus 557 ~eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hP 614 (1120)
T PF14228_consen 557 SEIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAKQHP 614 (1120)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHHhCh
Confidence 9999999998887754422111 122233456677888877777777776666554
No 181
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=47.32 E-value=3.8e+02 Score=28.52 Aligned_cols=86 Identities=9% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHH
Q 022417 83 TNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLM 161 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~ 161 (297)
....|+-..+-+++..+ ++ ..+..++..+-..+++.|++.-=.|+.++..|...+.. .....-.+++.++
T Consensus 279 mV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~vcN~evEsLI----- 349 (898)
T COG5240 279 MVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVSVCNKEVESLI----- 349 (898)
T ss_pred hhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eeeecChhHHHHh-----
Confidence 33455555555555433 32 23566777778889999999999999999999988766 3333222355544
Q ss_pred HhccccHHHHHHHHHHHH
Q 022417 162 KASQDKKFVCEEADRALN 179 (297)
Q Consensus 162 Ka~~sn~FI~e~A~~AL~ 179 (297)
.+.|+-|+.-|-.+|.
T Consensus 350 --sd~Nr~IstyAITtLL 365 (898)
T COG5240 350 --SDENRTISTYAITTLL 365 (898)
T ss_pred --hcccccchHHHHHHHH
Confidence 3555555555554443
No 182
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=47.17 E-value=96 Score=27.30 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHh--cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH--------HHHhc
Q 022417 172 EEADRALNTMVES--ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV--------AAGLL 241 (297)
Q Consensus 172 e~A~~AL~~Mv~~--~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~--------~a~~l 241 (297)
+++...+..|... ++|...|..|.+.-. .++.||..+.++ ++....+.+..| +.+|+|+ +++||
T Consensus 53 ~~~~~~l~~Ll~W~pi~p~~ALell~~~y~-~~~~Vr~yAvr~----L~~~~~e~l~~Y-lpQLVQaLryd~~~~l~~FL 126 (175)
T cd00871 53 DENSPDLKYLLYWAPVSPVQALSLFTPQYP-GHPLVLQYAVRV----LESYPVETVFFY-IPQIVQALRYDKMGYVEEYI 126 (175)
T ss_pred hhHHHHHHHHcCCCCCCHHHHHHHhCcccC-CCHHHHHHHHHH----HHhCCHHHHHHH-HHHHHHHHhccccchHHHHH
Confidence 3444556666655 446667777765332 478999877654 455665655444 5555554 45555
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 242 NDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 242 ~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
-+....-...|-.++|.|+.-..+++|
T Consensus 127 l~~A~~s~~faHql~W~lkae~~~de~ 153 (175)
T cd00871 127 LETAKRSQLFAHQIIWNMQTNCYKDEE 153 (175)
T ss_pred HHHHhhhHHHHHHHHHHHHHhccCCcc
Confidence 555556666788889988877665554
No 183
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=3e+02 Score=29.80 Aligned_cols=135 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHH-----HHHHHcCCCCCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAAS-----DIFSAFGDKLLD 146 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~-----dLf~~l~~~~md 146 (297)
++...|+|..+.++.=|.-.+.-|...+++++ ..++..|.+-+.+-.+.-..-|+.|+| |+.+.|..
T Consensus 78 EaV~LLss~kysEKqIGYl~is~L~n~n~dl~----klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~---- 149 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQIGYLFISLLLNENSDLM----KLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFAD---- 149 (938)
T ss_pred HHHHHhhcCCccHHHHhHHHHHHHHhcchHHH----HHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhh----
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh----cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES----ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~----~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
++..++ .++++-.+|+..|.-||..+..+ +++..-..-+..-+.+..-.|-..+.-++..+++++..
T Consensus 150 ----DI~KlL-----vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 150 ----DIPKLL-----VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred ----hhHHHH-----hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Q ss_pred h
Q 022417 223 E 223 (297)
Q Consensus 223 ~ 223 (297)
+
T Consensus 221 ~ 221 (938)
T KOG1077|consen 221 S 221 (938)
T ss_pred H
No 184
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.15 E-value=4.1e+02 Score=28.58 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh-------hhHHHHHHHHHh
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE-------HKQEAWQSFCQS 280 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~-------~~~~~~~~~~~~ 280 (297)
...+.+.+.+.+.|...++|.+|=++++.+-+.++-..| ..-+.|.++|.-
T Consensus 232 ~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~ 289 (823)
T KOG2259|consen 232 SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRA 289 (823)
T ss_pred cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHH
Confidence 366788899999999999999999999999988843221 245888888864
No 185
>PF05536 Neurochondrin: Neurochondrin
Probab=46.02 E-value=3.6e+02 Score=27.86 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=105.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHH-----HHHHHHhcC-------cchHHHHHHHHHHHH
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVM-----AVVVKAMKN-------PRSALCKTSIMAASD 135 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~-----~~v~~~vkn-------LRS~Vsk~A~~tl~d 135 (297)
..+.+++..|++.|=+.++-||..+.++....+. .....+.|. ..+...++. .+.....-|+.-++-
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~-~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDE-DSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchh-hHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5688999999999889999999999999985442 111111111 233344443 333344444444444
Q ss_pred HHHHcCCCCCCcchhhHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHhcCchh------HHHHHHhhccCCCHHHHHH
Q 022417 136 IFSAFGDKLLDSTSDALDNLVLQLLMKASQDKK-FVCEEADRALNTMVESITPLP------LLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 136 Lf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~-FI~e~A~~AL~~Mv~~~s~~k------ll~~L~~~~~hKn~~VR~~ 208 (297)
++. ...+-.+ ..+...++.|+.=...... =+.+++-.+|..++.+=.+.+ .++.|.....+ ++.....
T Consensus 84 f~~---~~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 84 FCR---DPELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HcC---ChhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 332 2122222 2466777777665544333 677788888888874433333 34556554444 6777888
Q ss_pred HHHHHHHHHHhhCchhhhh--ccHHHHHHHHHHhccCCCHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKE--LGLVSLVQVAAGLLNDRLPEAREAA 252 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~--~~~~~ll~~~a~~l~D~~pE~R~~a 252 (297)
+...+.+++...+...+.+ .++..++..+++......-+.+...
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfel 204 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFEL 204 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 8888888888877544432 2356677777766554444433333
No 186
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.78 E-value=4.7e+02 Score=29.16 Aligned_cols=187 Identities=14% Similarity=0.105 Sum_probs=109.5
Q ss_pred CCCCCCCCCCCCCCCcccceeccCCCCCCCCCc-----cccHHHHHhccCCcCHHHHHHHHHHHHHHH---hhChhhhhH
Q 022417 34 LSVNDENKASFPPSADAFIDYIPSENLKAIPDP-----ESMIPCLIEGLDSKDWTNVCESLNNARRFA---LHHSSLLEP 105 (297)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~v~y~~~~eL~Pl~~p-----e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa---~~h~e~l~~ 105 (297)
.+-|+|..-++++..|-.-+|.+ -+|...+ +..+..+..-|.+++=.-|+++|.-++--. ..|++.|.|
T Consensus 767 ~~dnee~~e~~~e~edens~~~d---~ep~~~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP 843 (1014)
T KOG4524|consen 767 PDDNEEPEEREEEVEDENSEYTD---TEPILPDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP 843 (1014)
T ss_pred CCcccCcCCCCCCccccccCCCC---CCCCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH
Confidence 34466666667777766666655 3333222 233445556789999999999999887533 567888889
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 106 NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 106 ~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
..|..=+.|+..++.=---+.--|+.|+--|...-|+ -+..- .+.+.++.| .
T Consensus 844 lvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD-Fv~sR--~l~dvlP~l-------------------~------ 895 (1014)
T KOG4524|consen 844 LVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD-FVASR--FLEDVLPWL-------------------K------ 895 (1014)
T ss_pred HHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh-HHHHH--HHHHHHHHH-------------------H------
Confidence 9999999998888766566666677777777766555 22211 122222221 0
Q ss_pred CchhHHHHHH-hhccCCCHHHHHHHHHHHH--HHHHhhCchh----hhhccHHHHHHHHHHhccCCCHHH-HHHHHHHHH
Q 022417 186 TPLPLLQKLK-TYVKHTNPRIRAKAAISIS--ICVTKMGLEG----MKELGLVSLVQVAAGLLNDRLPEA-REAARSMVN 257 (297)
Q Consensus 186 s~~kll~~L~-~~~~hKn~~VR~~aA~~L~--~~v~~~g~~~----l~~~~~~~ll~~~a~~l~D~~pE~-R~~aRk~l~ 257 (297)
+.+. ..++.++...|..++.+=. .+++..+.=- +....+..+.....-.+.+..|+. -+.+|.+|.
T Consensus 896 ------~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~F~ 969 (1014)
T KOG4524|consen 896 ------HLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSCFL 969 (1014)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHHHH
Confidence 0111 1244577777777776433 3444433210 111235666777766677766664 445555544
No 187
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=45.63 E-value=73 Score=25.15 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=35.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~ 242 (297)
++..+..+.+|=++.||.-+..+|.-+++..+.. +...+..++++.-..++.
T Consensus 12 l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~-~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 12 LMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE-LCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH-hHhhhHHHHHHHHHHHHC
Confidence 4566677899999999999999999999988754 223333444444444443
No 188
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=45.44 E-value=54 Score=26.54 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.8
Q ss_pred cccHHHHHhcc---CCcCHHHHHHHHHHHHHHHhhChhhhhHHHH
Q 022417 67 ESMIPCLIEGL---DSKDWTNVCESLNNARRFALHHSSLLEPNLE 108 (297)
Q Consensus 67 e~~l~~~l~~L---~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~ 108 (297)
...+..++..| +.++|....+||..|.-|..+.++-+...+.
T Consensus 38 ~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~ 82 (125)
T PF01417_consen 38 QEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELR 82 (125)
T ss_dssp HHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34455666777 7789999999999999999999987765553
No 189
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=44.86 E-value=1.5e+02 Score=23.05 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTK-MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~-~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
.++..+...+-+++..-|..++.++..++.. .-...-...|...+++.+..+..| .|..-.+--+++
T Consensus 36 ~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D-~P~~~~~la~~~ 103 (113)
T PF02847_consen 36 EVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELD-IPKAPEYLAKFL 103 (113)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhcccc-chHHHHHHHHHH
Confidence 4555566666677899999999999998864 222222334677777777777777 444444444443
No 190
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.80 E-value=4.9e+02 Score=29.07 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=81.6
Q ss_pred cCCCCCCCCCccccHHHHHhccC-CcCHHHHHHHHHHHHHHHhhCh---hhhhHHHHHHHHHHHHHhcCcchHHHHHHHH
Q 022417 56 PSENLKAIPDPESMIPCLIEGLD-SKDWTNVCESLNNARRFALHHS---SLLEPNLEKVMAVVVKAMKNPRSALCKTSIM 131 (297)
Q Consensus 56 ~~~eL~Pl~~pe~~l~~~l~~L~-s~dW~~~~eaL~~LRrLa~~h~---e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~ 131 (297)
.+.|+..-.+=..++......|. +++=-.+++|-.-|+.+..+.+ +-+.++++.++..+.+.++..-.-.--+
T Consensus 490 ~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~--- 566 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN--- 566 (1010)
T ss_pred HhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---
Confidence 34444433333455666667775 8889999999999999997655 5588999999999999888887777666
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHHhcC
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ----------DKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~----------sn~FI~e~A~~AL~~Mv~~~s 186 (297)
++.++-..|+. .+.|.+-++-.-+..-+.|..+ ++...+---=+|+.+|+.++.
T Consensus 567 vme~iV~~fse-ElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e 630 (1010)
T KOG1991|consen 567 VMEKIVCKFSE-ELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLE 630 (1010)
T ss_pred HHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666 7777643333333333333333 344444444455556666554
No 191
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=44.35 E-value=1.6e+02 Score=23.42 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred hhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 188 LPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 188 ~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
.+++|.+..+++ .+++..|..+-..+..+..+..- ...-++.+++.+.+.....+. .|.++..|-..+..+
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~l~~~i~~~~~~~~~-----~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNALMESILKNWTQETV-----QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhccccchh-----HHHHHHHHHHHHHcc
Confidence 356899998888 88999998887777777776442 222356777777766665554 344555554444444
Q ss_pred hh---hhHHHHHHHHH
Q 022417 267 EE---HKQEAWQSFCQ 279 (297)
Q Consensus 267 ~~---~~~~~~~~~~~ 279 (297)
++ -+...+..|+.
T Consensus 77 ~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 77 ENVDSLPRKVFKALLK 92 (121)
T ss_pred cccccCCHHHHHHHHc
Confidence 21 13355555543
No 192
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.17 E-value=1.6e+02 Score=24.31 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|+.++=..++++|..|..|+.+.++.|...+.+= |.+.|+ +..|+. ..|+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~------------~~~Ik~--------~~~f~g-~~Dp 96 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN------------SAQIRE--------CANYKG-PPDP 96 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh------------HHHHHH--------HHHcCC-CCCc
Confidence 4466677888888877779999999999998887665544331 233333 344555 4565
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVE 183 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~ 183 (297)
. +--+-++-||++|..++..+..
T Consensus 97 ~-------------~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 97 L-------------KGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred c-------------cCcchhHHHHHHHHHHHHHHhc
Confidence 2 1122456789999999888743
No 193
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=43.98 E-value=4e+02 Score=27.81 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=92.4
Q ss_pred ccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 66 PESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 66 pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
.+.+-..++...+.. =..+.=|-..|-|..++.|++-.. .+.++...+.+=-+.|=+.|+..+-.+|..-+. .+
T Consensus 21 ~~~~y~~il~~~kg~-~k~K~Laaq~I~kffk~FP~l~~~----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~-~v 94 (556)
T PF05918_consen 21 HEEDYKEILDGVKGS-PKEKRLAAQFIPKFFKHFPDLQEE----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE-HV 94 (556)
T ss_dssp GHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHH----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--H
T ss_pred CHHHHHHHHHHccCC-HHHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH-HH
Confidence 344566777777654 344555556788888888886644 455667777788888989998888888865222 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYV---KHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~---~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
. -+-++|.+||. .+..--.+.+..+|..+... .|.-.|..|.... ..-...||.++-.+|..=+..++.
T Consensus 95 ~----kvaDvL~QlL~---tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 95 S----KVADVLVQLLQ---TDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp H----HHHHHHHHHTT------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred h----HHHHHHHHHHh---cccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 1 24455555554 44455566677777666543 3333444443322 244567899988888776666665
Q ss_pred hhhhh-cc-HHHHHHHHHHhccC
Q 022417 223 EGMKE-LG-LVSLVQVAAGLLND 243 (297)
Q Consensus 223 ~~l~~-~~-~~~ll~~~a~~l~D 243 (297)
+-+.. .. -+.++..+.+.|.|
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT
T ss_pred HHhhchHHHHHHHHHHHHHHHHh
Confidence 44431 11 24555666666666
No 194
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=43.49 E-value=26 Score=28.36 Aligned_cols=36 Identities=25% Similarity=0.541 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHh
Q 022417 245 LPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 245 ~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~ 280 (297)
|..+|.-|-.+|..+...|....|.....|..||..
T Consensus 61 n~~Ir~KA~~lYnkfK~~f~~~~e~~~~~~~~~~~~ 96 (106)
T PF11467_consen 61 NQQIRKKATELYNKFKSLFLPEPESEQNFWEEFCEE 96 (106)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--S-SH----------
T ss_pred cHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 489999999999999999974445567789999875
No 195
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=43.21 E-value=3.7e+02 Score=28.90 Aligned_cols=137 Identities=13% Similarity=0.090 Sum_probs=71.4
Q ss_pred cCHHHHHHHHHHHHHHHhhCh--hhhhHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHS--SLLEPNLEKVMAVVVKAMKN--PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNL 155 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~--e~l~~~L~~i~~~v~~~vkn--LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~l 155 (297)
++++-.+|.|-+|..|....- ..+... ..+++.+...+.. -...+.=++++.+|.++.--....+=. ...+...
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~-~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~-~sgli~~ 580 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQE-YNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLA-KSGLIPT 580 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHh-CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHH-hCChHHH
Confidence 467777777777777764321 111110 2344444444431 123466667777776653211100000 0113445
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhc-------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESI-------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~-------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
+..||..-.++..||.+-.- ++..|+.|- ....+...|.....+||+.||+.+-.+|+.+.+.
T Consensus 581 Li~LL~~kqeDdE~VlQil~-~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILY-VFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHhhCchHHHHHHHHH-HHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 55555544455556555432 222222221 1133556667788999999999998888887763
No 196
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=43.07 E-value=3.6e+02 Score=27.04 Aligned_cols=120 Identities=7% Similarity=0.061 Sum_probs=69.8
Q ss_pred hChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh---cc--ccHHHHH
Q 022417 98 HHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA---SQ--DKKFVCE 172 (297)
Q Consensus 98 ~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka---~~--sn~FI~e 172 (297)
++++.+.+.++.++..+...+....|+=.---+.|+.-++..++. .+-+. .+.++..|.... +. +|.-...
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e-~~~p~---~~~il~~L~~il~~v~kNPsnP~FnH 90 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQE-DILPI---AVEILQHLTAILKEVSKNPSNPRFNH 90 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTT-TTGGG---HHHHHHHHHHHHHHHHTS---HHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHH-HHHHH---HHHHHHHHHHHHHHHHhCCCCcchhh
Confidence 566777888999999999999888885444567888888888888 55554 445554444333 22 4544445
Q ss_pred HHHHHHHHHHHhcCc----------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 173 EADRALNTMVESITP----------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 173 ~A~~AL~~Mv~~~s~----------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
-.=.++..++.++.. ..++|.+..-++.--...--++-+.|..+++...
T Consensus 91 ylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 91 YLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555556666666441 2345544433333333334455667777777644
No 197
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=41.97 E-value=1.5e+02 Score=25.04 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHh-------cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 169 FVCEEADRALNTMVES-------ITPLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~-------~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
-+..+.-+||.+++++ +.....+..|..++.+.++.+|..+..+|..+|
T Consensus 131 ~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 131 DIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4555566666665543 234567888888899999999999999888765
No 198
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.17 E-value=3.5e+02 Score=26.41 Aligned_cols=88 Identities=22% Similarity=0.220 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhCchhhhh----ccHHH
Q 022417 165 QDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYV-KHTNPRIRAKAAISISICVTKMGLEGMKE----LGLVS 232 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~-~hKn~~VR~~aA~~L~~~v~~~g~~~l~~----~~~~~ 232 (297)
++..=||+.|.+.+.+.++|-+... .++.|...+ ++.+-.+|.++-.-++.+|...-+ ++.. .|
T Consensus 135 ~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~-g~~~fl~~~G--- 210 (342)
T KOG2160|consen 135 NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKP-GQDEFLKLNG--- 210 (342)
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcH-HHHHHHhcCC---
Confidence 4667799999999999999977542 456665543 567778889988888888876543 3222 24
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
..++...++.++-++|...|.++.
T Consensus 211 -~~~L~~vl~~~~~~~~lkrK~~~L 234 (342)
T KOG2160|consen 211 -YQVLRDVLQSNNTSVKLKRKALFL 234 (342)
T ss_pred -HHHHHHHHHcCCcchHHHHHHHHH
Confidence 445555666777888877765544
No 199
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.80 E-value=5.1e+02 Score=28.19 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=98.0
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHH-hh----Chhhh----hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFA-LH----HSSLL----EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa-~~----h~e~l----~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
-++..|+-.+.+.+..|+-.+--+- .. |.+.. ..++..+...+-..+-+.||.-.+--|...+..+..
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~--- 254 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM--- 254 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH---
Confidence 5566777777777777664433222 11 22222 344555555565666667775444444444444433
Q ss_pred CCCCcchhhHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHhcCch----hHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQ-----DKKFVCEEADRALNTMVESITPL----PLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~-----sn~FI~e~A~~AL~~Mv~~~s~~----kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
+.+ .++..||.|.-+ +-.=||-..-..|..|..+=... .++|.|-..+.+++..||-.....|
T Consensus 255 --iP~------~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 255 --IPP------TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred --cCH------HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHH
Confidence 332 366777777654 33456777777888888874433 4555555567789999997665544
Q ss_pred HHHHHhhCchhhhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 214 SICVTKMGLEGMKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 214 ~~~v~~~g~~~l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
..+ ..-+..+ +.+-.+-.+++++-.|+.|-.|..++-++.
T Consensus 327 l~i----k~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 327 LKI----KAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFN 367 (1005)
T ss_pred HHH----HhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHH
Confidence 433 2222233 234444556677778877777666654443
No 200
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.77 E-value=3.2e+02 Score=27.25 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=78.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccH
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGL 230 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~ 230 (297)
-||.+.+--|.=+|.+|-..|...+.+ .|.. +++.+.....+.+..||...-+++...+..++.+. .+-..
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp~~ 139 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSPMV 139 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcchH
Confidence 344445566677999999999888877 3332 44445567788999999999999999888888665 33334
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 231 VSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 231 ~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.-++.-+.-.+.-..|++|.-+-+.+..|-..|+.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 55555556666778999999999999998888854
No 201
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.77 E-value=4e+02 Score=28.86 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=56.8
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
.+.+|++|..+|...||-.++++|..+....+. +-+.-.+.+...+..=+-|+-|-||-.|=.++..|++.
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 467788899999999999999988888774331 12222578888888889999999999999999988863
No 202
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.50 E-value=3.7e+02 Score=27.48 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCcch----HHHHHHHHHHHHHHHHcCCCC---------CCcchhhHHHHHHHHHHHhccccHHHHHHH
Q 022417 108 EKVMAVVVKAMKNPRS----ALCKTSIMAASDIFSAFGDKL---------LDSTSDALDNLVLQLLMKASQDKKFVCEEA 174 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS----~Vsk~A~~tl~dLf~~l~~~~---------md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A 174 (297)
.+++..+...+++..+ .+-.+|+.+++.|...+.... .....+.+..-+...|..+.+...+ ++-
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~ 507 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE--EEK 507 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H--HHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH--HHH
Confidence 3344555555555432 366789999999987655521 1111112222222333322222111 222
Q ss_pred HHHHHHHHHhcCchhHHHHHHhhccCC---CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc--CCCHHHH
Q 022417 175 DRALNTMVESITPLPLLQKLKTYVKHT---NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN--DRLPEAR 249 (297)
Q Consensus 175 ~~AL~~Mv~~~s~~kll~~L~~~~~hK---n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~--D~~pE~R 249 (297)
-.+|.++ .|+.....++.|.+++..+ +..+|..+...|-.+. ....+.+.+.+..... .-++|+|
T Consensus 508 ~~~LkaL-gN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~---------~~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 508 IVYLKAL-GNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA---------KHCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHH-HHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG---------GT-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHHHh-hccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHh---------hcCcHHHHHHHHHHhcCCCCChhHH
Confidence 2333333 3445567888888766555 6677765554333221 1112233333333332 2368999
Q ss_pred HHHHHHHH
Q 022417 250 EAARSMVN 257 (297)
Q Consensus 250 ~~aRk~l~ 257 (297)
-+|-.++.
T Consensus 578 iaA~~~lm 585 (618)
T PF01347_consen 578 IAAYLILM 585 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99865443
No 203
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.02 E-value=2.2e+02 Score=31.35 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=61.3
Q ss_pred ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHH
Q 022417 99 HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRAL 178 (297)
Q Consensus 99 h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL 178 (297)
||-.+.+.|+ .+...++ -|..+-.|+.++..||+..+- .++|..+.+-..+-.++.| +.-+.|.|...-+++
T Consensus 543 ~P~~ln~sl~----~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~-~L~py~d~~~a~~~e~l~~-~~~~~S~~~klm~sI 614 (982)
T KOG2022|consen 543 HPMYLNPSLP----LLFQGLH--NSKESEQAISTLKTLCETCPE-SLDPYADQFSAVCYEVLNK-SNAKDSDRLKLMKSI 614 (982)
T ss_pred CCcccCchHH----HHHHHhc--CchHHHHHHHHHHHHHHhhhh-hCchHHHHHHHHHHHHhcc-cccCchHHHHHHHHH
Confidence 4444444343 4444444 688889999999999999988 8999866666666677776 667889999999999
Q ss_pred HHHHHhcC
Q 022417 179 NTMVESIT 186 (297)
Q Consensus 179 ~~Mv~~~s 186 (297)
+.+++..-
T Consensus 615 Gyvls~~~ 622 (982)
T KOG2022|consen 615 GYVLSRLK 622 (982)
T ss_pred HHHHHhcc
Confidence 99998877
No 204
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=39.34 E-value=1.5e+02 Score=26.20 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHh--cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH----------HHHh
Q 022417 173 EADRALNTMVES--ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV----------AAGL 240 (297)
Q Consensus 173 ~A~~AL~~Mv~~--~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~----------~a~~ 240 (297)
+...++..|-.. +++..+|..|.+... ++.||..+.++| +.++++.+..+ +..++|+ ++.|
T Consensus 60 e~~e~~~ll~~W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~y-LpQLVQaLr~E~~~~~~L~~f 132 (184)
T smart00145 60 EVAQALSLLKKWAPLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLY-LLQLVQALKYEPYLDSALARF 132 (184)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHH-HHHHHHHHHcccccccHHHHH
Confidence 344555555555 446677777765444 789998877654 55665555444 4444444 3344
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 241 LNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 241 l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
|-+..-.-...|-..+|.|+....
T Consensus 133 Ll~ra~~s~~~~~~l~W~L~~e~~ 156 (184)
T smart00145 133 LLERALKNQRLGHFFYWYLKSELE 156 (184)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHcc
Confidence 444444445678888888876653
No 205
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=39.33 E-value=1.8e+02 Score=29.14 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=57.7
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhcc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+..+|..|-.-+.|++|.|--.+-.++..|+..-|..--++---..+...+.+++. -+.|.+++.-|.++...-+.|-+
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 34688888889999999999999999999999888433222112334444444555 67899999999998888777765
Q ss_pred c
Q 022417 266 N 266 (297)
Q Consensus 266 ~ 266 (297)
+
T Consensus 123 D 123 (462)
T KOG2199|consen 123 D 123 (462)
T ss_pred C
Confidence 4
No 206
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=39.30 E-value=2.8e+02 Score=24.74 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcc
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPR 122 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLR 122 (297)
.--......+..|..+|+..+.+.+|-++..+...+..++
T Consensus 53 ~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 53 SIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHH
Confidence 3334455667778889999998777766665544444333
No 207
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.23 E-value=1.9e+02 Score=31.76 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc
Q 022417 88 SLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ 165 (297)
Q Consensus 88 aL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~ 165 (297)
+|..|..|.+.||..+. +.|-.++..+ +=.-..+-|.|+.+.+.+|..+..+.++...|. -+++.+||.- +
T Consensus 275 ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl----DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ea-lPlL~~lLs~--~ 347 (1051)
T KOG0168|consen 275 SLQALEKISRRHPKAILQAGALSAVLSYL----DFFSIHAQRVALAIAANCCKSIRSDEFHFVMEA-LPLLTPLLSY--Q 347 (1051)
T ss_pred HHHHHHHHHhhccHHHHhcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCccchHHHHH-HHHHHHHHhh--c
Confidence 46666777777887653 4444444333 223346789999999999999998777654322 2344444431 2
Q ss_pred ccHHHHHHHHHHHHHHHHhcC-chhHHHHHH
Q 022417 166 DKKFVCEEADRALNTMVESIT-PLPLLQKLK 195 (297)
Q Consensus 166 sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~ 195 (297)
+++ .-|.+--++-.+++... ....+.-|.
T Consensus 348 D~k-~ies~~ic~~ri~d~f~h~~~kLdql~ 377 (1051)
T KOG0168|consen 348 DKK-PIESVCICLTRIADGFQHGPDKLDQLC 377 (1051)
T ss_pred cch-hHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 444 34555566666665544 344455554
No 208
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=38.58 E-value=2.8e+02 Score=24.57 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH
Q 022417 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL 191 (297)
Q Consensus 112 ~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll 191 (297)
..+.+..++-.-=+-|.||.+. -.+.+ ..| ++.++.....-.+++-.||..+..-+|..+.+. ++..++
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~----l~~~~-~~~-----~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~-d~~~V~ 186 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQ----LKYKE-KTD-----TDLLFEIILANLGSKEFFIRKAIGWALREYSKT-NPDWVR 186 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHH----HHHHH-ccC-----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc-CHHHHH
Confidence 4555666776667778887641 12344 344 333443333345677899999999999999776 888888
Q ss_pred HHHHhhccCCCHHHHHHHHHH
Q 022417 192 QKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 192 ~~L~~~~~hKn~~VR~~aA~~ 212 (297)
..|..+...=++..++.+.++
T Consensus 187 ~fl~~~~~~m~~~s~rea~k~ 207 (208)
T cd07064 187 DFVAAHKLRLSPLSRREALKY 207 (208)
T ss_pred HHHHHhhhhcChhHHHHHHhh
Confidence 888766555556666665544
No 209
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.06 E-value=2.7e+02 Score=24.22 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.+..++..+++-+.+.-.=||..|..+|..+..+-.+ ...+..+...-... +..-.....++..+++.++.+
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~-~~~w~~~~~~F~~l~~LL~~~ 82 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA-SLNWSSSSEYFPRLVKLLDLP 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc-ccccCCHHHHHHHHHHHhccH
Confidence 4677888888888887788999999999999844323 12333332111100 000122334455555555443
Q ss_pred hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 224 GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
.. ...++..+.-.+.+++..+...++.++....+.
T Consensus 83 ~y----~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 83 EY----RYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred HH----HHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 22 345555566666666666666666666555443
No 210
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.87 E-value=4.5e+02 Score=29.60 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=34.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhC-chhhhhcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 197 YVKHTNPRIRAKAAISISICVTKMG-LEGMKELG---LVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 197 ~~~hKn~~VR~~aA~~L~~~v~~~g-~~~l~~~~---~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+++||..||.++...|-.+.++-. ..++..|- -+++++++ .-|.++.||..+-+.+..+
T Consensus 334 tLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa---drd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 334 TLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA---DRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred eeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH---hhhcchhHHHHHHHHHHHH
Confidence 4568888888888888888777611 11121120 24555544 3566666666666555443
No 211
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.80 E-value=3.7e+02 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.0
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
-+..++..+..|.++|.+.+|+.-..++..++.
T Consensus 58 ~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 58 LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 367899999999999999999988888888876
No 212
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=36.68 E-value=6.7e+02 Score=28.36 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=92.8
Q ss_pred HHHHHHHhhChhhhhHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccH
Q 022417 90 NNARRFALHHSSLLEPNLEK-VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKK 168 (297)
Q Consensus 90 ~~LRrLa~~h~e~l~~~L~~-i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~ 168 (297)
..++.+...++.++...+-+ .-..+.+.+...+ ++--+|..++++++..+-+ .=+.+ ..+++.+.|...-+.+
T Consensus 657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~-~d~~~---~~~li~~~ls~~~~~~- 730 (1133)
T KOG1943|consen 657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK-ADEGE---EAPLITRYLSRLTKCS- 730 (1133)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh-cCchh---hhHHHHHHHHHhcCch-
Confidence 33444444444433322211 2233444445666 8888899999999998776 22222 2357777777665531
Q ss_pred HHHHHHHHHHHHHHHhcCc--------h-hHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCch---h-hhhccHHHHH
Q 022417 169 FVCEEADRALNTMVESITP--------L-PLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLE---G-MKELGLVSLV 234 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~~s~--------~-kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~---~-l~~~~~~~ll 234 (297)
++..+-...|.....| . ++...+.. .-....+.-|.....-+..+++-.+.. . +.++ ++.++
T Consensus 731 ---~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~-~e~LL 806 (1133)
T KOG1943|consen 731 ---EERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKF-RETLL 806 (1133)
T ss_pred ---HHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHH-HHHHH
Confidence 2233333333333333 2 22233333 233447777888888888888877621 1 1122 67888
Q ss_pred HHHHHhccCCCHHH----HHHHHHHHHHHHHHhcc
Q 022417 235 QVAAGLLNDRLPEA----REAARSMVNSMYNAFTE 265 (297)
Q Consensus 235 ~~~a~~l~D~~pE~----R~~aRk~l~~L~~~~~~ 265 (297)
+++-.+..|...++ |++|-+++..+-.....
T Consensus 807 ~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 807 NALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred HHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 88888888877764 66666666665554443
No 213
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=35.92 E-value=86 Score=19.94 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHH
Q 022417 109 KVMAVVVKAMKNPRSALCKTSIMAASDIF 137 (297)
Q Consensus 109 ~i~~~v~~~vknLRS~Vsk~A~~tl~dLf 137 (297)
..++.+++.+++.-..|.++|+-+++.|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36778888899999999999999999885
No 214
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.87 E-value=6.3e+02 Score=27.79 Aligned_cols=185 Identities=13% Similarity=0.105 Sum_probs=99.3
Q ss_pred ccccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC-C
Q 022417 66 PESMIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG-D 142 (297)
Q Consensus 66 pe~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~-~ 142 (297)
..+.+..+.+.+ .+.--+.|.+|+.-|..+++..-+.++ .-|+.++..+-.- ---+...+.++-|+.-++.+=. .
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D--~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD--YMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCcch
Confidence 344567777777 455678888888888888875554433 2233333322111 1223444555555555543310 0
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
..|| +.+-.-+-+.+--+.| +-....+..|..+..+++=.||.++-+++..++..-|.
T Consensus 98 ~v~d-------------------ds~qsdd~g~~iae~f---ik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 98 EVMD-------------------DSTQSDDLGLWIAEQF---IKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT 155 (970)
T ss_pred hhcc-------------------cchhhhHHHHHHHHHH---HcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH
Confidence 0111 1111111112222233 23445678888999999999999999999999998775
Q ss_pred hh---hhh--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHh
Q 022417 223 EG---MKE--LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 223 ~~---l~~--~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~ 280 (297)
+- +.. .|+.++ ..++.|.---+|+.|=-++..|-+.-+ .=|+.-+|++....
T Consensus 156 e~q~~ll~~P~gIS~l----mdlL~DsrE~IRNe~iLlL~eL~k~n~--~IQKlVAFENaFer 212 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKL----MDLLRDSREPIRNEAILLLSELVKDNS--SIQKLVAFENAFER 212 (970)
T ss_pred HHHHHHHHCchhHHHH----HHHHhhhhhhhchhHHHHHHHHHccCc--hHHHHHHHHHHHHH
Confidence 42 222 234444 445557666677776655554433111 11344555554443
No 215
>KOG2434 consensus RNA polymerase I transcription factor [Transcription]
Probab=35.72 E-value=5.1e+02 Score=26.68 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=89.7
Q ss_pred cCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHH
Q 022417 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLV 156 (297)
Q Consensus 77 L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll 156 (297)
+...+| .++..+++++++-...++.+...=+.....+.. +.+.|..|.-+.+.-+..+....|. . +++++
T Consensus 44 ~~~~~~-~~~~~~~~l~~~l~~~~~~ida~~~~~l~~i~~-~~~~~~sv~~~~~~~l~~l~~~~~~-~-------l~~c~ 113 (500)
T KOG2434|consen 44 LKKNAL-DQVAQLETLLKLLSQFVACIDALHHNTLLLILS-LRSHRGSVIEALLNLLISLAVTSGK-F-------LSPCL 113 (500)
T ss_pred hhhccC-cHHHHHHHHHHHHHhhHHhhcccchhHHHHHHH-hhcCCchHHHHHHHHHHHHHHhCCc-h-------HHHHH
Confidence 445566 888889999999887777765322222222222 6699999999999999999988887 4 45555
Q ss_pred HHHHHHhcc-cc---HHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 157 LQLLMKASQ-DK---KFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 157 ~~LL~Ka~~-sn---~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
..|...-.. +. .-.-+-+..||..+...++ |..+++.|....-+++..- ++...+..++++.-+.
T Consensus 114 ~~lv~~~~~~~v~~~~~~fe~~H~al~~v~r~vP~~~~~l~~~L~~~~p~~~k~~-~~~~~YvsNll~l~~y 184 (500)
T KOG2434|consen 114 SMLVSNLSQPSVTEQIEHFERAHAALKYILRLVPLAPSFLLPILAQVMPKKDKKD-RTLVTYVSNLLKLENY 184 (500)
T ss_pred HHHHHhCCcchhhhhHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHccccccch-hhHHHHHhHHHHHHhh
Confidence 555544422 11 2233557788888888876 6689999987665555444 4455667777765443
No 216
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=34.03 E-value=2.9e+02 Score=23.43 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh--hhhccHHHHHHHHHHhccC-C
Q 022417 168 KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKELGLVSLVQVAAGLLND-R 244 (297)
Q Consensus 168 ~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~--l~~~~~~~ll~~~a~~l~D-~ 244 (297)
-..-..+..+|..|+...+.+.+-..|..+...-...|. -|..|++.+|.+- ....+++.++.-+..++.+ +
T Consensus 12 y~aE~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~-----rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~~ 86 (147)
T cd07909 12 YSAEKQLVKALPKMAKAATSEELKEAFESHLEETEGQVE-----RLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEETG 86 (147)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhccC
Confidence 344556778888888888888888888766543333332 3888999888542 2223456666666665544 4
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q 022417 245 LPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 245 ~pE~R~~aRk~l~~L~~~~ 263 (297)
++++|..+=-+-..-..+|
T Consensus 87 ~~~v~Da~li~aaq~vEHy 105 (147)
T cd07909 87 DSAVLDAALIAAAQKVEHY 105 (147)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 8999998844433334444
No 217
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=33.44 E-value=5.8e+02 Score=26.66 Aligned_cols=85 Identities=11% Similarity=0.021 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhccch-h----hhHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDR-LPEAREAARSMVNSMYNAFTENE-E----HKQEA 273 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~-~pE~R~~aRk~l~~L~~~~~~~~-~----~~~~~ 273 (297)
+..=.+|--+|.++..+|++++..- ..--.++.+++.+.+.|. .+.+=.|| ++..|+. |++.. + .+...
T Consensus 309 dnhwaLRDfAA~ll~~i~k~f~~~y--~~L~~Rit~tl~k~l~D~~~~~st~YG--ai~gL~~-lg~~~I~~~ilp~L~~ 383 (576)
T KOG2549|consen 309 DNHWALRDFAARLLAQICKNFSTLY--NNLQPRITRTLSKALLDNKKPLSTHYG--AIAGLSE-LGHEVIRTVILPNLKE 383 (576)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHhcCCCCCchhhhh--HHHHHHH-hhhhhhhheeccchHH
Confidence 3444688999999999999888422 112467888888777775 44444443 2333333 22221 1 35677
Q ss_pred HHHHHHhcCChhhHHH
Q 022417 274 WQSFCQSNLQPIDAQS 289 (297)
Q Consensus 274 ~~~~~~~~l~~~~a~~ 289 (297)
|...|++.|.......
T Consensus 384 ~~~~l~~~l~~~~~~n 399 (576)
T KOG2549|consen 384 YNERLQSVLDVESLSN 399 (576)
T ss_pred HHHHhhhhcccchhhh
Confidence 8888888776655444
No 218
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=33.22 E-value=4e+02 Score=24.77 Aligned_cols=160 Identities=17% Similarity=0.162 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC-CCCCcc----hhhHHHHHHHHHHHhcccc----HHHHHHHHHH
Q 022417 107 LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD-KLLDST----SDALDNLVLQLLMKASQDK----KFVCEEADRA 177 (297)
Q Consensus 107 L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~-~~md~~----~~~ld~ll~~LL~Ka~~sn----~FI~e~A~~A 177 (297)
++.+...| +|.+||+.+-+....+-+.+..+.+ ..+++. .-.+-..++-+|+..-+.+ ...+.+...+
T Consensus 62 f~Glq~Ll---~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~ 138 (262)
T PF14225_consen 62 FEGLQPLL---LKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEA 138 (262)
T ss_pred chhHHHHH---hCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 34444444 6778888888766665555544433 223322 1123344445555444444 1345566678
Q ss_pred HHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 178 LNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 178 L~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
|..+++.-....+-..+..|++++-.. ...|+..++.-+...-.-.+ --.++..+..++..+.+..|...-+++.
T Consensus 139 La~~a~~~~~~~La~il~~ya~~~fr~----~~dfl~~v~~~l~~~f~P~~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 139 LAQVAEAQGLPNLARILSSYAKGRFRD----KDDFLSQVVSYLREAFFPDH-EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HHHHHHhCCCccHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888887755555555555555544311 12333333332221100011 2455666888888899999999998888
Q ss_pred HHHHHhccchhhhHHHH
Q 022417 258 SMYNAFTENEEHKQEAW 274 (297)
Q Consensus 258 ~L~~~~~~~~~~~~~~~ 274 (297)
.+.....-+..++.|=.
T Consensus 214 ~ll~~~d~~~~~~~dli 230 (262)
T PF14225_consen 214 VLLPHVDMRSPHGADLI 230 (262)
T ss_pred HHhccccCCCCcchHHH
Confidence 88777665544555533
No 219
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=32.81 E-value=5.4e+02 Score=26.12 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHhhccCC-CHHHHHHHHHHHHHHHHhhCchh
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-----LPLLQKLKTYVKHT-NPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-----~kll~~L~~~~~hK-n~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
.++..++++|.|.++...=||...-..|..+-..+.+ .++-..|..+.... ++.||-.+-.++..-++|++.+.
T Consensus 20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e 99 (501)
T PF13001_consen 20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEE 99 (501)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHH
Confidence 4788899999999988767777666666555555544 13444445566665 78999888877777777766443
Q ss_pred hhhccHHHHHHHHHHhcc
Q 022417 225 MKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~ 242 (297)
...+++.+.+++.
T Consensus 100 -----~~~llP~ll~~is 112 (501)
T PF13001_consen 100 -----RRELLPSLLKGIS 112 (501)
T ss_pred -----HHHHHHHHHHhhc
Confidence 4555666666665
No 220
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.55 E-value=8.7e+02 Score=28.43 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=100.3
Q ss_pred HHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHH
Q 022417 92 ARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVC 171 (297)
Q Consensus 92 LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~ 171 (297)
+++...+|..++...+..++...-..+++.--.|.--|+.....+|..+.. + .-.+++..|+...++.+..=.
T Consensus 418 l~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds--~-----~qqeVv~~Lvthi~sg~~~ev 490 (1426)
T PF14631_consen 418 LDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS--Y-----CQQEVVGALVTHIGSGNSQEV 490 (1426)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H--H-----HHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc--h-----hHHHHHHHHHHHHcCCcHHHH
Confidence 333445677777788888888888889999999999999999999988732 1 135688888888888765544
Q ss_pred HHHHHHHHHHHHhcCchhH------HHHHHhhccCCCH-HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCC
Q 022417 172 EEADRALNTMVESITPLPL------LQKLKTYVKHTNP-RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 172 e~A~~AL~~Mv~~~s~~kl------l~~L~~~~~hKn~-~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~ 244 (297)
+.|-..|..++.. .+..+ |..+..+..+=+. +||+ +-..|..+.---+.. .+...+.+.-.+.+.+.-.
T Consensus 491 ~~aL~vL~~L~~~-~~~~l~~fa~~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~--~s~i~del~ivIRKQLss~ 566 (1426)
T PF14631_consen 491 DAALDVLCELAEK-NPSELQPFATFLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSS--SSSIQDELHIVIRKQLSSS 566 (1426)
T ss_dssp HHHHHHHHHHHHH--HHHHHHTHHHHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS-----HHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCccc--chhhHHHHHHHHHHhhcCC
Confidence 5555555555543 22222 2233446666555 4554 344444433211211 1122577788888999988
Q ss_pred CHHHHHHHHHHHHHHHHHhccc
Q 022417 245 LPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 245 ~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
++..+..|=-...++-..++..
T Consensus 567 ~~~~K~~GIIGav~~i~~la~~ 588 (1426)
T PF14631_consen 567 NPKYKRIGIIGAVMMIKHLAAK 588 (1426)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHhHHHHHHHHHHHHHH
Confidence 9988888876666666666554
No 221
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=32.44 E-value=3.1e+02 Score=23.19 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHH-HcCCCCCCcchhhHHH-HHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcCc-------hh-HH
Q 022417 123 SALCKTSIMAASDIFS-AFGDKLLDSTSDALDN-LVLQLLMKASQD-KKFVCEEADRALNTMVESITP-------LP-LL 191 (297)
Q Consensus 123 S~Vsk~A~~tl~dLf~-~l~~~~md~~~~~ld~-ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s~-------~k-ll 191 (297)
..+.+.-|.+.||++- ..++ ......+.+.. ++..+...+... +..+...-...|....+.-.. .+ .=
T Consensus 43 ~~~~~~~le~y~ei~~~aWk~-a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~ 121 (152)
T PF12422_consen 43 PQVSKSVLELYGEILFRAWKK-ASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYE 121 (152)
T ss_pred ccccHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 6777778888888774 4444 21111122333 455555544443 666666667777766665411 11 22
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 192 QKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 192 ~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
|.|.++++..|..||..++..+....
T Consensus 122 PiL~r~L~~~n~~Vr~na~~l~~~aF 147 (152)
T PF12422_consen 122 PILWRALQAANAKVRSNAAALFLDAF 147 (152)
T ss_pred HHHHHHHcCCCcchhccHHHHHHHHc
Confidence 44568999999999999888776654
No 222
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=31.66 E-value=1.8e+02 Score=25.38 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 204 RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+|..+-.+++.+++ ......+...++..+..++.| ..++|-.+-.++..|
T Consensus 42 elRK~ayE~lytlLd----~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl 92 (169)
T PF08623_consen 42 ELRKAAYECLYTLLD----TCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKL 92 (169)
T ss_dssp HHHHHHHHHHHHHHH----STCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHH
No 223
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.15 E-value=4.4e+02 Score=24.60 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCh----hhhhHH---HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh----HHHHHH
Q 022417 89 LNNARRFALHHS----SLLEPN---LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA----LDNLVL 157 (297)
Q Consensus 89 L~~LRrLa~~h~----e~l~~~---L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~----ld~ll~ 157 (297)
+..++++-..-+ +++... ...++..++..+ +-|..+.+..+..+.||+..-.. .-+-..+. -.....
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~-~~~~~~~~~~~~~~~~~~ 108 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPS-RVELFLELAKQDDSDPYS 108 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH----HHHHHHHHHHHHHHHH-SSS-SHHHHHHHHH-TTH--HH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHhcccccchhHH
Confidence 555555553322 233322 333444444444 66999999999999999976443 22111000 011455
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCch------hHHHHHHhhc----cCCCHHHHHHHHHHHHHHHHhhCchhh--
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPL------PLLQKLKTYV----KHTNPRIRAKAAISISICVTKMGLEGM-- 225 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~----~hKn~~VR~~aA~~L~~~v~~~g~~~l-- 225 (297)
++|.-......||..-+-..|..+..+.+.. ..++.+...+ ++.+..+...+.++|..++..=.-...
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 6665334478999999999999998886532 3555554433 334455667777777777753221111
Q ss_pred hhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHH
Q 022417 226 KELGLVSLVQVAAGL---LNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 226 ~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~L 259 (297)
...++..+.+.+... -+-.+...-|++=-++|.|
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 123445555544211 2334455556666666654
No 224
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.11 E-value=1.3e+02 Score=29.19 Aligned_cols=62 Identities=24% Similarity=0.205 Sum_probs=45.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 194 LKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 194 L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
|..-+.+-||.||..+..++..+.-+ | .+....+-...++.+.+++.|..| ++.+++.+++.
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~-~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnl 69 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-G-LQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNL 69 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-c-hhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHH
Confidence 34556788999999999888888877 4 334445578889999999999887 66665555443
No 225
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=31.00 E-value=2.5e+02 Score=21.76 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=58.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 191 LQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 191 l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+......+.+.-+.||+..-..|..+++.-. ......+.++......+.|.++=+=-.|=+++..|-..+++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3444566778888999999999999998744 11234789999999999999999999999999999888865
No 226
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=30.67 E-value=80 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=48.7
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhh--hhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHHSSL--LEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFS 138 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~--l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~ 138 (297)
++.+.+.| .|+|=....=|++.|-.+++|||+- +...|+ .=..|...|.+.-..|-++|+.|++.|..
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45555555 3445455567889999999999852 222333 23468888999999999999999998863
No 227
>KOG1825 consensus Fry-like conserved proteins [General function prediction only]
Probab=29.27 E-value=3e+02 Score=33.22 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc-CchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI-TPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~-s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
.++.-+..|+. .+|.-|-..+..+|..|+.-- .-..+++.+.- +..+-+ .|-...-..+..++.+++.. ..
T Consensus 1168 ~l~~w~~~l~~---s~~~tiv~L~~~~l~~LL~lN~en~~Lf~~~i~qCys~~~-tiA~~yf~~L~~v~~~~~~p---~~ 1240 (2206)
T KOG1825|consen 1168 GLLGWTEALFH---SGNHTIVALAKLALKNLLLLNLENLVLFPAVIDQCYSSSA-TIASGYFSVLAEVYMRQDIP---KC 1240 (2206)
T ss_pred HHHHHHHHHhC---CCCchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcCCc---cc
Confidence 45555555533 466667777888887776654 55678888864 444333 44433344455555555533 24
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHhccchhhhHHHHHHHHHhcCChhhHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMY-NAFTENEEHKQEAWQSFCQSNLQPIDAQSMVK 292 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~-~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~ 292 (297)
+..+++..+-=.+.|-+-++|..|-.++-.++ ..|....--..+.|.+-+-..+.+.-++.+..
T Consensus 1241 d~~~Ll~L~L~~lv~~~~~ir~~A~~lle~l~tk~f~~t~~~~~~~~~a~~t~~l~~~~q~~~~s 1305 (2206)
T KOG1825|consen 1241 DIQRLLSLCLYKLVDNNESIRLDALQLLETLHTKLFAETGIMGFKEFLAAVTGTLYLSPQQFQSS 1305 (2206)
T ss_pred cHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhccccCcccccccccHHHhccCccCCccHHHHHH
Confidence 56788888888888889999999999999888 55543332233445555555555554444443
No 228
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=29.25 E-value=6.7e+02 Score=28.45 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCchh----HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 152 LDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITPLP----LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 152 ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~~k----ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
+..++...+.+.+. ++.-++..|..-|-+...+|...- .|..|+..+.++-..||.+.+..|..+.-+ .+++
T Consensus 573 ~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~--~pr~ 650 (1529)
T KOG0413|consen 573 VEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR--DPRL 650 (1529)
T ss_pred HHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh--Cchh
Confidence 57777777778765 788999999999999999998653 355566788999999999999888776544 2333
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH-HHHHhcc
Q 022417 226 KELGLVSLVQVAAGLLNDRLPEAREAARSMVNS-MYNAFTE 265 (297)
Q Consensus 226 ~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~-L~~~~~~ 265 (297)
.+. -.+-+.++.-.++|....+-++|++.+.. |-..|..
T Consensus 651 ~~~-~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~ 690 (1529)
T KOG0413|consen 651 FSL-SSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLEN 690 (1529)
T ss_pred hhh-hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhccc
Confidence 321 35666777788899999999999995544 3444433
No 229
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.05 E-value=4.7e+02 Score=23.89 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccCCCHHHHH
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA--SQDKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKHTNPRIRA 207 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka--~~sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~hKn~~VR~ 207 (297)
..+.|+|.......++ ... +..|+... .++.-.+...+-.-|..+....- +..-.. ...+.
T Consensus 40 ~ll~D~~al~~~g~~~-----~~~-~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~----------~~~~~ 103 (324)
T PF11838_consen 40 QLLDDLFALARAGRLS-----YSD-FLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQ----------EAFRK 103 (324)
T ss_dssp HHHHHHHHHHHTTSS------HHH-HHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHH----------HHHHH
T ss_pred HHHHHHHHHHHcCCCC-----HHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHH----------HHHHH
Confidence 3566777665553444 222 23333333 34666677777777666643222 111111 11333
Q ss_pred HHHHHHHHHHHhhCchhhh--hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 208 KAAISISICVTKMGLEGMK--ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 208 ~aA~~L~~~v~~~g~~~l~--~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
....++..+++++|-+... +.....+-..+...++ +++++...+++.+..+..
T Consensus 104 ~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~-~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 104 FVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC-GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhc
Confidence 4445666666776654331 1111222222244444 889999988888777655
No 230
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=28.00 E-value=6.3e+02 Score=25.39 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=107.3
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHH--cCCCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNP-RSALCKTSIMAASDIFSA--FGDKLL 145 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknL-RS~Vsk~A~~tl~dLf~~--l~~~~m 145 (297)
...++..|..+||--...+...+-.|+.+.+.-.. ..++.+...+...+++. .+...-.|+.|++.|... ++. .+
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~-~f 181 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF-AF 181 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH-HH
Confidence 45566777889999999999999999987665322 23444445555565543 355556666777777532 111 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHH--HHHHH---HHHHHhcCchhHHHHHHh--hccCCCHHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEE--ADRAL---NTMVESITPLPLLQKLKT--YVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~--A~~AL---~~Mv~~~s~~kll~~L~~--~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
-. .+.+ ..+..+|..+...-+-.=+. .-.-| ...+.......+++.|.. ....|-..||-..+. |-+++.
T Consensus 182 ~~-~~~v-~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~-l~Nll~ 258 (429)
T cd00256 182 VL-ADGV-PTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAI-FRNLIS 258 (429)
T ss_pred HH-ccCH-HHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHH-HHHHhh
Confidence 00 0112 33334444332110000000 00000 012223334567777754 333466667765554 556665
Q ss_pred hhCc---h-----hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCCh
Q 022417 219 KMGL---E-----GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQP 284 (297)
Q Consensus 219 ~~g~---~-----~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (297)
.-+. . .+...++.++++.+..-=- +++|..+.-..+-..|.+.+. ...+|..++.+..++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~-~DedL~edl~~L~e~L~~~~k-----~ltsfD~Y~~El~sg 326 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKY-DDEDLTDDLKFLTEELKNSVQ-----DLSSFDEYKSELRSG 326 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHhcC
Confidence 4211 1 1122244555554442222 468888877777777766664 356888888877665
No 231
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.94 E-value=4e+02 Score=26.88 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=60.8
Q ss_pred HhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHh
Q 022417 117 AMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKT 196 (297)
Q Consensus 117 ~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~ 196 (297)
.|.|++-.|.- +.-.|..+-...++.. ++.++.+| |+.+---+---.++|-+.|++.++|.-+..--..
T Consensus 113 eI~Dp~Id~~a-----l~~a~gsLY~dEveI~---l~dv~gvl---AaA~~lqldgl~qrC~evMie~lspkta~~yYea 181 (488)
T KOG4682|consen 113 EIPDPNIDVVA-----LQVAFGSLYRDEVEIK---LSDVVGVL---AAACLLQLDGLIQRCGEVMIETLSPKTACGYYEA 181 (488)
T ss_pred EcCCCcccHHH-----HHHHHhhhhhhheecc---HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhh
Confidence 45566655432 2233443333366665 45555544 2222222344568899999999999999998888
Q ss_pred hccCCCHHHHHHHHHHHHH-HHHhhCc
Q 022417 197 YVKHTNPRIRAKAAISISI-CVTKMGL 222 (297)
Q Consensus 197 ~~~hKn~~VR~~aA~~L~~-~v~~~g~ 222 (297)
+++=+--.|+.++-+||.+ ++..++.
T Consensus 182 ~ckYgle~vk~kc~ewl~~nl~~i~~~ 208 (488)
T KOG4682|consen 182 ACKYGLESVKKKCLEWLLNNLMTIQNV 208 (488)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhhH
Confidence 8888888999999988765 4444443
No 232
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=27.93 E-value=99 Score=18.91 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=20.0
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.++.|...+++.++.+++.++..|.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555555555778889988888887764
No 233
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=27.88 E-value=7.9e+02 Score=26.44 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCch----hHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 151 ALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITPL----PLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~~----kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
++.+-+..||.++.+ ...+|.+.+-+.+-...+.+... .++|.|-. ..+|-+..|+-.+.-|+..++++++...
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~ 464 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAA 464 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888876 67999999999999999988754 56777743 6678999999999999999997776544
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
+ -..+..+.+++.=.+|+.-..-=+++..
T Consensus 465 v-----~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 465 V-----LDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred h-----HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3 2233445556655567665444444433
No 234
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.72 E-value=3.7e+02 Score=22.57 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHHHHHHHhcCchhHHHHHHhh--ccCCCHHHHHHHHHHHHHHHH-hhCchhhhhccHHHHHHHHHHhcc
Q 022417 166 DKKFVCEEADRALNTMVESITPLPLLQKLKTY--VKHTNPRIRAKAAISISICVT-KMGLEGMKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 166 sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~--~~hKn~~VR~~aA~~L~~~v~-~~g~~~l~~~~~~~ll~~~a~~l~ 242 (297)
-..|+...+-.+|..+ +..+... .......+...+..||-.++. ..|...+.. ....+..++.++.
T Consensus 100 v~~Fl~~~G~~~L~~~---------L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~--~~~~v~~i~~~L~ 168 (187)
T PF06371_consen 100 VQEFLELGGLEALLNV---------LSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLS--HPDSVNLIALSLD 168 (187)
T ss_dssp HHHH-HHHHHHHHHHH---------HHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHC--SSSHHHHHHHT--
T ss_pred HHHhccCCCHHHHHHH---------HHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHc--CcHHHHHHHHHHC
Confidence 3578877777777666 4444322 123555666666666665554 344343333 4667788889999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 022417 243 DRLPEAREAARSMVNSM 259 (297)
Q Consensus 243 D~~pE~R~~aRk~l~~L 259 (297)
..++.+|..+-.+|..+
T Consensus 169 s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 169 SPNIKTRKLALEILAAL 185 (187)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998777653
No 235
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=27.72 E-value=2.1e+02 Score=25.07 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHh--cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH----------HHHh
Q 022417 173 EADRALNTMVES--ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV----------AAGL 240 (297)
Q Consensus 173 ~A~~AL~~Mv~~--~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~----------~a~~ 240 (297)
+...++..|-.. ++|...+..|.....+ +.||..+..+| +.++++.+..+ +..++++ ++.|
T Consensus 61 ~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~--~~VR~yAv~~L----~~~~d~~l~~y-LpQLVQaLr~e~~~~s~L~~f 133 (184)
T PF00613_consen 61 EVSEAYQLLLQWPPISPEDALELLSPNFPD--PFVRQYAVRRL----ESLSDEELLFY-LPQLVQALRYEPYHDSPLARF 133 (184)
T ss_dssp HHHHHHHHHHTSHCTTHHHHHHCTSTT-----HHHHHHHHHHH----CTS-HHHHHHH-HHHHHHHGGGSSSSS-HHHHH
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhhccH--HHHHHHHHHHH----HHcCchHHHHH-HHHHHHHheeccccccHHHHH
Confidence 344555555443 4455666666554444 99998877655 44554544333 3444433 2333
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 241 LNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 241 l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
|-+..-.-...|-..+|.|+.-..
T Consensus 134 Ll~ra~~s~~ia~~l~W~L~~e~~ 157 (184)
T PF00613_consen 134 LLRRALKSPRIAHQLFWYLKAELH 157 (184)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcc
Confidence 333333345678888888876653
No 236
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=27.54 E-value=5.7e+02 Score=24.71 Aligned_cols=175 Identities=11% Similarity=0.148 Sum_probs=110.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChh--------hhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSS--------LLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e--------~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
+..++..|..-||+.+-+.......+.++.++ .+..+.++++..++..-.++-++ ..+|+|.+.+-
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia------l~~g~mlRec~ 151 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA------LNCGDMLRECI 151 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH------HHHHHHHHHHT
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc------chHHHHHHHHH
Confidence 44667788888999988888777777765432 23444578888888888877764 46677776655
Q ss_pred CCCCCcchhhHHHHHHHH---------HHHhccccHHHHHHHHHHHHHHHHh----------cCchhHHHHHHhhccCCC
Q 022417 142 DKLLDSTSDALDNLVLQL---------LMKASQDKKFVCEEADRALNTMVES----------ITPLPLLQKLKTYVKHTN 202 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~L---------L~Ka~~sn~FI~e~A~~AL~~Mv~~----------~s~~kll~~L~~~~~hKn 202 (297)
+. +.++..+ +.-....+-=|+.+|=.++..+... .+..+....+...+.+.|
T Consensus 152 k~---------e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N 222 (335)
T PF08569_consen 152 KH---------ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN 222 (335)
T ss_dssp TS---------HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS
T ss_pred hh---------HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 51 1122222 2222223444677777777654432 123345555556778999
Q ss_pred HHHHHHHHHHHHHHHH-hhCchhhhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 203 PRIRAKAAISISICVT-KMGLEGMKEL-GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 203 ~~VR~~aA~~L~~~v~-~~g~~~l~~~-~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
=..|++.-++|..++. +..-.-+..| +-...+..+..++.|.+.-+|.-|-.++..+
T Consensus 223 YvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 223 YVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred eEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 9999999999999885 4333323333 3578899999999999999999998887643
No 237
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.79 E-value=2.3e+02 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=48.6
Q ss_pred chhHHHHHHhhccC-CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 187 PLPLLQKLKTYVKH-TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 187 ~~kll~~L~~~~~h-Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
...++..-+..+.+ .-|..|.=++.||-.+-+.....+... ..+.-.+-+...+.|..||||.+|=-+|..+-+-+.
T Consensus 597 ~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G-~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~ 674 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSG-RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGS 674 (1387)
T ss_pred cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcc-ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccc
Confidence 33455544455554 357778666666655555444333222 134444555667889999999999999999888753
No 238
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.78 E-value=3.5e+02 Score=22.04 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=42.4
Q ss_pred cCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 77 L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+.+.||....+=...|+.- ...-.+.++.|.+-+++....|...|+..+-.+....|.
T Consensus 13 ~~~~D~~~il~icd~I~~~--------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~ 70 (133)
T cd03561 13 LEEPDWALNLELCDLINLK--------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGK 70 (133)
T ss_pred cCCccHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 4567898888777666543 122366777888888888888888888888888877777
No 239
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.20 E-value=4e+02 Score=22.53 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH
Q 022417 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL 191 (297)
Q Consensus 112 ~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll 191 (297)
..+.+.+++-..=+-|.|+.++...+.. +. + ++.++..+-.-..+...||+.+...+|..+... .|.+++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~---~-----~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~-~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ET---D-----FDLLLEIIERLLHDEEYFVQKAVGWALREYGKK-DPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cc---c-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 5777889999999999999999888766 11 1 444554444444568899999999999998777 777888
Q ss_pred HHHHhh
Q 022417 192 QKLKTY 197 (297)
Q Consensus 192 ~~L~~~ 197 (297)
..+...
T Consensus 178 ~~l~~~ 183 (197)
T cd06561 178 AFLEKN 183 (197)
T ss_pred HHHHHH
Confidence 888653
No 240
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=25.94 E-value=7.1e+02 Score=25.26 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=89.3
Q ss_pred cccHHHHHhccCCc--CHHHHHHHHHHH---HHHHhhChhhhhHHHHHHH-HHHHHHhc--------CcchHHHHHHHHH
Q 022417 67 ESMIPCLIEGLDSK--DWTNVCESLNNA---RRFALHHSSLLEPNLEKVM-AVVVKAMK--------NPRSALCKTSIMA 132 (297)
Q Consensus 67 e~~l~~~l~~L~s~--dW~~~~eaL~~L---RrLa~~h~e~l~~~L~~i~-~~v~~~vk--------nLRS~Vsk~A~~t 132 (297)
...++-+..+|.+. +=.-+.-++..+ -....+.+..+...+..++ ..+.+.+. +.....=.-|-.|
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 34555666777666 444445566666 4444444443333333333 23344442 2344555678889
Q ss_pred HHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh---------HHHHH-HhhccCCC
Q 022417 133 ASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP---------LLQKL-KTYVKHTN 202 (297)
Q Consensus 133 l~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k---------ll~~L-~~~~~hKn 202 (297)
+|.|.+.... .+... -.++.-|+....++..=++-....||..|..+..... .+..| ..+..+..
T Consensus 398 lG~L~~~~p~-l~~~d----~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~ 472 (501)
T PF13001_consen 398 LGLLAKRAPS-LFSKD----LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEV 472 (501)
T ss_pred HHHHHccCcc-ccccc----HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchh
Confidence 9999887666 44322 2455555555556677788899999999988865311 22222 23555666
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 022417 203 PRIRAKAAISISICVTKMG 221 (297)
Q Consensus 203 ~~VR~~aA~~L~~~v~~~g 221 (297)
..+|..+.+|...|+.-.+
T Consensus 473 ~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 473 RSCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 7788888888888876543
No 241
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair]
Probab=25.90 E-value=1.7e+02 Score=29.19 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=52.9
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHHHHHhccchhh
Q 022417 193 KLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL---LNDRLPEAREAARSMVNSMYNAFTENEEH 269 (297)
Q Consensus 193 ~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~L~~~~~~~~~~ 269 (297)
.|+...+---+.+|.-+..++....+++|.+.+--. ...++ ..+.. ..|+-.---..+..+.-.|++.|..
T Consensus 22 sll~~~~~s~~e~~~vt~~~i~qf~qkf~~~~~~ik-~qn~~-~~~e~a~~~~~~~l~~~q~~~~~~~yl~~i~~~---- 95 (458)
T KOG2405|consen 22 SLLNDLKYSPSEEEEVTYTVINQFQQKFGAAILHIK-KQNVL-VAAEGANVCRHGKLCWLQVATNCRVYLFDIFLL---- 95 (458)
T ss_pred hhhcccccCCchhhhhHHHHHHHHHHHHhHHHHhhH-hhcCc-ccccCccccccCcchhHHHHHHHHHHHHHHHHh----
Confidence 344444445568888888888888888886543111 01111 11111 1222111122333444556777754
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHhh
Q 022417 270 KQEAWQSFCQSNLQPIDAQSMVKII 294 (297)
Q Consensus 270 ~~~~~~~~~~~~l~~~~a~~~~~~~ 294 (297)
+.-.|++|||+-+.. +.|+|+.
T Consensus 96 ~~~~~~n~~q~~~~~---k~i~~~~ 117 (458)
T KOG2405|consen 96 GSRAFHNGLQMILED---KRILKVI 117 (458)
T ss_pred hhHHHHHHHHHHhhh---hhHhhhH
Confidence 348999999999987 7777763
No 242
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.39 E-value=1e+03 Score=30.55 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHH----cCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSA----FGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~----l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
.+++|+..+..--+.+++.+.+++.-+|.. ||+..-..-..-+..++..+.+..-+..-.-+.-+-.++..++.++
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Q ss_pred CchhHHHH--------------HHhhccC-CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHH
Q 022417 186 TPLPLLQK--------------LKTYVKH-TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEARE 250 (297)
Q Consensus 186 s~~kll~~--------------L~~~~~h-Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~ 250 (297)
+..-++.. +....++ +-..++...-..+..+....+.+....+-...++..+...+.+.+..||+
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~ 1144 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVRE 1144 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHH
Q ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChh
Q 022417 251 AARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPI 285 (297)
Q Consensus 251 ~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (297)
.+.+.+..+.+..+..-..=.+.+..++ +.|.
T Consensus 1145 ~~~~~L~~i~~~s~~~v~~L~~p~K~~l---l~p~ 1176 (3550)
T KOG0889|consen 1145 FSQKLLRLISELSGKSVVKLLEPFKDVL---LSPI 1176 (3550)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH---hccc
No 243
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.25 E-value=1.3e+02 Score=33.14 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 127 KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 127 k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
+.++-.+|.++...|. +++++ +-.-+=++|.|.++.+..|+..|..|+-.|+..|.+
T Consensus 566 Ci~ld~I~~~a~~~g~-~F~~~---L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y 622 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGE-EFQPE---LMDYLYPVLEKLASPSEAISQVAQSCALRIADALNY 622 (1014)
T ss_pred hhhhhhhHHHHHHhHH-HHHHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCC
Confidence 4466678888888898 88875 566667888899999999999999999999999876
No 244
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=25.18 E-value=4.2e+02 Score=22.35 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=44.3
Q ss_pred chhHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHH-HHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVK--HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPE-AREAARSMVN 257 (297)
Q Consensus 187 ~~kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE-~R~~aRk~l~ 257 (297)
...+++.+...+. .++..+...++++|...+-. +....+..+..++.+.++.. +.+.. +|..|=-.+.
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 4467777776555 78888888888888776653 33345556777888888884 44444 5777655554
No 245
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.93 E-value=1.2e+03 Score=27.62 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--
Q 022417 109 KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-- 186 (297)
Q Consensus 109 ~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-- 186 (297)
..+..|+..+...--+|=-.|+.|++.|.+.=.- .+- -..+-.+.-.|..|+..-|||+|-.-+..-|-+.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~-vL~-----~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS-VLS-----RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH-hhc-----CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 3333444444443334444788899988854111 111 23344444557788888899988877776655544
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhc---cCCCHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLL---NDRLPEAREAARSMVNS 258 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l---~D~~pE~R~~aRk~l~~ 258 (297)
..+--..|.....+-...||..+-+.+-.+++.... ...+..++++.+ +|--.-+..-++..|..
T Consensus 890 ~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-------f~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 890 IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-------FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-------hhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 336666677788888899999998888888776442 344555555544 34333344555544443
No 246
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=24.84 E-value=3.1e+02 Score=23.25 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHH--hcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHH
Q 022417 171 CEEADRALNTMVE--SITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVA 237 (297)
Q Consensus 171 ~e~A~~AL~~Mv~--~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~ 237 (297)
.++...+...|-. .+++..++..|.....+ +.||..+.++| +.++++.+..+ +..++|++
T Consensus 53 ~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~--~~vr~yAv~~L----~~~~~~~l~~y-lpQLVQaL 114 (152)
T cd00864 53 DEEVSELYQLLKWWAPLSPEDALELLSPKYPD--PVVRQYAVRVL----ESASDDELLLY-LPQLVQAL 114 (152)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCC--HHHHHHHHHHH----HhCCHHHHHHH-HHHHHHHH
Confidence 3444455555544 25566777777665443 89998776544 55666665444 55555554
No 247
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.33 E-value=4.2e+02 Score=22.11 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=55.9
Q ss_pred CccccHHHHHhccCCcCHHHHHHHHHHHHHHHhh-----ChhhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHH
Q 022417 65 DPESMIPCLIEGLDSKDWTNVCESLNNARRFALH-----HSSLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFS 138 (297)
Q Consensus 65 ~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-----h~e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~ 138 (297)
.|+.++..+-..|.+.+=..+.-||..|-.+++. |.++.. .+++..+.+.+. +.-..|.+-.+..+..-..
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas---~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS---REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh---HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999999999964 333333 233333444443 5566788888888888888
Q ss_pred HcCC
Q 022417 139 AFGD 142 (297)
Q Consensus 139 ~l~~ 142 (297)
.|++
T Consensus 115 ~f~~ 118 (142)
T cd03569 115 AFRN 118 (142)
T ss_pred HhCC
Confidence 8887
No 248
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.19 E-value=1.2e+03 Score=27.20 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=126.8
Q ss_pred ceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHH
Q 022417 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSI 130 (297)
Q Consensus 52 v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~ 130 (297)
..|.+.....-+.+-+..+..++..|...|=..++.||..+-.+... ..+...+.++.....+.+.+.|--=.|=....
T Consensus 25 ~n~~~~~~~~~~~~~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~ 104 (1312)
T KOG0803|consen 25 INSASSNPDPFVLELDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTH 104 (1312)
T ss_pred ccccccCCChHHhccCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHH
Confidence 33433333333344677888999999999999999999999999852 33444456666677777777776555555555
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHH---------HHHhcCc--------------
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNT---------MVESITP-------------- 187 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~---------Mv~~~s~-------------- 187 (297)
..+..+-..+++ .+-|+ +-.+++..+-=..+...-++..|-.+... .+..|.+
T Consensus 105 ~v~s~l~t~lkk-~lsp~---LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~ 180 (1312)
T KOG0803|consen 105 DVFSKLLTKLKK-KLSPF---LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKET 180 (1312)
T ss_pred HHHHHHHHHHHH-HhhHH---HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccC
Confidence 666677777888 77775 44455444443333333333333333221 1111111
Q ss_pred hhHH---HHHH-hhccCCCHHHHHHHHHHHHHHHHhhCchhhhh-----ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 188 LPLL---QKLK-TYVKHTNPRIRAKAAISISICVTKMGLEGMKE-----LGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 188 ~kll---~~L~-~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~-----~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
...+ ..+. ..+..|.++|-+.+-.++..++...|...-+. +..-.-.+..-+++.+..|-+|.+....+..
T Consensus 181 ~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~ 260 (1312)
T KOG0803|consen 181 PDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLS 260 (1312)
T ss_pred ccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 1111 2222 35667788888888888888887766544222 2233445667778889999999999988877
Q ss_pred HHHHh
Q 022417 259 MYNAF 263 (297)
Q Consensus 259 L~~~~ 263 (297)
+-+-.
T Consensus 261 l~~~i 265 (1312)
T KOG0803|consen 261 LIDDI 265 (1312)
T ss_pred HHhhh
Confidence 64433
No 249
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.17 E-value=3.4e+02 Score=20.98 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=25.2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhh-CchhhhhccHHHHHHHHHHhccC
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKM-GLEGMKELGLVSLVQVAAGLLND 243 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~-g~~~l~~~~~~~ll~~~a~~l~D 243 (297)
++..+...+-+++..-|..++.++..+++.- -...-...|...+++.+-.+.-|
T Consensus 37 vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D 91 (113)
T smart00544 37 VVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELD 91 (113)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcc
Confidence 3444444444455566666666666666431 11111223445555555444444
No 250
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=23.51 E-value=1.4e+02 Score=25.24 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=37.8
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh--hhhh-HHHHHHHHHHHHHh
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHS--SLLE-PNLEKVMAVVVKAM 118 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~--e~l~-~~L~~i~~~v~~~v 118 (297)
..+..++..|.|+.=..|-+||..++++....+ +.+. ..++.|...|...|
T Consensus 4 ~~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i 57 (155)
T PF11640_consen 4 LDINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCI 57 (155)
T ss_pred chHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHH
Confidence 346778999999999999999999999998665 4343 35566655554443
No 251
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.47 E-value=4.4e+02 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
.+.+..+.+|....|.-+.--|=..|+++++||.+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~ 71 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGE 71 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 45566666676677766766777777888888875
No 252
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.17 E-value=3.4e+02 Score=20.60 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=44.7
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 197 YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 197 ~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
.....+..||...-.|+..++..-| +.+ ..|-+.++.++.....|.+.+.=..|-+++
T Consensus 26 ~~~~~~~~vre~il~ci~qil~~~~-~~i-~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 26 MSNNPSIDVRELILECILQILQSRG-ENI-KSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHhH-HHH-HhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3566889999999999999999877 445 445788888888888888777766665544
No 253
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=23.01 E-value=1.2e+03 Score=27.09 Aligned_cols=184 Identities=14% Similarity=0.115 Sum_probs=96.7
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc---
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST--- 148 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~--- 148 (297)
-+...+....|+.++.+|.-+|....-..+.+...+..+.+.++.-+.+.--.|...|..++.-....+-+ .+-..
T Consensus 171 il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~-l~~~~i~~ 249 (1549)
T KOG0392|consen 171 ILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVK-LMVQKIAK 249 (1549)
T ss_pred HHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHh-hhHhHHHH
Confidence 33344466689999999999998876556666666667777777666666666666777766666665533 33322
Q ss_pred -hhhHHHHHHHHHHHhccccHHHHHHHHHHH-HH----HHHhcC-chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 149 -SDALDNLVLQLLMKASQDKKFVCEEADRAL-NT----MVESIT-PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 149 -~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL-~~----Mv~~~s-~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
...+...+.-|+. .+.++.-++.-.+.=+ +. +-...+ ...++|-+++-+.|-=..+|.++...+..+.+--+
T Consensus 250 lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 250 LVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111112222222 2222222222111111 11 011111 23455566666666666788888777777776433
Q ss_pred chh-hhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 222 LEG-MKELG-LVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 222 ~~~-l~~~~-~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
... +.... .+.+-..-..++-+..+|.-..--+.+.
T Consensus 329 qs~~~~~~~l~~~~r~ifq~ll~e~~~e~L~~~~~~~v 366 (1549)
T KOG0392|consen 329 QSDSWQIRILGKLFRKIFQILLLESFNEILDLSEKVWV 366 (1549)
T ss_pred CCCccchhhhHHHHHHHHHHHHhCCcHHHHHhhhheee
Confidence 222 11111 2233333345567777776665555444
No 254
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=21.84 E-value=2.9e+02 Score=21.54 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChh
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPI 285 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (297)
+..++..++++.+| ...+|..+|+++..+++.+. |.| ..-+..++..
T Consensus 28 ~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~-------D~W-~~~~~~Ft~~ 74 (90)
T PF11919_consen 28 MPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ-------DTW-HEHKKKFTED 74 (90)
T ss_dssp HHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS-------TTH-HHHGGG--SS
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc-------ccH-HHHHHhCCHH
Confidence 68888889999998 88899999999999999885 678 5555555554
No 255
>PF03752 ALF: Short repeats of unknown function; InterPro: IPR005506 This set of repeats is found in a small family of secreted proteins of no known function, which may be involved in signal transduction.
Probab=21.39 E-value=1.2e+02 Score=20.22 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHhccCCCHHHHHHHHHHH
Q 022417 237 AAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 237 ~a~~l~D~~pE~R~~aRk~l 256 (297)
+..++.++.|.+|..|..+|
T Consensus 4 v~~l~~~gG~~vr~AA~~AL 23 (43)
T PF03752_consen 4 VVQLLASGGPAVRAAAQAAL 23 (43)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 45677788999999999987
No 256
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=21.21 E-value=5.1e+02 Score=21.92 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh--hhhccHHHHHHHHHHhccC--C
Q 022417 169 FVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKELGLVSLVQVAAGLLND--R 244 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~--l~~~~~~~ll~~~a~~l~D--~ 244 (297)
..-..+..+|..|...++.+.+-..|..+... .+..+ ..|..|++.+|.+- ....++..++.....++.. +
T Consensus 15 ~aE~q~~~~l~~~~~~a~~~~L~~~l~~h~~e----T~~q~-~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~~~ 89 (159)
T PF05974_consen 15 SAEKQLLKALPKLAEAASSPELKAALEEHLEE----TEQQI-ERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEFAE 89 (159)
T ss_dssp HHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHH----HHHHH-HHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT-S-
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH----HHHHH-HHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcccC
Confidence 34455667788888877776666666555432 22222 23778888888542 2224577777777777766 7
Q ss_pred CHHHHHHHH
Q 022417 245 LPEAREAAR 253 (297)
Q Consensus 245 ~pE~R~~aR 253 (297)
++.+|..+=
T Consensus 90 d~~~~D~~l 98 (159)
T PF05974_consen 90 DPAVKDAAL 98 (159)
T ss_dssp SHHHHHHHH
T ss_pred CchHhhHHH
Confidence 888998874
No 257
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.02 E-value=5.2e+02 Score=21.93 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q 022417 112 AVVVKAMKNPR-SALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTM 181 (297)
Q Consensus 112 ~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~M 181 (297)
..+...++|.. |+-=..+++++..+|+.+|.+. -+ .++.+++.++.-.-....-++|..=.-|..+
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~---~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VP---YLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hh---HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44455555422 2222267888899999988854 33 4888888887766544435555444444333
No 258
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=20.54 E-value=6.3e+02 Score=22.71 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=51.4
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM-KNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLV 156 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v-knLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll 156 (297)
++.+|+..+.--..+|.++...|+ .-.+++..|...+ ++==..+...|+..+..|| +...+| +..+.
T Consensus 94 ~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc---~~~vvd-----~~s~w 161 (234)
T PF12530_consen 94 KDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC---EAEVVD-----FYSAW 161 (234)
T ss_pred CcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH---HHhhcc-----HHHHH
Confidence 456899999988999999998988 3355555555555 4444445566777777777 333444 56666
Q ss_pred HHHHHHhccc
Q 022417 157 LQLLMKASQD 166 (297)
Q Consensus 157 ~~LL~Ka~~s 166 (297)
..+.+|.+.+
T Consensus 162 ~vl~~~l~~~ 171 (234)
T PF12530_consen 162 KVLQKKLSLD 171 (234)
T ss_pred HHHHHhcCCc
Confidence 6666666543
No 259
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=20.49 E-value=7.5e+02 Score=23.60 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=102.6
Q ss_pred ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHH
Q 022417 99 HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRAL 178 (297)
Q Consensus 99 h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL 178 (297)
.++.+...++=....+...+..=..+|--.-+.-....|--+|. .+.+. +..++..||.=.-+.+.=+-+.+..-|
T Consensus 87 g~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~---l~~li~slLpGLede~sE~~~~~~~ll 162 (307)
T PF04118_consen 87 GPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPC---LKGLILSLLPGLEDEGSEFFDRTLKLL 162 (307)
T ss_pred CHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHH---HHHHHHHhccccccCCchHHHHHHHHH
Confidence 44555555555566666666544444433333333333334444 33332 455555555433346666677788889
Q ss_pred HHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC------ch----hhhhccHHHHHHHHHHhccCCCHHH
Q 022417 179 NTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG------LE----GMKELGLVSLVQVAAGLLNDRLPEA 248 (297)
Q Consensus 179 ~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g------~~----~l~~~~~~~ll~~~a~~l~D~~pE~ 248 (297)
+.+...+........++-..- .||.+|..+-.|+..-+.+.+ .. .+......-++.++..+++|.+-=|
T Consensus 163 ~~l~~~v~~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLV 241 (307)
T PF04118_consen 163 DKLKEAVGDKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILV 241 (307)
T ss_pred HHHHHhcChhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHH
Confidence 999999988888888875443 788899988888888777655 11 1122346889999999999986665
Q ss_pred HHHHHHHHHHHHHHhccch
Q 022417 249 REAARSMVNSMYNAFTENE 267 (297)
Q Consensus 249 R~~aRk~l~~L~~~~~~~~ 267 (297)
+ |.++..|-.+|+-+.
T Consensus 242 q---R~~LDlLl~~~PL~s 257 (307)
T PF04118_consen 242 Q---RGFLDLLLSHFPLDS 257 (307)
T ss_pred H---HHHHHHHHHhCCCCC
Confidence 5 667777888887654
No 260
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.24 E-value=1e+03 Score=25.66 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=66.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHH---HHHHHHHH-cCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIM---AASDIFSA-FGDKL 144 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~---tl~dLf~~-l~~~~ 144 (297)
+|+.++.+|.|..=..|..-...|..+..+-+++=...+-+++......-.+...+-.|.... -++.+... .|. .
T Consensus 4 ~l~RLirGl~S~r~~aR~Gfs~~Lte~l~~~~~~~~~~vl~ll~~~~~~~~~~~g~e~~~~~~g~~~~~~~~~l~~~~-l 82 (784)
T PF04931_consen 4 ALKRLIRGLASSRESARLGFSLALTELLSQLPEISVSSVLDLLKKKLQVSGSMKGQEERDHFFGFGLFFGLAALQSGR-L 82 (784)
T ss_pred hHHHHhcccCCChHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhcccccccchhhhHHHHHHHHhcccHHHHHHhH-H
Confidence 578889999999888888877777777766665332333333333333333455544454441 12222211 122 2
Q ss_pred CCcc---hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch
Q 022417 145 LDST---SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 145 md~~---~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
+... .+.+-.++.. |.+.+..+.|+++.....+...+......
T Consensus 83 ~~~~~~~~e~~~~~l~~-l~~l~~~k~~l~e~~~~~l~~~l~~~~~~ 128 (784)
T PF04931_consen 83 FKEKASLNEPLFSVLDL-LLKLSSKKSWLRESCGWVLVQALKESWFE 128 (784)
T ss_pred hcCCcccHHHHHHHHHH-HHhhhhchHHHHHHHHHHHHHHHHhcchh
Confidence 2211 1123333322 45667789999999999998888877533
Done!