Query 022417
Match_columns 297
No_of_seqs 141 out of 249
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 05:09:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 99.9 1E-20 3.6E-25 168.3 18.8 205 52-265 4-209 (242)
2 2qk1_A Protein STU2; STU2P, XM 99.8 4.5E-19 1.5E-23 160.7 20.7 207 49-266 2-225 (249)
3 4ffb_C Protein STU2; tubulin f 99.7 1.3E-15 4.5E-20 138.6 17.2 193 73-265 14-216 (278)
4 2of3_A ZYG-9; multifunctional 99.6 6.7E-13 2.3E-17 122.0 22.4 201 72-286 50-253 (266)
5 2iw3_A Elongation factor 3A; a 99.5 6.4E-14 2.2E-18 148.4 15.3 182 69-265 134-328 (986)
6 1b3u_A Protein (protein phosph 99.0 1.2E-08 4E-13 99.1 16.4 178 70-260 404-586 (588)
7 1b3u_A Protein (protein phosph 98.8 1.1E-07 3.6E-12 92.3 16.4 186 70-265 283-474 (588)
8 1ibr_B P95, importin beta-1 su 98.7 2E-06 6.9E-11 80.7 19.7 195 70-265 219-441 (462)
9 4db6_A Armadillo repeat protei 98.7 8E-07 2.7E-11 75.5 15.4 190 66-259 10-207 (210)
10 2bpt_A Importin beta-1 subunit 98.6 1.1E-06 3.7E-11 89.3 18.6 191 69-265 499-715 (861)
11 4fdd_A Transportin-1; heat rep 98.6 1.7E-06 5.8E-11 89.2 20.1 192 70-265 361-561 (852)
12 4fdd_A Transportin-1; heat rep 98.6 9E-07 3.1E-11 91.3 17.9 191 68-264 215-432 (852)
13 1qgr_A Protein (importin beta 98.6 3.1E-06 1.1E-10 86.2 20.2 188 70-261 651-871 (876)
14 1u6g_C TIP120 protein, CAND1; 98.6 4.4E-06 1.5E-10 89.5 21.9 190 73-265 439-683 (1230)
15 2bpt_A Importin beta-1 subunit 98.6 2.8E-06 9.6E-11 86.3 19.1 192 69-265 598-816 (861)
16 1qgr_A Protein (importin beta 98.5 1.1E-05 3.8E-10 82.0 22.2 195 70-265 219-441 (876)
17 3ltm_A Alpha-REP4; protein eng 98.5 4.9E-06 1.7E-10 71.0 16.5 125 63-215 14-138 (211)
18 1u6g_C TIP120 protein, CAND1; 98.5 1.1E-05 3.9E-10 86.3 22.6 192 70-266 376-603 (1230)
19 2qk2_A LP04448P; mini spindles 98.5 9.9E-06 3.4E-10 71.2 18.2 150 68-227 56-214 (242)
20 4hxt_A De novo protein OR329; 98.5 6E-06 2.1E-10 71.1 16.5 189 69-261 3-199 (252)
21 4hxt_A De novo protein OR329; 98.5 4.2E-06 1.5E-10 72.1 15.2 192 69-265 45-245 (252)
22 3ltj_A Alpharep-4; protein eng 98.4 1.1E-05 3.6E-10 68.4 16.5 153 67-259 13-165 (201)
23 3ltm_A Alpha-REP4; protein eng 98.4 1.7E-05 5.8E-10 67.6 17.8 157 68-264 50-206 (211)
24 4db8_A Armadillo-repeat protei 98.4 3.2E-06 1.1E-10 73.6 11.9 187 69-259 55-249 (252)
25 1ibr_B P95, importin beta-1 su 98.4 2.5E-05 8.6E-10 73.2 18.8 195 68-265 128-361 (462)
26 2qk1_A Protein STU2; STU2P, XM 98.4 3.4E-05 1.2E-09 69.2 18.7 157 68-227 60-229 (249)
27 4db8_A Armadillo-repeat protei 98.4 5.5E-06 1.9E-10 72.1 13.2 192 63-260 7-208 (252)
28 3ltj_A Alpharep-4; protein eng 98.3 4E-05 1.4E-09 64.7 17.8 154 68-261 45-198 (201)
29 2jdq_A Importin alpha-1 subuni 98.3 8.6E-06 2.9E-10 76.4 14.2 193 67-263 191-392 (450)
30 1oyz_A Hypothetical protein YI 98.3 2.1E-05 7.3E-10 69.9 16.0 129 68-215 23-154 (280)
31 1wa5_B Importin alpha subunit; 98.3 9.2E-06 3.1E-10 79.2 14.2 193 68-264 257-460 (530)
32 2jdq_A Importin alpha-1 subuni 98.2 3.4E-05 1.2E-09 72.2 16.1 187 69-259 108-303 (450)
33 1wa5_B Importin alpha subunit; 98.2 1.4E-05 4.9E-10 77.8 14.0 190 68-261 299-510 (530)
34 4b8j_A Importin subunit alpha- 98.1 2.6E-05 8.9E-10 75.7 12.8 193 67-265 243-447 (528)
35 4b8j_A Importin subunit alpha- 98.0 7.7E-05 2.6E-09 72.3 14.3 188 69-260 287-495 (528)
36 1oyz_A Hypothetical protein YI 98.0 0.00026 8.9E-09 62.8 16.6 165 68-259 54-219 (280)
37 2vgl_B AP-2 complex subunit be 97.9 0.00043 1.5E-08 69.0 17.5 183 72-264 125-314 (591)
38 2vgl_B AP-2 complex subunit be 97.9 0.00024 8.2E-09 70.8 15.5 178 67-261 12-189 (591)
39 1xqr_A HSPBP1 protein; armadil 97.7 0.0007 2.4E-08 62.4 13.9 189 66-262 26-239 (296)
40 2iw3_A Elongation factor 3A; a 97.6 0.001 3.4E-08 70.8 15.4 151 109-266 54-209 (986)
41 4db6_A Armadillo repeat protei 97.6 0.00054 1.8E-08 57.7 10.9 146 69-217 55-208 (210)
42 3ul1_B Importin subunit alpha- 97.5 0.00032 1.1E-08 68.5 10.4 194 67-264 231-433 (510)
43 3tpo_A Importin subunit alpha- 97.5 0.0007 2.4E-08 66.3 12.8 194 67-264 250-452 (529)
44 1xqr_A HSPBP1 protein; armadil 97.5 0.0044 1.5E-07 57.0 16.5 187 70-260 83-286 (296)
45 3tpo_A Importin subunit alpha- 97.5 0.0018 6.3E-08 63.3 14.7 182 70-259 295-495 (529)
46 3b2a_A TON_1937, putative unch 97.5 0.016 5.5E-07 52.3 19.1 180 67-256 32-213 (265)
47 1jdh_A Beta-catenin; beta-cate 97.3 0.012 4.2E-07 56.0 18.3 182 69-259 60-293 (529)
48 3ul1_B Importin subunit alpha- 97.3 0.0028 9.6E-08 61.8 13.5 183 70-259 276-476 (510)
49 3tjz_B Coatomer subunit gamma; 97.1 0.027 9.1E-07 53.4 17.1 184 61-261 17-205 (355)
50 1w63_A Adapter-related protein 97.1 0.0036 1.2E-07 62.8 11.8 165 75-259 41-206 (618)
51 2z6g_A B-catenin; FULL-length, 97.0 0.047 1.6E-06 56.2 19.4 180 69-259 235-426 (780)
52 2z6g_A B-catenin; FULL-length, 96.9 0.013 4.3E-07 60.5 14.4 179 69-259 116-303 (780)
53 2z6h_A Catenin beta-1, beta-ca 96.8 0.028 9.7E-07 56.0 16.2 185 69-261 99-292 (644)
54 2z6h_A Catenin beta-1, beta-ca 96.6 0.037 1.3E-06 55.2 14.8 146 69-218 15-169 (644)
55 1jdh_A Beta-catenin; beta-cate 96.6 0.096 3.3E-06 49.7 17.0 181 69-258 144-382 (529)
56 2vgl_A Adaptor protein complex 96.5 0.057 1.9E-06 54.3 15.8 139 110-261 75-216 (621)
57 1wa5_C Importin alpha RE-expor 96.3 0.2 6.8E-06 52.4 18.9 177 65-244 360-560 (960)
58 4ffb_C Protein STU2; tubulin f 96.3 0.17 5.8E-06 45.0 16.0 140 75-223 62-217 (278)
59 3nmw_A APC variant protein; AR 96.3 0.086 3E-06 49.5 14.4 185 70-261 129-334 (354)
60 3now_A UNC-45 protein, SD10334 96.2 0.063 2.2E-06 56.0 14.4 188 69-263 581-784 (810)
61 3b2a_A TON_1937, putative unch 96.2 0.66 2.3E-05 41.8 18.9 184 68-263 75-263 (265)
62 1xm9_A Plakophilin 1; armadill 96.1 0.038 1.3E-06 53.0 11.5 184 68-258 2-217 (457)
63 1te4_A Conserved protein MTH18 96.1 0.026 9E-07 44.5 8.7 79 163-257 51-129 (131)
64 1w63_A Adapter-related protein 96.1 0.13 4.5E-06 51.4 15.5 69 187-261 507-577 (618)
65 3now_A UNC-45 protein, SD10334 95.9 0.1 3.5E-06 54.5 14.4 187 70-261 497-694 (810)
66 2db0_A 253AA long hypothetical 95.9 0.61 2.1E-05 40.9 16.8 176 67-259 31-208 (253)
67 3nmz_A APC variant protein; pr 95.9 0.24 8.2E-06 48.2 15.9 185 70-261 245-450 (458)
68 3oc3_A Helicase MOT1, MOT1; re 95.8 0.0073 2.5E-07 60.8 4.6 190 36-257 236-432 (800)
69 2vgl_A Adaptor protein complex 95.6 0.6 2E-05 46.8 18.1 181 70-262 113-359 (621)
70 2x19_B Importin-13; nuclear tr 95.4 0.49 1.7E-05 48.9 16.9 131 125-264 465-602 (963)
71 3ldz_A STAM-1, signal transduc 95.1 0.21 7.3E-06 40.8 10.7 94 187-280 40-135 (140)
72 3tt9_A Plakophilin-2; cell adh 95.1 1.1 3.9E-05 39.5 16.2 178 66-246 6-212 (233)
73 1x5b_A Signal transducing adap 95.1 0.19 6.7E-06 42.2 10.6 96 186-281 49-147 (163)
74 3tjz_B Coatomer subunit gamma; 94.9 0.024 8.1E-07 53.7 5.1 98 72-183 108-205 (355)
75 2x19_B Importin-13; nuclear tr 94.8 0.62 2.1E-05 48.1 15.7 178 78-264 459-652 (963)
76 3g2s_A C-terminal fragment of 94.6 0.37 1.3E-05 40.0 11.1 91 187-278 46-142 (149)
77 4hat_C Exportin-1; heat repeat 94.5 0.35 1.2E-05 51.6 13.2 140 80-224 465-624 (1023)
78 1mhq_A ADP-ribosylation factor 94.5 0.44 1.5E-05 39.4 11.1 93 187-280 36-134 (148)
79 4ady_A RPN2, 26S proteasome re 94.3 0.81 2.8E-05 48.6 15.4 94 156-259 579-674 (963)
80 3nmw_A APC variant protein; AR 94.3 0.76 2.6E-05 42.9 13.9 170 83-259 99-290 (354)
81 2x1g_F Cadmus; transport prote 94.2 1.2 4.1E-05 46.2 16.2 133 80-221 476-618 (971)
82 1wa5_C Importin alpha RE-expor 94.0 1.6 5.5E-05 45.5 17.0 176 81-263 471-672 (960)
83 2x1g_F Cadmus; transport prote 93.8 1.1 3.9E-05 46.3 15.3 195 81-284 519-745 (971)
84 1te4_A Conserved protein MTH18 93.7 0.38 1.3E-05 37.6 9.1 86 70-179 44-129 (131)
85 2of3_A ZYG-9; multifunctional 93.7 2.9 0.0001 37.8 15.9 135 79-223 98-241 (266)
86 3ibv_A Exportin-T; karyopherin 93.5 2.6 8.8E-05 44.6 17.6 201 80-292 713-954 (980)
87 3nmz_A APC variant protein; pr 93.3 1.8 6.3E-05 41.9 14.8 148 70-219 288-451 (458)
88 3m1i_C Exportin-1; heat repeat 92.5 2.1 7.2E-05 45.1 15.1 102 79-185 464-571 (1049)
89 3zyq_A Hepatocyte growth facto 92.4 1.1 3.8E-05 39.3 10.9 98 185-282 41-141 (226)
90 1juq_A ADP-ribosylation factor 92.2 0.65 2.2E-05 39.2 8.8 95 187-282 48-148 (171)
91 3l6x_A Catenin delta-1; cateni 91.8 6.4 0.00022 39.4 16.8 183 68-255 48-264 (584)
92 3opb_A SWI5-dependent HO expre 91.1 4.4 0.00015 42.1 15.2 188 70-261 500-728 (778)
93 3oc3_A Helicase MOT1, MOT1; re 90.4 3.4 0.00011 41.9 12.9 157 61-258 167-325 (800)
94 1elk_A Target of MYB1; superhe 89.9 3.2 0.00011 34.4 10.7 95 186-280 50-151 (157)
95 1dvp_A HRS, hepatocyte growth 89.7 2.8 9.7E-05 36.4 10.8 96 186-281 39-137 (220)
96 3opb_A SWI5-dependent HO expre 89.4 10 0.00035 39.3 16.2 161 83-243 574-758 (778)
97 3gs3_A Symplekin, LD45768P; he 89.4 11 0.00039 33.6 15.9 122 152-279 13-144 (257)
98 4ady_A RPN2, 26S proteasome re 89.3 8.1 0.00028 41.0 15.5 128 120-260 589-718 (963)
99 3gjx_A Exportin-1; transport, 88.1 2.8 9.6E-05 45.0 11.3 140 80-224 491-650 (1073)
100 4gmo_A Putative uncharacterize 86.8 6 0.00021 39.8 12.5 174 69-247 35-245 (684)
101 3l6x_A Catenin delta-1; cateni 86.3 11 0.00036 37.8 13.8 144 70-218 310-476 (584)
102 1xm9_A Plakophilin 1; armadill 85.4 4.6 0.00016 38.3 10.3 93 165-261 13-116 (457)
103 3ibv_A Exportin-T; karyopherin 84.9 34 0.0012 36.0 17.5 151 90-242 420-588 (980)
104 3tt9_A Plakophilin-2; cell adh 83.4 11 0.00036 33.2 11.0 89 170-261 26-124 (233)
105 4hat_C Exportin-1; heat repeat 81.5 19 0.00064 38.3 13.9 167 110-279 452-646 (1023)
106 1vsy_5 Proteasome activator BL 78.7 14 0.00046 39.4 11.6 150 106-275 798-973 (997)
107 1upk_A MO25 protein; transfera 78.5 43 0.0015 31.2 17.5 138 72-244 168-313 (341)
108 2gs4_A Protein YCIF; stress pr 77.8 29 0.001 28.8 12.8 118 165-293 15-138 (166)
109 3o2t_A Symplekin; heat repeat, 77.2 17 0.00057 34.6 10.7 86 188-279 62-154 (386)
110 2gyq_A YCFI, putative structur 76.6 33 0.0011 28.8 12.4 118 165-293 22-144 (173)
111 3grl_A General vesicular trans 75.9 37 0.0013 34.5 13.3 171 65-259 18-193 (651)
112 3m1i_C Exportin-1; heat repeat 75.7 81 0.0028 32.9 18.6 169 79-260 60-262 (1049)
113 3rru_A TOM1L1 protein; structu 74.9 8 0.00027 31.9 6.9 93 186-278 50-149 (152)
114 3l9t_A Putative uncharacterize 73.1 50 0.0017 29.3 12.6 44 169-212 119-162 (240)
115 1vdy_A Hypothetical protein (R 72.1 6.7 0.00023 32.1 5.7 73 188-261 48-130 (140)
116 4gmo_A Putative uncharacterize 70.5 4.4 0.00015 40.9 5.2 72 188-262 34-106 (684)
117 2b6c_A Hypothetical protein EF 69.9 47 0.0016 28.3 11.1 117 74-210 95-212 (220)
118 1z9e_A PC4 and SFRS1 interacti 65.8 17 0.00057 29.3 6.6 41 244-286 64-104 (127)
119 3jxy_A Alkylpurine DNA glycosy 64.3 61 0.0021 27.9 10.7 119 75-213 102-222 (232)
120 1vsy_5 Proteasome activator BL 62.4 22 0.00074 37.8 8.7 129 79-215 813-963 (997)
121 1szi_A TIP47, mannose-6-phosph 57.9 39 0.0013 30.1 8.3 83 104-192 148-233 (247)
122 3dad_A FH1/FH2 domain-containi 57.8 1.2E+02 0.0041 28.2 17.0 159 65-265 115-290 (339)
123 3l9t_A Putative uncharacterize 56.4 1.1E+02 0.0036 27.1 12.6 62 186-255 100-162 (240)
124 3gs3_A Symplekin, LD45768P; he 56.0 1.1E+02 0.0037 27.1 16.2 137 70-219 17-174 (257)
125 3a6p_A Exportin-5; exportin-5, 55.5 2E+02 0.0069 30.8 14.9 174 79-263 58-278 (1204)
126 3o2t_A Symplekin; heat repeat, 54.6 1.4E+02 0.0049 28.1 14.1 125 83-219 40-184 (386)
127 2d9d_A BAG family molecular ch 50.9 67 0.0023 23.9 7.1 60 204-263 14-76 (89)
128 1sz9_A PCF11 protein; RNA poly 45.0 1.2E+02 0.004 24.3 9.7 93 184-280 37-137 (144)
129 3grl_A General vesicular trans 39.5 3.1E+02 0.011 27.7 13.3 115 68-184 122-242 (651)
130 1vdy_A Hypothetical protein (R 32.6 42 0.0014 27.2 4.0 42 67-108 48-89 (140)
131 2rg8_A Programmed cell death p 32.5 1.2E+02 0.0042 24.7 7.0 63 189-253 44-107 (165)
132 2f31_A Diaphanous protein homo 30.7 2.3E+02 0.0079 24.1 8.8 33 188-220 95-127 (233)
133 2bnx_A Diaphanous protein homo 28.2 1.8E+02 0.0063 26.9 8.2 31 189-219 100-130 (386)
134 4gt9_A TS, tsase, thymidylate 27.5 70 0.0024 27.8 4.8 48 229-283 175-223 (232)
135 3u0r_A Apoptosis inhibitor 5; 27.2 4.5E+02 0.015 25.7 15.7 161 70-246 31-191 (507)
136 1taf_A TFIID TBP associated fa 26.5 37 0.0013 24.2 2.3 44 210-253 4-47 (68)
137 1ug3_A EIF4GI, eukaryotic prot 23.2 2E+02 0.0069 26.0 7.3 29 190-218 46-74 (339)
138 2zu6_B Programmed cell death p 22.7 1.2E+02 0.004 27.5 5.6 30 189-218 37-66 (307)
139 1ho8_A Vacuolar ATP synthase s 21.4 1.5E+02 0.0052 28.8 6.2 57 81-138 418-476 (480)
140 1lsh_A Lipovitellin (LV-1N, LV 20.7 7.5E+02 0.026 26.0 12.5 168 67-259 390-574 (1056)
141 2db0_A 253AA long hypothetical 20.5 4.3E+02 0.015 23.0 16.4 133 108-253 31-165 (253)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=1e-20 Score=168.29 Aligned_cols=205 Identities=16% Similarity=0.216 Sum_probs=182.6
Q ss_pred ceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh-cCcchHHHHHHH
Q 022417 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM-KNPRSALCKTSI 130 (297)
Q Consensus 52 v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v-knLRS~Vsk~A~ 130 (297)
+++++++|+.+.=.| .+++.+.|.||..|.+|+..|..++..++++....+.+++..+.+.+ ++....|...|+
T Consensus 4 ~d~~~~~di~~~l~~-----~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~ 78 (242)
T 2qk2_A 4 MDLLDPVDILSKMPK-----DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAG 78 (242)
T ss_dssp HHTTSCBCCGGGSCT-----THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCCcccccccCCH-----HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 556667776332223 57888899999999999999999999888876677889999999999 599999999999
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHH
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA 210 (297)
.+++.|+..+|. .+.+. +..+++.|+.+.++.+..||+.|..||..++.+++...+++.|..+++|+|+.||..+.
T Consensus 79 ~~l~~la~~l~~-~~~~~---~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l 154 (242)
T 2qk2_A 79 KCLALLAKGLAK-RFSNY---ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETA 154 (242)
T ss_dssp HHHHHHHHHHGG-GGHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHH
Confidence 999999999999 77764 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 211 ISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 211 ~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+|..++...+++......+..+++.+..+++|.++++|..|..++..+..+++.
T Consensus 155 ~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 9999999998765433344789999999999999999999999999999999974
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-19 Score=160.74 Aligned_cols=207 Identities=16% Similarity=0.235 Sum_probs=183.7
Q ss_pred cccceeccCCCCCC-CCCccccHHHHHhccCCcCHHHHHHHHHHHHH-HHhhChhhh--hHHHHHHHHHHHHHh-cCcch
Q 022417 49 DAFIDYIPSENLKA-IPDPESMIPCLIEGLDSKDWTNVCESLNNARR-FALHHSSLL--EPNLEKVMAVVVKAM-KNPRS 123 (297)
Q Consensus 49 ~~~v~y~~~~eL~P-l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRr-La~~h~e~l--~~~L~~i~~~v~~~v-knLRS 123 (297)
+..++++++.|+-+ |+. .+.+.+.|.+|..|.+|+..|.. ++.-+|++. ...+.+++..+.+.+ ++...
T Consensus 2 ~~~~d~~~~~~i~~kl~~------~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~ 75 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK------DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI 75 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT------THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH
T ss_pred CchHhhcChhhhhhhCCh------hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH
Confidence 45688888888844 333 57788899999999999999999 887788877 567789999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCC-cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc------C-chhHHHHH
Q 022417 124 ALCKTSIMAASDIFSAFG-DKLLD-STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI------T-PLPLLQKL 194 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~-~~~md-~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~------s-~~kll~~L 194 (297)
.|...||.+++.|++.++ . .+. ++ ...+++.+|.+.++.+.-|++.+..||++++.++ + ...+++.|
T Consensus 76 ~v~~~A~~al~~la~~l~~~-~f~~~y---~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTP-GFSKDY---VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDI 151 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TSCHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-cccHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHH
Confidence 999999999999999999 7 787 65 7889999999999999999999999999999999 5 66899999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 195 KTYVKHTNPRIRAKAAISISICVTKMGL--EGMKELGL-VSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 195 ~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~~~~-~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
..+++|||+.+|..+..+|..++...+. ..+.. .+ +.+++.+.++++|.++++|..|..++..+..+++++
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 9999999999999999999999998875 33323 37 899999999999999999999999999999999864
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-15 Score=138.64 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=155.8
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLE-----PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-----~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+-+.|.|++|..|.+|+..++.+....+.... ..+..+...+.+.++|.+.+|...|+.++..++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44789999999999999999999876654332 2356677788899999999999999999999998877622111
Q ss_pred c--hhhHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhcCc-hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 T--SDALDNLVLQLLMK-ASQDKKFVCEEADRALNTMVESITP-LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~--~~~ld~ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s~-~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
. ...+..+++.|+.| .++++..+++.+..++..++..+.+ ..++..|..+.+||||.||..+..||..++..+|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 1 12367788999999 4789999999999999999888764 678888999999999999999999999999999976
Q ss_pred hhh-hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMK-ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~-~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+. ...+..+++.+.++++|++++||..|..++..+|..+|.
T Consensus 174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 543 233678889999999999999999999999999998874
No 4
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.56 E-value=6.7e-13 Score=122.02 Aligned_cols=201 Identities=17% Similarity=0.204 Sum_probs=165.3
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
.+...|-+.||..+++|+..|-......++.+...+.-++.-+.--+.+-..+|...++..+..+|..++.....-...+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 66677788999999999999999988888777666655555554444577889999999999999998876321111223
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
...+++.|+.|.|+.+.=+|+.+...|..|..-++|.++++.|..|.+|||.++|..+..++..+++..|... .
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------L 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------G
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------c
Confidence 5788999999999999999999999999999889999999999999999999999999999999999999762 3
Q ss_pred HHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 232 SLV---QVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 232 ~ll---~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
+.+ +.++++++|++++||++|-.++..+|...|+ ..-.++. .|++..
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd-------~v~k~lg-~L~~~~ 253 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD-------QMWKAAG-RMADKD 253 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT-------HHHHHHC-CCCHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-------HHHHHHh-cCCHHH
Confidence 345 9999999999999999999999999988863 3334553 575543
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.53 E-value=6.4e-14 Score=148.36 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=159.2
Q ss_pred cHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..+++.|++. +|+.++.||..+.+|+...|+.+...|.++++.|...|++++..|++.|..|+..+|..++|.++++
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~ 213 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER 213 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh
Confidence 466777777544 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c----------hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 148 T----------SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 148 ~----------~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
+ ++.+++++ +....++||.+.-..+|..| +|.|.++++.++..+.+++|..+.|++
T Consensus 214 ~~~~~~~~~~~p~~~~~~~-----~~l~~~tfv~~v~~~~l~~~---------~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 214 FIPSLIQCIADPTEVPETV-----HLLGATTFVAEVTPATLSIM---------VPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp GHHHHHHHHHCTTHHHHHH-----HHHTTCCCCSCCCHHHHHHH---------HHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcChhhhHHHH-----HHhhcCeeEeeecchhHHHH---------HHHHHhhhccCcchhheeeEEEEcchh
Confidence 7 44455555 44567899999999999999 999999999999999999999999999
Q ss_pred HhhCchhhhh-ccHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 218 TKMGLEGMKE-LGLVSLVQVAAGL-LNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 218 ~~~g~~~l~~-~~~~~ll~~~a~~-l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+.+..+.... | +.++++.+.+- =+=++||+|+.+.+++..|.++.+.
T Consensus 280 ~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 280 KLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999877543 5 67777776663 3456899999999999999998775
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.97 E-value=1.2e-08 Score=99.07 Aligned_cols=178 Identities=11% Similarity=0.121 Sum_probs=138.4
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..+...+++.+|..+..++..+..++..- ++.+ ...+++.+...+++.-..|-..|+.+++.++..+|. .+
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~--- 476 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EW--- 476 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HH---
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hh---
Confidence 444555667889999999988888888643 3322 245777888888998889999999999999999887 21
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch----hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL----PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~----kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
.++.+++.|+.-..+.+.-+|..+-.++..++..+.+. .+++.|...+++.++.||..++..|..++..+|...
T Consensus 477 --~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 477 --AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp --HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred --HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 24556665554334577889999999999998887653 678888888899999999999999999998888542
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
+ .+.+++.+.++++|.++++|.+|..++..+.
T Consensus 555 ~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 555 L----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred h----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 2 2677888888899999999999999987654
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.80 E-value=1.1e-07 Score=92.30 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=143.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..++..+++++|..+..+...+-+++...+.... ..++.+++.+...+++....|-+.|+.+++.++..+|. ..
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-- 359 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-- 359 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH--
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH--
Confidence 33444555666777777777777777665433211 34667777888888998889999999999999999987 21
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
..+.+++.|+.-..+.+..|+..+-.+|..++..+.. ..+++.|....++++..+|..++.++..+...+|.+
T Consensus 360 ---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 360 ---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp ---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred ---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 1344555555555677889999999999999988774 457888888889999999999999999999988864
Q ss_pred hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+ .+.+++.+..++.|.++++|..|-.++..+...++.
T Consensus 437 ~~----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 437 FF----DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp GC----CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 22 367888899999999999999999999888887764
No 8
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.66 E-value=2e-06 Score=80.68 Aligned_cols=195 Identities=17% Similarity=0.156 Sum_probs=147.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHc------CC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAF------GD 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l------~~ 142 (297)
+..+...+.+.|+..+..++..+..++..+++.+.+.+. .++..+...+++.-..|...|+..++.+.... ..
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444567889999999999999999999998888888 88888888888888899999999888888753 00
Q ss_pred -----------CCCCcchhhHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCC
Q 022417 143 -----------KLLDSTSDALDNLVLQLLMKASQ-------DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHT 201 (297)
Q Consensus 143 -----------~~md~~~~~ld~ll~~LL~Ka~~-------sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hK 201 (297)
....-....+..+++.|+....+ ++.-+|..|..+|..++..+.. ..+++.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 01111011245667666655432 2346899999999999998872 24555666788899
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+..+|..+...|..+.+..+.+.+.. .+..+++.+..+++|.+|.+|.+|-.++..+-..++.
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999998888887444222322 3688999999999999999999999999998887765
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.65 E-value=8e-07 Score=75.51 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=133.0
Q ss_pred ccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 66 PESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 66 pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
++.....+...|.++|+..+..|+..|+.|+.+.++.....+ ..+++.++..+++.-..|...|+.+++.|...-.. .
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-Q 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-H
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-H
Confidence 334445677788999999999999999999987766443322 24778888889988889999999999998732110 0
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.+... -...++.|+.-..+.+.-+++.|-.+|..|+.+... ...++.|...+++.++.+|..++..|.+++
T Consensus 89 ~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 89 IQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH--HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00000 001334444444567788999999999999754322 346888888899999999999999999998
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
..-. +......-...++.+.+++.+.++++|+.|-.++..|
T Consensus 167 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 167 SGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp TSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7421 2111111234667778888999999999999888765
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.64 E-value=1.1e-06 Score=89.31 Aligned_cols=191 Identities=9% Similarity=0.122 Sum_probs=147.9
Q ss_pred cHHHHHhccCCc--CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc---------------chHHHHHHHH
Q 022417 69 MIPCLIEGLDSK--DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP---------------RSALCKTSIM 131 (297)
Q Consensus 69 ~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL---------------RS~Vsk~A~~ 131 (297)
.+..++..+++. +|..+..++..+..++...++.+.+.+..+++.+...+.+. ...+-..++.
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 455666667643 49999999999999999888777777777777776666532 2345568999
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHH
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKK-FVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPR 204 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~-FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~ 204 (297)
+++.++..+|. .+.+. ++.++..++.-..+.+. .+++.+-.++..++..... ..+++.|..+++++++.
T Consensus 579 ~l~~l~~~~~~-~~~~~---~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 579 VLAAVIRKSPS-SVEPV---ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHCGG-GTGGG---HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHhhh-hhHHH---HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 99999999998 67665 66676666655445444 7899999999999877643 35777787888889999
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhcc
Q 022417 205 IRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL--PEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 205 VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~--pE~R~~aRk~l~~L~~~~~~ 265 (297)
+|..+..++..+++..|. .+..+ .+.+++.+.+.+.|.+ +++|..+-.++..+-..++.
T Consensus 655 vr~~a~~~l~~l~~~~~~-~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEE-DFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHHTGG-GGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhch-hccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 999999999999998883 33333 6788888888888865 99999999999888887764
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.63 E-value=1.7e-06 Score=89.23 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=141.9
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
+..+.+.+.+.+|..|..|+..+..++...++.+.+.+..+++.+...+++....|-.+|+.+++.++..++......
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-- 438 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-- 438 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH--
Confidence 334445668899999999999999999988888889999999999999999999999999999999999887634443
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.++.++..|+....+++.-+++.|..||..+++++.+ ..+++.|....+..+......+...+..+++.+|..
T Consensus 439 -~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 439 -YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp -THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 4788888888877788899999999999999988754 356666665555444455555667777777777643
Q ss_pred hhhhccHHHHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAA---GLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a---~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-....-.+.+++.+. ..+.|.+++.| .+-+++..+-..++.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~ 561 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS 561 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhH
Confidence 211111345555444 45678888886 444555555555543
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.63 E-value=9e-07 Score=91.31 Aligned_cols=191 Identities=12% Similarity=0.068 Sum_probs=149.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--cCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA--FGDKLL 145 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~--l~~~~m 145 (297)
..+..++..+.++|+..+..++..+-+|+.++|+.+.+.++.++..+.+.+++.-..|...|+.++..+++. +++ .+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~-~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD-VL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH-HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 345566667788999999999999999999999999999999999999999998889999999888777642 111 22
Q ss_pred CcchhhHHHHHHHHHHHh-----------cc-----------ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccC
Q 022417 146 DSTSDALDNLVLQLLMKA-----------SQ-----------DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKH 200 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka-----------~~-----------sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~h 200 (297)
.+ .+..+++.|+... .+ +.--++..|..+|+.++...+. ..+++.|....++
T Consensus 294 ~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH 370 (852)
T ss_dssp TT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC
T ss_pred HH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 33 3677888887775 23 2334788999999999988753 2466666677889
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.++.+|..++..|..+.+..+ +.+. ..++.+++.+..++.|.++.+|..+-.++..+-..++
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~-~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCM-QGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTH-HHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988887655 2333 2378999999999999999999988888776665543
No 13
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.59 E-value=3.1e-06 Score=86.17 Aligned_cols=188 Identities=15% Similarity=0.128 Sum_probs=138.9
Q ss_pred HHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN--PRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vkn--LRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..++..|.+. +|..+..++..+..|+....+.+.+.+.+++..+...+++ ....+...++.+++++...+|. .+.
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-~~~ 729 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFK 729 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-GGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch-hHH
Confidence 34444555555 8999999999999999876666778889999999998887 4456888999999999999998 676
Q ss_pred cchhhHHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHhcCc----------------hhHHHHHHhhcc
Q 022417 147 STSDALDNLVLQLLMKASQD-----------KKFVCEEADRALNTMVESITP----------------LPLLQKLKTYVK 199 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~s-----------n~FI~e~A~~AL~~Mv~~~s~----------------~kll~~L~~~~~ 199 (297)
+. ++.+++.|+.-...+ ..-+++.+-.++..+++.+.+ ..+++.|.....
T Consensus 730 ~~---l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 806 (876)
T 1qgr_A 730 KY---LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG 806 (876)
T ss_dssp GG---HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT
T ss_pred HH---HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 64 777776655433222 126888899999988877532 123444434445
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHH
Q 022417 200 HT--NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG-LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 200 hK--n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~-~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+. +..||..++.+|..+++.+|.+.+..+-.+.+++.+.. ++.|.++++|..|..++..+.+
T Consensus 807 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 807 DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 65 89999999999999999998634444423455555555 8899999999999999887764
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.57 E-value=4.4e-06 Score=89.49 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=153.4
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRS--ALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS--~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
+...+.+++|..+..++..+.+++...++.+.+.+..+++.+...+++--. .|.-+|+.+++.++..+|...+.+
T Consensus 439 l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~--- 515 (1230)
T 1u6g_C 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP--- 515 (1230)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH---
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh---
Confidence 344588999999999999999999988888888999999999999998754 788899999999998887744554
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------------hhHHHHHHhhc--cCCCHHHHHHHHHHHHH
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------------LPLLQKLKTYV--KHTNPRIRAKAAISISI 215 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------------~kll~~L~~~~--~hKn~~VR~~aA~~L~~ 215 (297)
.++.+++.|+....+.+.-++.++-.++..+++.+.+ ..+++.|...+ .+.++.||..++.++..
T Consensus 516 ~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~ 595 (1230)
T 1u6g_C 516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595 (1230)
T ss_dssp HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3778888888877888888888888999999987654 46888887766 67899999999999999
Q ss_pred HHHhhCchhh------hh--------------------------------ccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGM------KE--------------------------------LGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 216 ~v~~~g~~~l------~~--------------------------------~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
++...|..-. .. .....+++.+..++.|.++.+|..+=.++.
T Consensus 596 L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~ 675 (1230)
T 1u6g_C 596 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675 (1230)
T ss_dssp HHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988774310 00 002566777777888999999999999998
Q ss_pred HHHHHhcc
Q 022417 258 SMYNAFTE 265 (297)
Q Consensus 258 ~L~~~~~~ 265 (297)
.+...++.
T Consensus 676 ~l~~~~~~ 683 (1230)
T 1u6g_C 676 ILIKNYSD 683 (1230)
T ss_dssp HHHHHCCT
T ss_pred HHHhcccc
Confidence 88877753
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.56 E-value=2.8e-06 Score=86.30 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=152.1
Q ss_pred cHHHHHhccCCcCH-HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDW-TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW-~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..+++.+| ..+..++..+..++....+.+.+.+..+++.+...+++-...+...|+.++++++..+|. .+.+
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~ 676 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRR 676 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHH
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-hccc
Confidence 34455566666677 778888989999998777778888999999999999877788999999999999999997 6665
Q ss_pred chhhHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccCCC-----------HHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDK--KFVCEEADRALNTMVESITPL------PLLQKLKTYVKHTN-----------PRIRAK 208 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn--~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~hKn-----------~~VR~~ 208 (297)
. ++.++..|+....+.+ .-+++.+-.++..|+.++... .+++.|...+.+.. ..+|..
T Consensus 677 ~---~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~ 753 (861)
T 2bpt_A 677 Y---SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEA 753 (861)
T ss_dssp H---HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 4 7777777776665544 779999999999999887542 56777766655432 568999
Q ss_pred HHHHHHHHHHhhCc--hhhhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHh-cc
Q 022417 209 AAISISICVTKMGL--EGMKELGLVSLVQVAAGLLNDR----LPEAREAARSMVNSMYNAF-TE 265 (297)
Q Consensus 209 aA~~L~~~v~~~g~--~~l~~~~~~~ll~~~a~~l~D~----~pE~R~~aRk~l~~L~~~~-~~ 265 (297)
+...+..++..+|. ..+..+ +..+++.+.+++.|. +.++|..|-.++..|-.++ +.
T Consensus 754 ~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 754 VLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999988873 223333 688888888888885 8999999999999999998 54
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.52 E-value=1.1e-05 Score=82.02 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=149.5
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC-------
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG------- 141 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~------- 141 (297)
+..+...+.+.||..+..++..+-+++..+++.+.+.+. .++..+...+.+.-..|...|+..+..+.....
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 298 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhc
Confidence 455556677889999999999999999999999999898 999999998888888899999988888876531
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCC
Q 022417 142 ----------DKLLDSTSDALDNLVLQLLMKAS-------QDKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHT 201 (297)
Q Consensus 142 ----------~~~md~~~~~ld~ll~~LL~Ka~-------~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hK 201 (297)
+....-....+..+++.++.... ++.--+|..|..+|..++..+.. ..+++.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~ 378 (876)
T 1qgr_A 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS
T ss_pred cccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC
Confidence 00111101124667777776654 23456889999999999988763 35666666788899
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
++.+|..++..+..+.+..+++.+..+ +..+++.+..+++|.++.+|..|-.++..+-..++.
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 999999999888888776553333332 678899999999999999999999888888777654
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.51 E-value=4.9e-06 Score=71.01 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=76.7
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+......+..++..|++.||..+..++..|.++.. .+.+..+...+++....|-..|+.+++.+- .
T Consensus 14 ~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~ 79 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D 79 (211)
T ss_dssp --CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----C
T ss_pred hhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C
Confidence 34556778889999999999999999877776532 133445555666666677777777776642 2
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+. .++ .|+.-..+.+..++..|-.+|..+ .....++.|...+.+.++.||..++..|..
T Consensus 80 ----~~--~~~----~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 ----ER--AVE----PLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp ----GG--GHH----HHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----HH--HHH----HHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 122 222222455666777666666655 234466666666677777777766665544
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.50 E-value=1.1e-05 Score=86.30 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=151.3
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhC-------------------hhhhhHHHHHHHHHHHHHhcCcchHHHHHHH
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHH-------------------SSLLEPNLEKVMAVVVKAMKNPRSALCKTSI 130 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h-------------------~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~ 130 (297)
+..++..+.+.++..+..++..+..+.... .+.+...++.++..+.+.+++--..+-..+|
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 344555666778888889998888877532 1344567788888888889987777778899
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCC
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDK--KFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHT 201 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn--~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hK 201 (297)
.+++++...++. .+.++ ++.++..++.-..+.+ ..++.++-.++..++....+. .+++.|..+.+++
T Consensus 456 ~~L~~l~~~~~~-~l~~~---l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~ 531 (1230)
T 1u6g_C 456 NMLTELVNVLPG-ALTQH---IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531 (1230)
T ss_dssp HHHHHHHHHSTT-TTGGG---HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS
T ss_pred HHHHHHHHHchh-hhHHH---HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc
Confidence 999999999776 67654 7888888877776654 489999999999998876654 5778888888999
Q ss_pred CHHHHHHHHHHHHHHHHhhCc------hhhhhccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 202 NPRIRAKAAISISICVTKMGL------EGMKELGLVSLVQVAAGLL--NDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~------~~l~~~~~~~ll~~~a~~l--~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+..||..+...+..+++.+|. ..+..+ .+.+++.+...+ .|.++++|..+-.++..|-..++..
T Consensus 532 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 532 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPY-IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH-HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred chHHHHHHHHHHHHHHHHhcCcccccccchHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 999999888899999988875 122223 678888888888 8999999999999999998887654
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.49 E-value=9.9e-06 Score=71.15 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=124.3
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..+...+ ++.+-..+..|++.+..|+..-...+.+.+..+++.|...+++....|...|+.++..++...+
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----
Confidence 3455556667 4889999999999999999866667788899999999999999999999999999999986431
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
++.++..|+.-..+.|..+++.+-..|..++....+. .+++.|...+.+.++.||..+..++..+..
T Consensus 131 -----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 131 -----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 4567766666566788999999999999988776432 688888889999999999999999999999
Q ss_pred hhCchhhhh
Q 022417 219 KMGLEGMKE 227 (297)
Q Consensus 219 ~~g~~~l~~ 227 (297)
.+|.+.+..
T Consensus 206 ~vg~~~~~~ 214 (242)
T 2qk2_A 206 LMGDKAVTP 214 (242)
T ss_dssp HHCHHHHGG
T ss_pred HcCHHHHHH
Confidence 999654443
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.48 E-value=6e-06 Score=71.12 Aligned_cols=189 Identities=19% Similarity=0.147 Sum_probs=135.2
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.+++.+..|+..|+.|+..+++...... ..+++.++..+++....|...|+.+++.|...-.. ..+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-HHHH
Confidence 467888999999999999999999999987774433322 24778888999988899999999999988742100 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.. -...+..|+.-..+++.-+++.|-.+|..++...... ..++.|...+++.++.+|..++..|.++....
T Consensus 82 ~~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HH--HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 00 0023444444444677889999999999997543222 46888888999999999999999999988642
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
. .......-...++.+..++.+.++++|..+-.++..|-.
T Consensus 160 ~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 160 D-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 2 111111124467778888889999999998888776643
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.47 E-value=4.2e-06 Score=72.09 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=138.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.+...+..++..|..|+.++++.-...+ ..+++.++..+++....|...|+.+++.|+..-.. ..+.
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 123 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKA 123 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 467788889999999999999999999987665433322 24677888889988899999999999999842111 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.. -...+..|+.-..+++.-++..+-.+|..|+...... ..++.|...+.+.++.+|..++..|.+++..
T Consensus 124 ~~--~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 200 (252)
T 4hxt_A 124 IV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG- 200 (252)
T ss_dssp HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-
T ss_pred HH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-
Confidence 00 0123444444445677889999999999887653222 3788898999999999999999999998862
Q ss_pred Cchhhh-hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 221 GLEGMK-ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 221 g~~~l~-~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+... ...-..+++.+.+++.+.++++|..|-.++..|......
T Consensus 201 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 201 -PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp -BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 22211 111234677788889999999999999999988775544
No 22
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.43 E-value=1.1e-05 Score=68.36 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
......+++.|++.||..+..|+..|.++.. ...+..+...+++....|-+.|+.+++.+ +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~---- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----GD---- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----
Confidence 3556788899999999999999887776532 13345566677788888888888888765 32
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
+. .++.++ .-..+.+..++..|-.+|..+ .....++.|...+++.++.||..++..|..+ |.
T Consensus 75 ~~--~~~~L~----~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---- 136 (201)
T 3ltj_A 75 ER--AVEPLI----KALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---- 136 (201)
T ss_dssp GG--GHHHHH----HHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TC----
T ss_pred HH--HHHHHH----HHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----
Confidence 11 233232 223467788888888888776 3446778888888888899988887766543 22
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...++.+..++.|.++++|..|-.++..+
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 23345556667777777777777666654
No 23
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.43 E-value=1.7e-05 Score=67.61 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=116.6
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..++..|.++.. .+.+..+...+++.-..|-..|+.+++.+ +. +
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~----~ 111 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD----E 111 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----G
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H
Confidence 567788888899999999999887776632 23445666778888889999999999876 33 1
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
. .++.+ +.-..+.+..|+..|-.+|..+ .....++.|...+++.++.||..++..|..+ |
T Consensus 112 ~--~~~~L----~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~------ 171 (211)
T 3ltm_A 112 R--AVEPL----IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G------ 171 (211)
T ss_dssp G--GHHHH----HHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C------
T ss_pred H--HHHHH----HHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------
Confidence 1 23333 2323578899999999999887 4567899999999999999999888766654 3
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
-+..++.+..+++|.++++|..|..++..+...++
T Consensus 172 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 172 --GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 25667778888899999999999999887766543
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.36 E-value=3.2e-06 Score=73.59 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=133.1
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.++..+..++..|..|+..+++.-...+. ..++.++..+++....|.+.|+.+++.|...-.. ..+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 133 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQA 133 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch-HHHH
Confidence 3556778888999999999999999999876654433222 3778889999998899999999999998643211 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
. .-...++.|+.-..+.+.-+++.|-.+|..++.+... ..+++.|...+++.++.+|..++..|.+++..
T Consensus 134 ~--~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 210 (252)
T 4db8_A 134 V--IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 210 (252)
T ss_dssp H--HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-
T ss_pred H--HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-
Confidence 0 0012444554444567788999999999988764322 34678888888899999999999999999842
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+.+......-...++.+..++.++++++|..|-.++..|
T Consensus 211 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 111111111234677788899999999999998887654
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.36 E-value=2.5e-05 Score=73.16 Aligned_cols=195 Identities=11% Similarity=0.056 Sum_probs=143.4
Q ss_pred ccHHHHHhccCCc--CHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHcCC
Q 022417 68 SMIPCLIEGLDSK--DWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l~~ 142 (297)
..+..++..+.+. ||..+..|+..++.++... ++.+.+.+..++..+...+++. ...|-+.|+.+++.+...++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788788 9999999999999999865 7778888899999999999988 678888999999987654443
Q ss_pred CCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCc------h-hHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITP------L-PLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~------~-kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
.++.+ .+...+...|.+. .+...-++..+-.+|..++..... . .+++.+....++.+..||..+..++.
T Consensus 208 -~~~~~--~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 208 -NFDKE--SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp -HHTSH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred -hhhhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33321 1223323333333 446678999999999999877643 2 67787777888999999999999999
Q ss_pred HHHHhh-------C------------chhhhhccHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHhcc
Q 022417 215 ICVTKM-------G------------LEGMKELGLVSLVQVAAGLLND-------RLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 215 ~~v~~~-------g------------~~~l~~~~~~~ll~~~a~~l~D-------~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+++.. + ...+.......+++.+.+.+.+ .++.+|..|-.++..|-..+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 988753 0 0001111246777777777743 4578999999999999888873
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.4e-05 Score=69.23 Aligned_cols=157 Identities=11% Similarity=0.133 Sum_probs=128.9
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhCh-hhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFALHHS-SLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~-e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
..+..+...+ ++.+-..+..|++.|..|+..-. ..+. +....+++.|+..+++-+..|...|..++-.++..... .
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~ 138 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-L 138 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-T
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-c
Confidence 4466666777 67888889999999999998665 5677 88999999999999999999999999999999998755 2
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----------chhHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----------PLPLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----------~~kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
.... .++.++..|+.-....|.-+++.+-.+|...+.... +..+++.|..++.+.++.||..+..++.
T Consensus 139 ~~~~--~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 139 ASSG--RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CTTC--TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2210 156666666654455688999999999999998876 2578888899999999999999999999
Q ss_pred HHHHhhCchhhhh
Q 022417 215 ICVTKMGLEGMKE 227 (297)
Q Consensus 215 ~~v~~~g~~~l~~ 227 (297)
.+...+|.+.+..
T Consensus 217 ~i~~~vG~~~~~p 229 (249)
T 2qk1_A 217 ILIKIFGMNTFVK 229 (249)
T ss_dssp HHHHHHCSGGGHH
T ss_pred HHHHHhCHHHHHH
Confidence 9999999765544
No 27
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.36 E-value=5.5e-06 Score=72.10 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=136.0
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
..+.......++..|.++|.+.+..|+..|+++...+++.....+ ..+++.++..+++....|...|+.+++.|...-.
T Consensus 7 ~~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CCCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 345555678999999999999999999999988776444322211 2467888889998889999999999998874211
Q ss_pred CCCCCcchhhHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHH
Q 022417 142 DKLLDSTSDALD--NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 142 ~~~md~~~~~ld--~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~ 212 (297)
. ..+ .+- ..++.|+.-..+.+.-+++.|-.+|..+..+-... ..++.|...+++.++.+|..++..
T Consensus 87 ~-~~~----~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 87 E-QIQ----AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp H-HHH----HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred H-HHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 000 111 14455555445678899999999999886553322 378888889999999999999999
Q ss_pred HHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 213 ISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
|.++...-. +......-..+++.+..++.+.++++|..|=.++..|-
T Consensus 162 L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 162 LSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTSCH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCh-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 999886321 11111111345666777888999999998887777664
No 28
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.34 E-value=4e-05 Score=64.73 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=117.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..++..|.++.. + +.+..+...+++.-..|-..|+.+++.+ +. +
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~----~ 106 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD--E--------RAVEPLIKALKDEDGWVRQSAAVALGQI----GD----E 106 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----G
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--------HHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H
Confidence 567788888999999999999877766531 1 3455666778888889999999999875 33 1
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
. .++.+ +.-..+.+..|+..|-.+|..+ .....++.|...+.+.++.||..++..|..+ |
T Consensus 107 ~--~~~~L----~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~------ 166 (201)
T 3ltj_A 107 R--AVEPL----IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G------ 166 (201)
T ss_dssp G--GHHHH----HHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C------
T ss_pred H--HHHHH----HHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------
Confidence 1 23333 2233577889999999999887 3467889999999999999999988776655 3
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+..++.+..++.|.++++|..|..++..+.+
T Consensus 167 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 167 --GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp --SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred --chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 35567778888899999999999998876543
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.31 E-value=8.6e-06 Score=76.39 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=138.7
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
...+..++..+.+.|+..+..++..|+.|+.+.++...... ..+++.++..+++.-..|...|+.+++.|...... ..
T Consensus 191 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~ 269 (450)
T 2jdq_A 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI-QT 269 (450)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH-HH
Confidence 45677888889999999999999999999987665433222 24677788888888889999999999998753211 00
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.. .++ .++..|+.-..+.+.-++..|-.+|..++..... ..+++.|...+++.++.||..++..|.+++
T Consensus 270 ~~---~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 270 QV---ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HH---HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HH---HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00 000 2444444444557788999999999988764321 357788888888899999999999999998
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.....+.+...--..+++.+..++.+.++++|..+-.++..+-...
T Consensus 347 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 7644333222112346777888899999999999988887776543
No 30
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.31 E-value=2.1e-05 Score=69.92 Aligned_cols=129 Identities=11% Similarity=0.014 Sum_probs=93.9
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..|+..|.++. . .+++..+...+++.-..|-..|+.+++.+ |. .-.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~-~~~- 86 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--G--------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KI-CKK- 86 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CC-CTT-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--C--------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----cc-ccc-
Confidence 35778899999999999999998887764 1 34566677788888888888888888765 32 111
Q ss_pred chhhHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMK-ASQDKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 148 ~~~~ld~ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
.++.++..|... ..+.+..++..+-.+|..+....+ ...+++.|...+++.++.||..++..|..
T Consensus 87 ---~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 87 ---CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp ---THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred ---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 244444443322 246778899999999988875433 45688888888899999999888876654
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.28 E-value=9.2e-06 Score=79.16 Aligned_cols=193 Identities=11% Similarity=0.088 Sum_probs=139.6
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|.+.|+..+..++..|..|+...++.....+. .+++.++..+++....|...|+.+++.|...-.. ...
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 335 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-QTQ 335 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-HHH
Confidence 45778888889999999999999999999877765544333 5778888889988889999999999988742111 000
Q ss_pred cchhhH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDAL-DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~l-d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
. .+ ..+++.|+.-..+.+.-++..|-.+|..++..... ..+++.|...+.+.++.||..++..|.+++.
T Consensus 336 ~---~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 336 V---VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp H---HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H---HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0 01 12344444444556788999999999998764322 2467788888888999999999999999988
Q ss_pred hhCc--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 219 KMGL--EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 219 ~~g~--~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..+. +......-..+++.+..++.+.++++|..+-.++..|.....
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 6443 222221123366777778889999999999888887766544
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.22 E-value=3.4e-05 Score=72.24 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=132.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKN-PRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vkn-LRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|++.++..+..|+..|..|+...++.-...+ ..++..++..+++ .-..|.+.|+.+++.|+...+. ...
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 186 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP-PPE 186 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSS-CCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCC-CCC
Confidence 466777888999999999999999999987665332222 2467777888884 7789999999999999965322 111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.. .+..+++.|+.-..+++.-++..+-.+|..++.+... ..+++.|...+.+.++.||..++..|.++...
T Consensus 187 ~~--~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 187 FA--KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp GG--GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HH--HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 11 1234455555545567788999999999988765432 24788888888999999999999999988764
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-+. .....--..+++.+..++.+.++++|..|=.++..+
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 221 110100124677788889999999998877666554
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.22 E-value=1.4e-05 Score=77.78 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=132.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|.+.+|..+..++..|..|+..+++.....+ ..+++.+...+.+....|.+.|+.+++.|...-.. .+.
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~ 377 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-QIQ 377 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHH
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHH
Confidence 3466778888899999999999999999986665433322 25778888999999999999999999998752111 100
Q ss_pred cchhhH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc----------hhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 147 STSDAL-DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP----------LPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 147 ~~~~~l-d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~----------~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
. .+ ..+++.|+.-..+.+.-++..|-.+|..|+...++ ..+++.|...+.+.++.||..++..|.+
T Consensus 378 ~---~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 378 A---VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454 (530)
T ss_dssp H---HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred H---HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0 00 01222332222345678999999999999887654 2378888888889999999999999999
Q ss_pred HHHhhCchh---------hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEG---------MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 216 ~v~~~g~~~---------l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..-.... ... +.-.-.++.+..+.++.++++++.|..++..++.
T Consensus 455 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 455 ILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 887543210 000 1011235566778899999999988877665544
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.09 E-value=2.6e-05 Score=75.67 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=137.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC---
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD--- 142 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~--- 142 (297)
...+..++..|.+.||..+..++..|..|+.+.++.....+ ..+++.++..+++....|...|+.+++.|...-..
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 34577888888999999999999999999986665433222 24778888889998899999999999999852111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQD-KKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
..++. .+++.|+.-..+. +.-++..|-.+|..++..... ..+++.|...+.+.++.+|..++..|.
T Consensus 323 ~~~~~------~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 323 CIIDH------QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp HHHTT------THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHh------hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00111 1233333333355 788999999999998764221 245677877777789999999999999
Q ss_pred HHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 215 ICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 215 ~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+++...+.+......-..+++.+..++.+.+++++..+-.++..|......
T Consensus 397 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 998764333322221234577778889999999999998888888665543
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.01 E-value=7.7e-05 Score=72.33 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=130.1
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNP-RSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknL-RS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|.+.+|..+..++..|..|+.+.++.....+ ..+++.+...+++. ...|.++||.+++.|... .. +
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~--~~--~ 362 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NK--D 362 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS--CH--H
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC--CH--H
Confidence 466778888999999999999999999986665443322 34677778888888 899999999999999852 20 1
Q ss_pred cchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 147 STSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 147 ~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.....++ .+++.|+.-..+...-++..|-.||..++.+.++. .+++.|...+.+.++.++..++..|.+++
T Consensus 363 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000000 22233333333456779999999999998875432 46777888889999999999999999998
Q ss_pred HhhCchh---------hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 218 TKMGLEG---------MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 218 ~~~g~~~---------l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
..-.... ... ..-...++.+..+..+.++++++.|..++..++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 443 KVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 7543211 111 001123445566788999999999988776554
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.00 E-value=0.00026 Score=62.80 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=113.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVV-KAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~-~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|++.||..+..|+..|.++.. .++ .+..++..+. ...++.-..|-..|+.+++.+......
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---- 124 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---- 124 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----
Confidence 456677788889999999988877766532 112 1333444444 245677788889999999998754322
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
..+..+..|+....+.+..++..|-.+|..+- ....++.|...+++.++.||..++..|..+ |.
T Consensus 125 ----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---- 188 (280)
T 1oyz_A 125 ----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININ----KY---- 188 (280)
T ss_dssp ----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TC----
T ss_pred ----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh----cc----
Confidence 12345555555556788899999988887653 345788888888899999999888777543 21
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-+..++.+..++.|.++++|..+-.++..+
T Consensus 189 --~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 189 --DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp --CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred --CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 1245667777888899999998887776653
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.88 E-value=0.00043 Score=68.96 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=126.7
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCcchh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDSTSD 150 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~~~~ 150 (297)
.+...|.+.++..|..|...+.++...+|+.+.. ..++..+...+.+.-..|..+|+.+++++...-... .++-
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l--- 199 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL--- 199 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC---
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc---
Confidence 4566778889999999999999998888886643 467788888888888899999999999987653321 1221
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-chh
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG-LEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~~ 224 (297)
....+..|+....+.+.|.+-.. |..+...++. ..+++.|...++|.|+.|+..++.++..+...++ .+.
T Consensus 200 -~~~~~~~Ll~~l~~~~~~~q~~i---l~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 200 -NPQNINKLLTALNECTEWGQIFI---LDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHH---HHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred -cHHHHHHHHHcCCCCCchHHHHH---HHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 34456666666566778876543 3444444432 4678888888999999999999998887765441 111
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
....-..++...+..+ .++++++|+.|=+.+..+-..++
T Consensus 276 ~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 276 YYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp SHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhCh
Confidence 1111123444444444 45899999999999988876544
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.88 E-value=0.00024 Score=70.80 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=124.0
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..+..+-+.|++.|=.++.+++..+-.+...+.+ .......+++.+.+..-.+-|.+-.+++.++.. +
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~------~ 80 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-----VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS------Q 80 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH------S
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc------C
Confidence 45678888889999888888888766665543433 223344566678999999999999999888764 1
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++ .+.-++..|.+-..+.|.+++..|-++|..+...--...+++.|...+.|.++.||++++.++..+... +++.+.
T Consensus 81 ~e--~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~ 157 (591)
T 2vgl_B 81 PD--MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE 157 (591)
T ss_dssp HH--HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH
T ss_pred ch--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc
Confidence 21 222233333333456899999877555544421111235667788899999999999999999999984 333221
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
-..+++.+..+++|.+|.+|..|=.++..+..
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 14688999999999999999998777766543
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.66 E-value=0.0007 Score=62.40 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=126.2
Q ss_pred ccccHHHHHhccCCc------------CHHHHHHHHHHHHHHHhhCh--hhhhHHHHHHHHHHHH-HhcCcchHHHHHHH
Q 022417 66 PESMIPCLIEGLDSK------------DWTNVCESLNNARRFALHHS--SLLEPNLEKVMAVVVK-AMKNPRSALCKTSI 130 (297)
Q Consensus 66 pe~~l~~~l~~L~s~------------dW~~~~eaL~~LRrLa~~h~--e~l~~~L~~i~~~v~~-~vknLRS~Vsk~A~ 130 (297)
+-..++.++.-|.+. +=+.+..|+..|..|+.... ..|. .+ ..++.++. .+++.-..|...|+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~-~~-G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC-QL-SGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH-HT-THHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHH-Hc-CCHHHHHHHHHcCCCHHHHHHHH
Confidence 344467777766543 34678999999999987322 1111 11 23456677 88999999999999
Q ss_pred HHHHHHHHHc---CCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccC
Q 022417 131 MAASDIFSAF---GDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKH 200 (297)
Q Consensus 131 ~tl~dLf~~l---~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~h 200 (297)
.++|.+...- +...++. ..++.++ .||.. +.+.-+++.|-.||..++.+-.+ ...++.|...+++
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll-~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGL--GALRKLL-RLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--THHHHHH-HHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHC--CCHHHHH-HHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999998531 1101111 1233332 33321 34678999999999999876543 2367778888889
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
.++.++..++..|.+++.. +.+......-.-+++.+..++...++++|+.+-.++..|-..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999876 333322221234556666778888999999999888777554
No 40
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.58 E-value=0.001 Score=70.84 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=124.2
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC-CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 109 KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD-KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 109 ~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~-~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
.++..+.+.+++=.+. -.||.+++.||+.++. ..++| .+-.+++.+|...+|....|+++|..|+.+++..++|
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP---YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH---HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc---chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 6888999999998888 9999999999977755 13444 3667788999988999999999999999999999998
Q ss_pred h---hHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 188 L---PLLQKLKTYVKHTN-PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 188 ~---kll~~L~~~~~hKn-~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
. .++|.|..++.+.+ =+.+..+..++..+++.. +. .....+..+++.+..++-|--+|+..+|++++..+-...
T Consensus 129 ~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 129 VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 3 68888888886554 467777778888888765 23 344558999999999999999999999999999877666
Q ss_pred ccc
Q 022417 264 TEN 266 (297)
Q Consensus 264 ~~~ 266 (297)
+..
T Consensus 207 ~n~ 209 (986)
T 2iw3_A 207 DNK 209 (986)
T ss_dssp CCT
T ss_pred CCc
Confidence 554
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.57 E-value=0.00054 Score=57.73 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=106.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.++..+..|+..|..|+.+.++.....+ ...++.++..+++....|.+.|+.+++.|...-.. ..+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 466788889999999999999999999976665433222 23677888889999999999999999999742111 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.. -...++.|+.-..+.+.-+++.|-.+|..++.+.... ..++.|...+.+.++.||..++..|.++.
T Consensus 134 ~~--~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 134 VI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HH--HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 00 0123455555445577889999999999998763322 36788888889999999999998887764
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.55 E-value=0.00032 Score=68.52 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=131.6
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..+...|.+.+.+.+..++..|+.|+.+..+..... -..+++.++..+.+....|...|+.+++.++..-.. .
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~--~ 308 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE--Q 308 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH--H
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH--H
Confidence 3456677788899999999999999999998666543221 123567788888999999999999999998632100 0
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
... -++ ..+..|+.-..+.+.-+++.|..+|..++.+.. ...+++.|...+.+.+..||..++..|.+++
T Consensus 309 ~~~--i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 309 TQK--VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHH--HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 000 000 011112111235677899999999988865432 2347788888889999999999999999988
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..-..+.+....-.-.++.+..++...+++++..+=.++..+.....
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 75443332211112345566778899999999998888777665543
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.55 E-value=0.0007 Score=66.27 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=132.4
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..++..|.+.|-+.+.+++..|+.|+.+..+..... -..+++.++..+.+.-..|...|+.+++.|... +...
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~ 327 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQ 327 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHH
Confidence 4456677788899999999999999999998766543221 134667778888898899999999999998632 1000
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
... -++ ..+..|+.-..+.+.-++..|..+|..++.+-.. ..+++.|...+.+.+..+|..++..|.+++
T Consensus 328 ~~~--i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 328 TQK--VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHH--HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000 000 1122222222356788999999999988764322 347788888889999999999999999988
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..-..+.+....-.-+++.+..++...+++++..+-.++..+.....
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 75433332111112245556678889999999998888877766554
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.48 E-value=0.0044 Score=57.01 Aligned_cols=187 Identities=13% Similarity=0.131 Sum_probs=117.8
Q ss_pred HHHHHh-ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIE-GLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~-~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..++. .|++.+=.-+..|+..|..++..+|+.=...+ ...++.++..++ +....|-++|+-+++.|...... ..+
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~-~~~ 161 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA-GLL 161 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH-HHH
Confidence 456677 78888888888888888888876664221111 134555566666 45788999999999999864332 111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
...+ ...++.|+.-..+...-++..|-.+|..++..-. ..-+++.|...+.+.++.||..++..|.+++..
T Consensus 162 ~~~~--~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLR--LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 1100 0123333322234567789999999999887622 224777788888999999999999999999976
Q ss_pred hCchhhhh-----ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKE-----LGLVSLVQVAAGLLN--DRLPEAREAARSMVNSMY 260 (297)
Q Consensus 220 ~g~~~l~~-----~~~~~ll~~~a~~l~--D~~pE~R~~aRk~l~~L~ 260 (297)
+...... ..+..+++-..+.+. +.+.|.++++.+++..+|
T Consensus 240 -~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 240 -FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp -CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred -ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 3222221 124455544455555 334566666555544433
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.48 E-value=0.0018 Score=63.28 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=125.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++..|.+.++..+..++..|..|+.+.++.....+ ..++..+...+++....|.++||.+++.|+..-.. ....
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~-~~~~- 372 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQ- 372 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-HHHH-
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-HHHH-
Confidence 45667778899999999999999999876554332211 23556778888999999999999999999853111 0000
Q ss_pred hhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh--------HHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 149 SDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP--------LLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 149 ~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k--------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
-++ .+++.|+.-..+.+.-++.+|..||..++.+.++.. +++.|...++++++.++..+...|.+++..
T Consensus 373 --v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 373 --VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp --HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 011 234444443445666789999999999888776542 477788888999999999999999998753
Q ss_pred ---hCch-hh----hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 ---MGLE-GM----KE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ---~g~~-~l----~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+.. .+ .+ +|+++ +-.+....+.|+++.|.+++..+
T Consensus 451 ~~~~~~~~~~~~~iee~ggl~~----ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 451 AEKLGETEKLSIMIEECGGLDK----IEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHH----HTGGGGCSSHHHHHHHHHHHHHH
T ss_pred hHhccChHHHHHHHHHCCcHHH----HHHHHcCCCHHHHHHHHHHHHHH
Confidence 2221 11 11 23444 45567788999998877765544
No 46
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.45 E-value=0.016 Score=52.28 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=144.4
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..+++.|.++|=..+..+|..|..+.+.-|..+. ..+.++.+.++...++--=-|+=.|+.|++.|.... .+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v---pL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV---PM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC---CB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---CC
Confidence 34677788888999999999999999999998887775 578899999998888888888888888888887432 34
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
++ +.++.+...|..=....+..++++|...|+.+ +-.+ ..+++..|.+-.++||+.+....-..+.++-.+-++..
T Consensus 109 ~~--~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 109 GS--KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp CH--HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred CH--HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 43 46788877776655678999999999999999 4444 45788888888899999999999888888888777555
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
+ .+.++.-+..+++--+|+.++.|=-++
T Consensus 186 i----~~~I~~eI~elL~~eD~~l~e~aLd~L 213 (265)
T 3b2a_A 186 H----LTLILDEIPSLLQNDNEFIVELALDVL 213 (265)
T ss_dssp C----GGGTTTTHHHHHTCSCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 456667788888888999998765443
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.33 E-value=0.012 Score=55.98 Aligned_cols=182 Identities=10% Similarity=0.091 Sum_probs=114.1
Q ss_pred cHHHHHhccCC-cCHHHHHHHHHHHHHHHhhChhhhhHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 69 MIPCLIEGLDS-KDWTNVCESLNNARRFALHHSSLLEPNLE--KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 69 ~l~~~l~~L~s-~dW~~~~eaL~~LRrLa~~h~e~l~~~L~--~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
.+..++..|.+ .||..+..++..|+.|+.. ++ ....+. ..++.++..+++.-..|...|+.+++.|+..-.+ ..
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~ 136 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AK 136 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hH
Confidence 45566666754 5999999999999999863 43 222222 4677888888888889999999999999876332 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----------------------hcC----------------
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVE-----------------------SIT---------------- 186 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~-----------------------~~s---------------- 186 (297)
.... -...++.|+.-..+.+.-++..+..+|..+.. ...
T Consensus 137 ~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 137 MAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 0000 01223333333333333333333333322211 000
Q ss_pred ----------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 187 ----------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 187 ----------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
....++.|...+.+.++.++..++..|.++...... ..+...+++.+.+++.+.++++|..+-.++
T Consensus 215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 013456666667777888888888888888764321 112457788889999999999999988777
Q ss_pred HHH
Q 022417 257 NSM 259 (297)
Q Consensus 257 ~~L 259 (297)
..|
T Consensus 291 ~~L 293 (529)
T 1jdh_A 291 SNL 293 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.29 E-value=0.0028 Score=61.82 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=123.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++..|.+.++..+..++..|..|+.+.++.....+ ..++..+...+++....|.++||.+++.|+..-.. ....-
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v 354 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQV 354 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHH
Confidence 45667778899999999999999999875554322211 23455667788899999999999999999742111 00000
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICVTK- 219 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~- 219 (297)
. -..+++.|+.-..+.+.-++.+|..||..++.+.++. .+++.|...++++++.++..+...|.++++.
T Consensus 355 ~--~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 355 V--NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp H--HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H--hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 0 0123444444445667789999999999988877654 2467788888999999999999999998863
Q ss_pred --hCchh-h----hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 --MGLEG-M----KE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 --~g~~~-l----~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+... + .+ +|+ +.+-.+....+.++++.|..++..+
T Consensus 433 ~~~~~~~~~~~~iee~ggl----~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 433 EKLGETEKLSIMIEECGGL----DKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HTTTCHHHHHHHHHHTTHH----HHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHcCcH----HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23211 1 11 233 3445567788999988777665443
No 49
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.05 E-value=0.027 Score=53.37 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=124.4
Q ss_pred CCCCCccc--cHHHHHhccCCc--CHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 022417 61 KAIPDPES--MIPCLIEGLDSK--DWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASD 135 (297)
Q Consensus 61 ~Pl~~pe~--~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~d 135 (297)
.||.+++. .++++ ...++. |=.+..+++..+=.+.... +-|.. ....+...+++.+.+-+-.+-|-.-..+..
T Consensus 17 ~p~~~~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G-~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~ 94 (355)
T 3tjz_B 17 NPFQHLEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQG-EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94 (355)
T ss_dssp ---CCCCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCC-CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 67877776 57763 455443 4444445676665555433 22222 234667789999999999999988888876
Q ss_pred HHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 136 IFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 136 Lf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+... .. . .+ -.+..|.+-..+.|.++|--|=++|..+...---..+.+.+..++.|+||-||++++.+...
T Consensus 95 ~~~~-~~-e------~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 95 MSCI-AE-D------VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp HTTT-SS-C------GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hCCC-HH-H------HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6544 11 1 23 23344444455689999988888777664443345677777889999999999999999988
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++.... +- .++++..+..+++|.+|-+-.+|-.++..+.+
T Consensus 166 L~~~~p-e~-----v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 166 LLKCSF-DV-----VKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTTCH-HH-----HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HhccCH-HH-----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 876532 32 34578888889999999999888877776654
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.05 E-value=0.0036 Score=62.76 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=104.9
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.+++.|=..+++++..|=.+-....+ +......+++.+.+..-.+-|-+-..+..++. . +++ +-.
T Consensus 41 ~~l~~~~~~~k~~~l~kli~~~~~G~d-----~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~---~---~~e---~~~ 106 (618)
T 1w63_A 41 SSFREEDNTYRCRNVAKLLYMHMLGYP-----AHFGQLECLKLIASQKFTDKRIGYLGAMLLLD---E---RQD---VHL 106 (618)
T ss_dssp HHHTTTCTTTHHHHHHHHHHHHHTTCC-----CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCC---C---CHH---HHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHcCCC-----CcchHHHHHHHHcCCchHHHHHHHHHHHHHhC---C---CcH---HHH
Confidence 344444444555655444433332222 22233455567777777777777776555542 1 222 333
Q ss_pred HHHHHHHH-hccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 155 LVLQLLMK-ASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 155 ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
++...|.| ..+.|.+++..|-++|..+...--...+++.|..+++|.|+.||++++.++..+...-. +. .+.+
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-----v~~~ 180 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-----MEMF 180 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-----GGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-----HHHH
Confidence 34444444 45689999998888887775221123457777889999999999999999999998532 32 2356
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++.+..+++|.+|.++.+|=.++..+
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 67777888999999998887666654
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.96 E-value=0.047 Score=56.24 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=124.0
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC----
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK---- 143 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~---- 143 (297)
.+..++..|++.+...+..|+..|..|+.++++.-.... ..+++.++..+++--..|...|+.++..+.. ++.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~ 312 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKL 312 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHH
Confidence 456777888899999999999999999987765433222 3567788888887666777888888876652 210
Q ss_pred -CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 022417 144 -LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL------PLLQKLKTYVKHTNPRIRAKAAISISIC 216 (297)
Q Consensus 144 -~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~hKn~~VR~~aA~~L~~~ 216 (297)
..+. +.++.++ .+|. .. +..-+.+.+..+|..++.+-... .+++.|...+++.++.+++.++..|.++
T Consensus 313 ~i~~~--~~i~~Lv-~lL~-~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 313 IILAS--GGPQALV-NIMR-TY-TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHTT--THHHHHH-HHHT-TC-CCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCHHHHH-HHHh-cC-CHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0111 1233333 2332 22 34556677778888777532211 2467888888888999999999999998
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+..... ..+...+++.+..++.+.++++|..|-.++..|
T Consensus 388 ~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 388 SDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 865432 123467888889999999999999888777766
No 52
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.89 E-value=0.013 Score=60.52 Aligned_cols=179 Identities=8% Similarity=0.036 Sum_probs=112.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC--CCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK--LLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~--~md 146 (297)
.+..++..|.+.+...+..++..+|.+.. .++. ...++.++..+++-...|-..|+.+++.|+...... .++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~--~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDD--AELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhH--HHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 45788889988888888888887775522 2221 445666666666777889999999999998532210 111
Q ss_pred cchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhc------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESI------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
...++..|+....+ .+..++..|..+|..+...- .....++.|...+++.++.+|..++..|.+++..
T Consensus 190 -----~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 190 -----SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -----ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 12344444443333 37789999999998865431 1234788888888999999999999999999876
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-...+ ....-...++.+.+++.+.++++|..+-.++..|
T Consensus 265 ~~~~~-~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 265 QEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp STTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred ChhhH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33211 0010123566677788888999988877776654
No 53
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.84 E-value=0.028 Score=56.00 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=122.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC--CCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD--KLL 145 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~--~~m 145 (297)
.+..++..|++.+...+..|+..|+.|+.+.++...... ..+++.++..+++-...+-..|+.++..|...-.. ..+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 466778888999999999999999999987644332211 35677888888877677777777788877742100 000
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
-. .+.++.++ .+|. .. +..-+.+.+..+|..+..+-.. ...++.|...+++.++.+|..++..|.++...
T Consensus 179 ~~-~g~v~~Lv-~lL~-~~-~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 179 LA-SGGPQALV-NIMR-TY-TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HH-TTHHHHHH-HHHT-TC-CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HH-cCChHHHH-HHHH-cC-ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 00 11233232 3332 11 2344566666676665432111 13577788888888999999999999998764
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
... ......+++.+.+++.+.++++|..+-.++..|-.
T Consensus 255 ~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 255 ATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp CTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 321 12346788889999999999999999888876643
No 54
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.59 E-value=0.037 Score=55.18 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=101.9
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNP-RSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknL-RS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|+++|+..+..|+..|..|+.+.+....- ....++..++..+.+- ...+.+.|+.++..|...-.. ..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~--~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HH
Confidence 4778888889999999999999999999866432110 1235667777777653 567888888888866532110 00
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
...+ ...+..|+.-..+.+.-++..|-.+|..++..-.. ...++.|...+++.++.++..++.+|.++..
T Consensus 93 ~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 93 AIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 0000 12344444444566788999999999999876432 3467888888999999999999888888775
No 55
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.56 E-value=0.096 Score=49.72 Aligned_cols=181 Identities=11% Similarity=0.064 Sum_probs=113.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhh---h---------HHH-----------------------------
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLL---E---------PNL----------------------------- 107 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l---~---------~~L----------------------------- 107 (297)
.+..++..|++.+|+.+..+...|+.|+..+++.- . ..|
T Consensus 144 ~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 35566777788888887777777777665433210 0 000
Q ss_pred --HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 108 --EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 108 --~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
..+++.+...+++....+.++|+.+++.|.....+ .+. ...+++.|+.-..+++.-+++.|-.+|..++.+-
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 12455566666766778889999999988876433 222 3455666665556678889999999999886642
Q ss_pred C-------chhHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhCch-----hhhhccHHHHHHHHHHhccCCC-HHHHH
Q 022417 186 T-------PLPLLQKLKTYVKH--TNPRIRAKAAISISICVTKMGLE-----GMKELGLVSLVQVAAGLLNDRL-PEARE 250 (297)
Q Consensus 186 s-------~~kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g~~-----~l~~~~~~~ll~~~a~~l~D~~-pE~R~ 250 (297)
. ....++.|...+.+ .++.+|..++..|.++....+.. .+... ..++.+.+++.+.+ +++|.
T Consensus 298 ~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~---~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH---YGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT---TCHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc---CChhHHHHHhccccchHHHH
Confidence 2 12346666655543 34899999999999987543321 12221 22555666777766 58887
Q ss_pred HHHHHHHH
Q 022417 251 AARSMVNS 258 (297)
Q Consensus 251 ~aRk~l~~ 258 (297)
.+=.++..
T Consensus 375 ~a~~~l~n 382 (529)
T 1jdh_A 375 ATVGLIRN 382 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77555443
No 56
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.52 E-value=0.057 Score=54.31 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCch
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
....+++.+.+..-.+-|.+-.+++.++. -+++ +-.++...|.|- .+.|.+++..|=++|..+...--..
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~------~~~e---~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVN------SNSE---LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCC------CCHH---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcc------CCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 34566778888888877777777666552 1222 233444445554 5579999887777776663211122
Q ss_pred hHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYV--KHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 189 kll~~L~~~~--~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+++.+..++ .|.+|.||++++.++..+.+. .++.+ .. +.+++.+.++++|.+|-|+.+|=.++..+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~-~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLV-PM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGC-CC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-Chhhc-Cc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 4556666788 999999999999999999984 43433 21 3566777788999999999988887766543
No 57
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.29 E-value=0.2 Score=52.37 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=105.9
Q ss_pred CccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHcC
Q 022417 65 DPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK---NPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 65 ~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk---nLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
+|++-+..-++ .++.|..+.-|...|..|+.+.++.+.+.+-..+..+...-. +.-=..-..|+.++|-+.....
T Consensus 360 dp~e~i~~d~e--~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 360 DPIEYIRRDLE--GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp CHHHHHHHHHH--C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred CHHHHHHhccC--cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 45444443333 356688999999999999998886665444333333333211 1111344578888888875421
Q ss_pred -CC-CCCc--chhhHHHHHHH-HHHHhccc---cHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHH
Q 022417 142 -DK-LLDS--TSDALDNLVLQ-LLMKASQD---KKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 142 -~~-~md~--~~~~ld~ll~~-LL~Ka~~s---n~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA 210 (297)
.. .+.. ..-.++..+.. ++.-..+. ..++|..|-.++..+...+++. .+++.|..++.+.++.||..+|
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 11 1221 00024443322 22222334 8999999999999999887643 5666777888889999999999
Q ss_pred HHHHHHHHhhC----------chhhhhccHHHHHHHHHHhccCC
Q 022417 211 ISISICVTKMG----------LEGMKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 211 ~~L~~~v~~~g----------~~~l~~~~~~~ll~~~a~~l~D~ 244 (297)
..|.++++..+ .+.+..+ ++.+++.+..+++..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKH 560 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhc
Confidence 99999988532 1222222 666777776666654
No 58
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.17 Score=44.96 Aligned_cols=140 Identities=9% Similarity=0.059 Sum_probs=95.8
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChh------hhhHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSS------LLEPNLEKVMAVVV-KAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e------~l~~~L~~i~~~v~-~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+.+.+=.....||..+..++..... .+......+++.++ +.+.+.|..+...|+.++.+++...+.
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----- 136 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----- 136 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----
Confidence 345677888888999999999864322 23344566677665 568999999999999999988865443
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh-----cCchhHHH----HHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES-----ITPLPLLQ----KLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~-----~s~~kll~----~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
.+.++..++.-..+.|.-++.++-..|..++.. +++...++ .|...+.|.|+.||..+..++..+..
T Consensus 137 ----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp ----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 122232232223456788888888888877765 23344444 44567899999999999999999998
Q ss_pred hhCch
Q 022417 219 KMGLE 223 (297)
Q Consensus 219 ~~g~~ 223 (297)
.+|..
T Consensus 213 ~~G~~ 217 (278)
T 4ffb_C 213 VTGNN 217 (278)
T ss_dssp C----
T ss_pred HhCcc
Confidence 88853
No 59
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.25 E-value=0.086 Score=49.45 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=118.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhh-Chh---hhhHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHc-CC-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALH-HSS---LLEPNLEKVMAVVVKA-MKNPRSALCKTSIMAASDIFSAF-GD- 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e---~l~~~L~~i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l-~~- 142 (297)
+..++..|++.+=+.+..|...|+-|+.. .++ .+.. ...++.++.. .++-...+.+.|+-++..|.... ++
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 66777888888888999999999999874 232 2221 1234555554 45566788889998988887521 11
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHhc--Cc--------hhHHHHHHhhccCCCHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKK----FVCEEADRALNTMVESI--TP--------LPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~----FI~e~A~~AL~~Mv~~~--s~--------~kll~~L~~~~~hKn~~VR~~ 208 (297)
..+-.. ...++.|+.-....+. -+.+.|..+|..+..++ ++ .-.++.|...+++.+..++..
T Consensus 207 ~~i~~~----~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 207 ADICAV----DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHS----TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHh----cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 011100 1233333332222211 47888999998887631 11 125777888888999999999
Q ss_pred HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..|.++...- .+......-.-.++.+..++..+++++|+.|-.++..|-.
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 999999997421 1111111112356677788899999999998888877655
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=96.21 E-value=0.063 Score=56.03 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=123.8
Q ss_pred cHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+.-++..|.++ +=..+++|+..|+.|+.+.++.-...+. ..++.+...+.+-...|-+.|+.+++.|... +....
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~ 658 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIK 658 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHH
Confidence 566777777755 3355689999999999865443222121 2456666667777788999999999998742 21111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc-------Cc-hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI-------TP-LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~-------s~-~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
...+. ...+..|+.=....+.=++++|..||..+.... -. ...++.|...+.+.+..+|..++..+.+++.
T Consensus 659 ~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 10000 023343333334566779999999998887631 11 4577788888899999999999999999987
Q ss_pred hhCchh---hhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHh
Q 022417 219 KMGLEG---MKELGLVSLVQVAAGLLND---RLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 219 ~~g~~~---l~~~~~~~ll~~~a~~l~D---~~pE~R~~aRk~l~~L~~~~ 263 (297)
. +.+. +.+. -.++.+..++.+ .++++++.|..++..+-...
T Consensus 738 ~-s~e~~~~l~e~---G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 738 A-GEEIAKKLFET---DIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp T-CHHHHHHHHTS---THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHC---CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 2 2221 2222 245555666654 48999999999998876544
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.18 E-value=0.66 Score=41.83 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=135.3
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.-+..++.-++++|=...+.|+..+++|...-| +-...+..+...+...+++.+--+.=+|...+|-+ + ...+
T Consensus 75 ~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp-L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----k--v~~~ 147 (265)
T 3b2a_A 75 RHLDVFINALSQENEKVTIKALRALGYLVKDVP-MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL----Q--PLED 147 (265)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----C--BSCC
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----C--cccc
Confidence 346677778889999999999999999987443 22356788888999999988888887877777766 2 2222
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
. ..+-..+.-|+ .+.|.-+...|=++|-.|..+-. -..++.-+..-++|.++.++..+--.+..++.+-=.+
T Consensus 148 ~-~~V~~~l~sLl---~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~ 223 (265)
T 3b2a_A 148 S-KLVRTYINELV---VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE 223 (265)
T ss_dssp C-HHHHHHHHHHH---TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS
T ss_pred h-HHHHHHHHHHH---hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH
Confidence 1 12555666665 68889999999999999977664 2345555566789999999998877776666541111
Q ss_pred hhhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHh
Q 022417 224 GMKELGLVSLVQVAAGLL-NDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l-~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+. -++.+++..+..+. -.|.|+.|.-||+..-.+..+.
T Consensus 224 ~~~-~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~~ 263 (265)
T 3b2a_A 224 NVK-IELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVI 263 (265)
T ss_dssp CCH-HHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHC
T ss_pred hHH-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh
Confidence 111 13678888888888 8999999999999988777654
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.11 E-value=0.038 Score=53.05 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=114.0
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---cCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA---FGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~---l~~~ 143 (297)
..+..++..|++.|+..++.|...|+.|+.++++.-.. .-...++.++..+++....+.+.|+.++..|... .+.
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~- 80 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL- 80 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 45778899999999999999999999999766542211 1134577888888888889999999999999852 111
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh------HHHHHHhhc--------cC--------C
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP------LLQKLKTYV--------KH--------T 201 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k------ll~~L~~~~--------~h--------K 201 (297)
.+- +...++.++ .||.+ +.+.-+++.|..||..+..+ ...+ .++.|...+ ++ .
T Consensus 81 ~i~-~~G~i~~Lv-~lL~~--~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 81 ETR-RQNGIREAV-SLLRR--TGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHH-HTTCHHHHH-HHHTT--CCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHH-HcCCHHHHH-HHHhh--CCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 000 011232222 22221 34667899999999988876 3322 355554444 11 3
Q ss_pred CHHHHHHHHHHHHHHHHhhCc--hhhhh--ccHHHHHHHHHHhccCC--CHHHHHHHHHHHHH
Q 022417 202 NPRIRAKAAISISICVTKMGL--EGMKE--LGLVSLVQVAAGLLNDR--LPEAREAARSMVNS 258 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~--~~l~~--~~~~~ll~~~a~~l~D~--~pE~R~~aRk~l~~ 258 (297)
.+.|.+.++..|.++... .. ..+.+ ++++.+++.+.....++ +.++.+.+-.++..
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~n 217 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHh
Confidence 466777899889988864 11 11332 33666666666544333 33445555444443
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.11 E-value=0.026 Score=44.47 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=61.8
Q ss_pred hccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc
Q 022417 163 ASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 163 a~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~ 242 (297)
..+.+..++..|-.+|..+ .....++.|...+++.++.||..++..|..+ |. ...++.+..++.
T Consensus 51 L~d~~~~vR~~A~~aL~~~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~--------~~a~~~L~~~l~ 114 (131)
T 1te4_A 51 LSNEDWRIRGAAAWIIGNF----QDERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG--------ERVRAAMEKLAE 114 (131)
T ss_dssp GGCSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS--------HHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc--------HHHHHHHHHHHh
Confidence 3467889999999888765 3456788888888999999999998776543 32 345666777889
Q ss_pred CCCHHHHHHHHHHHH
Q 022417 243 DRLPEAREAARSMVN 257 (297)
Q Consensus 243 D~~pE~R~~aRk~l~ 257 (297)
|.++.+|..|..++.
T Consensus 115 d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 115 TGTGFARKVAVNYLE 129 (131)
T ss_dssp SCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987764
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.07 E-value=0.13 Score=51.38 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=47.7
Q ss_pred chhHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVK--HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 187 ~~kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
|..++..|...++ .-++.||..+...+..+.-+.+. ..+.+.+.+..+.+|.++|+|+-|...+..|..
T Consensus 507 ~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 507 EDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 4455555544332 46888888776666666555431 146777788889999999999999987766643
No 65
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.94 E-value=0.1 Score=54.47 Aligned_cols=187 Identities=12% Similarity=0.003 Sum_probs=124.7
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~ 147 (297)
+..++..|++.+=..+..|...|..|+. +++.-...+ +..++.++..+++--..+-++|+.|++.|+..-... .+..
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 5566777788888899999999999995 454222111 235667777777766778899999999998653220 0110
Q ss_pred chhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 148 TSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
....+.+++|+.=... ++.....+|-.||..+..+-.. ...++.|...+.|.++.||+.++.+|.+++.
T Consensus 576 --~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~- 652 (810)
T 3now_A 576 --QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM- 652 (810)
T ss_dssp --HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-
T ss_pred --hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-
Confidence 0122345555543332 3445556777788766554211 2357777778889999999999999999986
Q ss_pred hCchhhhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGL-VSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~-~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+.+....+.. ...++.+..++...+.++|..|=.++..|-.
T Consensus 653 -~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 653 -SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp -SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 3332222211 2467788889999999999999888887765
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.61 Score=40.93 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=119.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+.-++.++..|+++-|..+-.||..+-.++...|++..+.+.+++..+-+. +|+-.-+++.+.||- .-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks----------EaIpltqeIa~a~G~-la~ 99 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQ-MAK 99 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHhH-HHH
Confidence 345778899999999999999999999999999999999888877766443 344444555555554 222
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc--hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP--LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
--++-++.+++.|+.--.-...=++-.-..+|..+...-+. .-++.-+.+-+++||..=|..+ .+.+.-+|..+
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~a----LnFi~alGen~ 175 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA----LNFIEAMGENS 175 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHH----HHHHHTCCTTT
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHH----HHHHHHHhccC
Confidence 22456888888887654333344666777888766554332 2455556677789996555433 34456667543
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. .+ ..-+++-+-.++.|++--+|..|=..+..+
T Consensus 176 ~-~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 176 F-KY-VNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp H-HH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred c-cc-cCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 2 22 344566677889999999999887777654
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.86 E-value=0.24 Score=48.18 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=115.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhh-Chh---hhhHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHc-CC-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALH-HSS---LLEPNLEKVMAVVVKA-MKNPRSALCKTSIMAASDIFSAF-GD- 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e---~l~~~L~~i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l-~~- 142 (297)
+..++..|.+.|=+.+..|...|+-|+.. .++ .+.. ...++.++.. .++-...+.+.|+.++..|.... .+
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 55666777777777777888888888763 222 1211 1245556664 45556688899999999988632 11
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHh--cCc--------hhHHHHHHhhccCCCHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKK----FVCEEADRALNTMVES--ITP--------LPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~----FI~e~A~~AL~~Mv~~--~s~--------~kll~~L~~~~~hKn~~VR~~ 208 (297)
..+-.. ...++.|..-....+. -+.+.|..+|..+..+ .++ .-.++.|...+++.+..++..
T Consensus 323 ~~I~~~----~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 323 ADICAV----DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHS----TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHh----cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 011000 1223333222222211 4888899999888763 121 124677778888999999999
Q ss_pred HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..|.++... +.+......-.-.++.+..++..+++++|+.|-.++..|-.
T Consensus 399 A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 399 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999843 11211111113356677788889999999988888776643
No 68
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.75 E-value=0.0073 Score=60.82 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHH
Q 022417 36 VNDENKASFPPSADAFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVV 115 (297)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~ 115 (297)
+.|+..+|..+.+-|..-.+ .+++.+-..+..++.++....|+.+-.||.-||=+ .+++.. |..+++.+.
T Consensus 236 VSDqVVAPVRETaAQtLGaL-----~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL 305 (800)
T 3oc3_A 236 VDDRTVAPVRDAAAYLLSRI-----YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLV 305 (800)
T ss_dssp SSSSCBCHHHHHHHHHHHHH-----TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHH
T ss_pred ccCeeeeehHHHHHHHHHHH-----HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHH
Confidence 56788889888776665554 23444456677777788889999999999999977 555544 888888888
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHH---HHHHhccccHHHHHHHHHHHHHHHHh----cCch
Q 022417 116 KAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQ---LLMKASQDKKFVCEEADRALNTMVES----ITPL 188 (297)
Q Consensus 116 ~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~---LL~Ka~~sn~FI~e~A~~AL~~Mv~~----~s~~ 188 (297)
..+.+.-=-|--.|..|+..+. ... .++.++.. +|... ++-..-....-.-|..++.+ +..+
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA---~p~-------~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~a~~dp 374 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP---ITD-------SLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPELSIPP 374 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC---CSS-------THHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTTCCCCS
T ss_pred hhcCCcccHHHHHHHHHhhhhc---chh-------hHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcccccCh
Confidence 8887665555555555555554 110 12222222 22221 11000000111112222221 2334
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
.++|.|.+...|--+.||..+.+.+..++ .. +.+--.-.+.+-+.++|+|+.+.+++.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~~-------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS----EE-------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC----CH-------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH----hh-------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88999999999999999999988776555 11 222223445678899999999998874
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.61 E-value=0.6 Score=46.80 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=110.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM--KNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v--knLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..+...|.+.+-..+.-||..+-++. .|+ ..+.+++.|.+.+ .+..+-|-|.|+.|+..+|..... .+..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~ 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG--SRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPM 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC--CHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCc
Confidence 335556777777766666665554442 233 3467778888998 899999999999999999996555 5542
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHH-----------------------------
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQ----------------------------- 192 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~----------------------------- 192 (297)
. .+-+.+..|| .+.+..|...|-.+|..++..-+. .+++.
T Consensus 186 ~--~~~~~l~~lL---~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 G--DWTSRVVHLL---NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp C--SCHHHHHHHT---TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred h--hHHHHHHHHh---CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 1 1233333443 467778888888887777654311 01111
Q ss_pred ---HHHhhccCCCHHHHHHHHHHHHHHHHhhC-ch------------hh-hh------------ccHHHHHHHHHHhccC
Q 022417 193 ---KLKTYVKHTNPRIRAKAAISISICVTKMG-LE------------GM-KE------------LGLVSLVQVAAGLLND 243 (297)
Q Consensus 193 ---~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~------------~l-~~------------~~~~~ll~~~a~~l~D 243 (297)
.|..+...-++..+...-.+|..++.... .. .+ .+ .-+...+..+.+|+..
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~ 340 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 340 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 11122222245665555555555553320 00 00 00 0145677888899999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 022417 244 RLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 244 ~~pE~R~~aRk~l~~L~~~ 262 (297)
.++++|+.|=..+..+-..
T Consensus 341 ~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASS 359 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHhc
Confidence 9999999999888777543
No 70
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.35 E-value=0.49 Score=48.88 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--c---hhHHHHHHhhcc
Q 022417 125 LCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT--P---LPLLQKLKTYVK 199 (297)
Q Consensus 125 Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--~---~kll~~L~~~~~ 199 (297)
.--.||.++|-+...+.. ..++ .++.++. .|....+++..|+..+-.++..+...+. + ..+++.|..+++
T Consensus 465 ~~eaal~al~~i~~~~~~-~~~~---~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~ 539 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDV-NYSD---VVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG 539 (963)
T ss_dssp HHHHHHHHHHHHTTSCCS-SCCS---HHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCc-hhhH---HHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 445578888887777665 4443 3666665 3334455678899999999998877653 2 356777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhc
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+ +.|+..++..|..+++..+ ..+..+ .+.+++.+..++.. -..+.|...-.++..+-.+.+
T Consensus 540 ~--~~V~~~A~~al~~l~~~~~-~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 540 N--PELSVSSVSTLKKICRECK-YDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp C--GGGHHHHHHHHHHHHHHTG-GGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred C--chHHHHHHHHHHHHHHHHH-HHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 5 8899999999999998765 233333 67777777776663 457788777777776655443
No 71
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.10 E-value=0.21 Score=40.83 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=70.1
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+..++.+|...++|+|+.+...+..+|..|++.-|..--...+-..+++.+.+.+...+++||+-...++......|...
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888888899999999999999999999988654333333445555555666678999999999999999999866
Q ss_pred hhh--hHHHHHHHHHh
Q 022417 267 EEH--KQEAWQSFCQS 280 (297)
Q Consensus 267 ~~~--~~~~~~~~~~~ 280 (297)
.+- -.+.|+.+-.+
T Consensus 120 ~~l~~i~~~Y~~Lk~~ 135 (140)
T 3ldz_A 120 PQLSLISAMIKNLKEQ 135 (140)
T ss_dssp GGGTHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHc
Confidence 431 23666665443
No 72
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.06 E-value=1.1 Score=39.48 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=113.7
Q ss_pred ccccHHHHHhccCCcCH--HHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-cC
Q 022417 66 PESMIPCLIEGLDSKDW--TNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSA-FG 141 (297)
Q Consensus 66 pe~~l~~~l~~L~s~dW--~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~-l~ 141 (297)
.+..+..+++.|.+.|. +.++.|...|+.|+..+++.-.... ...++.++..+++-...|-+.|+-++..|... -.
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 45678899999999999 8889999999999987765322211 23468888889998899999999999999742 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-----HHHHHHh-------hc---------cC
Q 022417 142 DKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-----LLQKLKT-------YV---------KH 200 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-----ll~~L~~-------~~---------~h 200 (297)
++..-.+...++.++ .||... ...-+++.|..+|-.+..+....+ .++.|.. |. +.
T Consensus 86 nk~~I~~~GaI~~Lv-~lL~~~--~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 86 NKLEVAELNGVPRLL-QVLKQT--RDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHTTHHHHHH-HHHHHC--CCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHcCCHHHHH-HHHccC--CCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCccccccccccc
Confidence 000000122343333 333322 345588999989988865443322 2344421 21 12
Q ss_pred CCHHHHHHHHHHHHHHHHh--hCchhhhh-cc-HHHHHHHHHHhccCCCH
Q 022417 201 TNPRIRAKAAISISICVTK--MGLEGMKE-LG-LVSLVQVAAGLLNDRLP 246 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~--~g~~~l~~-~~-~~~ll~~~a~~l~D~~p 246 (297)
.++.|+..++.+|.++.-. -+...+.+ .| ++.++..+..++.++.+
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~ 212 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP 212 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccc
Confidence 4779999999999888642 22233443 24 58888888888766544
No 73
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.06 E-value=0.19 Score=42.19 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND-RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D-~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+|+.|...+..+|..|++.-|..-.....-..+++.+.+.+.. .+++||+-...++......|.
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3557888888889999999999999999999999886543333334455555555544 678999999999999999998
Q ss_pred cchhh--hHHHHHHHHHhc
Q 022417 265 ENEEH--KQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~~--~~~~~~~~~~~~ 281 (297)
...+- =.+.|+.+-.+-
T Consensus 129 ~~~~l~~i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 129 KDPQFSLISATIKSMKEEG 147 (163)
T ss_dssp TCSTTHHHHHHHHHHHTTT
T ss_pred CCcccHHHHHHHHHHHHcC
Confidence 65431 236666665443
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.94 E-value=0.024 Score=53.72 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
.+...+.+.+=--+--| ||.|..-..+ ..++.+.+.|.+.+.+-.+.|.|+|+.|+..||..-.. ..
T Consensus 108 sl~kDl~~~N~~iR~lA---LRtL~~I~~~---~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v------ 174 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPA---VRALCQITDS---TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VV------ 174 (355)
T ss_dssp HHHHHHHSSCHHHHHHH---HHHHHHHCCT---TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HH------
T ss_pred HHHhhcCCCcHhHHHHH---HHHHhcCCCH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HH------
Confidence 44455555553333333 3444432222 23577888999999999999999999999988744222 22
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVE 183 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~ 183 (297)
...+..+-.-..++|.++.-.|-.+|..|.+
T Consensus 175 -~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 2222222222245666666555555555543
No 75
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.79 E-value=0.62 Score=48.13 Aligned_cols=178 Identities=8% Similarity=0.095 Sum_probs=111.6
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
++.+|..+-.++-.+..++..-.+...+.+..++..+. .+.+....|-..+|.++|-+...++. . .+.+..++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~-~----~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD-H----PVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH-C----HHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh-C----HHHHHHHHH
Confidence 56799999999999999987654433455666666433 33333456889999999999887765 2 124666666
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhCchhhhhcc
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKH--TNPRIRAKAAISISICVTKMGLEGMKELG 229 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~ 229 (297)
.|+.-..+ .-|+..|..|+..+++.|.. ..++..|.....+ -+...|..+...+..++..++.+....+
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~- 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN- 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 66654433 56899999999999987643 2344444443332 3567888888888888877763333232
Q ss_pred HHHHHHHHHHh----c-cCCCHHHHHHHHHH---HHHHHHHhc
Q 022417 230 LVSLVQVAAGL----L-NDRLPEAREAARSM---VNSMYNAFT 264 (297)
Q Consensus 230 ~~~ll~~~a~~----l-~D~~pE~R~~aRk~---l~~L~~~~~ 264 (297)
++.+++.+... + ++.+++.|...... +..+.+.++
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333332222 2 23478887754444 444455544
No 76
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=94.62 E-value=0.37 Score=39.95 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=70.9
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
|..++..|..-++|+|+.+...+..+|..|++.-|..-.....-..+++.+.+.+.+ .+++||+-...++....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 556888888888999999999999999999999996544445556777777788765 47899999999999999
Q ss_pred HHhccchhhhHHHHHHHH
Q 022417 261 NAFTENEEHKQEAWQSFC 278 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (297)
..|.... .=.+.|+.+-
T Consensus 126 ~~f~~~p-~i~~~Y~~Lk 142 (149)
T 3g2s_A 126 VGLPEEV-KIAEAYQMLK 142 (149)
T ss_dssp HHCTTCH-HHHHHHHHHH
T ss_pred HHhCCCc-hHHHHHHHHH
Confidence 9997543 2234555443
No 77
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.47 E-value=0.35 Score=51.61 Aligned_cols=140 Identities=8% Similarity=0.057 Sum_probs=106.2
Q ss_pred cCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 80 KDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMK-----NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vk-----nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
.+|..+--++--++.++..- ++...+.++++++.+...+. +.+..|..++|-++|...+.+.. +++.+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-----~~~~L~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-----HWNFLR 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-----cHHHHH
Confidence 68999999999999998643 33467788899998888776 36666777999999999988865 134688
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------------PLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.++..|+....+++.-|++.|..|+..+++.|... .++..+......-.+.-+..+...+..++..
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 88888888888888889999999999999998632 2233333333445666667778888888888
Q ss_pred hCchh
Q 022417 220 MGLEG 224 (297)
Q Consensus 220 ~g~~~ 224 (297)
.+...
T Consensus 620 ~~~~~ 624 (1023)
T 4hat_C 620 ERSVA 624 (1023)
T ss_dssp CCSHH
T ss_pred CCCHh
Confidence 77543
No 78
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=94.46 E-value=0.44 Score=39.38 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=71.8
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
|..++.+|..-++|+|+.+...+..+|..|++.-|..-....+-..+++.+.+.+.+ .+++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 556777887788999999999999999999999996544455557788888888875 37899999999999999
Q ss_pred HHhccchhhhHHHHHHHHHh
Q 022417 261 NAFTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~ 280 (297)
..|..... =.+.|+.+-.+
T Consensus 116 ~~f~~~p~-i~~~y~~Lk~~ 134 (148)
T 1mhq_A 116 VWFPEDIK-IRDAYQMLKKQ 134 (148)
T ss_dssp HHCTTCHH-HHHHHHHHHHT
T ss_pred HHcCCCch-HHHHHHHHHHc
Confidence 99875432 33555554443
No 79
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.35 E-value=0.81 Score=48.55 Aligned_cols=94 Identities=23% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHhcCchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 156 VLQLLMKAS-QDKKFVCEEADRALNTMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 156 l~~LL~Ka~-~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
+..||+.+. +.+.+||..|-.+|..+.-. .+ ..++.+.. ...+.++.||+.++..|-.+.. +.+...+
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~-e~v~rlv~~L~~~~d~~VR~gAalALGli~a--------Gn~~~~a 648 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--------GKGLQSA 648 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SC-SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--------SSCCHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--------CCCcHHH
Confidence 344555554 35678888877777654222 23 23444443 4557788888887765544332 1234678
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++++..+..|.+.+||..|-.++-.+
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988776643
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.33 E-value=0.76 Score=42.92 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhhChhhh--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC-CC--cchhhHHHHHH
Q 022417 83 TNVCESLNNARRFALHHSSLL--EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL-LD--STSDALDNLVL 157 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l--~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~-md--~~~~~ld~ll~ 157 (297)
.-+..|...|+.|+....+.- ......+++.++..+++....|...|+-++..|... .+.. -+ .+...++.++.
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHH
Confidence 457788888888886554221 112355688888999988889999999999998642 1100 00 00122333332
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCc--------hhHHHHHHhhccCCCH----HHHHHHHHHHHHHHHhh--Cch
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITP--------LPLLQKLKTYVKHTNP----RIRAKAAISISICVTKM--GLE 223 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--------~kll~~L~~~~~hKn~----~VR~~aA~~L~~~v~~~--g~~ 223 (297)
.| .+ ..+.-+.+.|..||..+..++.. .-.++.|...+.+.+. .|+..++..|.++...+ +.+
T Consensus 178 lL-~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 254 (354)
T 3nmw_A 178 CA-LE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254 (354)
T ss_dssp HH-HH--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HH-hc--CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH
Confidence 22 22 23445677888888888774422 2356667666665544 58888888888776421 111
Q ss_pred h---hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 224 G---MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 224 ~---l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. +.+ .-.++.+..++.+++.++++.|=.+++.|
T Consensus 255 ~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 255 HRQILRE---NNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HHHHHHT---TTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1 222 22466677788899999998887777766
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.15 E-value=1.2 Score=46.21 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK--NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk--nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
.+|..+-.+|..+..++..-++...+.+..++. ++..+. +....|-..||.++|.+...++. ..+ .+..++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~----~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPA----YIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHH----HHHHHHH
Confidence 799999999999999987555444566777777 555555 45778999999999999998886 322 4677777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhC
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPL------PLLQKLKTYVKH--TNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g 221 (297)
.|+.-. + .-|+..|..|+..+++.|... .++..|.....+ -....+..+...+..++..++
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 766544 3 558999999999999887421 233334343433 346778888888888887665
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.03 E-value=1.6 Score=45.45 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC----------CCCCCcchh
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG----------DKLLDSTSD 150 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~----------~~~md~~~~ 150 (297)
.=--|..++..+-|++.+-+ ...+..++..++..+.+.---|...||.++..++.... +..+.|.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-- 545 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-- 545 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT--
T ss_pred CceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh--
Confidence 44557788888888876522 23577778888888887766688999999999887532 2235554
Q ss_pred hHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHh----cCc--hhHHHHHH----hhc-cCCCHHHHHHHHHHHH
Q 022417 151 ALDNLVLQLLMKASQD-----KKFVCEEADRALNTMVES----ITP--LPLLQKLK----TYV-KHTNPRIRAKAAISIS 214 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~s-----n~FI~e~A~~AL~~Mv~~----~s~--~kll~~L~----~~~-~hKn~~VR~~aA~~L~ 214 (297)
++.++..|+.-.... +....+.+-.||..++.. +.| ..+++.|. ... +..++..+..+..++.
T Consensus 546 -l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~ 624 (960)
T 1wa5_C 546 -TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (960)
T ss_dssp -HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666555433221 111223445555555443 333 23444443 222 2357788888888888
Q ss_pred HHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 215 ICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 215 ~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.++...+++.+..+ .+.+++.+...+.....+.+.++..++..+-...
T Consensus 625 ~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 625 AILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 88887554443333 4566666666666556677888888777666553
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.83 E-value=1.1 Score=46.34 Aligned_cols=195 Identities=9% Similarity=0.101 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLL 160 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL 160 (297)
+=.-+..++..+-|++.+..+- ...+..++..+...+ + ..|+..||.++..+++.++. .+.+. ++.++..|+
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~-~l~p~---~~~ll~~l~ 590 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL-QLKPY---ADPLLNACH 590 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH-HHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH-hcccc---HHHHHHHHH
Confidence 4455677888888887542211 133555555555555 3 46899999999999998887 66664 566665554
Q ss_pred HHhcc--ccHHHHHHHHHHHHHHHHhcCchhHHH-------HH----HhhccCC--CHHHHHHHHHHHHH---HHHhhCc
Q 022417 161 MKASQ--DKKFVCEEADRALNTMVESITPLPLLQ-------KL----KTYVKHT--NPRIRAKAAISISI---CVTKMGL 222 (297)
Q Consensus 161 ~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~~kll~-------~L----~~~~~hK--n~~VR~~aA~~L~~---~v~~~g~ 222 (297)
.-... -..-..+.+-.|+..++..+++....+ -+ ....+.. +..-+.....++.. ++.-++.
T Consensus 591 ~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~ 670 (971)
T 2x1g_F 591 ASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNT 670 (971)
T ss_dssp HHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCC
Confidence 33322 245677777888888887665322222 22 1222222 33344444444433 3333332
Q ss_pred h------------hhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCCh
Q 022417 223 E------------GMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQP 284 (297)
Q Consensus 223 ~------------~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (297)
. .+..+ .+.+++.+...+.+ .++++.+.+-.++..+-..|+.+-.+-...+-.++...+..
T Consensus 671 ~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 671 DVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT 745 (971)
T ss_dssp -------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-
T ss_pred CcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc
Confidence 1 01111 34555555555433 36788888888888877777654322234444555444443
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.75 E-value=0.38 Score=37.57 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
+..++..|++.||..+..++..|.++. . .+.+..+...+++.-..|-..|+.+++.+ |. +
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~---~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~----~-- 103 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ---D-------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG----E-- 103 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC---S-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS----H--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC---C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H--
Confidence 577888888899999988886665542 1 23455566666777788888999888876 22 1
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALN 179 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~ 179 (297)
..+..|+.-..+.+.+|+..|..||.
T Consensus 104 ----~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 ----RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12233333234667788888877764
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.68 E-value=2.9 Score=37.77 Aligned_cols=135 Identities=10% Similarity=0.122 Sum_probs=89.7
Q ss_pred CcCHHHHHHHHHHHHHHHhh----ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 79 SKDWTNVCESLNNARRFALH----HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~----h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.+=.....+|..|..+... ++.+.......+++.++.-+-+.+-.|=..+-..+..|+..+.. ..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LK 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HH
Confidence 34444445556655555432 22222233466778888888887766644444444445444333 22
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhc--CchhHH---HHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 155 LVLQLLMKASQDKKFVCEEADRALNTMVESI--TPLPLL---QKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 155 ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~--s~~kll---~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
++..++.-..+.|.=.+++.-..+..|++.- ++.+.+ +.+.....+++..||..+..++..+....|..
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444334567788899989999998874 467888 99999999999999999999999999999843
No 86
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=93.53 E-value=2.6 Score=44.65 Aligned_cols=201 Identities=8% Similarity=0.093 Sum_probs=123.7
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
++..-+-.+...++|++..-...+.+.+..++..++. +....--...+-.++-|...||+ .+-+ .++.++.+|
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~---~~~~~e~~~fL~l~~qli~~f~~-~~~~---~l~~ll~~l 785 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN---SIDMNELVDVLSFISQLIHIYKD-NMME---ITNRMLPTL 785 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH---HCCTTTHHHHHHHHHHHHHHTTT-TSHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH
Confidence 4556666667788888877777788889999988874 33334455677889999999999 5554 389999999
Q ss_pred HHHhcc-------------ccHHHHHHHHHHHHHHHHh-cCch-----------hHHHHHHhh-ccCCCHHHHHHHHHHH
Q 022417 160 LMKASQ-------------DKKFVCEEADRALNTMVES-ITPL-----------PLLQKLKTY-VKHTNPRIRAKAAISI 213 (297)
Q Consensus 160 L~Ka~~-------------sn~FI~e~A~~AL~~Mv~~-~s~~-----------kll~~L~~~-~~hKn~~VR~~aA~~L 213 (297)
+.|... .+.+++.+-=.-|..++++ +++. .++..|..| ..+..+..++.+..+|
T Consensus 786 ~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l 865 (980)
T 3ibv_A 786 LMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALV 865 (980)
T ss_dssp HHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 988622 1344555555566777774 2321 246666655 4568899999999999
Q ss_pred HHHHHhhCchh----hhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc---
Q 022417 214 SICVTKMGLEG----MKELGLVSLVQVAAGLLNDRL-----PEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSN--- 281 (297)
Q Consensus 214 ~~~v~~~g~~~----l~~~~~~~ll~~~a~~l~D~~-----pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~--- 281 (297)
.++++.||.+. ..+|-.+ +++.+-....+.+ ..+|...-.+...++..|.+.+ +.|-+|+++.
T Consensus 866 ~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g----~~~~~~l~~~~lp 940 (980)
T 3ibv_A 866 SKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG----DIYKSYLVTVYFP 940 (980)
T ss_dssp HHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTTT
T ss_pred HHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhcCC
Confidence 99999997543 3344467 7777777665554 3344444455555566665544 5788888654
Q ss_pred ---CChhhHHHHHH
Q 022417 282 ---LQPIDAQSMVK 292 (297)
Q Consensus 282 ---l~~~~a~~~~~ 292 (297)
+|+..|+...+
T Consensus 941 ~~~~~~~~~~~~~~ 954 (980)
T 3ibv_A 941 TVNFPDVMASEYLQ 954 (980)
T ss_dssp C----CCHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 45555555443
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=93.25 E-value=1.8 Score=41.91 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHhc-cCCcCHHHHHHHHHHHHHHHhhChhhhhHH--HHHHHHHHHHHhcCcch----HHHHHHHHHHHHHHHHcCC
Q 022417 70 IPCLIEG-LDSKDWTNVCESLNNARRFALHHSSLLEPN--LEKVMAVVVKAMKNPRS----ALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 70 l~~~l~~-L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~--L~~i~~~v~~~vknLRS----~Vsk~A~~tl~dLf~~l~~ 142 (297)
+..++.. +++.+...+..++..|+.|+.+..+.-... -...++.++..+++... .|.++|+-++..|...+-.
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 4566665 466788888899999999998665432111 13466777777776543 5899999999998863221
Q ss_pred CCCCcchhhH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 143 KLLDSTSDAL--DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 143 ~~md~~~~~l--d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
.-+.. ..+ ...++.|+.-..+.+.-+.+.|-.||..++..... .-.++.|...+.+++..+|..++..|
T Consensus 368 -~~~~~-~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 368 -NEDHR-QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp -CHHHH-HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred -CHHHH-HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 10110 011 12345555544455666999999999988743221 23567777888899999999999999
Q ss_pred HHHHHh
Q 022417 214 SICVTK 219 (297)
Q Consensus 214 ~~~v~~ 219 (297)
.+++..
T Consensus 446 ~nL~~~ 451 (458)
T 3nmz_A 446 RNLMAN 451 (458)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 999875
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.54 E-value=2.1 Score=45.10 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=55.1
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNP-----RSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknL-----RS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
+.+|..+-.+|-.+..++....+.... .+..++..+....... .-.|...+|.++|-+...+..+ ++.+
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-----~~~l 538 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-----WNFL 538 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-----HHHH
Confidence 468999999999999887543332222 3666666665533322 2223335777777766655541 1234
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
..++..|+....+++.-|+..|..|+..+++.|
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 555444444333334444444444444444443
No 89
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=92.42 E-value=1.1 Score=39.35 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=71.0
Q ss_pred cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 022417 185 ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 185 ~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~ 263 (297)
..+..++.+|..-++|+|+.+...+..+|..|++.-|..-..+..-..+++.+.+++. ..+++||+-...++.....+|
T Consensus 41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 3466788899888899999999999999999999999654333333333344444443 346899999999999999999
Q ss_pred ccchh--hhHHHHHHHHHhcC
Q 022417 264 TENEE--HKQEAWQSFCQSNL 282 (297)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~~l 282 (297)
..+.+ .-.+.|+.+-.+-+
T Consensus 121 ~~~~~l~~i~~~Y~~Lk~~G~ 141 (226)
T 3zyq_A 121 RNEPKYKVVQDTYQIMKVEGH 141 (226)
T ss_dssp TTCGGGHHHHHHHHHHHHHTC
T ss_pred CCCcchHHHHHHHHHHHhcCC
Confidence 77653 23477777765543
No 90
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=92.18 E-value=0.65 Score=39.24 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=72.6
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
+..++..|..-++|+|+.|...+..+|..|++.-|..--....-..+++.+.+++.. .+++||+-...++....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888888999999999999999999999885443344456666667777753 46899999999999999
Q ss_pred HHhccchhhhHHHHHHHHHhcC
Q 022417 261 NAFTENEEHKQEAWQSFCQSNL 282 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l 282 (297)
..|.... .=.+.|+.+-.+-.
T Consensus 128 ~~f~~~~-~i~~~y~~Lk~~G~ 148 (171)
T 1juq_A 128 MALPEEA-KIKDAYHMLKRQGI 148 (171)
T ss_dssp HHCTTCH-HHHHHHHHHHHTTS
T ss_pred HHcCCCc-HHHHHHHHHHHCCC
Confidence 9997643 23467776666533
No 91
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.79 E-value=6.4 Score=39.41 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=109.9
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----cCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSA----FGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~----l~~ 142 (297)
..+..++..|.+.|-..+++|...|+.|+..+++.-.... ...++.++..+++....|...|+-++..|... .+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3688999999999999999999999999987665322211 23568888899999999999999999988731 111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-----HHHHHHh-----hcc-------------
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-----LLQKLKT-----YVK------------- 199 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-----ll~~L~~-----~~~------------- 199 (297)
.+- ....++.++ .||.. .....+.+.|..||-.+..+-.... .++.|.. +..
T Consensus 128 -~I~-~~GaIp~LV-~LL~s--~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 128 -AIK-NCDGVPALV-RLLRK--ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp -HHH-HTTHHHHHH-HHHHH--CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred -HHH-HcCCHHHHH-HHHcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 110 012233333 23321 1345678888888876654211111 1233322 111
Q ss_pred CCCHHHHHHHHHHHHHHHHhh--Cchhhhh-cc-HHHHHHHHHHhcc--CCCHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKM--GLEGMKE-LG-LVSLVQVAAGLLN--DRLPEAREAARSM 255 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~--g~~~l~~-~~-~~~ll~~~a~~l~--D~~pE~R~~aRk~ 255 (297)
.....|+..++.+|.++...- +...+.+ .| .+.|+..+...+. +.+....+.+=-+
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a 264 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 124799999999999987521 1122333 23 4677777766543 3333444443333
No 92
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=91.14 E-value=4.4 Score=42.07 Aligned_cols=188 Identities=9% Similarity=0.057 Sum_probs=118.6
Q ss_pred HHHHHhccCCcC-HH--HHHHHHHHHHHHHhh-ChhhhhH--HHHHHHHHHHHHhc-Cc------------chHH-HHHH
Q 022417 70 IPCLIEGLDSKD-WT--NVCESLNNARRFALH-HSSLLEP--NLEKVMAVVVKAMK-NP------------RSAL-CKTS 129 (297)
Q Consensus 70 l~~~l~~L~s~d-W~--~~~eaL~~LRrLa~~-h~e~l~~--~L~~i~~~v~~~vk-nL------------RS~V-sk~A 129 (297)
++.++..|.+.. .+ .+..|...|-+|... +|+.+.+ ...+.++.++..+. ++ ++.+ ..+|
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feA 579 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA 579 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHH
Confidence 455666665553 32 577888888888853 4666532 11267777777776 12 3334 6699
Q ss_pred HHHHHHHHHHcCC--CCCCcchhhHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc--hhH-----------HH
Q 022417 130 IMAASDIFSAFGD--KLLDSTSDALD--NLVLQLLMKASQDKKFVCEEADRALNTMVESITP--LPL-----------LQ 192 (297)
Q Consensus 130 ~~tl~dLf~~l~~--~~md~~~~~ld--~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--~kl-----------l~ 192 (297)
+++++.|+..=++ ...... -+. ..++.|..=..+++.-|+.+|..++-.|+.+-.. .+. ++
T Consensus 580 L~ALTNLAs~~~n~~E~~r~~--Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~ 657 (778)
T 3opb_A 580 LLALTNLASSETSDGEEVCKH--IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN 657 (778)
T ss_dssp HHHHHHHHHCCSHHHHHHHHH--HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH
T ss_pred HHHHHHHhcCCcccchHHHHH--HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH
Confidence 9999999964211 000000 011 1333333334568899999999999999865332 122 66
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhC--chhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Q 022417 193 KLKTYVKHTNPRIRAKAAISISICVTKMG--LEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYN 261 (297)
Q Consensus 193 ~L~~~~~hKn~~VR~~aA~~L~~~v~~~g--~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~ 261 (297)
.|...+...+..+|+.++..|.++..... ...+.+ ....++.+...+.| .++++|..|=.++.-|.+
T Consensus 658 lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~--~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 658 ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT--KKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT--CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 77788889999999999998888854322 122333 23455555666666 799999988888877775
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=90.36 E-value=3.4 Score=41.95 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=98.5
Q ss_pred CCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-H
Q 022417 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFS-A 139 (297)
Q Consensus 61 ~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~-~ 139 (297)
.+...|=+--..++..|=+..|+.|-+|-.-||.+.+.|..-.+.. ..... --|+..+.-+.- .
T Consensus 167 ~~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~------------~~~N~---DLAvRLLCVLALDR 231 (800)
T 3oc3_A 167 RPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVDS---KLFSKIYEILVTDK 231 (800)
T ss_dssp -CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC------------CCCCT---THHHHHHHHHHHBC
T ss_pred cCCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee------------ccccH---HHHHHHHHHHHhcc
Confidence 6677886666677789999999999999999999999986522211 11111 222222221111 1
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 140 FGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 140 l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
||+ -.. |. .-.-|||.+..+|.++ .++++. +++..|..+..+..=.||-..-.-|-.+
T Consensus 232 FGD-YVS------Dq-----------VVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-- 290 (800)
T 3oc3_A 232 FND-FVD------DR-----------TVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-- 290 (800)
T ss_dssp CBB-CSS------SS-----------CBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT--
T ss_pred ccc-ccc------Ce-----------eeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH--
Confidence 222 100 01 2355899999999999 888754 5666666666677667775433222222
Q ss_pred hhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 219 KMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 219 ~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
.+-+.. ++.+++++..++.|.+-|||..|=.++.-
T Consensus 291 ---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiP 325 (800)
T 3oc3_A 291 ---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCH 325 (800)
T ss_dssp ---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTT
T ss_pred ---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhh
Confidence 111112 78999999999999999999998877653
No 94
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=89.91 E-value=3.2 Score=34.36 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=67.7
Q ss_pred CchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH-HHHhcc---CCCHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV-AAGLLN---DRLPEAREAARSMVNSMY 260 (297)
Q Consensus 186 s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~-~a~~l~---D~~pE~R~~aRk~l~~L~ 260 (297)
.+..++.+|..-++ ++|+.+...+-.+|..|++.-|..--....-..+++- +.+.+. +...+||+-...++....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 35678888887776 5999999999999999999998654334444556655 556664 334599999999999999
Q ss_pred HHhccchh--hhHHHHHHHHHh
Q 022417 261 NAFTENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~--~~~~~~~~~~~~ 280 (297)
..|....+ .=.+.|+.+-.+
T Consensus 130 ~~f~~~p~l~~i~~~Y~~Lk~~ 151 (157)
T 1elk_A 130 DAFRSSPDLTGVVTIYEDLRRK 151 (157)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHHHHc
Confidence 98875442 123566655443
No 95
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=89.70 E-value=2.8 Score=36.36 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+|+.+...+..+|..|++.-|..--.+.+-..+++.+.+++. ..++++|+-...++.....+|.
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 466788888888899999999999999999999988543233333334444444443 4578999999999999999987
Q ss_pred cchhh--hHHHHHHHHHhc
Q 022417 265 ENEEH--KQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~~--~~~~~~~~~~~~ 281 (297)
...+- -.+.|..+-.+-
T Consensus 119 ~~~~~~~i~~~y~~Lk~~G 137 (220)
T 1dvp_A 119 SSDKYQAIKDTMTILKAKG 137 (220)
T ss_dssp TCSSCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhhcC
Confidence 65432 246777776665
No 96
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.42 E-value=10 Score=39.29 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhhCh---hhh-hHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC---CCCCCcchhhHH
Q 022417 83 TNVCESLNNARRFALHHS---SLL-EPNLE--KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG---DKLLDSTSDALD 153 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~---e~l-~~~L~--~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~---~~~md~~~~~ld 153 (297)
..+++||.-|.-||.+.. +-+ ...++ ..++.+...+.+--..|-|+|+.++.-|...-. .+.++.+...-.
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 458999999999998652 222 23344 377888888888788999999999999996321 112222100001
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--------chhHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhh---
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESIT--------PLPLLQKLKTYVK--HTNPRIRAKAAISISICVTKM--- 220 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--------~~kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~--- 220 (297)
.-+..|+.=...++.=++.+|..||..+..... ..+.+..|..-+. +.+..+|..++.++.++++..
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~ 733 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN 733 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC
Confidence 113333333344666778888877765533222 1345666655444 489999999999999999732
Q ss_pred -Cchhhhhc-cHHHHHHHHHHhccC
Q 022417 221 -GLEGMKEL-GLVSLVQVAAGLLND 243 (297)
Q Consensus 221 -g~~~l~~~-~~~~ll~~~a~~l~D 243 (297)
+.+.+..+ +-.++.+++.+.+..
T Consensus 734 ~~~~~~~~~~~~~~l~~~l~~~lk~ 758 (778)
T 3opb_A 734 GTNEVYPLLQENQKLKDALNMSLKR 758 (778)
T ss_dssp TTTSCCHHHHSCHHHHHHHHHHHSS
T ss_pred CChHHHHHHhcChHHHHHHHHHHhC
Confidence 22222222 235666666665543
No 97
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.38 E-value=11 Score=33.58 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 152 LDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 152 ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
..+-+..||..|.. ++.--.+.-..+-+.++...+ ...+++.+.+-..+.+..||+-.+.++...+.+ ...
T Consensus 13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~------k~~ 86 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV------KVE 86 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH------CGG
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH------HHH
Confidence 44555677777766 332222222223332333221 245666666766779999999999999888743 122
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----h---hhhHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN----E---EHKQEAWQSFCQ 279 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~----~---~~~~~~~~~~~~ 279 (297)
-..++++++..+++|.+|.+-..+=.+...+|...-+. . +.-.+.|+.+++
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~ 144 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL 144 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 36889999999999999988776666666555443222 1 124578988765
No 98
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.30 E-value=8.1 Score=41.02 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhcc
Q 022417 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVK 199 (297)
Q Consensus 120 nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~ 199 (297)
+.-.-|-+.|..++|.+. +|... .+..++..|+ ...+..||-.|.-||..+...-+-.+++..|....+
T Consensus 589 d~~d~VRraAViaLGlI~--~g~~e------~v~rlv~~L~---~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVL--LRDYT------TVPRIVQLLS---KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CSCHHHHHHHHHHHHHHT--SSSCS------SHHHHTTTGG---GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhc--cCCHH------HHHHHHHHHH---hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 333456688999998663 45521 2445543332 246789999999999998766666789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMY 260 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~ 260 (297)
+.+..||..++.-|..+....... .. .-+..+++.+++.+.| .++.+|..+|-+.-.++
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna-~~-~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEK-LN-PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTT-TC-TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccc-cc-hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999887776665543321 11 1256777778888877 56889999998877664
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.06 E-value=2.8 Score=45.00 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=101.0
Q ss_pred cCHHHHHHHHHHHHHHHhhChh-hhhHHHHHHHHHHHHHhcCcc-----hHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 80 KDWTNVCESLNNARRFALHHSS-LLEPNLEKVMAVVVKAMKNPR-----SALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e-~l~~~L~~i~~~v~~~vknLR-----S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
-+|+..-..+-.+|.++..-.+ .-...|.+|+..+.......| --|.-+.|.++|...+-+.. . .+.++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h----~~~L~ 565 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-H----WKFLK 565 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-C----HHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-C----HHHHH
Confidence 3699999999999999864443 335678889988887776664 34444556688888887765 2 34789
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh----------HHHHHH----hhccCCCHHHHHHHHHHHHHHHHh
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP----------LLQKLK----TYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k----------ll~~L~----~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.++..|+....++++-|.+.|..|+..+++.|...- .+.-|. ....+-.+.-.......+..++..
T Consensus 566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999988888999999999999999999997531 233332 333444555555666667777777
Q ss_pred hCchh
Q 022417 220 MGLEG 224 (297)
Q Consensus 220 ~g~~~ 224 (297)
.+.+.
T Consensus 646 ~p~~~ 650 (1073)
T 3gjx_A 646 QTDQT 650 (1073)
T ss_dssp CCCHH
T ss_pred CCCcc
Confidence 77543
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.81 E-value=6 Score=39.83 Aligned_cols=174 Identities=8% Similarity=0.010 Sum_probs=97.3
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMA-VVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~-~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+.-+++.|+|.|...|..|+..|..|+. .++...-.++ .++. .|...+.+.-..|..+|.-++..|+..-|.+..+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34457888999999999999999999986 5543333232 3444 4566688899999999999999888765541111
Q ss_pred cc-hhhHHHHHHHHHHHhcc---------------ccHH--------------HHHHHHHHHHHHHHhcCchhHHHHHHh
Q 022417 147 ST-SDALDNLVLQLLMKASQ---------------DKKF--------------VCEEADRALNTMVESITPLPLLQKLKT 196 (297)
Q Consensus 147 ~~-~~~ld~ll~~LL~Ka~~---------------sn~F--------------I~e~A~~AL~~Mv~~~s~~kll~~L~~ 196 (297)
.- ...+-..+..+|.+... ..+. +++..+.++..+... ..++.|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~----~~l~~l~~ 189 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK----QTILRLLF 189 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC----HHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc----ccHHHHHH
Confidence 00 00122222333333211 0111 233334444444332 33444433
Q ss_pred h---ccCCCHHHHHHHHHHHHHHHHhhCc--hhhhhccHHHHHHHHHHhccCCCHH
Q 022417 197 Y---VKHTNPRIRAKAAISISICVTKMGL--EGMKELGLVSLVQVAAGLLNDRLPE 247 (297)
Q Consensus 197 ~---~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~~~~~~ll~~~a~~l~D~~pE 247 (297)
. ...-+..++..++.||..+.+.-.. ..+...+...++..+.....+..+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~ 245 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR 245 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH
Confidence 2 2234578999999999998774321 1122223334445555555555554
No 101
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=86.33 E-value=11 Score=37.81 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=96.4
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhC-h--hhhhHHH--HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHH-S--SLLEPNL--EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h-~--e~l~~~L--~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
+..++..| .+.+...+..|.-.|+.|+... + ..+...+ ...++.|++.+.+.-..|-+.||.+++.|...-.++
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence 55666677 3567888889999999998532 2 2222223 456888999999988999999999999998653331
Q ss_pred CCCcchhhHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHh-------cCchhHHHHHHhhccCC--CHHHH
Q 022417 144 LLDSTSDALDNLVLQLLMKASQD--------KKFVCEEADRALNTMVES-------ITPLPLLQKLKTYVKHT--NPRIR 206 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~s--------n~FI~e~A~~AL~~Mv~~-------~s~~kll~~L~~~~~hK--n~~VR 206 (297)
+.- -...++.|+.....+ ..-+...|-.+|..++.. +-....++.|...+.++ ++.++
T Consensus 390 --~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 390 --ELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp --HHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred --HHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 111 124455555444333 245666777777666543 22234677777766655 89999
Q ss_pred HHHHHHHHHHHH
Q 022417 207 AKAAISISICVT 218 (297)
Q Consensus 207 ~~aA~~L~~~v~ 218 (297)
+.++..|.++..
T Consensus 465 k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 465 RAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999998874
No 102
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=85.42 E-value=4.6 Score=38.35 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhh-hccHHHHH
Q 022417 165 QDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMK-ELGLVSLV 234 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~-~~~~~~ll 234 (297)
+.+..++..|..+|..++.+-.+.+ .++.|...+++.++.++..++..|.++...-.. ..+. .++++.++
T Consensus 13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 3456688888888988875544433 577888888999999999999999998863111 1122 24455555
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 022417 235 QVAAGLLN-DRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 235 ~~~a~~l~-D~~pE~R~~aRk~l~~L~~ 261 (297)
+. +. .+++++++.+=.+++.|-.
T Consensus 93 ~l----L~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 93 SL----LRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HH----HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HH----HhhCCCHHHHHHHHHHHHHHhc
Confidence 54 45 6788999888777766543
No 103
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=84.94 E-value=34 Score=36.04 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHHHhhChhhhhHHHHHHHHHHH-HHhc---CcchHHHHHHHHHHHHHHHHcCCCCC-----CcchhhHHHHHHHHH
Q 022417 90 NNARRFALHHSSLLEPNLEKVMAVVV-KAMK---NPRSALCKTSIMAASDIFSAFGDKLL-----DSTSDALDNLVLQLL 160 (297)
Q Consensus 90 ~~LRrLa~~h~e~l~~~L~~i~~~v~-~~vk---nLRS~Vsk~A~~tl~dLf~~l~~~~m-----d~~~~~ld~ll~~LL 160 (297)
..++.++.-+|+.+...+-+.+..++ ..+. +..=...-.|+.+++-+.+.++...+ +.....+-+++..|+
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 44566667777777664444444333 2232 12223344566666666665543111 111123444444443
Q ss_pred HHh--ccccHHHHHHHHHHHHHHHHhcC--c---hhHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 161 MKA--SQDKKFVCEEADRALNTMVESIT--P---LPLLQKLKT--YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 161 ~Ka--~~sn~FI~e~A~~AL~~Mv~~~s--~---~kll~~L~~--~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
.-. ......|+-.+-.++....++.. + ..++..+.. |..|.|+.||..++..+.++++..+. .+.. -.+
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~-~~~ 577 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVN-YTE 577 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSS-SHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH-Hhhh-HHH
Confidence 311 14678899888888888887764 3 256666667 88999999999999999999998763 3322 266
Q ss_pred HHHHHHHHhcc
Q 022417 232 SLVQVAAGLLN 242 (297)
Q Consensus 232 ~ll~~~a~~l~ 242 (297)
.+++.+..++.
T Consensus 578 ~il~~l~~lL~ 588 (980)
T 3ibv_A 578 SSLAMLGDLLN 588 (980)
T ss_dssp HHHHHTTGGGC
T ss_pred HHHHHHHHhhc
Confidence 77777777665
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=83.41 E-value=11 Score=33.17 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhhh-ccHHHHHHHHHH
Q 022417 170 VCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMKE-LGLVSLVQVAAG 239 (297)
Q Consensus 170 I~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~-~~~~~ll~~~a~ 239 (297)
+...|..+|..++..-.+. -.+|.|...+++.++.++..++..|.++...-.. ..+.+ ++++.+++.+..
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence 3444545676666443322 3578888888999999999999999999763211 22333 345666555442
Q ss_pred hccCCCHHHHHHHHHHHHHHHH
Q 022417 240 LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 240 ~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+++++++.+-.++|.|-.
T Consensus 106 ---~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 106 ---TRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp ---CCCHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHc
Confidence 4689999999999999854
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=81.51 E-value=19 Score=38.32 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=103.1
Q ss_pred HHHHHHHHhcC--cchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHH
Q 022417 110 VMAVVVKAMKN--PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKAS-----QDKKFVCEEADRALNTMV 182 (297)
Q Consensus 110 i~~~v~~~vkn--LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~-----~sn~FI~e~A~~AL~~Mv 182 (297)
+...+...+.+ .-=..--+||.++|-+.........+ ..+..+++.|+.-.. +.+.-++..+-.++....
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~---~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK---RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHH---HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHH---HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 33444444443 22333445678888776543331112 235555555544222 234445666667777666
Q ss_pred HhcC--c---hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh------hccHHHHHHHHHHhccCCCHHHHHH
Q 022417 183 ESIT--P---LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK------ELGLVSLVQVAAGLLNDRLPEAREA 251 (297)
Q Consensus 183 ~~~s--~---~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~------~~~~~~ll~~~a~~l~D~~pE~R~~ 251 (297)
..+. + ..++..|..+....++.|...+|..+..+++.-+..-.. ..-.+.+++.......+-.++.+..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 6643 2 246666677888889999999999999999986632211 1115777777788777888888887
Q ss_pred HHHHHHHHHHHhccchh----------hhHHHHHHHHH
Q 022417 252 ARSMVNSMYNAFTENEE----------HKQEAWQSFCQ 279 (297)
Q Consensus 252 aRk~l~~L~~~~~~~~~----------~~~~~~~~~~~ 279 (297)
.-.++..+-++.+...+ .-.+.|+++++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777776664432 23488999886
No 106
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.72 E-value=14 Score=39.41 Aligned_cols=150 Identities=11% Similarity=0.164 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH--HHcCCCCCCcchhhHHHHHHHHHHHhcc-cc-HHHHHHHHHHHHHH
Q 022417 106 NLEKVMAVVVKAMKNPRSALCKTSIMAASDIF--SAFGDKLLDSTSDALDNLVLQLLMKASQ-DK-KFVCEEADRALNTM 181 (297)
Q Consensus 106 ~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf--~~l~~~~md~~~~~ld~ll~~LL~Ka~~-sn-~FI~e~A~~AL~~M 181 (297)
.+..++..+....++-.|= .|.+++..-..| ..+- .+... ....+ ..++.+... .. -=||+.|..+|..|
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f--~l~~~--~~~~i-~~~v~~~L~D~q~~EVRe~Aa~tLsgl 871 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELL--QLTEE--EKNKI-LEFVVSNLYNEQFVEVRVRAASILSDI 871 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTT--TSCTT--HHHHT-HHHHTTTTTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHH--HcCHH--HHHHH-HHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 3455555555444433466 788887774444 3332 23332 22333 344444444 44 45999999999999
Q ss_pred HHhcCc-hh---HHHHHHhhc-cC-CCHHHHH---------HHHH-HHHHHHHhhCchhhhhcc------HHHHHHHHHH
Q 022417 182 VESITP-LP---LLQKLKTYV-KH-TNPRIRA---------KAAI-SISICVTKMGLEGMKELG------LVSLVQVAAG 239 (297)
Q Consensus 182 v~~~s~-~k---ll~~L~~~~-~h-Kn~~VR~---------~aA~-~L~~~v~~~g~~~l~~~~------~~~ll~~~a~ 239 (297)
+.+..+ .. ++..+.... ++ ....+++ .+|. -|..||.-.. |. +..++..++.
T Consensus 872 l~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~P------y~vP~P~w~P~~l~~La~ 945 (997)
T 1vsy_5 872 VHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFP------YVFPLPPWIPKNLSNLSS 945 (997)
T ss_dssp HHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCS------CCSSCCTHHHHHHHHHHT
T ss_pred HHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCC------CCCCCCcccHHHHHHHHH
Confidence 955415 32 333333333 21 1222222 2221 1222222111 11 5688899999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 022417 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQ 275 (297)
Q Consensus 240 ~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~ 275 (297)
..+|..| ++..+|+++..+++.+. |.|+
T Consensus 946 ~~~~~~~-i~~tvk~tlseFkrTH~-------D~W~ 973 (997)
T 1vsy_5 946 WARTSGM-TGNAAKNTISEFKKVRA-------DTWK 973 (997)
T ss_dssp TSSSCSS-HHHHTHHHHHHHHHHTS-------TTHH
T ss_pred HhCCCCc-hHHHHHHHHHHHHhccc-------hhHH
Confidence 9999777 99999999999999886 5776
No 107
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=78.53 E-value=43 Score=31.23 Aligned_cols=138 Identities=11% Similarity=0.163 Sum_probs=100.2
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhh----hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLL----EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l----~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+++.+...+.+-..+|..++|.|...|+.+. ..+...+.....+.+.+-.=...|.++..+|||..-=.+
T Consensus 168 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N----- 242 (341)
T 1upk_A 168 DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHN----- 242 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGG-----
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchH-----
Confidence 56667778888999999999999999898654 456777888888888888888889999999988732111
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-ch---
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG-LE--- 223 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~--- 223 (297)
-..|..+++...-|..+-..+++++..|+-.+--.+---|..-. +.
T Consensus 243 ------------------------------~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~ 292 (341)
T 1upk_A 243 ------------------------------FTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPIL 292 (341)
T ss_dssp ------------------------------HHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred ------------------------------HHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHH
Confidence 13467777777777777778888888887665544433333211 11
Q ss_pred hhhhccHHHHHHHHHHhccCC
Q 022417 224 GMKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~ 244 (297)
.|+..+.++++.-+.+|..|.
T Consensus 293 ~IL~~Nr~kLl~fl~~f~~d~ 313 (341)
T 1upk_A 293 DILLKNQAKLIEFLSKFQNDR 313 (341)
T ss_dssp HHHHHTHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 234457899999999999888
No 108
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=77.79 E-value=29 Score=28.84 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=78.7
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCch--hhhhccHHHHHHHHHHhc
Q 022417 165 QDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK-MGLE--GMKELGLVSLVQVAAGLL 241 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~-~g~~--~l~~~~~~~ll~~~a~~l 241 (297)
.+--+.-..+..+|..|...++.+.+=..|..+...-...|. -|..|++. +|.+ .+...+++.++.-+..++
T Consensus 15 ~D~y~aE~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi~-----rLe~i~~~~lg~~~~~~~c~am~gli~e~~~~~ 89 (166)
T 2gs4_A 15 SDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIE-----RIDQVVESESNLKIKRMKCVAMEGLIEEANEVI 89 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHH
Confidence 344556677889999999999887777777766543333333 38889999 8842 223245677777776666
Q ss_pred cC-CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHH--hcCChhhHHHHHHh
Q 022417 242 ND-RLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQ--SNLQPIDAQSMVKI 293 (297)
Q Consensus 242 ~D-~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~--~~l~~~~a~~~~~~ 293 (297)
.+ +++++|..+--+-..-.++|. -.+|..++. ..|+-..+..+|+-
T Consensus 90 ~~~~~~~vlda~li~aaq~~EhyE------IA~YgtL~a~A~~lG~~~~~~lL~~ 138 (166)
T 2gs4_A 90 ESTEKNEVRDAALIAAAQKVEHYE------IASYGTLATLAEQLGYRKAAKLLKE 138 (166)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54 478899998844443344442 467777777 77777777776653
No 109
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.20 E-value=17 Score=34.55 Aligned_cols=86 Identities=16% Similarity=0.205 Sum_probs=60.8
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN- 266 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~- 266 (297)
..+++-|......++..||+.++.++...+.+ . .+. ...+++++..+++|.++.+-..+=.+...+|......
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~----~el-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i 135 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-D----IEL-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM 135 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-C----GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-H----HHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888889999999999999888863 1 122 6888999999999999988776666666655322111
Q ss_pred ---h---hhhHHHHHHHHH
Q 022417 267 ---E---EHKQEAWQSFCQ 279 (297)
Q Consensus 267 ---~---~~~~~~~~~~~~ 279 (297)
. +.-.+.|+.+++
T Consensus 136 ~~~~~~~~~~e~~W~~m~~ 154 (386)
T 3o2t_A 136 VKSRVISELQEACWDMVSA 154 (386)
T ss_dssp HHC-CCCHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHH
Confidence 1 123478888765
No 110
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=76.63 E-value=33 Score=28.78 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=78.6
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch--hhhhccHHHHHHHHHHhcc
Q 022417 165 QDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE--GMKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~--~l~~~~~~~ll~~~a~~l~ 242 (297)
.+--+.-..+..+|..|...++.+.+=..|..+...-...|. -|..|++.+|.+ .....+++.++.-+..++.
T Consensus 22 ~Diy~aE~q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi~-----rLe~i~~~lg~~~~~~~c~am~gli~e~~~~~~ 96 (173)
T 2gyq_A 22 RDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIE-----RLDQVFKKLGQKPSGVNCPAIDGLIKEADETAG 96 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTCCSCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHHh
Confidence 445566678889999999999887777777766543333333 288899988853 2222446666666665554
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHH--hcCChhhHHHHHHh
Q 022417 243 -DRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQ--SNLQPIDAQSMVKI 293 (297)
Q Consensus 243 -D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~--~~l~~~~a~~~~~~ 293 (297)
.+++++|..+--+-..-.++|. -.+|..++. ..|+-..+..+|+-
T Consensus 97 ~~~~~~v~da~li~aaq~~EhyE------IA~YgtL~a~A~~lG~~e~~~lL~~ 144 (173)
T 2gyq_A 97 EIADKTVLDAAIVANAQAVEHYE------IARYGTLIAWAEELGHDDIVRFLTT 144 (173)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477899998844443444443 467888877 77887777777654
No 111
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=75.90 E-value=37 Score=34.45 Aligned_cols=171 Identities=10% Similarity=0.091 Sum_probs=103.0
Q ss_pred CccccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 65 DPESMIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 65 ~pe~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
.+++.+..+.+.| .+.--+.|.+|+..||.+++.+++.++.. |+.++..+.+--. -..+.|.++.|+..+|..-+.
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCc
Confidence 5566788888888 45678999999999999999998877643 6666666554433 347788888888777742111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
+.. +..- ....+ +-+..-.+.+++ ...-++.|...+.+.+-.+|..+.++|..++..-+.
T Consensus 96 ---~~~----~~~~----~~~~~------~~~~~~~d~f~~---~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 96 ---EEV----EENS----TRQSE------DLGSQFTEIFIK---QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp -----------------------------CHHHHHHHHHHH---STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred ---ccc----cccc----cccch------HHHHHHHHHHHc---CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH
Confidence 110 0000 00000 001111122222 245577788888899999999999999999865332
Q ss_pred ---hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 223 ---EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 223 ---~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+.++. ...=+..+..+|.|..--+|+.|=-++..|
T Consensus 156 ~~Q~~Il~--~p~gi~~Lv~lL~d~rE~iRneallLL~~L 193 (651)
T 3grl_A 156 QVQQIILV--SPMGVSRLMDLLADSREVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHHHH--STTHHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CcccHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 11221 112233445677787777777665555443
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=75.72 E-value=81 Score=32.91 Aligned_cols=169 Identities=11% Similarity=0.144 Sum_probs=89.7
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhH----HHHH-HHHHHHHHhcCc-----chHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEP----NLEK-VMAVVVKAMKNP-----RSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~----~L~~-i~~~v~~~vknL-----RS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+.+=+.|.=|+..|+..+.++...+.+ .+++ ++..+...-.++ -..|-...+.+++.++..-.. +.+
T Consensus 60 s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p---~~W 136 (1049)
T 3m1i_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP---QNW 136 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT---TTC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc---ccc
Confidence 345567888888999998877655532 2332 222333332223 146777788899999987433 233
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----------------------chhHHHHHHhhc-cCCCHHH
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----------------------PLPLLQKLKTYV-KHTNPRI 205 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----------------------~~kll~~L~~~~-~hKn~~V 205 (297)
++.++.++.. .. ++.-.++.+-..|..+.+-+. -..++..+..++ .+.++.+
T Consensus 137 p~ll~~L~~~----~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~ 211 (1049)
T 3m1i_C 137 PEFIPELIGS----SS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSL 211 (1049)
T ss_dssp TTHHHHHHHH----HT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHH----Hc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 3334444432 22 233345555555555553321 122344444433 2457889
Q ss_pred HHHHHHHHHHHHHhhCchhhhhccHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHH
Q 022417 206 RAKAAISISICVTKMGLEGMKELGLVSLVQVAA-GLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 206 R~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a-~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
+..+..++..++.-+....+.. ..+++.+. .++. ++++|..|=.++..+.
T Consensus 212 ~~~aL~~l~~~l~wi~~~~~~~---~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 212 IVATLESLLRYLHWIPYRYIYE---TNILELLSTKFMT--SPDTRAITLKCLTEVS 262 (1049)
T ss_dssp HHHHHHHHHHHTTTSCTHHHHS---SSHHHHHHTHHHH--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHhh---hhHHHHHHHHhCC--CHhHHHHHHHHHHHHH
Confidence 9888888887776444332222 22333333 2222 5677766665555443
No 113
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=74.94 E-value=8 Score=31.88 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=66.1
Q ss_pred CchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHH-HHHHhccCC---CHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ-VAAGLLNDR---LPEAREAARSMVNSMY 260 (297)
Q Consensus 186 s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~-~~a~~l~D~---~pE~R~~aRk~l~~L~ 260 (297)
.|..++.+|..-++ ++|+.+...+..+|..|++.-|..--....-..++. .+.+++.+. ..+||+-...++....
T Consensus 50 ~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 50 GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 35678888877666 479988888999999999999965444444455664 466666653 3479999999999999
Q ss_pred HHhccchh--hhHHHHHHHH
Q 022417 261 NAFTENEE--HKQEAWQSFC 278 (297)
Q Consensus 261 ~~~~~~~~--~~~~~~~~~~ 278 (297)
.+|....+ .=.+.|+.+.
T Consensus 130 ~~F~~~p~l~~i~~~Y~~Lk 149 (152)
T 3rru_A 130 QGFPGGVDVSEVKEVYLDLV 149 (152)
T ss_dssp TCCSSSCCCHHHHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHH
Confidence 88876543 2335665553
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=73.09 E-value=50 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHH
Q 022417 169 FVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~ 212 (297)
=|++-+..++...+....|.++++.+..-+++.|.-||+.+...
T Consensus 119 rVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 119 RVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444443
No 115
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=72.12 E-value=6.7 Score=32.08 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=51.9
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc--cHHHHHHHHHHhccC--------CCHHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL--GLVSLVQVAAGLLND--------RLPEAREAARSMVN 257 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~--~~~~ll~~~a~~l~D--------~~pE~R~~aRk~l~ 257 (297)
..++..|..-++++++.|..++.++|..||.. |.+.+... ..-.+++.+..|-.- ....||+.|+.++.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 46788888999999999999999999999864 55554331 122345555544422 23679999999988
Q ss_pred HHHH
Q 022417 258 SMYN 261 (297)
Q Consensus 258 ~L~~ 261 (297)
.|++
T Consensus 127 ll~d 130 (140)
T 1vdy_A 127 AIFS 130 (140)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8765
No 116
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=70.48 E-value=4.4 Score=40.86 Aligned_cols=72 Identities=24% Similarity=0.188 Sum_probs=52.1
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHH-HHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLV-QVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll-~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
.+++|.|. .+++-++..|..++..|.++++ +++...-...+.++ ..+..++.|.+.++|..|=.+|.-|-..
T Consensus 34 ~~i~Pll~-~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 34 DKILPVLK-DLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HTTHHHHH-HHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-HcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 35677664 3778899999999999999986 33221112234444 4578899999999999999988777543
No 117
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=69.93 E-value=47 Score=28.32 Aligned_cols=117 Identities=9% Similarity=0.100 Sum_probs=75.9
Q ss_pred HhccCCcCHHHHHHHHHH-HHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 74 IEGLDSKDWTNVCESLNN-ARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~-LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
-..+...+|=..|+.+.. ++.+...||+.+.. .+...+++-.-=+-|.|+.+. | .+.+ .-+ .
T Consensus 95 ~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~-------~i~~W~~s~~~w~rR~ai~~~--l--~~~~-~~~-----~ 157 (220)
T 2b6c_A 95 KAYVPQKAWWDSVDAWRKFFGSWVALHLTELPT-------IFALFYGAENFWNRRVALNLQ--L--MLKE-KTN-----Q 157 (220)
T ss_dssp GGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHH-------HHHHHTTCSSHHHHHHHHHTT--T--TCGG-GCC-----H
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHChHHHHH-------HHHHHHcCCCHHHHHHHHHHH--H--HHHH-CCC-----H
Confidence 344555666677777643 66666667764433 466788999999999998855 2 2233 222 3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHH
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA 210 (297)
+.++..+-.-..+...||+.+...+|..+-.. .|..+++.| ...+-.+.+++.+.
T Consensus 158 ~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~~~~v~~fl--~~~~l~~~~~r~Ai 212 (220)
T 2b6c_A 158 DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-NPQWVEELM--KELVLSPLAQREGS 212 (220)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHH--HHSCCCHHHHHHHT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh-CHHHHHHHH--hhccCCHHHHHHHH
Confidence 44544443355678899999999999998655 677777777 33345555555553
No 118
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=65.80 E-value=17 Score=29.28 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 244 RLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 244 ~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
|+..+|..|-.+|..+...|.-.+ +.+-|+.||..++...-
T Consensus 64 gnq~Ir~kA~~iY~kFK~lf~~ge--g~~fw~~~~~~~~~~~~ 104 (127)
T 1z9e_A 64 VSQVIMEKSTMLYNKFKNMFLVGE--GDSVITQVLNKSLAEQR 104 (127)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHC---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhhh
Confidence 458999999999999999996444 67999999999987653
No 119
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=64.30 E-value=61 Score=27.87 Aligned_cols=119 Identities=16% Similarity=0.208 Sum_probs=75.4
Q ss_pred hccCCcCHHHHHHHH--HHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 75 EGLDSKDWTNVCESL--NNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL--~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
..+...+|=..|+.+ ..+..+...||+.+.+ .+...+.|-+-=+-|.|+.++-. +.. ..| .
T Consensus 102 ~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~-------~l~~W~~s~~~w~rR~ai~~~l~----~~~-~~d-----~ 164 (232)
T 3jxy_A 102 ELIVTKSWWDSVDSIVPTFLGDIFLKHPELISA-------YIPKWIASDNIWLQRAAILFQLK----YKQ-KMD-----E 164 (232)
T ss_dssp HHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGG-------THHHHHHSSCHHHHHHHHHTTTT----CGG-GCC-----H
T ss_pred HHHccCCChHHHHHhhHHHHHHHHHHCHHHHHH-------HHHHHhcCCchHHHHHHHHHHHH----HHh-CCC-----H
Confidence 334445555667766 3456677777774433 45567888888899999876511 122 223 2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
+.++..+..-..+.-.||+.+...+|..+-.. .|..++..|..+ .-++.+++.+.+.|
T Consensus 165 ~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~p~~v~~fl~~~--~l~~~~~r~A~k~l 222 (232)
T 3jxy_A 165 ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-NPDVVWEYVQNN--ELAPLSKREAIKHI 222 (232)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-CHHHHHHHHHHS--CCCHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHC--CCCHHHHHHHHHhc
Confidence 33444444445678899999999999988655 777888877654 44456666665444
No 120
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=62.43 E-value=22 Score=37.84 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=86.2
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHH
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPR-SALCKTSIMAASDIFSAFGDKLLDSTSDALDNLV 156 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll 156 (297)
+..| .+...|..++.+..+|-=++.. .-..|...|...+.|.+ -.|-..|..|++-|....+. .. ..++++
T Consensus 813 s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~---~~---~~~~li 885 (997)
T 1vsy_5 813 LSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE---EQ---PLLSLI 885 (997)
T ss_dssp SCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS---HH---HHHHHH
T ss_pred CCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc---hh---hHHHHH
Confidence 5799 9999999999999877655543 33567778888899999 99999999999999866412 01 133444
Q ss_pred HHHHHHhcc------------ccHHHHHHHHHHHHHHHHhcCc----hhHHHH----HHhhccCCCHHHHHHHHHHHHH
Q 022417 157 LQLLMKASQ------------DKKFVCEEADRALNTMVESITP----LPLLQK----LKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 157 ~~LL~Ka~~------------sn~FI~e~A~~AL~~Mv~~~s~----~kll~~----L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
..+-.+... .+.--+..|--+|.++|...+. +.-+|. |...+.+ ...|+..+-..|..
T Consensus 886 ~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~-~~~i~~tvk~tlse 963 (997)
T 1vsy_5 886 ERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART-SGMTGNAAKNTISE 963 (997)
T ss_dssp HHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHH
T ss_pred HHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 443333312 1125678899999999999763 344444 4445555 33366666555555
No 121
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=57.85 E-value=39 Score=30.09 Aligned_cols=83 Identities=11% Similarity=0.185 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhcCcchHHH---HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 022417 104 EPNLEKVMAVVVKAMKNPRSALC---KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNT 180 (297)
Q Consensus 104 ~~~L~~i~~~v~~~vknLRS~Vs---k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~ 180 (297)
...|+..|..++..|..|=+.|- ..|...+.||+..|++ .+. |.++-..+|...-..=..+++..+.-++.
T Consensus 148 tqqLqstc~~lvssvqGLP~~vQdq~~~a~~~a~eL~s~fs~-a~S-----f~Dl~~~~L~qsr~~l~~~~~sld~v~d~ 221 (247)
T 1szi_A 148 TQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQATFSG-IHS-----FQDLSAGVLAQTRERIARAREALDNTVEY 221 (247)
T ss_dssp HHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGG-CCS-----GGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHh-hcc-----hhhcCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45789999999999999888775 4467789999999999 554 44555555666666677899999999999
Q ss_pred HHHhcCchhHHH
Q 022417 181 MVESITPLPLLQ 192 (297)
Q Consensus 181 Mv~~~s~~kll~ 192 (297)
+++|.+-..++.
T Consensus 222 l~~n~PL~WLVG 233 (247)
T 1szi_A 222 VAQNTPAMWLVG 233 (247)
T ss_dssp HHTCCCTTCEEE
T ss_pred HHhCCCcccccc
Confidence 999977554443
No 122
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=57.75 E-value=1.2e+02 Score=28.17 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=88.7
Q ss_pred CccccHHHHHhccCCcCHHHHHHHHHHHHHHHh----hChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 022417 65 DPESMIPCLIEGLDSKDWTNVCESLNNARRFAL----HHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA 139 (297)
Q Consensus 65 ~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~----~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~ 139 (297)
.|......+++.|.+.+=..+..+|..|+++.. |-+|++.. -|.-+ ++.+..-.- .+.....+.
T Consensus 115 sps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~L----i~vi~~~~g-------N~q~Y~L~A 183 (339)
T 3dad_A 115 QLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCL----IRVGAAADH-------NYQSYILRA 183 (339)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHH----HHHHTTSCH-------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHH----HHHHHhcCh-------HHHHHHHHH
Confidence 456667788888888888889999999998443 23344321 12222 222222211 123333444
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 140 FGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 140 l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
|+. .|+.. ..++.++ . ....+..|.+.+.++...|-+.+..+|..+|..
T Consensus 184 L~~-LM~~v-~Gm~gvv--------------------------s---~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 184 LGQ-LMLFV-DGMLGVV--------------------------A---HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHH-HTTSH-HHHHHHH--------------------------H---CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhcc-ccccchh--------------------------C---CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 444 44431 1111222 1 234455565555567777777777777777765
Q ss_pred hCch-hhhhc-----cHH---HHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHhcc
Q 022417 220 MGLE-GMKEL-----GLV---SLVQVAAGLLN---DRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 220 ~g~~-~l~~~-----~~~---~ll~~~a~~l~---D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-... .+... ..+ ...+.+...++ .++.|+..+|--+++.+....++
T Consensus 233 se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 233 SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 3211 11110 001 12445555665 68999999999999998887664
No 123
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=56.42 E-value=1.1e+02 Score=27.14 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=42.0
Q ss_pred CchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHH
Q 022417 186 TPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSM 255 (297)
Q Consensus 186 s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~ 255 (297)
+...+++.|.. -....|=.||..++..+...+...+++. +++.+...+.|.++.+|..|=..
T Consensus 100 ~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~l~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 100 KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------ALPIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------THHHHHHHHHCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------HHHHHHHHhcCCCHHHHHHHHHh
Confidence 34677888876 7789999999999998888887555432 33445555556666666555444
No 124
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=55.98 E-value=1.1e+02 Score=27.10 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=82.0
Q ss_pred HHHHHhccCC-cCHHHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDS-KDWTNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s-~dW~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+-.++.+... .| ..+++.|..+|.|+.+ .|++ +.++++.++....+.+..|-|-...-+.+.|.. ..+
T Consensus 17 v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~l----l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~----k~~- 86 (257)
T 3gs3_A 17 VVDWCNELVIASP-STKCELLAKVQETVLGSCAEL----AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV----KVE- 86 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGG----HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGG-
T ss_pred HHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhH----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH----HHH-
Confidence 3345544433 45 7999999999999986 3553 455556666667788888999888888888843 222
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHH--------HHHHHHHHhcCc----hhH---HH----HHHhhccCCCHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEAD--------RALNTMVESITP----LPL---LQ----KLKTYVKHTNPRIRAK 208 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~--------~AL~~Mv~~~s~----~kl---l~----~L~~~~~hKn~~VR~~ 208 (297)
.+..++..|..=..+.+.-+-..+- .+|..++.+-.. ..+ +. .+.....+.|..||.+
T Consensus 87 ---l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~ 163 (257)
T 3gs3_A 87 ---LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTN 163 (257)
T ss_dssp ---GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence 2334443332222243333332222 234444443221 122 22 2334567889999999
Q ss_pred HHHHHHHHHHh
Q 022417 209 AAISISICVTK 219 (297)
Q Consensus 209 aA~~L~~~v~~ 219 (297)
+.+++..+|--
T Consensus 164 ~iKF~e~vIl~ 174 (257)
T 3gs3_A 164 AIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998853
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=55.47 E-value=2e+02 Score=30.79 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=88.1
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhH----HHHHHHH-HHHHHhcC---cchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEP----NLEKVMA-VVVKAMKN---PRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~----~L~~i~~-~v~~~vkn---LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
+.+=+.+.=|+..|+..+.++...+.. .+++.+. .+.....+ .-..|-...+.+++.|+..-.. +.+++
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ 134 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPD 134 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchH
Confidence 445567777888899988877555543 2333332 22222211 2356666778899999987433 23443
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--------------------chhHHHHHHhhccC----------
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT--------------------PLPLLQKLKTYVKH---------- 200 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--------------------~~kll~~L~~~~~h---------- 200 (297)
.++.++ .++. ++.-.++.+-..|..+++-+. -..+++.+...+.+
T Consensus 135 ll~~L~-~~~~----~~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~ 209 (1204)
T 3a6p_A 135 MLIELD-TLSK----QGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKT 209 (1204)
T ss_dssp HHHHHH-HHHH----TCHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHhc----CCHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455554 3322 122335555555555544311 11233333222211
Q ss_pred ---------CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 201 ---------TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 201 ---------Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+..++..+-.++..++.-+....+... ...+++.+..++.| +++|..|-.++..+...+
T Consensus 210 ~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~-~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 210 DTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE-NCKLLEILCLLLNE--QELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT-TSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCC
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc-cchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCC
Confidence 1233444444444433332222222111 13467777777764 788888888887776544
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=54.63 E-value=1.4e+02 Score=28.06 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHH
Q 022417 83 TNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLM 161 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~ 161 (297)
..+++.|+.++.|+.| .|+++.. +++.|+....+....|=|-.+..+++.|.. ..+- +..++..|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~----fl~~il~f~~d~~~~vRk~~a~FieEa~~~----~~el----~~~~l~~L~~ 107 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDN----FLDEIIAFQADKSIEVRKFVIGFIEEACKR----DIEL----LLKLIANLNM 107 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGG----GHHHHHGGGGCSCHHHHHHHHHHHHHHHHH----CGGG----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHH----HHHHHHHhccCCcHHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHH
Confidence 4899999999999874 5665544 444555566677788888888888888863 2222 3333332222
Q ss_pred HhccccHHHHHHHH--------HHHHHHHHhcCch----h-------HHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 162 KASQDKKFVCEEAD--------RALNTMVESITPL----P-------LLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 162 Ka~~sn~FI~e~A~--------~AL~~Mv~~~s~~----k-------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
=..+.+.-|...+- .++..++.+-... . +-..+.....+.|..||.++.+++..+|--
T Consensus 108 LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 108 LLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 22243333333222 2334444432211 1 122233456788999999999999998853
No 127
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.91 E-value=67 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhCchhhh-h--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 204 RIRAKAAISISICVTKMGLEGMK-E--LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~-~--~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.||.++..+=..+..--|+.... . -.+..++--+-..-.|++|++|++=|+++...+...
T Consensus 14 ~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~li 76 (89)
T 2d9d_A 14 KVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLI 76 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 46666665555555544543322 1 135666666777779999999999999998776655
No 128
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=44.95 E-value=1.2e+02 Score=24.31 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=58.0
Q ss_pred hcC-chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 184 SIT-PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 184 ~~s-~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
|.. ...++..+......-+|.-+-.+..+++.+++..|.+-...|+ ..+.++........++++|..-.+++..-.+.
T Consensus 37 ~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~-~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 37 NISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFS-RNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp TGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHH-TTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 444 3456666666776667777777778888888988865433332 22333333333445789999999888887744
Q ss_pred -------hccchhhhHHHHHHHHHh
Q 022417 263 -------FTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 263 -------~~~~~~~~~~~~~~~~~~ 280 (297)
|+. +....+++++..
T Consensus 116 ~~~~~~vF~~---~~l~~i~~~l~~ 137 (144)
T 1sz9_A 116 NDTGLPLFEG---SALEKIEQFLIK 137 (144)
T ss_dssp GGCSSCSSCH---HHHHHHHHHHHH
T ss_pred ccCCCCCCCH---HHHHHHHHHHHh
Confidence 432 234666666654
No 129
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=39.50 E-value=3.1e+02 Score=27.66 Aligned_cols=115 Identities=9% Similarity=0.150 Sum_probs=73.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH---HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE---KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~---~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
.-+..+++.|++.|...++.+++.|+.|..+.|+.....+- .-+..++..+++-|-.+=-+|+..+.+|... +..
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~ 199 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGA 199 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHH
Confidence 44667888999999999999999999999999986654332 4667788888888876666788888887643 100
Q ss_pred CCc---chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Q 022417 145 LDS---TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES 184 (297)
Q Consensus 145 md~---~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~ 184 (297)
+.- +...|+.++..+=..-+.....+-+++-..|..+.++
T Consensus 200 iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 200 IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc
Confidence 000 0123444444433332223344555555555555444
No 130
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.58 E-value=42 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=34.0
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE 108 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~ 108 (297)
...+..++..|..+.|..++++|..|.-|+.+.++-|...+.
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r 89 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQ 89 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHH
Confidence 345667788899999999999999999999988776655443
No 131
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.46 E-value=1.2e+02 Score=24.74 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=38.3
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh-CchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKM-GLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~-g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
.++..+...+-+|+..-|..++.+|..+...+ ..+.+ ..|...+++.+-.+..| .|.+-++-=
T Consensus 44 ~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i-~~Gf~~lle~ldDl~iD-iP~a~~~la 107 (165)
T 2rg8_A 44 GVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV-EKSFDKLLKDLPELALD-TPRAPQLVG 107 (165)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH-HHHHHHHHHHHHHHHHH-CTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHhChhhccc-ccchHHHHH
Confidence 45555555555677888888888888874321 11111 23567777777777777 555554433
No 132
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=30.67 E-value=2.3e+02 Score=24.06 Aligned_cols=33 Identities=15% Similarity=-0.025 Sum_probs=27.2
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
...+..|...+.++++.+|..+.++|..++.--
T Consensus 95 ~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 95 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 346788888899999999999999998877643
No 133
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=28.21 E-value=1.8e+02 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=25.3
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
..+..|..++.++++.+|..+..+|..+|.-
T Consensus 100 ~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 100 EGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 4567777788999999999999888887764
No 134
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=27.53 E-value=70 Score=27.84 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=36.1
Q ss_pred cHHHHHHHH-HHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCC
Q 022417 229 GLVSLVQVA-AGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQ 283 (297)
Q Consensus 229 ~~~~ll~~~-a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~ 283 (297)
++..++..+ .++-.++.+|.|..|..|+..+.+.++ ..|+.|..-.+.
T Consensus 175 NlRsl~hfi~LR~~~~AQ~EIR~lA~~m~~~l~~~~P-------~~~~a~~~~~~~ 223 (232)
T 4gt9_A 175 NARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCP-------WTFEAFLKYAYK 223 (232)
T ss_dssp EHHHHHHHHHHHSSTTSCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHTCC
T ss_pred eHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCh-------HHHHHHHhhCcC
Confidence 345555544 367899999999999999999999997 467766655443
No 135
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=27.16 E-value=4.5e+02 Score=25.70 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=95.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
-..++...+... ..+.=|-..|-|..++.|++-.. .+.++...+.+=-.+|=+.|+..+-.+|+. .. .
T Consensus 31 y~~Il~~~kg~~-k~K~LaaQ~I~kffk~FP~l~~~----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~---i 98 (507)
T 3u0r_A 31 YQVILDGVKGGT-KEKRLAAQFIPKFFKHFPELADS----AINAQLDLCEDEDVSIRRQAIKELPQFATG----EN---L 98 (507)
T ss_dssp HHHHHHGGGSCH-HHHHHHHHHHHHHGGGCGGGHHH----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TC---H
T ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hh---h
Confidence 445666665543 44444556788888888886544 455667778887788877777776666633 11 1
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhcc
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELG 229 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~ 229 (297)
.-+-++|.+||. .+-.--.+.+..+|..+.. ..|.-.+..|...+.+-...+|.++-.+|..-+..++.+-+..--
T Consensus 99 ~kiaDvL~QlLq---tdd~~E~~~V~~sL~sllk-~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~ 174 (507)
T 3u0r_A 99 PRVADILTQLLQ---TDDSAEFNLVNNALLSIFK-MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEV 174 (507)
T ss_dssp HHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHH
T ss_pred hhHHHHHHHHHh---ccchHHHHHHHHHHHHHHh-cChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHH
Confidence 235566666665 3334455666666666644 344455555544333236899999988888877777754432211
Q ss_pred HHHHHHHHHHhccCCCH
Q 022417 230 LVSLVQVAAGLLNDRLP 246 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~p 246 (297)
-+-+...+.+.+.|-+.
T Consensus 175 E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 175 EELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHHHhccccH
Confidence 23445555555555433
No 136
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=26.54 E-value=37 Score=24.19 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 210 AISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 210 A~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
++.+..+++.+|.+.....-...|++.+-++..+=..|+..+|+
T Consensus 4 a~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~ 47 (68)
T 1taf_A 4 AQVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYAN 47 (68)
T ss_dssp HHHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888876654444566666666555554455555554
No 137
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.20 E-value=2e+02 Score=25.98 Aligned_cols=29 Identities=3% Similarity=-0.049 Sum_probs=19.4
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
++..+...+-+++..-|..++.+|..+++
T Consensus 46 ~v~~~i~~~le~~~~~re~~~~Ll~~L~~ 74 (339)
T 1ug3_A 46 FVRHGVESTLERSAIAREHMGQLLHQLLC 74 (339)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 44444444556677788888888888775
No 138
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.69 E-value=1.2e+02 Score=27.55 Aligned_cols=30 Identities=7% Similarity=-0.127 Sum_probs=21.4
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
.++..+...+-+|+..-|..++++|..+..
T Consensus 37 ~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 37 GVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp GHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 344555555557778888888888888874
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.41 E-value=1.5e+02 Score=28.84 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFS 138 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~ 138 (297)
|=....=|++.|-.+++|||+--. ..++ .=..|...|.+.-..|-++|+.|++.+-.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg-~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTG-GKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHS-HHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455567789999999999997432 2332 24577888999999999999999998764
No 140
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=20.66 E-value=7.5e+02 Score=25.97 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred cccHHHHHhccCCcC-------HHHHHHHH-HHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH--
Q 022417 67 ESMIPCLIEGLDSKD-------WTNVCESL-NNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI-- 136 (297)
Q Consensus 67 e~~l~~~l~~L~s~d-------W~~~~eaL-~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dL-- 136 (297)
++.+..+...+.+.. |+..+=|+ ..+++.+.+++..-...+..+...+...+.+=-..-.-.++.++|.+
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Q ss_pred ---HHHcCCCCCCcchhhHHHHHHHHHHHhccccHH--HHHHHHHHHHHHHHhcCchhHHHHHHhhc--cCCCHHHHHHH
Q 022417 137 ---FSAFGDKLLDSTSDALDNLVLQLLMKASQDKKF--VCEEADRALNTMVESITPLPLLQKLKTYV--KHTNPRIRAKA 209 (297)
Q Consensus 137 ---f~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~F--I~e~A~~AL~~Mv~~~s~~kll~~L~~~~--~hKn~~VR~~a 209 (297)
...+-+ -+... +....+.+ |+.+|-.||..+. .-.|.++-+.|.+-. ..-.+.||..+
T Consensus 470 p~~l~~l~~-~l~~~-------------~~~~~~~~~rvr~aAi~ALr~~~-~~~p~~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 470 PNSIKKIQR-FLPGQ-------------GKSLDEYSTRVQAEAIMALRNIA-KRDPRKVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp GGGHHHHHT-TSTTS-------------SSCCCCSCHHHHHHHHHTTTTGG-GTCHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred hhHHHHHHH-hhcCc-------------cccccccchHHHHHHHHHHHHhh-hhchHHHHHHHHHHhcCCCCChHHHHHH
Q ss_pred HHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 210 AISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 210 A~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...|..+..- ...+-.++...-.|.+.+++.+....+..+
T Consensus 535 ~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 535 CIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQMRSL 574 (1056)
T ss_dssp HHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHHHHH
No 141
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=20.50 E-value=4.3e+02 Score=23.04 Aligned_cols=133 Identities=16% Similarity=0.213 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
++++..++..+++===.|.|||+.-+..+...+.. ..+|- ++.+ ..+|.| +..--+-.+..+++..|..--+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl---~~kL-~vm~~k--sEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPM---LKKL-FSLLKK--SEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHH---HHHH-HHHHHH--CCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHH---HHHH-HHHHhh--cccCchHHHHHHHHhHHHHhCHH
Confidence 55667778888876678999999999999988776 44432 2222 233333 44445667788899988776553
Q ss_pred --hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 188 --LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 188 --~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
.+++|.|.....-..+++|...+..|..+..- +++ + +..+++-+.-++.+.+-+-|-.|-
T Consensus 104 ~v~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~-l----~~~v~rdi~smltskd~~Dkl~aL 165 (253)
T 2db0_A 104 LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPM-L----MASIVRDFMSMLSSKNREDKLTAL 165 (253)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHH-H----HHHHHHHHHHHTSCSSHHHHHHHH
T ss_pred HHHhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChH-H----HHHHHHHHHHHhcCCChHHHHHHH
Confidence 47899998766656899998888777666543 211 1 345566666777777755555443
Done!