Query 022420
Match_columns 297
No_of_seqs 280 out of 2225
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0126 Predicted RNA-binding 99.9 1.8E-24 3.9E-29 171.0 4.6 119 1-119 1-119 (219)
2 KOG0113 U1 small nuclear ribon 99.9 9.2E-21 2E-25 160.8 17.7 88 30-117 96-183 (335)
3 PLN03134 glycine-rich RNA-bind 99.8 2.7E-19 5.9E-24 142.4 16.5 84 32-115 31-114 (144)
4 KOG0107 Alternative splicing f 99.8 1.2E-19 2.5E-24 143.1 14.1 77 33-114 8-84 (195)
5 KOG0415 Predicted peptidyl pro 99.8 5.5E-20 1.2E-24 159.2 9.5 113 5-117 209-321 (479)
6 KOG4207 Predicted splicing fac 99.7 5.2E-17 1.1E-21 131.4 13.7 85 30-114 8-92 (256)
7 TIGR01659 sex-lethal sex-letha 99.7 4.5E-18 9.7E-23 153.9 8.4 86 30-115 102-187 (346)
8 TIGR01659 sex-lethal sex-letha 99.7 8E-17 1.7E-21 145.8 15.2 83 33-115 191-275 (346)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.2E-17 6.9E-22 150.0 11.8 82 34-115 268-349 (352)
10 PF00076 RRM_1: RNA recognitio 99.7 5.8E-17 1.3E-21 112.8 9.8 70 38-108 1-70 (70)
11 KOG0121 Nuclear cap-binding pr 99.7 2.1E-17 4.5E-22 123.9 7.3 83 30-112 31-113 (153)
12 KOG0124 Polypyrimidine tract-b 99.7 3.5E-17 7.5E-22 142.5 7.5 127 34-165 112-255 (544)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.9E-21 145.9 11.6 83 34-116 2-84 (352)
14 KOG0130 RNA-binding protein RB 99.7 8.4E-17 1.8E-21 121.7 6.5 82 31-112 68-149 (170)
15 TIGR01645 half-pint poly-U bin 99.7 2.1E-16 4.5E-21 150.8 10.7 83 32-114 104-186 (612)
16 KOG0122 Translation initiation 99.7 2.5E-16 5.4E-21 130.6 9.6 84 32-115 186-269 (270)
17 PF14259 RRM_6: RNA recognitio 99.6 2.8E-15 6.2E-20 104.5 10.0 70 38-108 1-70 (70)
18 PLN03120 nucleic acid binding 99.6 3.1E-15 6.7E-20 127.6 11.0 77 35-115 4-80 (260)
19 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-15 4.5E-20 142.8 10.3 84 30-114 84-167 (457)
20 KOG0149 Predicted RNA-binding 99.6 1.6E-15 3.4E-20 125.4 7.4 81 33-114 10-90 (247)
21 KOG0117 Heterogeneous nuclear 99.6 1.1E-14 2.3E-19 130.2 13.1 82 32-113 80-162 (506)
22 TIGR01622 SF-CC1 splicing fact 99.6 9E-15 1.9E-19 138.5 13.1 82 33-114 184-265 (457)
23 TIGR01645 half-pint poly-U bin 99.6 7.5E-15 1.6E-19 140.2 12.2 82 33-114 202-283 (612)
24 KOG0111 Cyclophilin-type pepti 99.6 8.5E-16 1.8E-20 125.5 4.7 87 32-118 7-93 (298)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9.2E-15 2E-19 140.2 12.6 82 33-114 293-374 (509)
26 TIGR01648 hnRNP-R-Q heterogene 99.6 9.6E-15 2.1E-19 139.2 11.9 78 34-112 57-135 (578)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 4.7E-14 1E-18 134.5 16.4 77 33-117 231-309 (578)
28 PLN03121 nucleic acid binding 99.6 1.3E-14 2.9E-19 121.8 10.8 77 33-113 3-79 (243)
29 PLN03213 repressor of silencin 99.6 9.8E-15 2.1E-19 131.8 10.0 79 33-115 8-88 (759)
30 KOG0105 Alternative splicing f 99.6 1.4E-14 3E-19 115.4 9.0 78 33-113 4-81 (241)
31 smart00362 RRM_2 RNA recogniti 99.6 2.7E-14 5.9E-19 98.8 9.5 72 37-110 1-72 (72)
32 KOG0148 Apoptosis-promoting RN 99.5 2E-14 4.4E-19 120.9 9.2 78 31-114 160-237 (321)
33 KOG0114 Predicted RNA-binding 99.5 6.4E-14 1.4E-18 101.4 10.1 81 34-117 17-97 (124)
34 KOG0131 Splicing factor 3b, su 99.5 9.2E-15 2E-19 116.3 6.3 81 33-113 7-87 (203)
35 TIGR01628 PABP-1234 polyadenyl 99.5 2.9E-14 6.4E-19 138.3 11.1 78 37-114 2-79 (562)
36 TIGR01628 PABP-1234 polyadenyl 99.5 5.4E-14 1.2E-18 136.5 12.8 85 33-118 283-367 (562)
37 KOG0148 Apoptosis-promoting RN 99.5 2.9E-14 6.3E-19 120.0 7.9 84 32-115 59-142 (321)
38 KOG0125 Ataxin 2-binding prote 99.5 4.7E-14 1E-18 121.6 9.2 79 34-114 95-173 (376)
39 smart00360 RRM RNA recognition 99.5 8.4E-14 1.8E-18 95.9 8.6 71 40-110 1-71 (71)
40 KOG0144 RNA-binding protein CU 99.5 2.5E-14 5.5E-19 127.3 6.2 91 30-121 119-212 (510)
41 COG0724 RNA-binding proteins ( 99.5 1.4E-13 3E-18 120.2 10.6 79 35-113 115-193 (306)
42 cd00590 RRM RRM (RNA recogniti 99.5 4.2E-13 9E-18 93.3 10.3 74 37-111 1-74 (74)
43 KOG0117 Heterogeneous nuclear 99.5 2.7E-13 5.8E-18 121.3 11.5 80 35-122 259-338 (506)
44 KOG0108 mRNA cleavage and poly 99.5 1.2E-13 2.6E-18 127.1 8.9 84 36-119 19-102 (435)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 4.2E-13 9.1E-18 127.6 11.5 78 33-115 273-351 (481)
46 KOG0145 RNA-binding protein EL 99.4 3.1E-13 6.7E-18 113.2 8.5 82 35-116 41-122 (360)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.3E-13 9.4E-18 127.6 10.6 75 34-114 1-77 (481)
48 KOG0127 Nucleolar protein fibr 99.4 5.7E-13 1.2E-17 121.8 10.7 89 31-119 288-382 (678)
49 KOG0147 Transcriptional coacti 99.4 1.6E-13 3.5E-18 125.7 6.6 82 33-114 276-357 (549)
50 KOG4208 Nucleolar RNA-binding 99.4 4.9E-13 1.1E-17 108.7 7.4 89 27-115 41-130 (214)
51 KOG0127 Nucleolar protein fibr 99.4 6.7E-13 1.5E-17 121.4 8.9 82 34-116 116-197 (678)
52 KOG0145 RNA-binding protein EL 99.4 1.6E-12 3.4E-17 109.0 10.3 82 33-114 276-357 (360)
53 KOG4212 RNA-binding protein hn 99.4 2.9E-12 6.2E-17 114.4 12.5 81 31-112 40-121 (608)
54 KOG0144 RNA-binding protein CU 99.4 5.1E-13 1.1E-17 119.1 7.3 86 33-118 32-120 (510)
55 KOG0109 RNA-binding protein LA 99.4 4.4E-13 9.6E-18 114.0 6.2 72 36-115 3-74 (346)
56 KOG0109 RNA-binding protein LA 99.4 3E-13 6.4E-18 115.0 4.9 98 10-115 53-150 (346)
57 PF13893 RRM_5: RNA recognitio 99.4 2.8E-12 6.2E-17 85.3 8.3 56 52-112 1-56 (56)
58 smart00361 RRM_1 RNA recogniti 99.4 4.4E-12 9.6E-17 88.4 8.5 61 49-109 2-69 (70)
59 KOG0123 Polyadenylate-binding 99.3 8.9E-12 1.9E-16 113.7 9.4 110 2-117 46-155 (369)
60 KOG0131 Splicing factor 3b, su 99.3 6.5E-12 1.4E-16 100.2 6.5 88 30-117 91-179 (203)
61 KOG0146 RNA-binding protein ET 99.3 5.7E-12 1.2E-16 106.1 6.1 88 28-115 278-365 (371)
62 KOG0110 RNA-binding protein (R 99.3 1.4E-11 3E-16 116.2 8.8 79 35-113 515-596 (725)
63 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.7E-11 3.6E-16 117.7 9.6 74 32-112 172-257 (509)
64 KOG0153 Predicted RNA-binding 99.2 4.5E-11 9.7E-16 104.2 8.3 82 27-114 220-302 (377)
65 KOG4206 Spliceosomal protein s 99.2 6E-11 1.3E-15 98.1 7.9 82 32-116 6-91 (221)
66 KOG0110 RNA-binding protein (R 99.1 6.3E-11 1.4E-15 111.8 6.8 90 33-122 611-700 (725)
67 KOG0116 RasGAP SH3 binding pro 99.1 5.8E-10 1.3E-14 102.3 12.5 80 32-112 285-364 (419)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.3E-10 2.8E-15 107.1 8.2 82 34-115 404-485 (940)
69 KOG0132 RNA polymerase II C-te 99.1 2.1E-10 4.4E-15 109.2 7.7 82 32-119 418-499 (894)
70 KOG4209 Splicing factor RNPS1, 99.1 2.9E-10 6.2E-15 97.1 7.5 83 30-113 96-178 (231)
71 KOG0146 RNA-binding protein ET 99.1 2.2E-10 4.8E-15 96.6 6.3 85 33-118 17-104 (371)
72 KOG0123 Polyadenylate-binding 99.1 3.6E-10 7.8E-15 103.2 8.0 75 36-116 2-76 (369)
73 KOG0533 RRM motif-containing p 99.0 8.9E-10 1.9E-14 93.9 8.7 85 32-117 80-164 (243)
74 KOG0124 Polypyrimidine tract-b 99.0 1.6E-10 3.5E-15 101.3 4.1 83 31-113 206-288 (544)
75 KOG1548 Transcription elongati 99.0 1.4E-09 3.1E-14 94.9 8.7 81 33-114 132-220 (382)
76 KOG4454 RNA binding protein (R 99.0 1.9E-10 4E-15 94.4 2.3 82 32-115 6-87 (267)
77 KOG4205 RNA-binding protein mu 99.0 6.7E-10 1.4E-14 98.4 6.0 84 34-118 96-179 (311)
78 KOG4212 RNA-binding protein hn 99.0 1.2E-09 2.5E-14 98.0 7.1 76 32-112 533-608 (608)
79 KOG4205 RNA-binding protein mu 99.0 5.2E-10 1.1E-14 99.0 4.9 80 34-114 5-84 (311)
80 KOG1995 Conserved Zn-finger pr 98.9 3.1E-08 6.8E-13 87.3 14.8 89 27-115 58-154 (351)
81 KOG0106 Alternative splicing f 98.9 1.4E-09 3E-14 90.8 4.2 71 36-114 2-72 (216)
82 KOG0226 RNA-binding proteins [ 98.9 2.1E-09 4.6E-14 90.2 4.3 94 19-112 174-267 (290)
83 KOG0147 Transcriptional coacti 98.9 7.2E-10 1.6E-14 102.1 1.5 88 30-118 174-261 (549)
84 PF04059 RRM_2: RNA recognitio 98.8 3.2E-08 6.9E-13 72.6 9.6 81 36-116 2-88 (97)
85 KOG4660 Protein Mei2, essentia 98.8 4.9E-09 1.1E-13 96.9 4.5 73 31-108 71-143 (549)
86 KOG1457 RNA binding protein (c 98.8 5.7E-08 1.2E-12 80.2 10.1 84 34-117 33-120 (284)
87 KOG4849 mRNA cleavage factor I 98.7 2.6E-08 5.6E-13 87.1 6.5 81 36-116 81-163 (498)
88 KOG0151 Predicted splicing reg 98.7 5.6E-08 1.2E-12 92.1 7.3 82 31-112 170-254 (877)
89 KOG0120 Splicing factor U2AF, 98.6 5.6E-08 1.2E-12 90.6 4.9 84 34-117 288-371 (500)
90 KOG2202 U2 snRNP splicing fact 98.6 3E-08 6.6E-13 83.6 2.8 92 50-156 83-175 (260)
91 KOG4211 Splicing factor hnRNP- 98.5 3.8E-07 8.3E-12 83.4 8.5 78 32-113 7-84 (510)
92 KOG1190 Polypyrimidine tract-b 98.5 5.6E-07 1.2E-11 80.5 8.5 74 35-113 297-371 (492)
93 PF11608 Limkain-b1: Limkain b 98.5 9.9E-07 2.1E-11 62.0 7.6 71 36-116 3-78 (90)
94 KOG4676 Splicing factor, argin 98.5 2.1E-08 4.6E-13 88.9 -1.2 75 36-115 152-226 (479)
95 KOG4206 Spliceosomal protein s 98.4 1.6E-06 3.4E-11 72.2 8.8 80 29-113 140-220 (221)
96 KOG1457 RNA binding protein (c 98.3 6.1E-07 1.3E-11 74.3 4.2 66 34-103 209-274 (284)
97 COG5175 MOT2 Transcriptional r 98.3 2.2E-06 4.8E-11 75.0 7.7 83 31-113 110-201 (480)
98 PF08777 RRM_3: RNA binding mo 98.2 1.8E-06 3.9E-11 64.8 5.2 71 36-112 2-77 (105)
99 KOG4211 Splicing factor hnRNP- 98.2 3.7E-06 8E-11 77.1 7.8 78 33-112 101-179 (510)
100 KOG0106 Alternative splicing f 98.2 8E-07 1.7E-11 74.4 3.2 71 32-110 96-166 (216)
101 KOG2314 Translation initiation 98.1 6.5E-06 1.4E-10 76.6 6.8 79 34-113 57-142 (698)
102 KOG1548 Transcription elongati 98.1 3.5E-05 7.5E-10 67.9 10.8 101 7-113 239-350 (382)
103 KOG4210 Nuclear localization s 98.1 2.1E-06 4.5E-11 75.9 3.0 81 34-115 183-264 (285)
104 KOG4676 Splicing factor, argin 98.1 7E-06 1.5E-10 73.2 6.1 80 37-117 9-91 (479)
105 KOG1855 Predicted RNA-binding 98.0 6.3E-06 1.4E-10 74.3 3.7 80 30-109 226-318 (484)
106 KOG3152 TBP-binding protein, a 97.9 5.8E-06 1.3E-10 69.9 3.0 73 34-106 73-157 (278)
107 PF08952 DUF1866: Domain of un 97.8 0.00012 2.5E-09 57.5 8.3 77 29-114 21-106 (146)
108 KOG0129 Predicted RNA-binding 97.8 5.4E-05 1.2E-09 70.0 7.0 66 30-95 365-431 (520)
109 KOG1190 Polypyrimidine tract-b 97.8 8.3E-05 1.8E-09 66.9 7.4 80 31-114 410-490 (492)
110 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.7E-05 1.4E-09 48.9 5.1 52 36-94 2-53 (53)
111 KOG0112 Large RNA-binding prot 97.8 3.1E-05 6.6E-10 75.8 4.9 80 31-116 451-532 (975)
112 KOG1365 RNA-binding protein Fu 97.7 5.5E-05 1.2E-09 67.5 5.8 82 31-113 276-360 (508)
113 KOG0105 Alternative splicing f 97.7 9.8E-05 2.1E-09 59.7 6.5 62 35-103 115-176 (241)
114 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00018 4E-09 53.2 7.3 77 35-113 6-90 (100)
115 KOG4307 RNA binding protein RB 97.7 0.00015 3.2E-09 69.3 8.1 79 33-111 864-943 (944)
116 KOG2416 Acinus (induces apopto 97.7 3.3E-05 7.1E-10 72.4 3.7 80 30-115 439-522 (718)
117 KOG1456 Heterogeneous nuclear 97.6 0.0003 6.5E-09 62.7 8.8 81 32-117 117-201 (494)
118 KOG0120 Splicing factor U2AF, 97.6 0.00017 3.8E-09 67.6 7.3 63 52-114 426-491 (500)
119 KOG0129 Predicted RNA-binding 97.5 0.00021 4.5E-09 66.3 6.3 63 34-97 258-326 (520)
120 KOG1456 Heterogeneous nuclear 97.5 0.00065 1.4E-08 60.6 8.8 79 31-114 283-362 (494)
121 KOG0115 RNA-binding protein p5 97.2 0.00061 1.3E-08 57.9 5.3 99 12-111 8-110 (275)
122 KOG0128 RNA-binding protein SA 97.1 0.00017 3.6E-09 70.5 1.5 79 35-114 736-814 (881)
123 KOG1996 mRNA splicing factor [ 97.1 0.0018 3.8E-08 56.2 6.8 65 49-113 300-365 (378)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 97.0 0.0025 5.3E-08 52.5 6.7 86 32-117 4-100 (176)
125 KOG0128 RNA-binding protein SA 96.9 6.8E-05 1.5E-09 73.1 -3.2 69 35-103 667-735 (881)
126 KOG2193 IGF-II mRNA-binding pr 96.9 0.00078 1.7E-08 61.0 3.6 74 36-116 2-77 (584)
127 PF08675 RNA_bind: RNA binding 96.9 0.0034 7.4E-08 44.3 5.7 56 35-99 9-64 (87)
128 KOG2591 c-Mpl binding protein, 96.9 0.002 4.4E-08 60.3 6.0 69 34-109 174-246 (684)
129 PF10309 DUF2414: Protein of u 96.8 0.0084 1.8E-07 40.1 6.6 54 36-97 6-62 (62)
130 KOG2068 MOT2 transcription fac 96.8 0.00064 1.4E-08 60.1 1.6 82 33-114 75-162 (327)
131 KOG1365 RNA-binding protein Fu 96.7 0.0082 1.8E-07 54.0 8.3 72 36-109 162-237 (508)
132 PF15023 DUF4523: Protein of u 96.7 0.0082 1.8E-07 46.7 7.2 75 31-113 82-160 (166)
133 KOG4307 RNA binding protein RB 96.5 0.0022 4.7E-08 61.6 3.7 82 33-115 432-514 (944)
134 KOG0112 Large RNA-binding prot 96.5 0.0006 1.3E-08 67.1 -0.0 80 32-112 369-448 (975)
135 KOG2253 U1 snRNP complex, subu 96.4 0.0021 4.5E-08 61.5 2.5 77 26-111 31-107 (668)
136 KOG2135 Proteins containing th 96.3 0.0021 4.6E-08 59.1 2.1 74 34-114 371-445 (526)
137 KOG4660 Protein Mei2, essentia 96.3 0.007 1.5E-07 56.9 5.4 86 32-117 385-475 (549)
138 PF07576 BRAP2: BRCA1-associat 96.1 0.069 1.5E-06 40.3 9.1 66 36-103 14-80 (110)
139 PF03880 DbpA: DbpA RNA bindin 96.0 0.044 9.5E-07 38.2 7.2 66 37-112 2-74 (74)
140 KOG4285 Mitotic phosphoprotein 95.9 0.034 7.3E-07 48.6 7.1 67 38-112 200-267 (350)
141 KOG4574 RNA-binding protein (c 95.6 0.0091 2E-07 58.7 3.1 76 35-116 298-375 (1007)
142 PF04847 Calcipressin: Calcipr 95.3 0.06 1.3E-06 44.5 6.6 63 48-116 8-72 (184)
143 KOG4210 Nuclear localization s 95.2 0.011 2.5E-07 52.3 2.3 77 34-111 87-164 (285)
144 KOG2318 Uncharacterized conser 94.8 0.12 2.7E-06 49.1 7.8 76 32-107 171-298 (650)
145 KOG0804 Cytoplasmic Zn-finger 94.7 0.12 2.6E-06 47.7 7.3 72 31-104 70-142 (493)
146 PF11767 SET_assoc: Histone ly 92.4 0.84 1.8E-05 31.0 6.5 55 46-109 11-65 (66)
147 KOG4483 Uncharacterized conser 92.0 0.59 1.3E-05 42.6 6.9 56 34-97 390-446 (528)
148 KOG2193 IGF-II mRNA-binding pr 91.6 0.008 1.7E-07 54.7 -5.2 78 33-113 78-155 (584)
149 PRK11634 ATP-dependent RNA hel 90.9 3.5 7.6E-05 40.9 11.9 67 37-113 488-561 (629)
150 KOG2891 Surface glycoprotein [ 88.3 0.13 2.8E-06 44.5 -0.2 68 35-102 149-247 (445)
151 PF03468 XS: XS domain; Inter 87.0 1.2 2.7E-05 33.9 4.4 56 36-94 9-74 (116)
152 KOG3263 Nucleic acid binding p 86.8 0.25 5.3E-06 39.6 0.5 28 247-274 53-80 (196)
153 KOG4019 Calcineurin-mediated s 86.8 0.52 1.1E-05 38.4 2.4 76 35-116 10-91 (193)
154 KOG0151 Predicted splicing reg 85.2 0.62 1.3E-05 45.6 2.5 7 80-86 695-701 (877)
155 KOG4410 5-formyltetrahydrofola 85.0 2.9 6.3E-05 36.6 6.2 58 35-98 330-395 (396)
156 smart00596 PRE_C2HC PRE_C2HC d 80.5 3.1 6.6E-05 28.4 3.7 61 50-113 2-63 (69)
157 PF07530 PRE_C2HC: Associated 79.8 4 8.6E-05 27.9 4.2 61 50-113 2-63 (68)
158 COG5638 Uncharacterized conser 79.1 7.7 0.00017 35.8 6.9 73 32-104 143-285 (622)
159 KOG4454 RNA binding protein (R 76.7 0.5 1.1E-05 39.7 -1.2 71 36-107 81-155 (267)
160 COG0724 RNA-binding proteins ( 75.7 3.9 8.4E-05 34.8 4.1 64 32-95 222-285 (306)
161 KOG2295 C2H2 Zn-finger protein 75.0 0.38 8.3E-06 45.6 -2.5 70 34-103 230-299 (648)
162 PF10567 Nab6_mRNP_bdg: RNA-re 73.2 8.8 0.00019 33.9 5.4 80 34-113 14-106 (309)
163 KOG3702 Nuclear polyadenylated 71.8 2 4.4E-05 41.8 1.4 74 37-111 513-586 (681)
164 KOG1295 Nonsense-mediated deca 71.5 5.5 0.00012 36.4 4.0 69 35-103 7-78 (376)
165 KOG2888 Putative RNA binding p 69.8 1.7 3.8E-05 38.7 0.4 10 77-86 160-169 (453)
166 PF00403 HMA: Heavy-metal-asso 61.6 39 0.00085 21.8 5.8 54 37-96 1-58 (62)
167 KOG0835 Cyclin L [General func 61.0 8.5 0.00018 34.5 3.0 27 75-102 171-197 (367)
168 PF15513 DUF4651: Domain of un 60.3 23 0.00049 23.7 4.2 19 50-68 9-27 (62)
169 KOG0113 U1 small nuclear ribon 58.6 31 0.00067 30.7 5.9 8 82-89 109-116 (335)
170 KOG4008 rRNA processing protei 58.4 12 0.00027 31.9 3.4 35 31-65 36-70 (261)
171 KOG4365 Uncharacterized conser 54.4 2 4.2E-05 39.9 -2.1 78 36-114 4-81 (572)
172 PRK10629 EnvZ/OmpR regulon mod 52.0 1.1E+02 0.0024 23.6 7.7 74 32-113 32-109 (127)
173 PF07292 NID: Nmi/IFP 35 domai 51.6 22 0.00048 25.6 3.4 33 80-113 1-35 (88)
174 KOG4213 RNA-binding protein La 47.9 22 0.00047 29.1 3.1 54 36-95 112-168 (205)
175 PF03439 Spt5-NGN: Early trans 47.1 33 0.00071 24.3 3.7 37 61-102 33-69 (84)
176 PRK14548 50S ribosomal protein 46.5 96 0.0021 22.1 6.0 56 38-96 23-80 (84)
177 KOG0226 RNA-binding proteins [ 46.2 10 0.00022 32.9 1.0 84 31-115 92-178 (290)
178 KOG4840 Predicted hydrolases o 45.9 30 0.00066 29.7 3.8 75 33-112 35-115 (299)
179 PRK11901 hypothetical protein; 45.4 71 0.0015 28.9 6.2 63 33-100 243-307 (327)
180 PF02714 DUF221: Domain of unk 44.3 23 0.0005 31.8 3.2 33 80-114 1-33 (325)
181 COG5193 LHP1 La protein, small 43.6 11 0.00023 34.8 0.9 61 35-95 174-244 (438)
182 KOG0156 Cytochrome P450 CYP2 s 43.6 36 0.00079 32.8 4.5 59 39-107 36-97 (489)
183 PRK11179 DNA-binding transcrip 43.2 1.6E+02 0.0035 23.1 8.2 92 3-99 37-130 (153)
184 PF12687 DUF3801: Protein of u 43.0 79 0.0017 26.6 6.0 54 50-105 45-98 (204)
185 COG2608 CopZ Copper chaperone 42.7 87 0.0019 21.2 5.2 53 36-94 4-60 (71)
186 PF09707 Cas_Cas2CT1978: CRISP 42.2 49 0.0011 23.7 3.9 47 35-84 25-71 (86)
187 KOG0921 Dosage compensation co 39.9 82 0.0018 32.7 6.3 11 81-91 1085-1095(1282)
188 PF08734 GYD: GYD domain; Int 38.5 1.5E+02 0.0032 21.3 6.2 44 50-97 23-67 (91)
189 smart00195 DSPc Dual specifici 37.2 1.2E+02 0.0026 23.0 6.0 70 37-110 7-84 (138)
190 TIGR01033 DNA-binding regulato 37.1 1.9E+02 0.0041 25.0 7.5 49 30-85 89-143 (238)
191 PF07292 NID: Nmi/IFP 35 domai 36.8 23 0.00049 25.5 1.5 24 33-56 50-73 (88)
192 COG0030 KsgA Dimethyladenosine 36.4 49 0.0011 29.0 3.8 35 35-69 95-129 (259)
193 PRK08559 nusG transcription an 35.9 1.2E+02 0.0025 24.2 5.7 35 62-101 36-70 (153)
194 KOG2888 Putative RNA binding p 35.8 21 0.00045 32.1 1.4 8 107-114 163-170 (453)
195 PF05189 RTC_insert: RNA 3'-te 35.8 1.1E+02 0.0025 22.2 5.3 48 37-84 12-64 (103)
196 COG3254 Uncharacterized conser 35.8 1.1E+02 0.0025 22.7 5.0 42 50-94 27-68 (105)
197 PRK11230 glycolate oxidase sub 35.4 1.5E+02 0.0032 28.7 7.3 50 48-98 202-255 (499)
198 TIGR03636 L23_arch archaeal ri 33.8 1.3E+02 0.0027 21.1 4.8 56 38-96 16-73 (77)
199 cd04904 ACT_AAAH ACT domain of 32.9 1.6E+02 0.0034 20.0 7.6 50 48-99 13-65 (74)
200 cd04908 ACT_Bt0572_1 N-termina 32.6 1.4E+02 0.0031 19.4 7.8 48 49-101 15-63 (66)
201 PF14401 RLAN: RimK-like ATPgr 31.6 51 0.0011 26.4 2.9 60 35-94 87-147 (153)
202 PF11411 DNA_ligase_IV: DNA li 31.1 35 0.00075 20.1 1.4 17 45-61 19-35 (36)
203 PF11823 DUF3343: Protein of u 30.8 62 0.0013 22.0 2.9 25 78-102 2-26 (73)
204 COG5507 Uncharacterized conser 30.8 56 0.0012 23.9 2.7 21 77-97 66-86 (117)
205 TIGR01873 cas_CT1978 CRISPR-as 30.7 36 0.00077 24.5 1.7 49 35-86 25-74 (87)
206 COG0225 MsrA Peptide methionin 29.4 1.2E+02 0.0026 24.9 4.6 73 37-114 59-137 (174)
207 PF00398 RrnaAD: Ribosomal RNA 29.0 49 0.0011 28.8 2.7 33 33-65 95-129 (262)
208 PRK11558 putative ssRNA endonu 28.1 82 0.0018 23.1 3.2 49 35-86 27-75 (97)
209 PRK00110 hypothetical protein; 27.9 3.2E+02 0.0069 23.7 7.4 31 31-61 90-122 (245)
210 TIGR00387 glcD glycolate oxida 27.7 1.8E+02 0.0039 27.2 6.4 51 46-97 143-197 (413)
211 PRK01178 rps24e 30S ribosomal 27.2 1.6E+02 0.0035 21.7 4.7 46 46-92 30-80 (99)
212 PRK12378 hypothetical protein; 26.7 3.3E+02 0.0071 23.5 7.2 31 31-61 87-119 (235)
213 COG0150 PurM Phosphoribosylami 26.6 16 0.00035 33.1 -0.8 48 49-100 275-322 (345)
214 COG5353 Uncharacterized protei 26.5 3.3E+02 0.0071 21.7 6.4 54 36-89 88-154 (161)
215 COG5236 Uncharacterized conser 25.9 1.9E+02 0.0041 26.4 5.7 52 48-107 263-314 (493)
216 KOG1999 RNA polymerase II tran 25.1 1.7E+02 0.0037 30.5 5.9 33 76-109 209-241 (1024)
217 cd04880 ACT_AAAH-PDT-like ACT 24.9 2.2E+02 0.0047 19.0 7.0 51 48-99 12-66 (75)
218 PF14893 PNMA: PNMA 24.7 69 0.0015 29.2 2.9 53 33-87 16-72 (331)
219 PF07237 DUF1428: Protein of u 24.6 1.4E+02 0.0029 22.3 3.9 46 52-97 25-85 (103)
220 KOG0670 U4/U6-associated splic 24.2 43 0.00092 32.6 1.4 84 212-297 114-198 (752)
221 PF12829 Mhr1: Transcriptional 23.4 1.9E+02 0.0041 21.0 4.3 52 43-98 20-72 (91)
222 COG5584 Predicted small secret 23.2 1.6E+02 0.0035 21.5 3.9 30 42-71 29-58 (103)
223 KOG3346 Phosphatidylethanolami 23.1 1.9E+02 0.0042 23.9 4.9 47 34-89 85-133 (185)
224 PF12623 Hen1_L: RNA repair, l 22.9 2E+02 0.0043 24.8 5.0 65 33-97 116-183 (245)
225 PF13037 DUF3898: Domain of un 22.7 1.3E+02 0.0028 21.5 3.2 51 48-98 32-90 (91)
226 COG5227 SMT3 Ubiquitin-like pr 22.4 3.1E+02 0.0066 19.9 5.1 70 30-100 29-101 (103)
227 PTZ00338 dimethyladenosine tra 22.3 96 0.0021 27.7 3.3 32 37-68 103-134 (294)
228 cd04878 ACT_AHAS N-terminal AC 22.2 2.2E+02 0.0048 18.1 7.3 60 37-98 2-63 (72)
229 TIGR00755 ksgA dimethyladenosi 22.2 1.1E+02 0.0023 26.4 3.5 25 37-61 96-120 (253)
230 cd06405 PB1_Mekk2_3 The PB1 do 21.7 2.9E+02 0.0063 19.3 7.5 59 42-109 15-74 (79)
231 PRK00274 ksgA 16S ribosomal RN 21.6 98 0.0021 27.1 3.2 23 36-58 106-128 (272)
232 COG3102 Uncharacterized protei 21.1 45 0.00098 27.0 0.8 25 44-68 48-72 (185)
233 KOG3424 40S ribosomal protein 21.1 2.8E+02 0.006 21.2 4.9 45 46-91 34-83 (132)
234 TIGR00110 ilvD dihydroxy-acid 21.0 5.3E+02 0.011 25.3 8.1 37 76-115 382-418 (535)
235 KOG1232 Proteins containing th 20.9 1.3E+02 0.0029 28.0 3.8 51 42-93 231-285 (511)
236 COG0079 HisC Histidinol-phosph 20.5 1.6E+02 0.0035 27.0 4.5 43 34-86 145-191 (356)
237 PF01282 Ribosomal_S24e: Ribos 20.4 3.2E+02 0.007 19.3 5.3 47 45-92 11-62 (84)
238 PF13689 DUF4154: Domain of un 20.3 1.9E+02 0.0042 22.5 4.4 60 49-113 2-61 (145)
239 PF09702 Cas_Csa5: CRISPR-asso 20.2 99 0.0021 22.9 2.4 24 31-57 60-83 (105)
240 cd04905 ACT_CM-PDT C-terminal 20.1 2.9E+02 0.0063 18.7 7.7 51 48-99 14-68 (80)
241 PF05042 Caleosin: Caleosin re 20.1 3.2E+02 0.0069 22.4 5.5 29 33-61 65-107 (174)
No 1
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.8e-24 Score=171.04 Aligned_cols=119 Identities=71% Similarity=1.199 Sum_probs=114.8
Q ss_pred CChHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEE
Q 022420 1 MNPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFA 80 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~a 80 (297)
|||++.++.|+.++++++.++.....+|+...+++.-|||||||+.+|+.+|.-+|++||+|+.|.|+.++.||+++|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCcccch
Q 022420 81 FVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKE 119 (297)
Q Consensus 81 fV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~~~~~ 119 (297)
|+.|+++.+...|+..|||..|.|+.|+|.+....+...
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~pk 119 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKKPK 119 (219)
T ss_pred EEEecCccceEEEEeccCCceecceeEEeeecccccCCc
Confidence 999999999999999999999999999999987655543
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9.2e-21 Score=160.79 Aligned_cols=88 Identities=34% Similarity=0.502 Sum_probs=82.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+...|.+||||+-|+++|+|..|+..|+.||+|+.|.||.++.||+++|||||+|+++.++..|++..+|.+|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.+......
T Consensus 176 DvERgRTv 183 (335)
T KOG0113|consen 176 DVERGRTV 183 (335)
T ss_pred Eecccccc
Confidence 98655443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2.7e-19 Score=142.44 Aligned_cols=84 Identities=30% Similarity=0.648 Sum_probs=79.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|+.||+.||+..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
+...
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8653
No 4
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.2e-19 Score=143.12 Aligned_cols=77 Identities=35% Similarity=0.541 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.-.++|||+||+..+++.+|+.+|..||+|..|+|..++ .|||||||++..+|+.|+..|+|..|.|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999999865 899999999999999999999999999999999987
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 44
No 5
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.5e-20 Score=159.23 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=103.2
Q ss_pred HHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEe
Q 022420 5 TQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY 84 (297)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f 84 (297)
+-+.+..++++.++.+.+..+.+.....+|...|||+.|++.|+.++|+-+|+.||+|..|.|+.+..||.+..||||+|
T Consensus 209 ~e~~~e~ea~~~A~iLEmvGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEF 288 (479)
T KOG0415|consen 209 EEVLAEKEAKAQAVILEMVGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEF 288 (479)
T ss_pred HHHHHHHHHHhhHhHHHHhcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeee
Confidence 33444556777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEeEEEeccCccc
Q 022420 85 EDQRSTILAVDNLNGAQILGRTIRVDHVAKYKK 117 (297)
Q Consensus 85 ~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~~~ 117 (297)
++.++|++|+.+|++..|.++.|+|.+++...+
T Consensus 289 en~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 289 ENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred cchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 999999999999999999999999999876443
No 6
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.74 E-value=5.2e-17 Score=131.36 Aligned_cols=85 Identities=32% Similarity=0.522 Sum_probs=80.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+.+...++|.|-||.+.|+.++|..+|++||.|-.|.|+.+..|..++|||||-|....+|+.||+.|+|.+|+|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
++|..
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 98754
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=4.5e-18 Score=153.95 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=80.7
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
......++|||+|||+++++++|+++|..||+|+.|.|+.+..+++++|||||+|.++++|+.||+.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34567889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 988653
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=8e-17 Score=145.79 Aligned_cols=83 Identities=31% Similarity=0.535 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eEeEEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG--RTIRVD 110 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g--~~i~V~ 110 (297)
...++|||+|||+.+++++|+++|.+||.|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.+ ++|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999999899999999999999999999999999999876 689999
Q ss_pred eccCc
Q 022420 111 HVAKY 115 (297)
Q Consensus 111 ~~~~~ 115 (297)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 88654
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=3.2e-17 Score=149.98 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=77.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
.+.+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred Cc
Q 022420 114 KY 115 (297)
Q Consensus 114 ~~ 115 (297)
..
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 54
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=5.8e-17 Score=112.79 Aligned_cols=70 Identities=41% Similarity=0.803 Sum_probs=67.1
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 38 v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
|||+|||+++++++|.++|.+||.|..|.|+.+ .++...+||||+|.+.++|++|++.|+|..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5889999999999999999999999999999999885
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.1e-17 Score=123.87 Aligned_cols=83 Identities=30% Similarity=0.545 Sum_probs=78.7
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.....++||||+||++.|+|++|.+||+++|+|..|-|-.+..+..++|||||+|.+.++|+.||.-++|+.|..++|.|
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~ 110 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRI 110 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceee
Confidence 34567899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.|.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 975
No 12
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.5e-17 Score=142.53 Aligned_cols=127 Identities=30% Similarity=0.493 Sum_probs=107.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
-.+.||||-|.+.+.++.|...|..||+|++|.+.+++.|++++|||||+|+-++.|+.|++.|||..|+|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CcccchhHHHHH----HHhhh-------------hhccccccccCCCCCCCCcceeccCCCCCCCCCCC
Q 022420 114 KYKKKEEEDEET----RQRMR-------------EERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG 165 (297)
Q Consensus 114 ~~~~~~~~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~g 165 (297)
+..+........ ....+ +...++++|+. +..|.++.....++++|||
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-----I~~C~LAr~pt~~~HkGyG 255 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-----IVKCQLARAPTGRGHKGYG 255 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-----eeeEEeeccCCCCCcccee
Confidence 665554433222 22211 45566777655 9999999999988888876
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.3e-16 Score=145.88 Aligned_cols=83 Identities=31% Similarity=0.511 Sum_probs=78.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+..+|||+|||..+++++|+++|..||+|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 14
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=8.4e-17 Score=121.66 Aligned_cols=82 Identities=35% Similarity=0.610 Sum_probs=79.0
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
.....+.|||.++...+++++|.+.|..||+|+.|+|..+.-||-.+|||+|+|++.+.|++||..|||..|.|.+|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 022420 111 HV 112 (297)
Q Consensus 111 ~~ 112 (297)
|+
T Consensus 148 w~ 149 (170)
T KOG0130|consen 148 WC 149 (170)
T ss_pred EE
Confidence 98
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=2.1e-16 Score=150.76 Aligned_cols=83 Identities=37% Similarity=0.628 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||+|||+.+++++|.++|.+||.|..|.|+.+..+++++|||||+|.+.++|+.||+.|||..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
...
T Consensus 184 p~~ 186 (612)
T TIGR01645 184 PSN 186 (612)
T ss_pred ccc
Confidence 543
No 16
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.5e-16 Score=130.59 Aligned_cols=84 Identities=36% Similarity=0.499 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
-.++.+|-|.||+.++++.+|.+||.+||.|..|.|+.++.||.++|||||.|.+.++|++||..|||+-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
+.|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9764
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.8e-15 Score=104.53 Aligned_cols=70 Identities=39% Similarity=0.719 Sum_probs=64.7
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 38 v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
|||+|||+.+++++|.++|..||.|..|.++.++. +..+++|||+|.++++|..|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.1e-15 Score=127.63 Aligned_cols=77 Identities=23% Similarity=0.420 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
.++|||+|||+.+++++|+++|+.||+|..|.|+.+.. ++|||||+|.++++|+.|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998753 4799999999999999999 6999999999999999874
Q ss_pred c
Q 022420 115 Y 115 (297)
Q Consensus 115 ~ 115 (297)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.61 E-value=2.1e-15 Score=142.81 Aligned_cols=84 Identities=30% Similarity=0.532 Sum_probs=78.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+..+|||+|||..+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|++|| .|+|..|.|++|.|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v 162 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIV 162 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEE
Confidence 44566889999999999999999999999999999999999989999999999999999999999 69999999999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++..
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 88654
No 20
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.6e-15 Score=125.39 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=74.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
...++||||+|+|.|..+.|..+|++||+|++..|+.|+.+++++||+||+|.+.++|..|+ +-.+..|+|+...|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc-~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC-KDPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh-cCCCCcccccccccchh
Confidence 34579999999999999999999999999999999999999999999999999999999999 55667899999888876
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 54
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.1e-14 Score=130.20 Aligned_cols=82 Identities=30% Similarity=0.511 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTIRVD 110 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i~V~ 110 (297)
.+-.+.||||.||.++.|++|..||++.|+|-++.|+.++.+|.++|||||+|.+.+.|+.||+.||+++|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 355789999999999999999999999999999999999999999999999999999999999999999996 8888887
Q ss_pred ecc
Q 022420 111 HVA 113 (297)
Q Consensus 111 ~~~ 113 (297)
.+.
T Consensus 160 ~Sv 162 (506)
T KOG0117|consen 160 VSV 162 (506)
T ss_pred Eee
Confidence 754
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=9e-15 Score=138.46 Aligned_cols=82 Identities=34% Similarity=0.658 Sum_probs=78.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+...+|||+|||..+++++|.++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+||..|||..|.|++|+|.++
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 34689999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 74
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=7.5e-15 Score=140.20 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
...++|||+|||+.+++++|+++|+.||.|+.|.|+.+..+++++|||||+|.+.++|.+||+.||+..|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 75
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.5e-16 Score=125.46 Aligned_cols=87 Identities=37% Similarity=0.597 Sum_probs=82.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.....|||||+|...+++.-|...|-+||.|+.|.|+.+..+++++|||||+|...++|.+||..||+.+|.|+.|.|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccc
Q 022420 112 VAKYKKK 118 (297)
Q Consensus 112 ~~~~~~~ 118 (297)
|.|.+.+
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9876543
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.59 E-value=9.2e-15 Score=140.22 Aligned_cols=82 Identities=27% Similarity=0.547 Sum_probs=77.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
....+|||+|||+.+++++|.++|..||.|..|.|+.+..++.++|||||+|.+.++|..||+.|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=9.6e-15 Score=139.18 Aligned_cols=78 Identities=36% Similarity=0.561 Sum_probs=71.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEeEEEec
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i~V~~~ 112 (297)
..++|||+|||+++++++|.++|++||.|..|.|+.+ .+++++|||||+|.+.++|++||+.||+.+|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 69999999999999999999999999999885 676666543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=4.7e-14 Score=134.49 Aligned_cols=77 Identities=29% Similarity=0.472 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC--GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...++|||+||++.+++++|+++|++| |.|+.|.++ ++||||+|.+.++|++||+.||+.+|.|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 999999876 3599999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9977543
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=121.82 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=70.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+..++|||+||++.+|+++|++||+.||+|..|.|+.+. ...+||||+|.++++|+.|| .|+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 456899999999999999999999999999999999874 34589999999999999999 89999999999999875
Q ss_pred c
Q 022420 113 A 113 (297)
Q Consensus 113 ~ 113 (297)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=9.8e-15 Score=131.81 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCH--HHHHHHHHHhCCceeCCeEeEEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ--RSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
....+||||||++.+++++|..+|..||.|..|.|+. .+| +|||||+|... .++.+||..|||..++|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4567999999999999999999999999999999994 466 99999999987 78999999999999999999999
Q ss_pred eccCc
Q 022420 111 HVAKY 115 (297)
Q Consensus 111 ~~~~~ 115 (297)
.|.+.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 98764
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.4e-14 Score=115.44 Aligned_cols=78 Identities=31% Similarity=0.524 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
..+++|||+|||.++.+.+|++||.+||.|..|.|..- -.+.+||||+|++..+|+.||..-+|..++|..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35689999999999999999999999999999987643 234689999999999999999999999999999999976
Q ss_pred c
Q 022420 113 A 113 (297)
Q Consensus 113 ~ 113 (297)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 3
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=2.7e-14 Score=98.81 Aligned_cols=72 Identities=40% Similarity=0.774 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
+|||+|||..+++.+|.++|.+||.|..|.++.+. +.+.++|||+|.+.+.|+.|+..|++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 6788999999999999999999999999999999873
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2e-14 Score=120.91 Aligned_cols=78 Identities=31% Similarity=0.523 Sum_probs=73.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
..++.++||||||+..+++++|.+.|+.||.|.+|.|..+ +|||||.|+++++|..||..||+++|.|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4567899999999999999999999999999999999987 5999999999999999999999999999999999
Q ss_pred eccC
Q 022420 111 HVAK 114 (297)
Q Consensus 111 ~~~~ 114 (297)
|-+.
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 8654
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=6.4e-14 Score=101.39 Aligned_cols=81 Identities=28% Similarity=0.447 Sum_probs=74.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
....|||.|||+.+|.+++.++|.+||.|..|.|-..+.| +|-|||.|++..+|.+|+..|+|..+.++.|.|-+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4578999999999999999999999999999999876554 8999999999999999999999999999999999987
Q ss_pred Cccc
Q 022420 114 KYKK 117 (297)
Q Consensus 114 ~~~~ 117 (297)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6544
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.54 E-value=9.2e-15 Score=116.29 Aligned_cols=81 Identities=28% Similarity=0.548 Sum_probs=77.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
....||||+||+..++++.|.++|-+.|+|+.|+|+.+..+++++|||||+|.++++|+-||+.||...|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 022420 113 A 113 (297)
Q Consensus 113 ~ 113 (297)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=2.9e-14 Score=138.33 Aligned_cols=78 Identities=26% Similarity=0.507 Sum_probs=75.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
+|||+|||.++|+++|.++|.+||.|..|.|+.+..+++++|||||+|.+.++|++||..|++..|.|++|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999998999999999999999999999999999999999999998753
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=5.4e-14 Score=136.47 Aligned_cols=85 Identities=25% Similarity=0.518 Sum_probs=79.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
....+|||+||+..+++++|.++|++||.|+.|.|+.+ .++.++|||||+|.+.++|.+||..|||..|.|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999998 58999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 022420 113 AKYKKK 118 (297)
Q Consensus 113 ~~~~~~ 118 (297)
......
T Consensus 362 ~~k~~~ 367 (562)
T TIGR01628 362 QRKEQR 367 (562)
T ss_pred cCcHHH
Confidence 765543
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.9e-14 Score=119.95 Aligned_cols=84 Identities=29% Similarity=0.546 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
......|||+-|...++.+.|++.|.+||+|.+++|++|..|++++||+||.|...++|+.||..|||.-|+++.|...|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 33456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
|...
T Consensus 139 ATRK 142 (321)
T KOG0148|consen 139 ATRK 142 (321)
T ss_pred cccC
Confidence 8743
No 38
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=4.7e-14 Score=121.63 Aligned_cols=79 Identities=29% Similarity=0.550 Sum_probs=73.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
..+.|+|.|||+...+.||..+|.+||+|.+|.|+.+. --+|||+||+|++.++|++|-++|||+.|.|++|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45799999999999999999999999999999999873 4579999999999999999999999999999999999877
Q ss_pred C
Q 022420 114 K 114 (297)
Q Consensus 114 ~ 114 (297)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 4
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=8.4e-14 Score=95.94 Aligned_cols=71 Identities=45% Similarity=0.795 Sum_probs=66.9
Q ss_pred EeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 40 VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 40 V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
|+|||..+++++|..+|.+||.|..|.|+.+..++.+++||||+|.+.+.|..|+..|++..|.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999999873
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.5e-14 Score=127.27 Aligned_cols=91 Identities=27% Similarity=0.513 Sum_probs=81.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce-eCC--eE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ-ILG--RT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-l~g--~~ 106 (297)
...++..+|||+-|+..++|.+|.++|.+||.|++|.|+.+. .+.++|||||+|++.+.|..||+.|||.. +.| .+
T Consensus 119 er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 119 ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 445668899999999999999999999999999999999986 78999999999999999999999999976 444 68
Q ss_pred eEEEeccCcccchhH
Q 022420 107 IRVDHVAKYKKKEEE 121 (297)
Q Consensus 107 i~V~~~~~~~~~~~~ 121 (297)
|.|.||.+.+.+.-+
T Consensus 198 LVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 198 LVVKFADTQKDKDGK 212 (510)
T ss_pred eEEEecccCCCchHH
Confidence 999999988776543
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=120.24 Aligned_cols=79 Identities=43% Similarity=0.802 Sum_probs=76.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
..+|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||+.|++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999999999965
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=4.2e-13 Score=93.31 Aligned_cols=74 Identities=43% Similarity=0.791 Sum_probs=68.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
+|+|+|||+.+++++|..+|..||.|..+.++.+..+ .+.++|||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987644 7789999999999999999999999999999999863
No 43
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.7e-13 Score=121.32 Aligned_cols=80 Identities=28% Similarity=0.446 Sum_probs=73.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
.+.|||.||+.+||++.|+++|++||.|..|+.+.| ||||.|.+.++|.+||+.|||++|.|.+|.|.+|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 469999999999999999999999999999988754 899999999999999999999999999999999998
Q ss_pred cccchhHH
Q 022420 115 YKKKEEED 122 (297)
Q Consensus 115 ~~~~~~~~ 122 (297)
..+++...
T Consensus 331 ~~k~k~~r 338 (506)
T KOG0117|consen 331 VDKKKKER 338 (506)
T ss_pred hhhhccch
Confidence 77665544
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=127.08 Aligned_cols=84 Identities=39% Similarity=0.752 Sum_probs=80.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
..|||||||+.+++++|..+|+..|.|..++++.|..||+++||||++|.+.+.|+.|+..|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccch
Q 022420 116 KKKE 119 (297)
Q Consensus 116 ~~~~ 119 (297)
+...
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=4.2e-13 Score=127.64 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
+++++|||+||++ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|++|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998764 68999999999999999999999999999999998
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
+...
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 7543
No 46
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.1e-13 Score=113.22 Aligned_cols=82 Identities=32% Similarity=0.534 Sum_probs=77.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
.+.|+|--||.++|+++|+.+|...|+|++|+++.|+.+|++.||+||.|-++++|++||..|||..|..+.|+|.||.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q 022420 115 YK 116 (297)
Q Consensus 115 ~~ 116 (297)
..
T Consensus 121 Ss 122 (360)
T KOG0145|consen 121 SS 122 (360)
T ss_pred Ch
Confidence 43
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=4.3e-13 Score=127.55 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh--CCceeCCeEeEEEe
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL--NGAQILGRTIRVDH 111 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~l~g~~i~V~~ 111 (297)
|+.+|||+|||+.+++++|.++|++||.|..|.|+.+ ++||||+|++.++|+.||..| ++..|.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5789999999999999999999999999999998854 589999999999999999864 78899999999999
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.7e-13 Score=121.84 Aligned_cols=89 Identities=29% Similarity=0.511 Sum_probs=79.0
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh-----CC-ceeCC
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL-----NG-AQILG 104 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-----~g-~~l~g 104 (297)
......||||.|||+++|+++|.++|.+||+|.++.|+.++.|+.++|.|||.|.++.+|+.||+.. .| ..|.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3445589999999999999999999999999999999999999999999999999999999999765 23 67899
Q ss_pred eEeEEEeccCcccch
Q 022420 105 RTIRVDHVAKYKKKE 119 (297)
Q Consensus 105 ~~i~V~~~~~~~~~~ 119 (297)
+.|+|..+-+.+...
T Consensus 368 R~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 368 RLLKVTLAVTRKEAA 382 (678)
T ss_pred cEEeeeeccchHHHH
Confidence 999999887655443
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.43 E-value=1.6e-13 Score=125.73 Aligned_cols=82 Identities=33% Similarity=0.651 Sum_probs=76.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.|...|||+||.+++++.+|..+|++||.|..|.++.+..||.++||+||+|.+.+.|.+|+++|||.+|.|+.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34455999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 356 ~~ 357 (549)
T KOG0147|consen 356 TE 357 (549)
T ss_pred ee
Confidence 53
No 50
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.41 E-value=4.9e-13 Score=108.70 Aligned_cols=89 Identities=25% Similarity=0.453 Sum_probs=81.0
Q ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQC-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 27 ~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
...+.......+||..||..+.+.+|..+|.+| |.|..+.+..+..||.++|||||+|++++.|+-|.+.||++.|.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 334556667889999999999999999999988 7888888889999999999999999999999999999999999999
Q ss_pred EeEEEeccCc
Q 022420 106 TIRVDHVAKY 115 (297)
Q Consensus 106 ~i~V~~~~~~ 115 (297)
.|.|.+.++.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999998876
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=6.7e-13 Score=121.41 Aligned_cols=82 Identities=30% Similarity=0.559 Sum_probs=75.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.+.|+|.||||.+...+|+.+|+.||.|..|.|+... .++.+|||||+|....+|..||+.||+..|.|++|-|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 37899999999999999999999999999999999766 66777999999999999999999999999999999999986
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+..
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 543
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.6e-12 Score=109.02 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=77.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
...+.|||=||.+++.+.-|.++|.+||.|..|+|+.|..+++.+||+||...+.++|..||..|||..|.++.|.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
..
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 43
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=2.9e-12 Score=114.45 Aligned_cols=81 Identities=30% Similarity=0.471 Sum_probs=74.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.......|||+|||+++.|++|++||. +.|+|++|.|+.+. +++++|+|.|||++++.+++|++.||.+.|.|++|+|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 334456799999999999999999997 78999999999985 8999999999999999999999999999999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.-.
T Consensus 119 KEd 121 (608)
T KOG4212|consen 119 KED 121 (608)
T ss_pred ecc
Confidence 754
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.1e-13 Score=119.07 Aligned_cols=86 Identities=27% Similarity=0.557 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce-eCC--eEeEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ-ILG--RTIRV 109 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-l~g--~~i~V 109 (297)
.+..+|||+.||..|+|.+|+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456689999999999999999999999999999999999999999999999999999999999999865 444 68899
Q ss_pred EeccCcccc
Q 022420 110 DHVAKYKKK 118 (297)
Q Consensus 110 ~~~~~~~~~ 118 (297)
.+|......
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 988765443
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=4.4e-13 Score=113.97 Aligned_cols=72 Identities=28% Similarity=0.575 Sum_probs=68.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
.+|||+|||..+++.+|..||++||+|++|.|+++ |+||..++...|+.||..||+..|+|..|+|+-++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999965 8999999999999999999999999999999988765
No 56
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=3e-13 Score=115.03 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=83.2
Q ss_pred hhhhhhhhhccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHH
Q 022420 10 IQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRS 89 (297)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 89 (297)
|..+..-++....+.....+.+.+.+++|+|+||.+.++..+|.+.|.+||+|.+|.|+. +|+||.|.-.++
T Consensus 53 irNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~ed 124 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAED 124 (346)
T ss_pred HhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccc
Confidence 444444444444444555556678999999999999999999999999999999999995 489999999999
Q ss_pred HHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 90 TILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 90 a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
|..||..|++++|.|++|+|+++...
T Consensus 125 a~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 125 AVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999999999998653
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=2.8e-12 Score=85.28 Aligned_cols=56 Identities=34% Similarity=0.681 Sum_probs=50.7
Q ss_pred HHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 52 LLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 52 L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
|.++|++||+|..|.+.... .++|||+|.+.++|..|+..|||..|.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999887653 589999999999999999999999999999999985
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=4.4e-12 Score=88.40 Aligned_cols=61 Identities=26% Similarity=0.465 Sum_probs=54.7
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeecCCC--CCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 49 EGDLLAVFA----QCGEIVDVN-LVRDKGT--GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 49 ~~~L~~~F~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+++|.++|. +||.|..|. |+.++.+ +.++|||||+|.+.++|.+||..|||..|.|++|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 6666555 889999999999999999999999999999999986
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.9e-12 Score=113.72 Aligned_cols=110 Identities=20% Similarity=0.392 Sum_probs=86.1
Q ss_pred ChHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEE
Q 022420 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~af 81 (297)
+|..+..++.+++...+...+.- +.....+...|||.||++.++...|.++|+.||+|++|+|+.+. .| ++|| |
T Consensus 46 ~~~da~~A~~~~n~~~~~~~~~r---im~s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-F 119 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVLKGKPIR---IMWSQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-F 119 (369)
T ss_pred CHHHHHHHHHHcCCcccCCcEEE---eehhccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-E
Confidence 45566666666664444333222 11112233349999999999999999999999999999999986 44 9999 9
Q ss_pred EEecCHHHHHHHHHHhCCceeCCeEeEEEeccCccc
Q 022420 82 VAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKK 117 (297)
Q Consensus 82 V~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~~~ 117 (297)
|+|++++.|.+||+.|||..+.++.|.|........
T Consensus 120 V~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 120 VQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred EEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 999999999999999999999999999988765443
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=6.5e-12 Score=100.19 Aligned_cols=88 Identities=26% Similarity=0.491 Sum_probs=78.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.+...+..|||+||.+.+++..|.+.|+.||.|... .|+.+..|+.++||+||.|.+.+.+.+||..|||..+.+++|.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 344455789999999999999999999999988664 7888888999999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.....
T Consensus 171 v~ya~k~~~ 179 (203)
T KOG0131|consen 171 VSYAFKKDT 179 (203)
T ss_pred EEEEEecCC
Confidence 999865443
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.7e-12 Score=106.08 Aligned_cols=88 Identities=20% Similarity=0.417 Sum_probs=81.7
Q ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 28 WHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 28 ~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
.+-..++.+.|||=.||.+..+.+|..+|-.||.|++.+|..|..|+.+++|+||.|.+..+|+.||..|||..|+-+.|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCc
Q 022420 108 RVDHVAKY 115 (297)
Q Consensus 108 ~V~~~~~~ 115 (297)
+|....+.
T Consensus 358 KVQLKRPk 365 (371)
T KOG0146|consen 358 KVQLKRPK 365 (371)
T ss_pred hhhhcCcc
Confidence 99875543
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=116.18 Aligned_cols=79 Identities=23% Similarity=0.441 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.++|||.||++.++.+.|..+|..+|.|+.|.|...+.. -.+.|||||+|.+.++|+.|++.|+|+.|.|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988765422 13569999999999999999999999999999999999
Q ss_pred cc
Q 022420 112 VA 113 (297)
Q Consensus 112 ~~ 113 (297)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 63
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=1.7e-11 Score=117.73 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=61.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccC------------CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQC------------GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~------------G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
.....+|||+|||+.+|+++|.++|..| +.|..|.+. ..+|||||+|.+.++|+.|| .|+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3456799999999999999999999875 234444333 34799999999999999999 7999
Q ss_pred ceeCCeEeEEEec
Q 022420 100 AQILGRTIRVDHV 112 (297)
Q Consensus 100 ~~l~g~~i~V~~~ 112 (297)
..|.|.+|+|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999999754
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.5e-11 Score=104.20 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=71.9
Q ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh-CCceeCCe
Q 022420 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL-NGAQILGR 105 (297)
Q Consensus 27 ~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~l~g~ 105 (297)
.+.++...-.||||++|...+++.+|.++|.+||+|..|.|+.. .++|||+|.+.++|+.|.+++ +...|+|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 55566667789999999999999999999999999999988876 469999999999999998855 55668999
Q ss_pred EeEEEeccC
Q 022420 106 TIRVDHVAK 114 (297)
Q Consensus 106 ~i~V~~~~~ 114 (297)
.|+|.|..+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999877
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=6e-11 Score=98.11 Aligned_cols=82 Identities=23% Similarity=0.467 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHH----HhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLA----VFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~----~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
..+..||||-||+.-+..++|+. +|++||+|..|.... +.+.+|-|||.|.+.+.|-.|+..|+|..|-|+++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 45566999999999999998887 999999999986653 67889999999999999999999999999999999
Q ss_pred EEEeccCcc
Q 022420 108 RVDHVAKYK 116 (297)
Q Consensus 108 ~V~~~~~~~ 116 (297)
.|+||....
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999987644
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.3e-11 Score=111.79 Aligned_cols=90 Identities=27% Similarity=0.485 Sum_probs=81.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+..+.|+|.|||+.++..+|.++|..||.|..|.|+.-...+.++|||||+|-++.+|..|+..|..+-|.|+.|+++|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34679999999999999999999999999999999987667788999999999999999999999999999999999999
Q ss_pred cCcccchhHH
Q 022420 113 AKYKKKEEED 122 (297)
Q Consensus 113 ~~~~~~~~~~ 122 (297)
..........
T Consensus 691 ~~d~~~e~~r 700 (725)
T KOG0110|consen 691 KSDNTMEALR 700 (725)
T ss_pred ccchHHHHHH
Confidence 8766644333
No 67
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.14 E-value=5.8e-10 Score=102.34 Aligned_cols=80 Identities=28% Similarity=0.407 Sum_probs=67.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.....+|||.|||.+++..+|+++|..||.|+...|..-.-.++..+||||+|.+.+.++.||+ -+-..|+++.|.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEe
Confidence 3445679999999999999999999999999998776543334545999999999999999994 557889999999985
Q ss_pred c
Q 022420 112 V 112 (297)
Q Consensus 112 ~ 112 (297)
-
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.14 E-value=1.3e-10 Score=107.09 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=76.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
-...|||.+|...|...+|+.||++||+|+-.+|+++.-+.-.++|+||++.+...|.+||+.|+-++|.|+.|.|+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34689999999999999999999999999999999998888889999999999999999999999999999999999886
Q ss_pred Cc
Q 022420 114 KY 115 (297)
Q Consensus 114 ~~ 115 (297)
+.
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 53
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=2.1e-10 Score=109.18 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..-++|||||.|+.++++.+|..+|+.||+|.+|.|+.. +++|||......+|.+||.+|.+..|.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 456789999999999999999999999999999988765 68999999999999999999999999999999999
Q ss_pred ccCcccch
Q 022420 112 VAKYKKKE 119 (297)
Q Consensus 112 ~~~~~~~~ 119 (297)
+.....+.
T Consensus 492 a~g~G~ks 499 (894)
T KOG0132|consen 492 AVGKGPKS 499 (894)
T ss_pred eccCCcch
Confidence 87654443
No 70
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=2.9e-10 Score=97.10 Aligned_cols=83 Identities=33% Similarity=0.510 Sum_probs=77.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+...|||+|+.+.++.++|+..|+.||.|..|.|+.+...+.++|||||+|.+.+.++.||. |++..|.+..|.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456788999999999999999999999999999999999999898999999999999999999995 9999999999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8753
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.2e-10 Score=96.58 Aligned_cols=85 Identities=25% Similarity=0.489 Sum_probs=75.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-C--eEeEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-G--RTIRV 109 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g--~~i~V 109 (297)
.+..+||||.|...-.|+++..+|..||.|.+|.+.... .|.++|+|||.|.+..+|+.||..|||.... | ..|+|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 367899999999999999999999999999999998876 7899999999999999999999999997643 3 57899
Q ss_pred EeccCcccc
Q 022420 110 DHVAKYKKK 118 (297)
Q Consensus 110 ~~~~~~~~~ 118 (297)
.++...+..
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 998876543
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.6e-10 Score=103.23 Aligned_cols=75 Identities=29% Similarity=0.515 Sum_probs=70.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
..|||| +.+|+..|.++|+++|+|++|.|+.+. | +.|||||.|.++.+|++||.+||...|.|++|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368998 899999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred c
Q 022420 116 K 116 (297)
Q Consensus 116 ~ 116 (297)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.04 E-value=8.9e-10 Score=93.92 Aligned_cols=85 Identities=26% Similarity=0.469 Sum_probs=75.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.+-.++|+|.|||+.|+.++|++||..||.++.+.|..+. .|.+.|.|-|.|...++|..||+.|||+.|+|.+|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999988888777775 899999999999999999999999999999999999988
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
..+...
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765443
No 74
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.6e-10 Score=101.29 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=77.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
..+....|||.-+.+++++++|+.+|+.||+|++|.+...+....++||+||+|.+..+...||..||=..|+|..|.|-
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34556899999999999999999999999999999999999889999999999999999999999999999999999887
Q ss_pred ecc
Q 022420 111 HVA 113 (297)
Q Consensus 111 ~~~ 113 (297)
.+-
T Consensus 286 k~v 288 (544)
T KOG0124|consen 286 KCV 288 (544)
T ss_pred ccc
Confidence 653
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.00 E-value=1.4e-09 Score=94.90 Aligned_cols=81 Identities=35% Similarity=0.621 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG 104 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g 104 (297)
.-++.|||.|||.++|.+++.++|++||-|. .|+|..+. .|+.+|-|+|.|...+++..||+.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456799999999999999999999999875 37888886 59999999999999999999999999999999
Q ss_pred eEeEEEeccC
Q 022420 105 RTIRVDHVAK 114 (297)
Q Consensus 105 ~~i~V~~~~~ 114 (297)
+.|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999999873
No 76
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.9e-10 Score=94.43 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.....||||+||...++++-|.++|-+.|+|..|.|.... .++.+ ||||+|.++.++..|+..|||..|.+.+|+|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3456799999999999999999999999999999888776 45556 999999999999999999999999999999988
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
-...
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6544
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=6.7e-10 Score=98.36 Aligned_cols=84 Identities=30% Similarity=0.507 Sum_probs=78.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
...+|||++||.++++++|++.|.+||.|..+.|+.+..+..+++|+||.|.+++++.+++ ...-+.|+++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 4669999999999999999999999999999999999999999999999999999999999 788899999999999988
Q ss_pred Ccccc
Q 022420 114 KYKKK 118 (297)
Q Consensus 114 ~~~~~ 118 (297)
+....
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 75543
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=1.2e-09 Score=98.01 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=69.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||.|||+++||+.|++-|..||.|+++.|+ +.++++| .|.|.++++|+.||..|+|..|.|+.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4567899999999999999999999999999999985 3577776 8999999999999999999999999999986
Q ss_pred c
Q 022420 112 V 112 (297)
Q Consensus 112 ~ 112 (297)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=5.2e-10 Score=99.03 Aligned_cols=80 Identities=29% Similarity=0.590 Sum_probs=72.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.++|||++|+|.++++.|.+.|.+||+|..|.|+.++.++.++||+||+|.+.+.+..+| ....+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 6789999999999999999999999999999999999999999999999999999999888 565677888888776665
Q ss_pred C
Q 022420 114 K 114 (297)
Q Consensus 114 ~ 114 (297)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 80
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.94 E-value=3.1e-08 Score=87.25 Aligned_cols=89 Identities=34% Similarity=0.511 Sum_probs=79.1
Q ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 27 ~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
...+......+|||-+||..+++.+|.++|.+||.|+ .|+|.+++.|+++++-|.|.|++...|++||.-++
T Consensus 58 ~~~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a 137 (351)
T KOG1995|consen 58 SSMADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA 137 (351)
T ss_pred CccccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc
Confidence 3334466778999999999999999999999999884 47888999999999999999999999999999999
Q ss_pred CceeCCeEeEEEeccCc
Q 022420 99 GAQILGRTIRVDHVAKY 115 (297)
Q Consensus 99 g~~l~g~~i~V~~~~~~ 115 (297)
+..|.+.+|+|.+|...
T Consensus 138 gkdf~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 138 GKDFCGNTIKVSLAERR 154 (351)
T ss_pred cccccCCCchhhhhhhc
Confidence 99999999999877543
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.4e-09 Score=90.79 Aligned_cols=71 Identities=34% Similarity=0.653 Sum_probs=65.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
..|||++||+.+.+.+|+.||..||+|..|.|. .||+||+|++..+|..||..||+..|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999998775 47899999999999999999999999998899988764
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=2.1e-09 Score=90.17 Aligned_cols=94 Identities=22% Similarity=0.400 Sum_probs=84.5
Q ss_pred ccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 19 DLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
....|.+.+...+..+...||.|.|..+++.+.|-..|.+|-......++.++-|++++||+||.|.+..++..|+.+|+
T Consensus 174 ~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 174 AGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred cccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 34455666666777888999999999999999999999999888888999999999999999999999999999999999
Q ss_pred CceeCCeEeEEEec
Q 022420 99 GAQILGRTIRVDHV 112 (297)
Q Consensus 99 g~~l~g~~i~V~~~ 112 (297)
|..++.++|++..+
T Consensus 254 gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKS 267 (290)
T ss_pred ccccccchhHhhhh
Confidence 99999999987643
No 83
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.86 E-value=7.2e-10 Score=102.08 Aligned_cols=88 Identities=25% Similarity=0.451 Sum_probs=80.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+++.+..|||+-.|+..+++-+|.+||+.+|+|..|.|+.+..++.++|.|||+|.+.+++..|| .|.|..|.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 45566789999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EeccCcccc
Q 022420 110 DHVAKYKKK 118 (297)
Q Consensus 110 ~~~~~~~~~ 118 (297)
......+..
T Consensus 253 q~sEaeknr 261 (549)
T KOG0147|consen 253 QLSEAEKNR 261 (549)
T ss_pred cccHHHHHH
Confidence 887655444
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.85 E-value=3.2e-08 Score=72.65 Aligned_cols=81 Identities=19% Similarity=0.223 Sum_probs=71.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC----CeEeEE
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQ--CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL----GRTIRV 109 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~----g~~i~V 109 (297)
+||.|.|||...+.++|.+++.. .|....+.|+.|..+..+.|||||.|.+++.|....+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998874 467888899999989999999999999999999999999999875 567788
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.+|.-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8775443
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=4.9e-09 Score=96.86 Aligned_cols=73 Identities=29% Similarity=0.480 Sum_probs=66.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
...+..+|+|-|||..|++++|..+|+.||+|..|..... ..+.+||+|.+..+|+.|+++|++.+|.|+.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456789999999999999999999999999999766544 378999999999999999999999999999988
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.78 E-value=5.7e-08 Score=80.25 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee-cCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC---CeEeEE
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR-DKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL---GRTIRV 109 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~---g~~i~V 109 (297)
...||||.+||.++..-+|..+|..|--.+.+.|.. .+.....+.+|||+|.+...|++|+.+|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999885455444432 2222234579999999999999999999999986 788999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
++++...+
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99876543
No 87
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.71 E-value=2.6e-08 Score=87.12 Aligned_cols=81 Identities=21% Similarity=0.409 Sum_probs=71.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
..+|||||-|++|.++|.+.+...| .|..+++..+..+|+++|||+|..-+..++++.++.|...+|.|..-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4799999999999999999998776 67788889999999999999999999999999999999999999877766554
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+..
T Consensus 161 K~~ 163 (498)
T KOG4849|consen 161 KTN 163 (498)
T ss_pred hhh
Confidence 443
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.65 E-value=5.6e-08 Score=92.06 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=72.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG---TGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
-.+..+.|||+||++.++++.|...|..||+|..|+|+.-.. .....-++||.|-+..+|+.|++.|+|..|.+..|
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356678999999999999999999999999999999986542 23456689999999999999999999999999999
Q ss_pred EEEec
Q 022420 108 RVDHV 112 (297)
Q Consensus 108 ~V~~~ 112 (297)
++-|.
T Consensus 250 K~gWg 254 (877)
T KOG0151|consen 250 KLGWG 254 (877)
T ss_pred eeccc
Confidence 88887
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=5.6e-08 Score=90.59 Aligned_cols=84 Identities=31% Similarity=0.528 Sum_probs=78.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
....|||++||..+++.++.+++..||.+....++.+..++.++||||.+|.+......|+..|||..+.+++|+|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45689999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred Cccc
Q 022420 114 KYKK 117 (297)
Q Consensus 114 ~~~~ 117 (297)
....
T Consensus 368 ~g~~ 371 (500)
T KOG0120|consen 368 VGAS 371 (500)
T ss_pred ccch
Confidence 5443
No 90
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.57 E-value=3e-08 Score=83.61 Aligned_cols=92 Identities=25% Similarity=0.517 Sum_probs=75.8
Q ss_pred HHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCcccchhHHHHHHHh
Q 022420 50 GDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYKKKEEEDEETRQR 128 (297)
Q Consensus 50 ~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~~~~~~~~~~~~~~ 128 (297)
++|...|. +||+|+++.|..+. .-...|.+||.|..+++|++|+..||+..|.|++|+.++++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~----------- 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF----------- 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch-----------
Confidence 34444445 89999999776653 456789999999999999999999999999999999999876443
Q ss_pred hhhhccccccccCCCCCCCCcceeccCC
Q 022420 129 MREERGVCRAFQRGECTRGDGCKFSHNE 156 (297)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (297)
....|..|-.+.|..|+.|+|.|-.
T Consensus 151 ---rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 151 ---REAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred ---hhhhhcccccccCCCCCcCcchhhh
Confidence 3456888888899999999999865
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.52 E-value=3.8e-07 Score=83.38 Aligned_cols=78 Identities=24% Similarity=0.435 Sum_probs=65.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
......|-+.+|||.+|+++|++||+.| .|..+.+++ .+|++.|-|||+|.+++++++|| +++-..+..+-|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEc
Confidence 3445677889999999999999999999 588866665 47999999999999999999999 6777778888888866
Q ss_pred cc
Q 022420 112 VA 113 (297)
Q Consensus 112 ~~ 113 (297)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 64
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.48 E-value=5.6e-07 Score=80.47 Aligned_cols=74 Identities=22% Similarity=0.449 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 35 SAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 35 ~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
...|.|.||... +|.+.|..+|..||.|..|+|+.++ +-.|+|+|.+...|+.|++.|+|..|.|++|.|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 478889999875 8999999999999999999999876 3579999999999999999999999999999999876
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.46 E-value=9.9e-07 Score=61.96 Aligned_cols=71 Identities=21% Similarity=0.460 Sum_probs=48.5
Q ss_pred cEEEEeCCCCCCCHHHHH----HHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 36 AYVYVGGIPFDLTEGDLL----AVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~----~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
..|||.|||.+.+...|. .|+..|| +|..| . .+.|+|-|.+++.|..|++.|+|..+-|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999998876554 6667786 66665 2 2569999999999999999999999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
+.+...
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 886543
No 94
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.45 E-value=2.1e-08 Score=88.87 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=59.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
.||+|++|+..+...+|.++|..+|.|.+.++.. +....+|-|+|....+...|+ .++|.++.-+...+....|.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCcc
Confidence 5799999999999999999999999999887763 334567889999999999999 78888877444444333333
No 95
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.41 E-value=1.6e-06 Score=72.16 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=70.7
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEe
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTI 107 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i 107 (297)
....++..+||+.|||..++.+.|..+|.+|.-...|.++... .+.|||+|.+...|..|...|++..|- ...|
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 4557888999999999999999999999999999999888764 579999999999999999999998886 7788
Q ss_pred EEEecc
Q 022420 108 RVDHVA 113 (297)
Q Consensus 108 ~V~~~~ 113 (297)
.|.++.
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 887653
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.31 E-value=6.1e-07 Score=74.26 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=54.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
...||||.||.++++|++|+.+|+.|--..-++|-.. . ..+.|||+|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 3469999999999999999999999976555555321 2 2468999999999999999999998763
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.31 E-value=2.2e-06 Score=74.97 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=63.5
Q ss_pred cCCCCcEEEEeCCCCCCCHHH----H--HHHhccCCCeEEEEEeecC-CCCCCceE--EEEEecCHHHHHHHHHHhCCce
Q 022420 31 KYKDSAYVYVGGIPFDLTEGD----L--LAVFAQCGEIVDVNLVRDK-GTGKPRGF--AFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~----L--~~~F~~~G~i~~v~i~~~~-~~~~~~g~--afV~f~~~~~a~~A~~~l~g~~ 101 (297)
......-|||-+||+-+..++ | .++|.+||+|..|.|.... ......+. .||+|.+.++|..||.+++|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 344556789999998876655 2 3899999999998765432 11122233 3999999999999999999999
Q ss_pred eCCeEeEEEecc
Q 022420 102 ILGRTIRVDHVA 113 (297)
Q Consensus 102 l~g~~i~V~~~~ 113 (297)
++|+.|+..|-.
T Consensus 190 ~DGr~lkatYGT 201 (480)
T COG5175 190 LDGRVLKATYGT 201 (480)
T ss_pred ccCceEeeecCc
Confidence 999999998754
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.25 E-value=1.8e-06 Score=64.81 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=45.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc-----eeCCeEeEEE
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA-----QILGRTIRVD 110 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~l~g~~i~V~ 110 (297)
+.|+|.+++..++.++|+++|.+||.|.+|.+.... ..|||-|.+.+.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999887653 36999999999999999877544 5666666665
Q ss_pred ec
Q 022420 111 HV 112 (297)
Q Consensus 111 ~~ 112 (297)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.23 E-value=3.7e-06 Score=77.07 Aligned_cols=78 Identities=33% Similarity=0.480 Sum_probs=63.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.+..+|-+.+||+.+|+++|.+||+..-.|.. |.|+.++ .+.+.|-|||+|++.+.|++|| .-|...|.-+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeeh
Confidence 35568999999999999999999997743333 4455554 6779999999999999999999 6777788888888865
Q ss_pred c
Q 022420 112 V 112 (297)
Q Consensus 112 ~ 112 (297)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 4
No 100
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=8e-07 Score=74.42 Aligned_cols=71 Identities=28% Similarity=0.487 Sum_probs=62.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
....+.|+|.+|+..+.+.+|.+.|.++|++....+ ..++|||+|+++++|..||..|++..|.++.|.|.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 344578889999999999999999999999855433 25689999999999999999999999999999993
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=6.5e-06 Score=76.57 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=64.6
Q ss_pred CCcEEEEeCCCCCCC------HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeE
Q 022420 34 DSAYVYVGGIPFDLT------EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRT 106 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~ 106 (297)
-...|+|.|+|..-. ..-|..+|+++|+|..+.++.+..+ ..+||+|++|.+..+|+.|++.|||+.|. ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 346888999986422 2345689999999999999988644 49999999999999999999999999986 778
Q ss_pred eEEEecc
Q 022420 107 IRVDHVA 113 (297)
Q Consensus 107 i~V~~~~ 113 (297)
+.|...+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 8776544
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.10 E-value=3.5e-05 Score=67.89 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=72.8
Q ss_pred HHHhhhhhhhhhccCCCCCccccccCCCCcEEEEeCCCC----CCC-------HHHHHHHhccCCCeEEEEEeecCCCCC
Q 022420 7 VKRIQHINSKEADLGISDDASWHAKYKDSAYVYVGGIPF----DLT-------EGDLLAVFAQCGEIVDVNLVRDKGTGK 75 (297)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~----~~~-------~~~L~~~F~~~G~i~~v~i~~~~~~~~ 75 (297)
++.+.++..+.+.+-+.. .-.......+||.|.||-. ..+ .++|.+-..+||.|..|.|.-. .
T Consensus 239 ~kk~~k~q~k~~dw~pd~--~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----h 312 (382)
T KOG1548|consen 239 KKKLKKQQQKLLDWRPDR--DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----H 312 (382)
T ss_pred HHHHHHHHHhhcccCCCc--cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----C
Confidence 344444444444443332 2334456778999999853 233 2455566789999999977632 4
Q ss_pred CceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 76 PRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 76 ~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.|.+-|.|.+.+.|..||..|+|..|.|++|......
T Consensus 313 PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 313 PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 58999999999999999999999999999999887754
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.09 E-value=2.1e-06 Score=75.92 Aligned_cols=81 Identities=33% Similarity=0.581 Sum_probs=72.8
Q ss_pred CCcEEE-EeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 34 DSAYVY-VGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~-V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+..++| |++|+..++.++|..+|..+|.|..+.++.+..++..+|||||.|.....+..|+.. +...+.+.+|.|...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445666 999999999999999999999999999999999999999999999999999999965 788899999999876
Q ss_pred cCc
Q 022420 113 AKY 115 (297)
Q Consensus 113 ~~~ 115 (297)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 553
No 104
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.08 E-value=7e-06 Score=73.21 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=66.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG---TGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
.|.|+||.+.++.+++..||..+|+|..+.|+.+.. .....-.|||.|.+...+..|. .|.+++|-+..|.|-.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 799999999999999999999999999998876432 2344568999999999999998 788888888887776655
Q ss_pred Cccc
Q 022420 114 KYKK 117 (297)
Q Consensus 114 ~~~~ 117 (297)
....
T Consensus 88 ~~~~ 91 (479)
T KOG4676|consen 88 DEVI 91 (479)
T ss_pred CCCC
Confidence 4333
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.96 E-value=6.3e-06 Score=74.33 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=62.0
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeec---CCC--CC--------CceEEEEEecCHHHHHHHHHH
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD---KGT--GK--------PRGFAFVAYEDQRSTILAVDN 96 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~---~~~--~~--------~~g~afV~f~~~~~a~~A~~~ 96 (297)
.++-++.||.+.|||.+-..+-|.+||..||.|+.|.|+.- +.+ +. .+-+|||+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999888999999999999999999875 221 11 245799999999999999987
Q ss_pred hCCceeCCeEeEE
Q 022420 97 LNGAQILGRTIRV 109 (297)
Q Consensus 97 l~g~~l~g~~i~V 109 (297)
|+.....-..|+|
T Consensus 306 ~~~e~~wr~glkv 318 (484)
T KOG1855|consen 306 LNPEQNWRMGLKV 318 (484)
T ss_pred hchhhhhhhcchh
Confidence 7655443333333
No 106
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.95 E-value=5.8e-06 Score=69.88 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC--------CCCce----EEEEEecCHHHHHHHHHHhCCce
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT--------GKPRG----FAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~--------~~~~g----~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
..-.|||++||+.+...-|.++|+.||.|-.|.|.....+ +.+.. -++|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5679999999999999999999999999999988766544 22222 36899999999999999999999
Q ss_pred eCCeE
Q 022420 102 ILGRT 106 (297)
Q Consensus 102 l~g~~ 106 (297)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.83 E-value=0.00012 Score=57.52 Aligned_cols=77 Identities=31% Similarity=0.427 Sum_probs=54.7
Q ss_pred cccCCCCcEEEEeCCC-----CCCCH----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 29 HAKYKDSAYVYVGGIP-----FDLTE----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~-----~~~~~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
....+|.-||.|.-+. ..... .+|.+.|..||.|.-|+++.+. -+|+|.+-.+|.+|+ .|+|
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaal-s~dg 91 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAAL-SLDG 91 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHH-HGCC
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHH-ccCC
Confidence 3456777888887666 12222 3777889999999888888653 799999999999999 8999
Q ss_pred ceeCCeEeEEEeccC
Q 022420 100 AQILGRTIRVDHVAK 114 (297)
Q Consensus 100 ~~l~g~~i~V~~~~~ 114 (297)
.+|+|+.|+|....+
T Consensus 92 ~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTP 106 (146)
T ss_dssp SEETTEEEEEEE---
T ss_pred cEECCEEEEEEeCCc
Confidence 999999999987554
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.4e-05 Score=70.04 Aligned_cols=66 Identities=26% Similarity=0.428 Sum_probs=61.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 95 (297)
..+.+..|||||+||.-++.++|-.+|. -||.|+.+-|-.|++-.-++|-|=|+|++..+..+||.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3567889999999999999999999999 79999999999998788899999999999999999995
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.77 E-value=8.3e-05 Score=66.91 Aligned_cols=80 Identities=24% Similarity=0.268 Sum_probs=65.8
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-eEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG-RTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g-~~i~V 109 (297)
-.+|+.+|.+.|||..+++++|+.+|..-|-....... .++.+.+|++.+++.+.|..|+-.|+++.+.. ..|.|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 34778899999999999999999999988765544332 23346799999999999999999999999985 58999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.+++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 98754
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=6.7e-05 Score=48.89 Aligned_cols=52 Identities=29% Similarity=0.600 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV 94 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 94 (297)
+.|-|.++++... +.|..+|..||+|..+.+... ..++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5688899997766 456668889999999887722 347999999999999986
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=3.1e-05 Score=75.83 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=70.4
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG--RTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g--~~i~ 108 (297)
...+.+.|||++|..++....|..+|..||.|..|.+-.. ..||||.|++...|+.|++.|-|..|++ +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 5667889999999999999999999999999999877543 4699999999999999999999999985 6789
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99876543
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.74 E-value=5.5e-05 Score=67.49 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=69.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEE--EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVD--VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~-i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
.......|-+.+||+.++.++|..||..|.. |.. |+|+.+. .|.+.|-|||+|.+.+.|.+|+...+++..+.+-|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 3344668899999999999999999998863 444 8888875 78999999999999999999998888888888888
Q ss_pred EEEecc
Q 022420 108 RVDHVA 113 (297)
Q Consensus 108 ~V~~~~ 113 (297)
.|-.+.
T Consensus 355 Evfp~S 360 (508)
T KOG1365|consen 355 EVFPCS 360 (508)
T ss_pred EEeecc
Confidence 886553
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.72 E-value=9.8e-05 Score=59.66 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=56.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
...|.|.+||+..++++|++++.+.|.|+...+..+ |++.|+|...++++-||.+|+...+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 468999999999999999999999999999999876 48999999999999999999887764
No 114
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=0.00018 Score=53.19 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=51.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe-ecC------CCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLV-RDK------GTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~-~~~------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
.+.|.|-++|+. ....|...|++||.|++..-+ .+. ..........|.|.++.+|++|| ..||..|.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 455778899988 457789999999999887401 000 00112458899999999999999 899999998654
Q ss_pred -EEEecc
Q 022420 108 -RVDHVA 113 (297)
Q Consensus 108 -~V~~~~ 113 (297)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466553
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=0.00015 Score=69.33 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=66.6
Q ss_pred CCCc-EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSA-YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~-~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.+.+ .|-|-|+|+.++-++|.+||..|-.+-.--++...+.|++.|-|.|.|++.+.|..|...|++..|.+++|+|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 677889999999999999999996554433444446899999999999999999999999999999999998864
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.68 E-value=3.3e-05 Score=72.41 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=66.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee---CCe
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI---LGR 105 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l---~g~ 105 (297)
+...+++.|||.||-.-+|.-+|++|+. .+|.|..++|-. .+..|||.|.+.+.|.+.+.+|||..+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3567789999999999999999999999 566777764322 256899999999999999999999886 468
Q ss_pred EeEEEeccCc
Q 022420 106 TIRVDHVAKY 115 (297)
Q Consensus 106 ~i~V~~~~~~ 115 (297)
.|.|.|....
T Consensus 513 ~L~adf~~~d 522 (718)
T KOG2416|consen 513 HLIADFVRAD 522 (718)
T ss_pred eeEeeecchh
Confidence 8999887543
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.63 E-value=0.0003 Score=62.70 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=65.6
Q ss_pred CCCCcEEEEeCCCC--CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-C-eEe
Q 022420 32 YKDSAYVYVGGIPF--DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-G-RTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~--~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g-~~i 107 (297)
..+.+.|.+.-|++ -+|.+-|..+....|+|..|.|+.. ++ -.|.|||++.+.|++|.+.|||..|. | ..|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 34556666666655 5888999999999999999988764 22 35999999999999999999999986 4 478
Q ss_pred EEEeccCccc
Q 022420 108 RVDHVAKYKK 117 (297)
Q Consensus 108 ~V~~~~~~~~ 117 (297)
+|++|++...
T Consensus 192 KIeyAkP~rl 201 (494)
T KOG1456|consen 192 KIEYAKPTRL 201 (494)
T ss_pred EEEecCccee
Confidence 9999988654
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=0.00017 Score=67.62 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=51.9
Q ss_pred HHHHhccCCCeEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 52 LLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 52 L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
|+..+.+||.|..|.|+..... .-..|-.||+|.+.++|+.|+++|+|.+|.|+.|+..|...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3345578999999999876222 23567899999999999999999999999999999988654
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00021 Score=66.26 Aligned_cols=63 Identities=35% Similarity=0.669 Sum_probs=48.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecC---CCCCCce---EEEEEecCHHHHHHHHHHh
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK---GTGKPRG---FAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~---~~~~~~g---~afV~f~~~~~a~~A~~~l 97 (297)
-+.+||||+||+.++|++|...|..||.|. |.++... .-..++| |+|+.|+++.+++..|.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 357999999999999999999999999865 3444211 1123566 9999999998888766544
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.48 E-value=0.00065 Score=60.63 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=69.6
Q ss_pred cCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
...+.+.+.|-+|... ++-+.|..+|-.||.|..|++++.+ .|.|.|+.-+..+++.||..||+..|-|..|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3456789999999886 5667889999999999999999876 578999999999999999999999999999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++..
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 88653
No 121
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.21 E-value=0.00061 Score=57.89 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=72.3
Q ss_pred hhhhhhhccCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHH
Q 022420 12 HINSKEADLGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTI 91 (297)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 91 (297)
+++..++........+.-........|||.||+..+..+.|+..|..||+|....++.+. .+++.+-.+|+|.....|.
T Consensus 8 e~ak~eLd~~~~~~~~lr~rfa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~ 86 (275)
T KOG0115|consen 8 EIAKRELDGRFPKGRSLRVRFAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNAR 86 (275)
T ss_pred HHHHHhcCCCCCCCCceEEEeeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHH
Confidence 344444444444444444555556889999999999999999999999999887666664 6788889999999999999
Q ss_pred HHHHHhCCce----eCCeEeEEEe
Q 022420 92 LAVDNLNGAQ----ILGRTIRVDH 111 (297)
Q Consensus 92 ~A~~~l~g~~----l~g~~i~V~~ 111 (297)
+|+..+.-.- ..+.++-|..
T Consensus 87 ~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 87 KAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred HHHHHhccCccccCCCCCccCCCh
Confidence 9997664322 3355555544
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.15 E-value=0.00017 Score=70.49 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
...|||.|+|+..|.++|+.+|..+|.++.+.++..+ .|+++|.|||.|.++.++..++..++...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4589999999999999999999999999999888876 899999999999999999999988888888877788877665
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.07 E-value=0.0018 Score=56.16 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=51.2
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCCc-eEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPR-GFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 49 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.++++..++||+|..|.|...+...... ---||+|+..++|.+|+-.|||..|+|+.+...|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35667888899999998777654222211 236999999999999999999999999999887754
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.97 E-value=0.0025 Score=52.48 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=52.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhcc-CCCe---EEEE--EeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQ-CGEI---VDVN--LVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG- 104 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~-~G~i---~~v~--i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g- 104 (297)
.....+|.|.+||+.+|++++.+.+.. ++.. ..+. +...........-|||.|.+.+++...+..++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345668999999999999999987776 6655 3333 11111112234569999999999999999999988742
Q ss_pred ----eEeEEEeccCccc
Q 022420 105 ----RTIRVDHVAKYKK 117 (297)
Q Consensus 105 ----~~i~V~~~~~~~~ 117 (297)
.+..|++|..++.
T Consensus 84 kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp TS-EEEEEEEE-SS---
T ss_pred CCCCcceeEEEcchhcc
Confidence 3568888876444
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=6.8e-05 Score=73.11 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=59.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
..++||.||+..+.+.+|...|..+|.|..+.|.....++..+|+|||+|...+.+.+||.......++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 368999999999999999999999999988877766668899999999999999999999555555444
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.93 E-value=0.00078 Score=61.02 Aligned_cols=74 Identities=30% Similarity=0.468 Sum_probs=58.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc-eeCCeEeEEEecc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA-QILGRTIRVDHVA 113 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~l~g~~i~V~~~~ 113 (297)
..|||+||.+.++..+|+.+|...-. ...-.|+. .|||||.+.+..-|.+|++.|+|. ++.|+.+.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985411 11112332 489999999999999999999986 5889999998865
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+.+
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 544
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.89 E-value=0.0034 Score=44.31 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=41.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
.+..||+ +|..+...+|.++|+.||.|. |.++.+. -|||.+...+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3456665 999999999999999999876 4455442 599999999999999987763
No 128
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.88 E-value=0.002 Score=60.30 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=55.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcc--CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeEeEE
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQ--CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG--AQILGRTIRV 109 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~l~g~~i~V 109 (297)
.-+.|+|.-||..+-.++|+.||.. |-++..|.+..+. -=||+|++..+|+.|++.|.. .+|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467888999999999999999984 7788999887763 369999999999999987753 3466666643
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.76 E-value=0.0084 Score=40.11 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=44.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC---CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQC---GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
.+|+|.+|. +++.++|+.+|..| .....|.++-+. -|-|.|.+.+.|..||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 468999986 57778999999988 235678888775 4899999999999999754
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.75 E-value=0.00064 Score=60.06 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=61.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHhccCCCeEEEEEeecCC--C-CCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLL---AVFAQCGEIVDVNLVRDKG--T-GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~---~~F~~~G~i~~v~i~~~~~--~-~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
....-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. . .-...-+||+|+..++|..||...+|..+.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 344678888999876555444 7888999999998776542 1 112233899999999999999999999999988
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
|++.+...
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 77666543
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.72 E-value=0.0082 Score=53.98 Aligned_cols=72 Identities=29% Similarity=0.437 Sum_probs=52.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC----CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQC----GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
-.|-+.+||+++++.++.+||.+- |.+..|-++... +|+..|-|||.|..+++|+.|| .-|-..|+-+-|.|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHH
Confidence 355668999999999999999731 234455555543 7899999999999999999999 34444444444443
No 132
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.71 E-value=0.0082 Score=46.73 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=56.0
Q ss_pred cCCCCcEEEEeCCCCCC----CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 31 KYKDSAYVYVGGIPFDL----TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~----~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
..+|..||.|.=|..++ +...|...++.||+|.+|.++- +.-|.|.|.+..+|-.|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 46778899997666554 3344556678899999997653 33699999999999999988876 555677
Q ss_pred eEEEecc
Q 022420 107 IRVDHVA 113 (297)
Q Consensus 107 i~V~~~~ 113 (297)
+.+.|-+
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7777643
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.54 E-value=0.0022 Score=61.62 Aligned_cols=82 Identities=26% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.....|||..||..+++..+.++|...-.|+. |.|.... +++..+.|||+|..++++..|+..-+.+.++.+.|.|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 34579999999999999999999997766665 6666655 778889999999998888888744555556677888876
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
....
T Consensus 511 i~~~ 514 (944)
T KOG4307|consen 511 IADY 514 (944)
T ss_pred hhhH
Confidence 5443
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.54 E-value=0.0006 Score=67.10 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=65.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.-.+.|||++||+..+++.+|...|..+|.|..|.|-.-. -+.-..||||.|.+...+..|+..|.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456799999999999999999999999999999886653 344467999999999999999999988887654544444
Q ss_pred c
Q 022420 112 V 112 (297)
Q Consensus 112 ~ 112 (297)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 3
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.38 E-value=0.0021 Score=61.48 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=66.0
Q ss_pred ccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 26 ASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 26 ~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
.+.....++..+|||+||...+..+-+..++..||-|..+..+. |+|.+|..+..+..|+..|+...++|.
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 33445567888999999999999999999999999988876653 899999999999999999998899888
Q ss_pred EeEEEe
Q 022420 106 TIRVDH 111 (297)
Q Consensus 106 ~i~V~~ 111 (297)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 876665
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.31 E-value=0.0021 Score=59.11 Aligned_cols=74 Identities=27% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCcEEEEeCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 34 DSAYVYVGGIPFDL-TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~V~nL~~~~-~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+.+.|-|.-+|+.+ +-++|...|.+||+|..|.|-.. .-.|.|+|.+...|-.|. +.++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44555565666653 56899999999999999987654 235999999999998888 89999999999999997
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.007 Score=56.90 Aligned_cols=86 Identities=19% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee---C-CeE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI---L-GRT 106 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l---~-g~~ 106 (297)
+.+-+++.|.|+|...|...|.+... ..|.-..+.++.|..+....|||||.|.+.+++..+.+++||..+ + .+.
T Consensus 385 e~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Ki 464 (549)
T KOG4660|consen 385 ECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKI 464 (549)
T ss_pred cCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceee
Confidence 34455666777776655555554433 356666778888887888999999999999999999999999874 3 456
Q ss_pred eEEEeccCccc
Q 022420 107 IRVDHVAKYKK 117 (297)
Q Consensus 107 i~V~~~~~~~~ 117 (297)
+.|.||..+.+
T Consensus 465 a~itYArIQGk 475 (549)
T KOG4660|consen 465 ASITYARIQGK 475 (549)
T ss_pred eeeehhhhhch
Confidence 67777765443
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.11 E-value=0.069 Score=40.29 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=46.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
..+.+...|..++..+|..+...+- .|..+.|+.+. ..++-.++|+|.+...|..-.+.+||..+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444444455556655555553 57788888764 235667899999999999999999999876
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.02 E-value=0.044 Score=38.21 Aligned_cols=66 Identities=21% Similarity=0.482 Sum_probs=38.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 37 YVYVGGIP--FDLTEGDLLAVFAQCG-----EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 37 ~v~V~nL~--~~~~~~~L~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+||| |+- ..++..+|..+|...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|++|.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 4555 332 3578889998887654 4567777643 799988754 778889999999999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
+.|
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 864
No 140
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.034 Score=48.62 Aligned_cols=67 Identities=27% Similarity=0.404 Sum_probs=50.0
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE-eEEEec
Q 022420 38 VYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT-IRVDHV 112 (297)
Q Consensus 38 v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~-i~V~~~ 112 (297)
|-|-++|+... ..|+.+|.+||.|+..... .. -.+-+|-|.+...|++|| ..||..|+|-. |-|..+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~n-----gNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SN-----GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC-CC-----CceEEEEecchhHHHHhh-hhcCeeeccceEEeeeec
Confidence 44457776543 5688999999999886444 21 347899999999999999 89999998764 345443
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.62 E-value=0.0091 Score=58.72 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=63.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee--CCeEeEEEec
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI--LGRTIRVDHV 112 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l--~g~~i~V~~~ 112 (297)
..+.++.|.+-.++-..|..+|..||.|..++.+.+. -.|.|+|...+.|..|+++|+|.++ .|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3455566667778888999999999999999887764 4699999999999999999999885 4888888888
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
....
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 7543
No 142
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.34 E-value=0.06 Score=44.53 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=46.0
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeEeEEEeccCcc
Q 022420 48 TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN--GAQILGRTIRVDHVAKYK 116 (297)
Q Consensus 48 ~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~l~g~~i~V~~~~~~~ 116 (297)
....|+++|..|+.+..+.++... +=..|.|.+.+.|+.|...|+ +..|.|..|+|.+++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988887666442 458999999999999999999 999999999999885443
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.24 E-value=0.011 Score=52.31 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc-eeCCeEeEEEe
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA-QILGRTIRVDH 111 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~l~g~~i~V~~ 111 (297)
..+++||+++.+.+.+.++..+|..+|.+..+.+........++++++|.|...+.+..|| ++.+. .+.+..+...+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCcc
Confidence 4679999999999999999999999998887777766667889999999999999999999 55554 55555444333
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.12 Score=49.06 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=58.8
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccC----CCeEEEEEeecC----------CCCC---------------------
Q 022420 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQC----GEIVDVNLVRDK----------GTGK--------------------- 75 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~-~~~~~L~~~F~~~----G~i~~v~i~~~~----------~~~~--------------------- 75 (297)
..++..|-|.||.|. +...+|..+|..| |.|.+|.|+... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 7889999999864 489999887531 1111
Q ss_pred ----------------CceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 76 ----------------PRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 76 ----------------~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
-.-||.|+|.+...|.+.++.++|.+|.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 01378999999999999999999999975433
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.74 E-value=0.12 Score=47.70 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=59.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG 104 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g 104 (297)
...++..|+|-.+|..++..+|..|+..|- .|..|.|+.+.. -++=.++|.|.+.++|...++.+||..|..
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 344488999999999999999999998764 688999998542 223457899999999999999999998763
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.36 E-value=0.84 Score=30.98 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 46 DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 46 ~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.++-++|+..|..|+- .. |..+. .| -||.|.+..+|++|+...++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677999999999963 33 33443 23 589999999999999999999988877765
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.59 Score=42.64 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
-.+.|-|-++|...-.++|..+|..|+ .-..|.|+.+. .||..|++...|..|| .|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh-hc
Confidence 456788999999999999999999997 34667788764 7999999999999999 55
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.55 E-value=0.008 Score=54.70 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=64.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.-+..+-|.|||+...++.|..|+..||.|..|..+.. ..-....-|+|...+.+..||.+|+|..|.+..++|.|-
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 34567889999999999999999999999998865421 112234457899999999999999999999999999886
Q ss_pred c
Q 022420 113 A 113 (297)
Q Consensus 113 ~ 113 (297)
+
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 4
No 149
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.87 E-value=3.5 Score=40.95 Aligned_cols=67 Identities=9% Similarity=0.200 Sum_probs=47.9
Q ss_pred EEEEeCCC--CCCCHHHHHHHhccCCCe-----EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 37 YVYVGGIP--FDLTEGDLLAVFAQCGEI-----VDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 37 ~v~V~nL~--~~~~~~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
++|| ++- ..++..+|..++..-+.| -.|.|.. .|.||+.. ...|...+..|++..+.|+.|.|
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEE
Confidence 4554 443 358888888888755433 4455653 37899986 44577888899999999999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 8764
No 150
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.29 E-value=0.13 Score=44.54 Aligned_cols=68 Identities=31% Similarity=0.520 Sum_probs=44.9
Q ss_pred CcEEEEeCCCCC------------CCHHHHHHHhccCCCeEEEEEee-cC----CCCCCc-----eE---------EEEE
Q 022420 35 SAYVYVGGIPFD------------LTEGDLLAVFAQCGEIVDVNLVR-DK----GTGKPR-----GF---------AFVA 83 (297)
Q Consensus 35 ~~~v~V~nL~~~------------~~~~~L~~~F~~~G~i~~v~i~~-~~----~~~~~~-----g~---------afV~ 83 (297)
..|||+.+||.. .++.-|...|..||.|..|.|+. ++ .+++.. || |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 458999999863 35678899999999999887753 21 234332 33 3445
Q ss_pred ecCHHHHHHHHHHhCCcee
Q 022420 84 YEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 84 f~~~~~a~~A~~~l~g~~l 102 (297)
|-...-...|+..|-|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 5555556667777777654
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=86.99 E-value=1.2 Score=33.88 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=30.4
Q ss_pred cEEEEeCCCCC---------CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC-HHHHHHHH
Q 022420 36 AYVYVGGIPFD---------LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED-QRSTILAV 94 (297)
Q Consensus 36 ~~v~V~nL~~~---------~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~ 94 (297)
.+++|.|++.. ++.+.|.+.|..|..++ +..+.+. ..+.|+|+|+|.. -.-...|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 35677788653 35588999999998776 4444443 3568999999984 45555555
No 152
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=86.81 E-value=0.25 Score=39.63 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=11.5
Q ss_pred cCcchhhhhhccCCCccccccccccccc
Q 022420 247 ARSREDHYRRDEKRPKRHESESYLREDQ 274 (297)
Q Consensus 247 ~~~r~~~~~r~r~r~r~r~R~r~r~r~r 274 (297)
++.+....++.+++++++++++.+++.+
T Consensus 53 sprr~r~per~rsRsR~reRdrErdR~R 80 (196)
T KOG3263|consen 53 SPRRNRSPERKRSRSRSRERDRERDRER 80 (196)
T ss_pred CcccccchhhhccccccccchhhhHHHH
Confidence 3333333344444444444444444333
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.77 E-value=0.52 Score=38.37 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=53.0
Q ss_pred CcEEEEeCCCCCCCH-----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-EeE
Q 022420 35 SAYVYVGGIPFDLTE-----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR-TIR 108 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~-----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~-~i~ 108 (297)
.+++++++|+..+.. ...+.+|-+|-+.....++. +.++.-|.|.+.+.|..|..+++...|.|+ .|+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 356788888876433 23335565555544443433 245677899999999999999999999988 787
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
.-++++..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=85.25 E-value=0.62 Score=45.55 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=3.0
Q ss_pred EEEEecC
Q 022420 80 AFVAYED 86 (297)
Q Consensus 80 afV~f~~ 86 (297)
+||.|.+
T Consensus 695 ~~~k~~d 701 (877)
T KOG0151|consen 695 NPVKYDD 701 (877)
T ss_pred cccccch
Confidence 4444433
No 155
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.03 E-value=2.9 Score=36.58 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=41.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCCceEEEEEecC-------HHHHHHHHHHhC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYED-------QRSTILAVDNLN 98 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~-------~~~a~~A~~~l~ 98 (297)
.+-|||+||+.++...+|+..+.+.+.+ ..|.+.- +.+-||+.|.+ ..++.+++..+|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 3569999999999999999999887643 4444432 35679999976 345555554443
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.51 E-value=3.1 Score=28.40 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=44.6
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 50 GDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 50 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
.+|++.|..+| ++..|..+....+..+.-..||+......... .|+=..|++..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888888888 78888888887777788888998876543333 344456788888887543
No 157
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.85 E-value=4 Score=27.86 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 50 GDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 50 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
++|.+.|...| +|..|.-+....+..+....||+++...+... .|+=..|.+..|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46777888777 78888777777677888889999886655333 344456788888887653
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=7.7 Score=35.76 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=53.8
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccC----CCeEEEEEeecCC----------CC----------------------
Q 022420 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQC----GEIVDVNLVRDKG----------TG---------------------- 74 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~-~~~~~L~~~F~~~----G~i~~v~i~~~~~----------~~---------------------- 74 (297)
..++..|-|-||.|. +...+|..+|+.| |+|..|.|+.... .|
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456788999999996 7888999888754 4677777653210 00
Q ss_pred ----C----------C-------------------ceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022420 75 ----K----------P-------------------RGFAFVAYEDQRSTILAVDNLNGAQILG 104 (297)
Q Consensus 75 ----~----------~-------------------~g~afV~f~~~~~a~~A~~~l~g~~l~g 104 (297)
. - .-||.|++++...+...+..++|+++..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 0 0 1278999999999999999999998764
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=76.72 E-value=0.5 Score=39.71 Aligned_cols=71 Identities=28% Similarity=0.489 Sum_probs=56.7
Q ss_pred cEEEEeC----CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 36 AYVYVGG----IPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 36 ~~v~V~n----L~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
.+++.|+ |...++++.+..+|+..|+|..+.+..+. .+.++.+.||.+....+...|+...++..+--+++
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 4666676 77778999999999999999999998876 47888999999998888888887777665443333
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=75.73 E-value=3.9 Score=34.78 Aligned_cols=64 Identities=27% Similarity=0.479 Sum_probs=45.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 95 (297)
......+++.+++..++...+..+|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4456789999999999999999999999999777766554333344444555544444444443
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.97 E-value=0.38 Score=45.61 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
..++|||.||+++++-.+|+.++..+--+..+.+..........-+.+|+|.--..+..|+.+||+..|.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3578999999999999999999998865665555443333344567899999777777788788887654
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.17 E-value=8.8 Score=33.86 Aligned_cols=80 Identities=10% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecC-------CCCCCceEEEEEecCHHHHHHHHH----HhCC--c
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK-------GTGKPRGFAFVAYEDQRSTILAVD----NLNG--A 100 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~-------~~~~~~g~afV~f~~~~~a~~A~~----~l~g--~ 100 (297)
-+..|.+.||...++-..+...|.+||+|++|.++.+. ...+...-..+-|-+.+.|...+. .|.. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999765 112344567888888877654432 1211 2
Q ss_pred eeCCeEeEEEecc
Q 022420 101 QILGRTIRVDHVA 113 (297)
Q Consensus 101 ~l~g~~i~V~~~~ 113 (297)
.|....|.|.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3555566665544
No 163
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=71.77 E-value=2 Score=41.77 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=60.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
+||+.+-....+..-|..++..++.++...++.....+...+-||++|.....+..|. .|.+..+....+++..
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks~p 586 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKSHP 586 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceeccc
Confidence 8899888888888888899999999988888777667777778999999999887776 7888877777666544
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=71.48 E-value=5.5 Score=36.38 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCC--CCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKG--TGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~-i~~v~i~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
-..|.|-+||+.+++.+|.+.+..|-. |....+..... -..-.+.|||.|...+++......++|+.|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 356889999999999999988887642 22222321111 1123567999999999988888888888753
No 165
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=69.79 E-value=1.7 Score=38.70 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=5.8
Q ss_pred ceEEEEEecC
Q 022420 77 RGFAFVAYED 86 (297)
Q Consensus 77 ~g~afV~f~~ 86 (297)
.||-||-|..
T Consensus 160 lGFmYiRYtq 169 (453)
T KOG2888|consen 160 LGFMYIRYTQ 169 (453)
T ss_pred heeeEEeecC
Confidence 4566666654
No 166
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=61.56 E-value=39 Score=21.83 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCH----HHHHHHHHH
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ----RSTILAVDN 96 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 96 (297)
||.|.||.-.-....|+..+...-.|..+.+-.. .+-+-|+|... +....+|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788899888888999999998877888877544 24678888743 566666644
No 167
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=61.04 E-value=8.5 Score=34.54 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=17.3
Q ss_pred CCceEEEEEecCHHHHHHHHHHhCCcee
Q 022420 75 KPRGFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 75 ~~~g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
....-.||-|.-+..|.+|| .|-+..|
T Consensus 171 slRT~v~vry~pe~iACaci-yLaAR~~ 197 (367)
T KOG0835|consen 171 SLRTDVFVRYSPESIACACI-YLAARNL 197 (367)
T ss_pred ccccceeeecCHHHHHHHHH-HHHHhhh
Confidence 34556889888777666666 5655443
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.34 E-value=23 Score=23.67 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred HHHHHHhccCCCeEEEEEe
Q 022420 50 GDLLAVFAQCGEIVDVNLV 68 (297)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~ 68 (297)
.+|.++|+.+|+|.-+.|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6789999999999877654
No 169
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=58.56 E-value=31 Score=30.67 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.9
Q ss_pred EEecCHHH
Q 022420 82 VAYEDQRS 89 (297)
Q Consensus 82 V~f~~~~~ 89 (297)
|.|.+.++
T Consensus 109 LnydT~Es 116 (335)
T KOG0113|consen 109 LNYDTSES 116 (335)
T ss_pred ccccccHH
Confidence 35555444
No 170
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=58.36 E-value=12 Score=31.88 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=29.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV 65 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v 65 (297)
+.....+||+-|||..++++.|..+.+++|-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44566789999999999999999999998855443
No 171
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.38 E-value=2 Score=39.88 Aligned_cols=78 Identities=4% Similarity=-0.207 Sum_probs=54.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
...|+..||..+++.+|.-+|..||-|..+.+...-..+...-.+||+-.. ..++.||..+.-..+.+..+.|.+++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 346788899999999999999999988877665544344556667777653 345556655555556677777776654
No 172
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=51.95 E-value=1.1e+02 Score=23.64 Aligned_cols=74 Identities=8% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCCCcEEEEeCCCCC---CCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 32 YKDSAYVYVGGIPFD---LTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~---~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
..+...|.|...... .+...|.+++..-| .++.+..-. +-..|.|.+.++..+|.+.|....-.+-.|
T Consensus 32 ygedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~V 103 (127)
T PRK10629 32 RQQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYII 103 (127)
T ss_pred cCCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEE
Confidence 345566777766333 56678888888776 455554432 247899999999999988777665555566
Q ss_pred EEEecc
Q 022420 108 RVDHVA 113 (297)
Q Consensus 108 ~V~~~~ 113 (297)
.+..+.
T Consensus 104 Alnl~p 109 (127)
T PRK10629 104 AQQDDN 109 (127)
T ss_pred EEecCC
Confidence 666554
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.59 E-value=22 Score=25.59 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=23.9
Q ss_pred EEEEecCHHHHHHHHHHhCCc--eeCCeEeEEEecc
Q 022420 80 AFVAYEDQRSTILAVDNLNGA--QILGRTIRVDHVA 113 (297)
Q Consensus 80 afV~f~~~~~a~~A~~~l~g~--~l~g~~i~V~~~~ 113 (297)
|+|+|.+...|+..+ .+..+ .|++..+.|...+
T Consensus 1 AlITF~e~~VA~~i~-~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRIL-KKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHH-hCCEEEEEECCEEEEEEEEe
Confidence 789999999999998 44433 4566666666544
No 174
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.92 E-value=22 Score=29.15 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=37.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC-CCeEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHH
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQC-GEIVDVNLVRDKGTG--KPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~-G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~ 95 (297)
.+||.. +|+++|..+..-. |++..|.+-... .+ ..+|-.||+|.+.++|.++++
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 466654 5566666555422 688888665443 33 567889999999999998874
No 175
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=47.12 E-value=33 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=25.1
Q ss_pred CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022420 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 61 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
.|.++..+.+ .+||-|||=.++.++..|+..+.+...
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccceee
Confidence 4666644433 589999999999999999987776543
No 176
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.46 E-value=96 Score=22.07 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=37.7
Q ss_pred EEEeCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHH
Q 022420 38 VYVGGIPFDLTEGDLLAVFAQ-CG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDN 96 (297)
Q Consensus 38 v~V~nL~~~~~~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 96 (297)
.|+--++..++..+|+..++. || +|..|..+.-+ . ..-=|||.|.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHHh
Confidence 344456888999999988885 55 56676555433 1 223499999887777766543
No 177
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=46.23 E-value=10 Score=32.86 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=57.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHH-H--HHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 31 KYKDSAYVYVGGIPFDLTEGD-L--LAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~-L--~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
..+....+|++++-..+..+- | ...|+.|-.+....++.+. .+...+++|+.|.......++...-++..+.-.+|
T Consensus 92 ~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~V 170 (290)
T KOG0226|consen 92 PAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPV 170 (290)
T ss_pred CCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcce
Confidence 334445666777666655544 3 5677777666666666654 56778999999998888888887667777776666
Q ss_pred EEEeccCc
Q 022420 108 RVDHVAKY 115 (297)
Q Consensus 108 ~V~~~~~~ 115 (297)
++.-.+..
T Consensus 171 R~a~gtsw 178 (290)
T KOG0226|consen 171 RLAAGTSW 178 (290)
T ss_pred eecccccc
Confidence 66554443
No 178
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=45.88 E-value=30 Score=29.66 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhc----cCC-CeEEEEEeecCCCCCCceEEEEEec-CHHHHHHHHHHhCCceeCCeE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFA----QCG-EIVDVNLVRDKGTGKPRGFAFVAYE-DQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~----~~G-~i~~v~i~~~~~~~~~~g~afV~f~-~~~~a~~A~~~l~g~~l~g~~ 106 (297)
.....||||+|...+-.....+.+. +-+ .|+.+.+ .....||+.-... +.++...+|+.+.+..+.-..
T Consensus 35 ~~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~-----~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~v 109 (299)
T KOG4840|consen 35 ESVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQL-----RSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDV 109 (299)
T ss_pred eEEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeec-----cccccccccccccccHHHHHHHHHHhhccCcccce
Confidence 3356899999977543332222222 221 2222222 2223455533333 577778888866666554444
Q ss_pred eEEEec
Q 022420 107 IRVDHV 112 (297)
Q Consensus 107 i~V~~~ 112 (297)
+.|-++
T Consensus 110 VL~GhS 115 (299)
T KOG4840|consen 110 VLVGHS 115 (299)
T ss_pred EEEecC
Confidence 444443
No 179
>PRK11901 hypothetical protein; Reviewed
Probab=45.36 E-value=71 Score=28.85 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEE--EEEecCHHHHHHHHHHhCCc
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFA--FVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~a--fV~f~~~~~a~~A~~~l~g~ 100 (297)
...+||-|..+ ..++.|..|..+++ +..++|+....+|+.- |. |-.|.+.++|..||..|...
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 34456665554 45777888777765 4556666544344332 22 33789999999999888643
No 180
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.26 E-value=23 Score=31.80 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=24.3
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 80 AFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 80 afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
|||+|.+..+|+.|++.+..... ..+.|..|+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC
Confidence 79999999999999975554433 4456666654
No 181
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.64 E-value=11 Score=34.81 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=48.9
Q ss_pred CcEEEEeCCCCCCCH--------HHHHHHhcc--CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 022420 35 SAYVYVGGIPFDLTE--------GDLLAVFAQ--CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~--------~~L~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 95 (297)
...+|+.++....+. ++|..+|.. .+.+..|.+-.+.....+.|-.||+|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 356777777765444 489999998 6788888888887777888999999999999999883
No 182
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.63 E-value=36 Score=32.76 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=44.1
Q ss_pred EEeCCCCCCCH---HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 39 YVGGIPFDLTE---GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 39 ~V~nL~~~~~~---~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
+||||+.-... ..|..+=.+||+|..++|-.- -.|..++.+.|+.|+ .-++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l-~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVL-VKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHH-HhCCccccCCCC
Confidence 47888875433 445555568999998877532 478888999999999 677888888875
No 183
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=43.20 E-value=1.6e+02 Score=23.14 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=50.8
Q ss_pred hHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEEe-CCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEE
Q 022420 3 PLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVG-GIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~-nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~af 81 (297)
+.++...+..+.+..+.......... ....-..+.||. .++..-....+.+.|..+-.|..|..+ +|...-++-
T Consensus 37 ~~tV~~Ri~rL~~~GvI~~~~~~v~~-~~lg~~~~a~v~v~v~~~~~~~~~~~~l~~~p~V~~~~~~----tG~~dl~~~ 111 (153)
T PRK11179 37 PGTIHVRVEKMKQAGIITGTRVDVNP-KQLGYDVCCFIGIILKSAKDYPSALAKLESLDEVVEAYYT----TGHYSIFIK 111 (153)
T ss_pred HHHHHHHHHHHHHCCCeeeEEEEECH-HHcCCCEEEEEEEEEcccccHHHHHHHHhCCCCEEEEEEc----ccCCCEEEE
Confidence 45555566666555444322111111 111112223332 443222345677778888889988877 455566788
Q ss_pred EEecCHHHHHHHH-HHhCC
Q 022420 82 VAYEDQRSTILAV-DNLNG 99 (297)
Q Consensus 82 V~f~~~~~a~~A~-~~l~g 99 (297)
|.+.+.++....+ +.+..
T Consensus 112 v~~~d~~~l~~~~~~~l~~ 130 (153)
T PRK11179 112 VMCRSIDALQHVLINKIQT 130 (153)
T ss_pred EEECCHHHHHHHHHHHhhc
Confidence 8999998888775 34443
No 184
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=42.95 E-value=79 Score=26.58 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
..|......|| |.++ |+.|..++.+.-+.|+.=.+.+.+..|++.+....+...
T Consensus 45 k~F~k~AkKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~~ 98 (204)
T PF12687_consen 45 KEFKKEAKKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKKE 98 (204)
T ss_pred HHHHHHHHHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhhh
Confidence 44445566887 5665 555554544444555555788999999998887766543
No 185
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=42.69 E-value=87 Score=21.21 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHH
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAV 94 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~ 94 (297)
.+|+|-++.-.-....+...+.....|..+.+-... +-++|+|.+ .+....||
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai 60 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAI 60 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHH
Confidence 468888888888888999999988778888776653 459999987 34444444
No 186
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.16 E-value=49 Score=23.68 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=29.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEe
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY 84 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f 84 (297)
..-|||++++..+-+.-...+....+.-.-+ |+.. +....||+|-++
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~--~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWS--DNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEc--cCCCCCEEEEEe
Confidence 4459999999988776666666544433322 3322 122689999877
No 187
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=39.92 E-value=82 Score=32.74 Aligned_cols=11 Identities=0% Similarity=0.154 Sum_probs=4.3
Q ss_pred EEEecCHHHHH
Q 022420 81 FVAYEDQRSTI 91 (297)
Q Consensus 81 fV~f~~~~~a~ 91 (297)
+|.|.-.-+|.
T Consensus 1085 WIklqIshEaA 1095 (1282)
T KOG0921|consen 1085 WIKLQISHEAA 1095 (1282)
T ss_pred eeeEeccHHHH
Confidence 34444333333
No 188
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.54 E-value=1.5e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 50 GDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 50 ~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
+.+.++++.+| +|+.+.+... ..-.++.+++.+.+.|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 55677777765 7888877754 34467788999988888776444
No 189
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=37.24 E-value=1.2e+02 Score=23.04 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=33.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec--C------HHHHHHHHHHhCCceeCCeEeE
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE--D------QRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~------~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.||||++|.....+.|.+. .+..|..|.-.. ......++-|+.|. + ......|+..++...-.|.+|.
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~--~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~Vl 82 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTNEV--PNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVL 82 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccCCC--CCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEE
Confidence 4999999977654444332 333444442211 11123445555554 2 1233445544444444566666
Q ss_pred EE
Q 022420 109 VD 110 (297)
Q Consensus 109 V~ 110 (297)
|.
T Consensus 83 VH 84 (138)
T smart00195 83 VH 84 (138)
T ss_pred EE
Confidence 64
No 190
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=37.07 E-value=1.9e+02 Score=25.01 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=31.8
Q ss_pred ccCCCCcEEEEeCCCCCC--CHHHHHHHhccCCCeE----EEEEeecCCCCCCceEEEEEec
Q 022420 30 AKYKDSAYVYVGGIPFDL--TEGDLLAVFAQCGEIV----DVNLVRDKGTGKPRGFAFVAYE 85 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~--~~~~L~~~F~~~G~i~----~v~i~~~~~~~~~~g~afV~f~ 85 (297)
.-.+....|+|--|..+. |..+|..+|.++|-.. .|.++.+. .++|+|.
T Consensus 89 g~gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 89 GYAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred EEcCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 334666778887777764 6689999999987422 24444443 3666664
No 191
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.82 E-value=23 Score=25.52 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHh
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVF 56 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F 56 (297)
....+|.|.|||..+.+++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 446789999999999999988655
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=36.38 E-value=49 Score=28.96 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=26.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~ 69 (297)
.....|+|||++++..-|..++...-.+..+.++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 45677999999999999999998655554444443
No 193
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=35.91 E-value=1.2e+02 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.6
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 62 IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 62 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
|.+|.++.. ..||.||+....+.+..+|..+.+..
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 666666544 48999999998888888887776543
No 194
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=35.79 E-value=21 Score=32.15 Aligned_cols=8 Identities=0% Similarity=0.023 Sum_probs=3.3
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
|.|.+.++
T Consensus 163 mYiRYtqp 170 (453)
T KOG2888|consen 163 MYIRYTQP 170 (453)
T ss_pred eEEeecCC
Confidence 34444443
No 195
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=35.76 E-value=1.1e+02 Score=22.24 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCCHHHHH---HHhccCCCeEEEEE--eecCCCCCCceEEEEEe
Q 022420 37 YVYVGGIPFDLTEGDLL---AVFAQCGEIVDVNL--VRDKGTGKPRGFAFVAY 84 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~---~~F~~~G~i~~v~i--~~~~~~~~~~g~afV~f 84 (297)
..|+.+||..+.+.++. .+|..+..-..|.+ ..........|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 46899999998886655 55556654444443 12233556677765544
No 196
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=35.75 E-value=1.1e+02 Score=22.65 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=28.1
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 022420 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV 94 (297)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 94 (297)
.+|..+++.+| |..-.|..+.. ...-|+|+++.+.+..-.+|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHH
Confidence 57788889987 66666666542 24569999999555544443
No 197
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=35.45 E-value=1.5e+02 Score=28.68 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=35.4
Q ss_pred CHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 48 TEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 48 ~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
+..+|..+|. .+|-|+.+.|...+. .......++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 3457777775 577888887765543 2334567889999999999887654
No 198
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.83 E-value=1.3e+02 Score=21.09 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=37.1
Q ss_pred EEEeCCCCCCCHHHHHHHhcc-CC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHH
Q 022420 38 VYVGGIPFDLTEGDLLAVFAQ-CG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDN 96 (297)
Q Consensus 38 v~V~nL~~~~~~~~L~~~F~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 96 (297)
.|+-.++..++..+|+..++. |+ +|..|..+.-+ ..--=|||.+..-..|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 445567889999999988885 55 56666544332 1123499999877776665433
No 199
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=32.92 E-value=1.6e+02 Score=19.96 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=29.3
Q ss_pred CHHHHHHHhccCC-CeEEEEEeecCCCCCC-ceEEEEEec-CHHHHHHHHHHhCC
Q 022420 48 TEGDLLAVFAQCG-EIVDVNLVRDKGTGKP-RGFAFVAYE-DQRSTILAVDNLNG 99 (297)
Q Consensus 48 ~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~-~g~afV~f~-~~~~a~~A~~~l~g 99 (297)
.-.++...|..+| .+..| ..-+..+.. .-+-||+|+ ....+++||+.|..
T Consensus 13 ~L~~vL~~f~~~~iNlt~I--eSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHI--ESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEE--ECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4567888888886 34443 322222222 234568877 55567778877754
No 200
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=32.57 E-value=1.4e+02 Score=19.41 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 49 EGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 49 ~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
-.+|.++|.+.| .|.++.+.... . .++.-+.+.+.+.|.++|. -+|..
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~-~~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALK-EAGFA 63 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHH-HCCCE
Confidence 367888888776 67777654432 1 3555666777777777773 34443
No 201
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=31.65 E-value=51 Score=26.36 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV 94 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 94 (297)
..+||.|.-+..--+.--..+|..|- +|..|.+............+.|.+.+..+.++++
T Consensus 87 ~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 87 ELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 34788887755555555668888874 6777777766432445556666666555555443
No 202
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.15 E-value=35 Score=20.10 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhccCCC
Q 022420 45 FDLTEGDLLAVFAQCGE 61 (297)
Q Consensus 45 ~~~~~~~L~~~F~~~G~ 61 (297)
..+++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36899999999988653
No 203
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.83 E-value=62 Score=22.03 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=20.6
Q ss_pred eEEEEEecCHHHHHHHHHHhCCcee
Q 022420 78 GFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 78 g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
.+.+|.|.+...|.+|-+.|....|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999887776554
No 204
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=56 Score=23.95 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.1
Q ss_pred ceEEEEEecCHHHHHHHHHHh
Q 022420 77 RGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 77 ~g~afV~f~~~~~a~~A~~~l 97 (297)
--|++|+|.+.+...+|..+|
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 458999999998888887655
No 205
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.66 E-value=36 Score=24.46 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=25.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCCceEEEEEecC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQ-CGEIVDVNLVRDKGTGKPRGFAFVAYED 86 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~ 86 (297)
..-|||++++..+-+.--..+-+. .+.- .+.|+.. +....||+|-++-.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 445999999987765433333333 2221 2222222 23346788887654
No 206
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=1.2e+02 Score=24.85 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=40.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCce--EEE-EEecCH---HHHHHHHHHhCCceeCCeEeEEE
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRG--FAF-VAYEDQ---RSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g--~af-V~f~~~---~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
+|.|.-=|..++-++|.++|-..-....+ .. .|.-.| |-= |-+.+. ..|++.+++|....+.+++|.++
T Consensus 59 ~V~V~yDp~~isy~~LL~~ff~ihDPT~~--nr---QGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~Ivte 133 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVFFEIHDPTSL--NR---QGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTE 133 (174)
T ss_pred EEEEEeCCccccHHHHHHHHheecCCCCC--Cc---cCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 56666667778999999888653221111 11 111112 222 333344 44555566666656667788777
Q ss_pred eccC
Q 022420 111 HVAK 114 (297)
Q Consensus 111 ~~~~ 114 (297)
+.+.
T Consensus 134 I~p~ 137 (174)
T COG0225 134 IEPA 137 (174)
T ss_pred eecc
Confidence 7554
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.96 E-value=49 Score=28.83 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=25.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhc--cCCCeEEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFA--QCGEIVDV 65 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~--~~G~i~~v 65 (297)
.....++|+|||+.++..-|..++. .||.+.-+
T Consensus 95 ~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred cCCceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 4467789999999999998988887 45544433
No 208
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.07 E-value=82 Score=23.12 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=27.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 86 (297)
..-|||++++..+-+.--..+-+.++.- .+.|+.. +....||+|-++-.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCC
Confidence 3459999999877665444444444332 2223321 22334999988754
No 209
>PRK00110 hypothetical protein; Validated
Probab=27.85 E-value=3.2e+02 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=22.8
Q ss_pred cCCCCcEEEEeCCCCCC--CHHHHHHHhccCCC
Q 022420 31 KYKDSAYVYVGGIPFDL--TEGDLLAVFAQCGE 61 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~--~~~~L~~~F~~~G~ 61 (297)
-.+....|+|--|..+. |..+|..+|.++|-
T Consensus 90 ~gP~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG 122 (245)
T PRK00110 90 YGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGG 122 (245)
T ss_pred EcCCCeEEEEEEecCCHHHHHHHHHHHHHhcCc
Confidence 34566777787777664 66899999998763
No 210
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=27.74 E-value=1.8e+02 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 46 DLTEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 46 ~~~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
.....+|..+|. .+|-|+.+.|-..+. .....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHHH
Confidence 444456777775 377888887766543 334556788999999998887554
No 211
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=27.24 E-value=1.6e+02 Score=21.67 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhc-cCCCeEEEEEee----cCCCCCCceEEEEEecCHHHHHH
Q 022420 46 DLTEGDLLAVFA-QCGEIVDVNLVR----DKGTGKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 46 ~~~~~~L~~~F~-~~G~i~~v~i~~----~~~~~~~~g~afV~f~~~~~a~~ 92 (297)
+.+..+|.+-+. .|+.=..+.|+. ..-.+.+.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 456677776655 455322332332 2223456666665 455555443
No 212
>PRK12378 hypothetical protein; Provisional
Probab=26.75 E-value=3.3e+02 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.4
Q ss_pred cCCCCcEEEEeCCCCCC--CHHHHHHHhccCCC
Q 022420 31 KYKDSAYVYVGGIPFDL--TEGDLLAVFAQCGE 61 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~--~~~~L~~~F~~~G~ 61 (297)
-.+....|+|--|..+. |..+|..+|.++|-
T Consensus 87 ygPgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg 119 (235)
T PRK12378 87 FGPNGVMVIVECLTDNVNRTVANVRSAFNKNGG 119 (235)
T ss_pred EcCCCcEEEEEECCCCHHHHHHHHHHHHhhcCC
Confidence 34566778888787764 66899999998863
No 213
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.57 E-value=16 Score=33.07 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 49 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
...|.+++.++|.|..-.|..-. +.|.+||.+-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 35677777788877654444332 3688899999999999999888865
No 214
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.50 E-value=3.3e+02 Score=21.72 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=37.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc---CCCeEEEEEeecCCC---------CCC-ceEEEEEecCHHH
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQ---CGEIVDVNLVRDKGT---------GKP-RGFAFVAYEDQRS 89 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~---~G~i~~v~i~~~~~~---------~~~-~g~afV~f~~~~~ 89 (297)
.+||+..++..+++++..+..++ .++|+.|.+-..... ... ..|-+|.|++-.-
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 68999999999999988888875 456777766543321 111 2388888887543
No 215
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.93 E-value=1.9e+02 Score=26.44 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=37.5
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 48 TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 48 ~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
+-++|+..|..---+..+....+. -||.|..+-..+.-|-..++..+.+.+|
T Consensus 263 ~Y~~Le~HF~~~hy~ct~qtc~~~--------k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 263 SYEDLEAHFRNAHYCCTFQTCRVG--------KCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred CHHHHHHHhhcCceEEEEEEEecC--------cEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 456788888765445555444432 5889999999888888888888777665
No 216
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=25.13 E-value=1.7e+02 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=27.1
Q ss_pred CceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 76 PRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 76 ~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
-+||-|||-..+..+..||+.|-+.... +.|.|
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lV 241 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLV 241 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec-cEEEE
Confidence 4799999999999999999988877766 44444
No 217
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=24.87 E-value=2.2e+02 Score=19.01 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=30.5
Q ss_pred CHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecC---HHHHHHHHHHhCC
Q 022420 48 TEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYED---QRSTILAVDNLNG 99 (297)
Q Consensus 48 ~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~A~~~l~g 99 (297)
.-..|.+.|..+| .|..|.-.... .....-..||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3467888898886 56665332221 12233456788874 5666777776654
No 218
>PF14893 PNMA: PNMA
Probab=24.74 E-value=69 Score=29.16 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCH
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQ 87 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 87 (297)
.+...|.|.+||.++++.+|++.+. .+|...-+.-+.-.. ...--|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeecccc
Confidence 4556799999999999999998775 344332221111111 1234689998753
No 219
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=24.58 E-value=1.4e+02 Score=22.26 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=28.2
Q ss_pred HHHHhccCCCeEEEEEeec-----CCC----------CCCceEEEEEecCHHHHHHHHHHh
Q 022420 52 LLAVFAQCGEIVDVNLVRD-----KGT----------GKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 52 L~~~F~~~G~i~~v~i~~~-----~~~----------~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
.-++|..||-+..+...-+ +.| +..--|.+|+|.+.+...+|..++
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3488999997655543322 111 223358889999888887777654
No 220
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=24.17 E-value=43 Score=32.57 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhcccccCCCCCCCcCCCccccccCCcCCCcccccCcchhh-hhhccCCCccccccccccccccccCCCCCCCCCCCCc
Q 022420 212 EKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEARSREDH-YRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS 290 (297)
Q Consensus 212 ~~r~r~~~~r~~~r~r~r~r~r~R~R~~~~~~r~~~~~r~~~-~~r~r~r~r~r~R~r~r~r~r~r~~~~~r~~~~~~~~ 290 (297)
....++.......++-.+ ++..+.+..-++++...++..++ ..+.+.|++++-|+..+.++++..+.++...++++.+
T Consensus 114 ~S~erR~re~~krr~~e~-r~~~k~rrsiDR~r~~~r~~~~~~~~~~R~RS~~r~r~~~rer~rd~~re~R~~rdrdrrr 192 (752)
T KOG0670|consen 114 KSPERRDRELRKRRDAER-RELSKERRSIDRDREDNRRDPRHEGNRRRGRSRRRFRNNRRERDRDKRRERRHRRDRDRRR 192 (752)
T ss_pred CChhhcccccccccccch-hhhhhhhhhhhccccccccCcccccccccccchhhhhhhhhhhccccccccccccChhhcc
Q ss_pred ccccccC
Q 022420 291 SHRHRER 297 (297)
Q Consensus 291 ~r~~rdr 297 (297)
....++
T Consensus 193 -d~~~~~ 198 (752)
T KOG0670|consen 193 -DSQPDR 198 (752)
T ss_pred -ccCCch
No 221
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=23.36 E-value=1.9e+02 Score=20.98 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 43 IPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 43 L~~~~~~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
+.+.++...|...|.--|.- +...+-.|.. +.+|-|+|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHH
Confidence 34566777777777655521 1222333322 4689999999999999987663
No 222
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.19 E-value=1.6e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHhccCCCeEEEEEeecC
Q 022420 42 GIPFDLTEGDLLAVFAQCGEIVDVNLVRDK 71 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~ 71 (297)
||+....-.-+++.|+++|.|+--+|+..+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 566666667788999999999988777655
No 223
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=23.08 E-value=1.9e+02 Score=23.91 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC--CCCCceEEEEEecCHHH
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG--TGKPRGFAFVAYEDQRS 89 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~--~~~~~g~afV~f~~~~~ 89 (297)
+-..-+|.|||-... ...|.+....+..-+. +|.++ |.|+.|.....
T Consensus 85 E~lHWlV~nIPg~~~--------~~~G~~i~~Y~~P~Pp~~tG~HR-yVfll~rQ~~~ 133 (185)
T KOG3346|consen 85 EWLHWLVTNIPGTDG--------ISKGQEISEYLGPGPPKGTGLHR-YVFLLYRQPGR 133 (185)
T ss_pred eEEEEEEEeecCCcc--------ccCCeEeeeeeCCCCCCCCCceE-EEEEEEEcCCc
Confidence 344566788887654 3456655555544333 55555 88888875443
No 224
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=22.90 E-value=2e+02 Score=24.76 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=43.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCC--CCCCceEEEEEecCHHHHHHHHHHh
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKG--TGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v-~i~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
+-.-+|-|.-||..-.++-++.+|++.|--+.+ .+..+.. .....-|..|+..-..-.+.||..|
T Consensus 116 ~~pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 116 PIPLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred CCceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 344578889999999999999999999944333 3444432 1122347778887766666666544
No 225
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=22.71 E-value=1.3e+02 Score=21.55 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=31.1
Q ss_pred CHHHHHHHhccCCCeEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 48 TEGDLLAVFAQCGEIVD--------VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 48 ~~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
..-+++.++..||.-.. +.|+....-.--+|+.=|+|-.+++.+..++.+.
T Consensus 32 d~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 32 DHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred CceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 34456778888885332 2233221122346777899999998888887653
No 226
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=3.1e+02 Score=19.88 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=42.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhc-cCCC-eEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFA-QCGE-IVDVNLVRDKGT-GKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~-~~G~-i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
....++++||. +|-..++-..|.++|. ..|+ ..++.++.+-.. ..-+.=+=..|++-+..++..+++-|.
T Consensus 29 vv~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 29 VVDQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred EecCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 33456677765 7888899999999997 3553 455555544211 000112445677777777777666553
No 227
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.33 E-value=96 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLV 68 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~ 68 (297)
.+.|+|||++++...|..++.....+..+.++
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 47789999999999888888653344443333
No 228
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=22.20 E-value=2.2e+02 Score=18.08 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCH-HHHHHHHHHhC
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQ-RSTILAVDNLN 98 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~ 98 (297)
+|.|..-...-.-.+|..+|..++ .|..+...... +......++++... .....++..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTE--DPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecC--CCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 344432222233467888888876 56666554321 11122233333322 45555555554
No 229
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.18 E-value=1.1e+02 Score=26.44 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=20.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCC
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGE 61 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~ 61 (297)
.++|+|||++++...|..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999975543
No 230
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=21.70 E-value=2.9e+02 Score=19.26 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHh-ccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 42 GIPFDLTEGDLLAVF-AQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 42 nL~~~~~~~~L~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.+|.-+.-++|..-. ..||....+....+. -.|-..+.++..+||+.++. ....+.|+|
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~e--------L~iPl~~Q~DLDkAie~ld~-s~~~ksLRi 74 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNNE--------LLIPLKNQEDLDRAIELLDR-SPHMKSLRI 74 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEeccc--------EEEeccCHHHHHHHHHHHcc-CccccceeE
Confidence 556666667776544 479988888766442 67888999999999987765 333334444
No 231
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=21.64 E-value=98 Score=27.09 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=19.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQ 58 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~ 58 (297)
..++|+|||+.++..-|..++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 36789999999998888888863
No 232
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.13 E-value=45 Score=27.04 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHhccCCCeEEEEEe
Q 022420 44 PFDLTEGDLLAVFAQCGEIVDVNLV 68 (297)
Q Consensus 44 ~~~~~~~~L~~~F~~~G~i~~v~i~ 68 (297)
....+.+-+...|.+||.+.++.++
T Consensus 48 h~~qtAk~wr~~~lqcG~~lS~n~i 72 (185)
T COG3102 48 HQEQTAKRWRRGLLQCGELLSENLI 72 (185)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5566667777888899987665544
No 233
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=2.8e+02 Score=21.20 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCCHHHHHHHhcc-CC---CeEE-EEEeecCCCCCCceEEEEEecCHHHHH
Q 022420 46 DLTEGDLLAVFAQ-CG---EIVD-VNLVRDKGTGKPRGFAFVAYEDQRSTI 91 (297)
Q Consensus 46 ~~~~~~L~~~F~~-~G---~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~ 91 (297)
+++.++|.+-+.+ |- .+.. ..+-...-.|++.|||.| |.+.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 5677777766654 22 1222 223334446788899987 45544443
No 234
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=21.03 E-value=5.3e+02 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=28.1
Q ss_pred CceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 76 PRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 76 ~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
+.|-| +.|+++++|..|| +++..-.|-.|.|.+.-|.
T Consensus 382 ~~G~A-~VF~see~a~~ai--~~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 382 FEGPA-KVFESEEEALEAI--LGGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEEeE-EEECCHHHHHHHH--hcCCCCCCeEEEEeCCCCC
Confidence 34545 5699999999998 4566667889999887665
No 235
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=20.93 E-value=1.3e+02 Score=27.95 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHH
Q 022420 42 GIPFDLTEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILA 93 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 93 (297)
.|-.+-|-.+|+.+|- ..|.|..|.|+..+ ..++...||+-.++-+.++++
T Consensus 231 slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~-kpksvn~af~gi~sf~~v~k~ 285 (511)
T KOG1232|consen 231 SLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPP-KPKSVNVAFIGIESFDDVQKV 285 (511)
T ss_pred hhcccCccccchhheecCCceeeEEeeEEEeecC-CCcceeEEEEccccHHHHHHH
Confidence 4445667788899994 56788888887765 455667789887776666653
No 236
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.49 E-value=1.6e+02 Score=26.99 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=30.9
Q ss_pred CCcEEEEeCCCC----CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC
Q 022420 34 DSAYVYVGGIPF----DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED 86 (297)
Q Consensus 34 ~~~~v~V~nL~~----~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 86 (297)
....|||+|=+- .++.++|..+...... .+.|+.|. ||++|..
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDE--------AY~eF~~ 191 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDE--------AYIEFSP 191 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeC--------chhhcCC
Confidence 467888885432 4688999999998755 33455553 9999998
No 237
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=20.36 E-value=3.2e+02 Score=19.28 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhcc-CC----CeEEEEEeecCCCCCCceEEEEEecCHHHHHH
Q 022420 45 FDLTEGDLLAVFAQ-CG----EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 45 ~~~~~~~L~~~F~~-~G----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 92 (297)
...+..+|.+.+.. |+ .|.-..|....-.+.+.|||+| |.+.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 34566777766653 33 2222234444434556666666 455555443
No 238
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=20.32 E-value=1.9e+02 Score=22.49 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 49 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
|.+|+..|- |.-+.++.++... ....+-+..+.+.. ...+|..|.+..+.+++|.|....
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 455555442 1123445555442 22335555555544 556788899999999999988654
No 239
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=20.22 E-value=99 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=16.5
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhc
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFA 57 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~ 57 (297)
..++...++++.||. .++++.|+.
T Consensus 60 ~ekeg~~i~~g~lPt---~~eVe~Fl~ 83 (105)
T PF09702_consen 60 KEKEGNYIIVGYLPT---DEEVEDFLD 83 (105)
T ss_pred ccCCCCEEecCCCCC---hHHHHHHHH
Confidence 355678899999985 456666554
No 240
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=20.14 E-value=2.9e+02 Score=18.71 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=31.2
Q ss_pred CHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecC---HHHHHHHHHHhCC
Q 022420 48 TEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYED---QRSTILAVDNLNG 99 (297)
Q Consensus 48 ~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~A~~~l~g 99 (297)
.-..|..+|.++| .|..+...... .....-..||+++. ......+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3467888898886 56666544332 22223345677773 5677778777765
No 241
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=20.09 E-value=3.2e+02 Score=22.40 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCCCC--------------CCHHHHHHHhccCCC
Q 022420 33 KDSAYVYVGGIPFD--------------LTEGDLLAVFAQCGE 61 (297)
Q Consensus 33 ~~~~~v~V~nL~~~--------------~~~~~L~~~F~~~G~ 61 (297)
.|-..|||.||... ...+.++++|++|+.
T Consensus 65 ~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe~iF~kya~ 107 (174)
T PF05042_consen 65 DPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFEEIFSKYAK 107 (174)
T ss_pred CCceeEEeecccccccCCCccccccCCcCCHHHHHHHHHHhCC
Confidence 45679999998642 346789999999975
Done!