BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022420
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/178 (80%), Positives = 162/178 (91%), Gaps = 1/178 (0%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLTQVK +Q IN++E+DLGISD+ASWHAKYK+SAYVYVGGIPFDLTEGDLLAVF+Q G
Sbjct: 1 MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEE 120
EIVDVNL+RDKGTGK +GFAF+AYEDQRSTILAVDNLNGA +LGRTI+VDH YKK EE
Sbjct: 61 EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120
Query: 121 EDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEK 177
EDEETR++ RE RGVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSS+W H+K
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK 178
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 257 bits (657), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 172/319 (53%), Positives = 208/319 (65%), Gaps = 33/319 (10%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLTQVKR Q IN KEA LGI +D SWHAK+KDSAYV+VGGIP+DLTEGDLLAVFAQ G
Sbjct: 1 MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEE 120
E+VDVNLVRDKGTGK +GFAF+AYEDQRSTILAVDNLNGA++LGR +RVDHV+KYKKKEE
Sbjct: 61 EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120
Query: 121 EDEETRQRMREERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRS-SRW------ 173
EDEE Q+ RE RGVC AFQ+GEC RG C++SH+EQR ANTG G ++ S +RW
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180
Query: 174 ----GHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDRRE--EKRSIRHDHREKPRED 227
H+KF S G+ RA + G QS R E + R R H ++ +D
Sbjct: 181 EPPMSHKKFPS-SAGEQRFPDRAKEENKST--GREGQSSRSEAYKDRDSRLRHSDRGSKD 237
Query: 228 HGR----REDKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDK 281
H R R +RSR R +N+ + RDEK + + DQ R D
Sbjct: 238 HDRYRHDRSPERSRGDRQRNNDRYAQG-------RDEKSERYRSEVKHDEGDQKRSRRDT 290
Query: 282 SSTG----RGDSSSHRHRE 296
S+G RG+ S R+R+
Sbjct: 291 DSSGHYERRGNEDSERYRK 309
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 81/130 (62%), Positives = 105/130 (80%), Gaps = 3/130 (2%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG++D SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY---KK 117
EIV++NLVRDK TGK +GF F+ YEDQRSTILAVDN NG +I GRTIRVDHV+ Y K
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120
Query: 118 KEEEDEETRQ 127
EE D+ TRQ
Sbjct: 121 SEEIDDVTRQ 130
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 108/136 (79%), Gaps = 1/136 (0%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YKDSA++++GG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEE 120
EIV++NLVRDK TGK +GF F+ YEDQRST+LAVDN NG +I GRTIRVDHVA Y+ +E
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQE 120
Query: 121 -EDEETRQRMREERGV 135
ED + R +E+G
Sbjct: 121 SEDVDDVTRELQEKGC 136
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 181 bits (458), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
Query: 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG 60
MNPLT+VK I +N +E LG+++ SWH++YK SA+++VGG+P++LTEGD++ VF+Q G
Sbjct: 1 MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60
Query: 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEE 120
EIV++NLVRDK TGK +GF F+ YEDQRST+LAVDN NG +I GRTIRVDHV+ Y+ +E
Sbjct: 61 EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQE 120
Query: 121 -EDEETRQRMREERGV 135
ED + R +E+G
Sbjct: 121 SEDVDDVTRELQEKGC 136
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
Query: 4 LTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV 63
+ +++I+ +N +E D S +SWH Y DSAY+Y+G + FDL E D+L VF++ GE V
Sbjct: 1 MNSIRQIERLNEQELDKPFS--SSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPV 58
Query: 64 DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEEEDE 123
D+NLVRDK TGK +GFAF+ YEDQRST+LAVDN+ ++L R +RVDHVA YK ++E E
Sbjct: 59 DINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKEKE 118
>sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IST3 PE=1 SV=1
Length = 148
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 7 VKRIQHINSKEADLGI-SDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV 65
+ +IQ IN KE GI S SWH +YKD+AY+Y+G + +LTEGD+L VF++ G VDV
Sbjct: 1 MNKIQQINDKELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDV 60
Query: 66 NLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111
L RD+ TG+ +GFA++ YEDQRSTILAVDNLNG +I GR +++DH
Sbjct: 61 ILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDH 106
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
V+VG IP++ TE L +F++ G +V LV D+ TGKP+G+ F Y+DQ + + A+ NL
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
NG + GR +RVD+ A K KEE
Sbjct: 78 NGREFSGRALRVDNAASEKNKEE 100
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ S + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 98 NGAQILGRTIR 108
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ S + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 98 NGAQILGRTIR 108
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 22 ISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81
I D + +D V+VG +P+ + E + F CG I+ V +VRDK TG +GF +
Sbjct: 273 IRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGY 332
Query: 82 VAYEDQRSTILAVDNLNGAQILGRTIRV 109
V +E+ S LA+ LN ++++GR +RV
Sbjct: 333 VLFENTDSVHLAL-KLNNSELMGRKLRV 359
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVG + +D++E DL AVFA+ G + V L D+ TG+ RGF FV E A++ L
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 98 NGAQILGRTIRVD 110
+GA+ +GR ++V+
Sbjct: 63 DGAEWMGRDLKVN 75
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98
+VGG+ + + +L F+Q GE++D ++ D+ TG+ RGF FV ++D++S A+D +N
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 99 GAQILGRTIRVDH 111
G ++ GRTI V+
Sbjct: 69 GKELDGRTITVNE 81
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 98 NGAQILGRTIRVDHVAK 114
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 98 NGAQILGRTIRVDHVAK 114
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV +PF LT DL +F++ G++V V +++DK + K +G +FV + D+ S V L
Sbjct: 12 VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRGL 71
Query: 98 NGAQILGRTIR 108
N Q+ GR I+
Sbjct: 72 NNKQLFGRAIK 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILA 93
D ++VGG+ F+ TE L VF++ G++ +V +V+D+ + + RGF FV +E+ A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 94 VDNLNGAQILGRTIRVDHVAK 114
+ +NG + GR IRVD K
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGK 84
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV +PF LT DL +F++ G++V V +++DK T K +G AF+ + D+ S +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 98 NGAQILGRTIR 108
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 98 NGAQILGRTIRVDHVAK 114
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 98 NGAQILGRTIRVDHVAK 114
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A+ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 98 NGAQILGRTIRVDHVAK 114
NG + GR IRVD K
Sbjct: 68 NGKSVDGRQIRVDQAGK 84
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV 94
+A ++VGG+P D TE + F Q G ++D L+ DK TG+PRGF FV YE++ S + A
Sbjct: 246 TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-SAVEAT 304
Query: 95 DNLNGAQILGRTIRV 109
+ I G+ + V
Sbjct: 305 MSQPYITIHGKPVEV 319
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQR 88
+++GG+ ++ T+ L F Q GE++D ++RD TG+ RGF F+ +++ +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVG + F++TE L +F G+I ++ L++D TG+ +G+ F+ + D A++ L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 98 NGAQILGRTIRVDHVAK 114
NG ++ GR +RV HV +
Sbjct: 325 NGFELAGRPMRVGHVTE 341
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51 DLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109
DL F+ G++ DV ++ D+ + + +G A+V + + +S LA+ L G ++LG I V
Sbjct: 181 DLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 238
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILA 93
D +++GG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 94 VDNLNGAQILGRTIRVDHVAK 114
+ +NG + GR IRVD K
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGK 83
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVG + + TE DL AVFA GE+ V L D+ TG+ RGFAFV + A+ L
Sbjct: 3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL 62
Query: 98 NGAQILGRTIRVD 110
+GA+ +GR +RV+
Sbjct: 63 DGAEWMGRQLRVN 75
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILA 93
D ++VGG+ FD E L VF++ G+I +V +V+D+ T + RGF FV +E+ A
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 94 VDNLNGAQILGRTIRVDHVAK 114
+ +NG + GR IRVD K
Sbjct: 64 MAGMNGKTVDGRQIRVDQAGK 84
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 22 ISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81
I D + +D V+VG +P+ + E L F CG IV V +VR+ TG RGF +
Sbjct: 271 IRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGY 330
Query: 82 VAYEDQRSTILAVDNLNGAQILGRTIRV 109
V +E+ + LA+ LN ++++GR +RV
Sbjct: 331 VLFENTDAVHLAL-KLNNSELMGRKLRV 357
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVGG+ ++TE L F G+I D+ + D + + RGFAF+ YE A+DN+
Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67
Query: 98 NGAQILGRTIRVDHVAKYKKKEE 120
N +++ GRTIRV+ + KE+
Sbjct: 68 NDSELCGRTIRVNLAKPVRVKED 90
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV +PF LT DL +F++ G++V V +++DK T + +G AF+ + D+ S +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 98 NGAQILGRTIR 108
N Q+ GR I+
Sbjct: 72 NNKQLFGRVIK 82
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G +V+V L++D+ T K RGFAFV +E A L
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKALDGKPIKVEQATK 86
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV+V L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G IV++ L++D+ T K RGFAFV +E A ++
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 70 NGKSLDGKAIKVEQATK 86
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2
SV=1
Length = 301
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVGG+ ++ + L A F G+I D+ + D T K RGFAFV +E A+DN+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 98 NGAQILGRTIRVDHVAKYKKKE 119
N +++ GRTIRV+ + KE
Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98
+VGG+ + E L F+Q GE+VD ++ D+ TG+ RGF FV ++D++S A++ +N
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70
Query: 99 GAQILGRTIRVDH 111
G + GR+I V+
Sbjct: 71 GQDLDGRSITVNE 83
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2
SV=2
Length = 301
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVGG+ ++ + L A F G+I D+ + D T K RGFAFV +E A+DN+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 98 NGAQILGRTIRVDHVAKYKKKE 119
N +++ GRTIRV+ + KE
Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
VYV IPF LT D+ + ++ G++V V +V+DK T +G AFV + D+ S +L
Sbjct: 12 VYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRSL 71
Query: 98 NGAQILGRTIR 108
N Q+ GR ++
Sbjct: 72 NNKQLFGRMVK 82
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1
SV=1
Length = 301
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVGG+ ++ + L A F G+I D+ + D T K RGFAFV +E A+DN+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 98 NGAQILGRTIRVDHVAKYKKKE 119
N +++ GRTIRV+ + KE
Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVGG+ ++ + L A F G+I D+ + D T K RGFAFV +E A+DN+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 98 NGAQILGRTIRVDHVAKYKKKE 119
N +++ GRTIRV+ + KE
Sbjct: 68 NESELFGRTIRVNLAKPMRIKE 89
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 39 YVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98
+VGG+ + + L FA GEI+D ++ D+ TG+ RGF FV + + S + A++N+N
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 99 GAQILGRTIRVDH 111
G ++ GR I V+
Sbjct: 71 GKELDGRNITVNQ 83
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+YVG + + +T+ DL VF++ G + V L D+ TG+ RGF FV E + A+ L
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 98 NGAQILGRTIRVD 110
+GA+ +GR ++V+
Sbjct: 63 DGAEWMGRVLKVN 75
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97
+++GG+ + E L AVF + G I +V L++D+ T K RGFAF+ +E+ A ++
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
Query: 98 NGAQILGRTIRVDHVAK 114
NG + G+ I+V+ K
Sbjct: 69 NGKSLHGKAIKVEQAKK 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,394,643
Number of Sequences: 539616
Number of extensions: 5541145
Number of successful extensions: 28832
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 983
Number of HSP's that attempted gapping in prelim test: 19064
Number of HSP's gapped (non-prelim): 7081
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)