Query 022420
Match_columns 297
No_of_seqs 280 out of 2225
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 100.0 3.5E-27 1.2E-31 219.6 22.0 86 31-116 98-183 (437)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-22 3.6E-27 151.3 12.5 83 32-114 16-98 (99)
3 3s8s_A Histone-lysine N-methyl 99.9 6.5E-22 2.2E-26 149.8 13.0 85 33-117 4-88 (110)
4 2lxi_A RNA-binding protein 10; 99.8 1E-21 3.5E-26 143.7 6.7 83 35-117 1-85 (91)
5 3md1_A Nuclear and cytoplasmic 99.8 1.3E-20 4.5E-25 135.0 12.4 82 35-116 1-82 (83)
6 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-20 3.7E-25 136.7 11.8 82 33-114 4-85 (87)
7 2cq0_A Eukaryotic translation 99.8 1.2E-20 4.2E-25 141.0 12.4 87 31-117 11-97 (103)
8 2cpz_A CUG triplet repeat RNA- 99.8 9.7E-21 3.3E-25 144.4 12.0 89 29-117 19-107 (115)
9 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-20 6.5E-25 142.8 13.5 89 29-117 9-97 (115)
10 2jrs_A RNA-binding protein 39; 99.8 8.7E-21 3E-25 143.2 11.3 96 20-115 11-106 (108)
11 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-20 4.6E-25 151.5 13.1 87 30-116 34-120 (156)
12 2cqc_A Arginine/serine-rich sp 99.8 1.5E-20 5.1E-25 138.3 12.0 85 30-114 10-94 (95)
13 2x1f_A MRNA 3'-END-processing 99.8 2E-20 6.8E-25 138.0 12.6 86 34-119 1-86 (96)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-20 3.9E-25 136.0 11.0 82 32-113 4-85 (85)
15 2lkz_A RNA-binding protein 5; 99.8 4E-21 1.4E-25 141.4 8.7 83 32-114 6-94 (95)
16 1x5u_A Splicing factor 3B subu 99.8 1.1E-20 3.9E-25 141.6 11.2 88 30-117 10-97 (105)
17 2la6_A RNA-binding protein FUS 99.8 1.3E-20 4.6E-25 139.8 11.4 87 27-113 5-99 (99)
18 2dnz_A Probable RNA-binding pr 99.8 1.6E-20 5.4E-25 138.2 11.4 84 33-116 3-86 (95)
19 1p27_B RNA-binding protein 8A; 99.8 1.2E-20 4.2E-25 141.7 10.9 87 30-116 18-104 (106)
20 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-20 8.1E-25 139.9 12.5 88 29-117 9-99 (105)
21 1whw_A Hypothetical protein ri 99.8 1.7E-20 5.8E-25 139.2 11.5 86 32-117 5-90 (99)
22 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-20 7.7E-25 137.1 12.0 84 30-113 11-94 (94)
23 2dgs_A DAZ-associated protein 99.8 1.9E-20 6.6E-25 138.9 11.6 86 31-117 6-91 (99)
24 2dnm_A SRP46 splicing factor; 99.8 7.5E-21 2.6E-25 142.1 9.4 88 30-117 8-95 (103)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.5E-25 141.1 9.9 87 31-117 8-94 (102)
26 2do4_A Squamous cell carcinoma 99.8 3.3E-20 1.1E-24 137.9 12.6 85 31-116 13-97 (100)
27 1x5t_A Splicing factor 3B subu 99.8 1.4E-20 4.7E-25 138.8 10.1 85 33-117 3-88 (96)
28 1oo0_B CG8781-PA, drosophila Y 99.8 2E-20 6.8E-25 141.5 11.2 87 30-116 21-107 (110)
29 2cph_A RNA binding motif prote 99.8 2.3E-20 7.9E-25 140.3 11.4 89 29-117 9-99 (107)
30 3ex7_B RNA-binding protein 8A; 99.8 1.1E-20 3.7E-25 146.5 9.7 88 29-116 16-103 (126)
31 1x4h_A RNA-binding protein 28; 99.8 3E-20 1E-24 140.7 11.9 88 30-117 10-103 (111)
32 3ulh_A THO complex subunit 4; 99.8 4E-20 1.4E-24 139.1 12.1 83 30-113 24-106 (107)
33 4f25_A Polyadenylate-binding p 99.8 3.1E-20 1E-24 141.8 11.5 81 35-117 5-85 (115)
34 2dng_A Eukaryotic translation 99.8 5.6E-20 1.9E-24 137.4 12.7 85 30-116 10-94 (103)
35 3p5t_L Cleavage and polyadenyl 99.8 4.5E-21 1.5E-25 139.9 6.5 82 36-117 2-85 (90)
36 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-20 5E-25 140.3 9.3 87 30-116 7-93 (102)
37 2d9p_A Polyadenylate-binding p 99.8 4E-20 1.4E-24 138.1 11.5 85 31-117 11-95 (103)
38 2khc_A Testis-specific RNP-typ 99.8 3.3E-20 1.1E-24 142.1 11.2 83 30-112 35-117 (118)
39 2cpf_A RNA binding motif prote 99.8 2.8E-20 9.6E-25 137.7 10.3 85 33-117 3-90 (98)
40 3s7r_A Heterogeneous nuclear r 99.8 7E-20 2.4E-24 132.5 12.0 82 30-112 6-87 (87)
41 2cpe_A RNA-binding protein EWS 99.8 4.5E-20 1.5E-24 140.2 11.4 87 30-116 10-104 (113)
42 1wi8_A EIF-4B, eukaryotic tran 99.8 6.1E-20 2.1E-24 137.4 11.7 85 31-117 11-96 (104)
43 4a8x_A RNA-binding protein wit 99.8 3.9E-20 1.3E-24 134.0 10.2 83 34-116 3-86 (88)
44 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.1E-19 3.7E-24 135.8 12.9 86 30-117 10-95 (103)
45 2dgp_A Bruno-like 4, RNA bindi 99.8 2.7E-20 9.3E-25 139.8 9.5 87 30-116 8-97 (106)
46 3ns6_A Eukaryotic translation 99.8 7E-21 2.4E-25 141.7 6.2 82 33-114 4-92 (100)
47 2ywk_A Putative RNA-binding pr 99.8 6.3E-20 2.2E-24 134.9 11.3 83 31-114 12-94 (95)
48 2div_A TRNA selenocysteine ass 99.8 3.5E-20 1.2E-24 137.4 9.9 85 32-116 6-95 (99)
49 2kxn_B Transformer-2 protein h 99.8 3E-20 1E-24 144.7 9.8 87 30-116 41-127 (129)
50 2rs2_A Musashi-1, RNA-binding 99.8 4.2E-20 1.4E-24 139.6 10.3 95 22-117 12-106 (109)
51 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.8E-24 134.4 13.8 86 30-117 10-95 (103)
52 2cqd_A RNA-binding region cont 99.8 9.5E-20 3.3E-24 139.1 12.2 85 30-115 12-96 (116)
53 3n9u_C Cleavage and polyadenyl 99.8 7.6E-20 2.6E-24 147.0 11.9 83 34-116 54-138 (156)
54 3ucg_A Polyadenylate-binding p 99.8 1.1E-19 3.7E-24 131.9 11.6 81 34-115 5-85 (89)
55 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8E-20 2.7E-24 148.4 11.9 87 31-117 68-154 (165)
56 2fy1_A RNA-binding motif prote 99.8 6.1E-20 2.1E-24 140.3 10.5 84 32-116 4-87 (116)
57 2cqp_A RNA-binding protein 12; 99.8 5.5E-20 1.9E-24 136.1 9.9 84 31-114 11-94 (98)
58 2do0_A HnRNP M, heterogeneous 99.8 2.3E-19 7.9E-24 136.5 13.4 86 30-116 10-95 (114)
59 1u6f_A Tcubp1, RNA-binding pro 99.8 9.8E-20 3.4E-24 143.5 11.6 87 30-116 37-123 (139)
60 2ek1_A RNA-binding protein 12; 99.8 3.9E-20 1.3E-24 136.1 8.4 82 32-113 12-93 (95)
61 2dgx_A KIAA0430 protein; RRM d 99.8 1E-19 3.6E-24 134.2 10.7 83 31-116 5-91 (96)
62 2dhg_A TRNA selenocysteine ass 99.8 6E-20 2.1E-24 137.4 9.2 85 31-116 5-91 (104)
63 2cq4_A RNA binding motif prote 99.8 3.7E-20 1.3E-24 141.0 8.1 81 33-114 23-103 (114)
64 2kn4_A Immunoglobulin G-bindin 99.8 1.7E-19 5.8E-24 145.2 12.4 87 31-117 66-152 (158)
65 1p1t_A Cleavage stimulation fa 99.8 2.3E-20 8E-25 139.6 6.8 86 33-118 6-91 (104)
66 1s79_A Lupus LA protein; RRM, 99.8 5.9E-20 2E-24 137.3 8.6 81 32-114 8-88 (103)
67 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.7E-20 9.3E-25 138.4 6.8 87 27-115 11-98 (100)
68 1sjq_A Polypyrimidine tract-bi 99.8 7E-20 2.4E-24 136.5 8.9 80 32-117 13-94 (105)
69 1x4a_A Splicing factor, argini 99.8 3.9E-19 1.3E-23 134.2 12.9 84 30-116 17-100 (109)
70 1x4d_A Matrin 3; structural ge 99.8 7.9E-20 2.7E-24 136.0 8.9 81 30-116 10-93 (102)
71 3r27_A HnRNP L, heterogeneous 99.8 1.7E-19 5.8E-24 133.1 10.5 80 31-116 17-98 (100)
72 2cqg_A TDP-43, TAR DNA-binding 99.8 4.4E-19 1.5E-23 132.4 13.0 86 29-116 9-94 (103)
73 2dgw_A Probable RNA-binding pr 99.8 3E-19 1E-23 130.3 11.7 84 30-116 5-88 (91)
74 1x4b_A Heterogeneous nuclear r 99.8 7.5E-20 2.6E-24 139.7 8.8 84 32-116 24-107 (116)
75 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-19 5.7E-24 131.8 10.3 83 32-116 5-87 (92)
76 2dh8_A DAZ-associated protein 99.8 8.9E-20 3E-24 136.7 9.0 86 31-117 12-97 (105)
77 2cq1_A PTB-like protein L; RRM 99.8 4.8E-19 1.6E-23 131.7 12.5 82 30-117 10-93 (101)
78 2cpi_A CCR4-NOT transcription 99.8 1.9E-19 6.4E-24 136.5 10.5 86 31-116 11-102 (111)
79 1x4e_A RNA binding motif, sing 99.8 3.5E-20 1.2E-24 133.5 6.0 80 33-112 3-82 (85)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.2E-19 1.1E-23 140.5 12.0 83 30-112 58-140 (140)
81 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-19 6.2E-24 128.6 9.2 73 34-112 6-78 (89)
82 1x5o_A RNA binding motif, sing 99.8 4.6E-19 1.6E-23 134.8 12.1 84 30-114 20-111 (114)
83 2jwn_A Embryonic polyadenylate 99.8 4.5E-20 1.5E-24 142.6 6.1 83 33-116 34-116 (124)
84 1x4c_A Splicing factor, argini 99.8 4.5E-19 1.5E-23 133.7 11.3 78 32-116 12-94 (108)
85 2err_A Ataxin-2-binding protei 99.8 2.9E-19 1E-23 135.0 10.2 85 29-115 23-107 (109)
86 2kt5_A RNA and export factor-b 99.8 4.1E-19 1.4E-23 137.2 11.0 86 31-117 31-116 (124)
87 2nlw_A Eukaryotic translation 99.8 2.8E-19 9.5E-24 134.2 9.6 83 32-116 12-101 (105)
88 2dis_A Unnamed protein product 99.8 2.5E-19 8.7E-24 135.1 9.4 86 32-117 5-94 (109)
89 2mss_A Protein (musashi1); RNA 99.8 9.6E-20 3.3E-24 128.0 6.6 75 37-112 1-75 (75)
90 2m2b_A RNA-binding protein 10; 99.8 5.3E-20 1.8E-24 143.7 5.8 85 31-116 19-109 (131)
91 2ad9_A Polypyrimidine tract-bi 99.8 3.4E-19 1.2E-23 136.0 9.9 81 31-117 27-109 (119)
92 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.3E-24 136.5 8.6 83 31-115 11-94 (114)
93 1wex_A Hypothetical protein (r 99.8 5.5E-19 1.9E-23 132.1 10.2 80 31-116 11-92 (104)
94 1wg5_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 132.2 10.2 84 30-115 10-94 (104)
95 2xnq_A Nuclear polyadenylated 99.8 1.2E-18 4.2E-23 128.7 11.8 83 25-115 12-95 (97)
96 2fc9_A NCL protein; structure 99.8 1E-18 3.5E-23 130.0 11.4 82 31-116 11-92 (101)
97 1wez_A HnRNP H', FTP-3, hetero 99.8 3.9E-19 1.3E-23 132.6 9.0 81 31-114 11-91 (102)
98 2lea_A Serine/arginine-rich sp 99.8 1E-19 3.4E-24 142.9 5.9 88 30-117 42-129 (135)
99 1wel_A RNA-binding protein 12; 99.8 1.3E-19 4.5E-24 140.1 6.4 85 31-116 21-105 (124)
100 2db1_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 135.1 10.1 83 30-114 12-97 (118)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.4E-24 127.4 6.2 76 36-112 1-76 (77)
102 2a3j_A U1 small nuclear ribonu 99.8 5.2E-19 1.8E-23 137.0 9.7 84 30-116 24-111 (127)
103 2cpj_A Non-POU domain-containi 99.8 8.8E-19 3E-23 129.9 10.3 81 30-116 10-90 (99)
104 2jvr_A Nucleolar protein 3; RN 99.8 5.1E-19 1.8E-23 133.7 9.0 82 30-115 23-105 (111)
105 2ki2_A SS-DNA binding protein 99.8 7.9E-20 2.7E-24 133.1 4.4 81 36-117 2-82 (90)
106 2fc8_A NCL protein; structure 99.8 1.5E-18 5E-23 129.3 11.4 84 30-116 10-93 (102)
107 2dnq_A RNA-binding protein 4B; 99.8 1.1E-18 3.9E-23 126.9 10.5 78 32-117 5-82 (90)
108 3q2s_C Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 152.1 8.9 83 34-116 67-151 (229)
109 1why_A Hypothetical protein ri 99.8 8.5E-19 2.9E-23 129.5 9.9 80 31-116 13-94 (97)
110 2jvo_A Nucleolar protein 3; nu 99.8 1.1E-18 3.6E-23 131.7 10.4 81 29-117 25-105 (108)
111 2e5j_A Methenyltetrahydrofolat 99.8 9.4E-19 3.2E-23 129.3 9.8 82 30-116 14-95 (97)
112 2ytc_A PRE-mRNA-splicing facto 99.8 1.7E-18 5.9E-23 124.5 10.6 78 30-113 7-85 (85)
113 2cpd_A Apobec-1 stimulating pr 99.8 3.6E-18 1.2E-22 126.6 12.6 79 30-116 10-90 (99)
114 2krb_A Eukaryotic translation 99.8 2.6E-19 8.8E-24 127.8 6.1 73 35-109 1-80 (81)
115 2cpx_A Hypothetical protein FL 99.8 2.1E-19 7.2E-24 136.9 5.7 86 32-117 22-107 (115)
116 1fj7_A Nucleolin RBD1, protein 99.8 9.7E-20 3.3E-24 135.6 3.6 84 31-116 13-96 (101)
117 1wf1_A RNA-binding protein RAL 99.8 1.5E-18 5.1E-23 131.2 10.2 80 29-116 21-101 (110)
118 2hgl_A HNRPF protein, heteroge 99.8 5.8E-19 2E-23 138.3 8.0 83 30-114 39-124 (136)
119 2dgu_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 129.0 10.4 78 32-117 8-85 (103)
120 1nu4_A U1A RNA binding domain; 99.8 7E-19 2.4E-23 129.8 7.9 84 31-117 4-91 (97)
121 2dgt_A RNA-binding protein 30; 99.8 3E-18 1E-22 125.2 11.1 79 30-116 5-83 (92)
122 4f02_A Polyadenylate-binding p 99.8 2.7E-18 9.1E-23 145.0 12.3 85 32-116 12-96 (213)
123 1x4g_A Nucleolysin TIAR; struc 99.8 2.5E-18 8.5E-23 129.7 10.7 81 31-117 21-101 (109)
124 2dnn_A RNA-binding protein 12; 99.8 1.5E-18 5.3E-23 130.8 9.5 78 34-114 15-92 (109)
125 2f3j_A RNA and export factor b 99.8 1.3E-18 4.4E-23 142.8 9.7 85 32-117 85-169 (177)
126 1fjc_A Nucleolin RBD2, protein 99.8 8.8E-19 3E-23 129.0 7.9 82 30-116 11-92 (96)
127 3md3_A Nuclear and cytoplasmic 99.8 6.8E-18 2.3E-22 136.0 13.6 84 30-113 82-165 (166)
128 1x4f_A Matrin 3; structural ge 99.8 9E-19 3.1E-23 132.2 7.6 81 31-117 21-104 (112)
129 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-18 6.3E-23 131.7 9.4 82 32-116 5-86 (115)
130 2dnp_A RNA-binding protein 14; 99.8 3E-18 1E-22 124.7 10.2 78 31-116 5-82 (90)
131 2lcw_A RNA-binding protein FUS 99.6 4.4E-20 1.5E-24 141.1 0.0 85 32-116 4-96 (116)
132 1iqt_A AUF1, heterogeneous nuc 99.8 3.9E-19 1.3E-23 124.8 4.8 75 37-112 1-75 (75)
133 2la4_A Nuclear and cytoplasmic 99.8 2.4E-18 8.1E-23 128.0 9.0 77 32-114 24-100 (101)
134 2lmi_A GRSF-1, G-rich sequence 99.8 4.8E-19 1.6E-23 133.3 5.2 83 30-114 6-91 (107)
135 3egn_A RNA-binding protein 40; 99.8 6E-19 2.1E-23 139.7 5.7 85 32-119 42-134 (143)
136 2kvi_A Nuclear polyadenylated 99.8 2.1E-18 7.1E-23 127.2 8.2 79 31-117 6-85 (96)
137 1whx_A Hypothetical protein ri 99.7 1.9E-18 6.4E-23 131.0 7.7 78 32-115 7-84 (111)
138 2hvz_A Splicing factor, argini 99.7 1.7E-18 5.7E-23 128.8 7.1 76 36-116 1-76 (101)
139 1x5p_A Negative elongation fac 99.7 2.4E-17 8.1E-22 121.7 12.7 80 30-117 10-89 (97)
140 2xs2_A Deleted in azoospermia- 99.7 2E-18 6.7E-23 128.7 6.9 81 33-116 7-87 (102)
141 2e44_A Insulin-like growth fac 99.7 5.4E-18 1.8E-22 124.8 8.7 81 31-115 11-92 (96)
142 2g4b_A Splicing factor U2AF 65 99.7 1.5E-17 5.2E-22 135.0 12.1 80 33-112 92-171 (172)
143 2j8a_A Histone-lysine N-methyl 99.7 7.5E-18 2.5E-22 128.2 9.3 82 36-117 3-98 (136)
144 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4.1E-22 122.5 10.2 79 32-116 5-83 (94)
145 2cqh_A IGF-II mRNA-binding pro 99.7 4.4E-18 1.5E-22 124.6 7.7 78 32-116 5-84 (93)
146 2i2y_A Fusion protein consists 99.7 7.8E-18 2.7E-22 134.3 9.9 81 30-115 68-148 (150)
147 3beg_B Splicing factor, argini 99.7 3.4E-18 1.1E-22 130.4 7.2 74 33-113 14-92 (115)
148 2hgn_A Heterogeneous nuclear r 99.7 8.8E-19 3E-23 137.8 3.9 84 30-116 41-124 (139)
149 2qfj_A FBP-interacting repress 99.7 2.5E-17 8.7E-22 138.6 13.1 85 32-116 122-206 (216)
150 2hgm_A HNRPF protein, heteroge 99.7 4.5E-18 1.6E-22 131.3 7.7 81 31-114 38-120 (126)
151 1fxl_A Paraneoplastic encephal 99.7 2.6E-17 8.8E-22 132.7 12.5 83 34-116 1-83 (167)
152 2dha_A FLJ20171 protein; RRM d 99.7 2.9E-18 1E-22 132.0 6.3 81 32-114 20-104 (123)
153 1l3k_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 140.2 8.5 85 31-116 9-93 (196)
154 2cq2_A Hypothetical protein LO 99.7 7.8E-18 2.7E-22 127.2 8.0 79 31-115 21-106 (114)
155 1wg1_A KIAA1579 protein, homol 99.7 1.3E-17 4.6E-22 120.8 8.9 76 34-116 4-79 (88)
156 4f02_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 141.1 9.8 81 33-115 101-181 (213)
157 1b7f_A Protein (SXL-lethal pro 99.7 2.2E-17 7.4E-22 133.4 11.0 83 34-116 2-84 (168)
158 2diu_A KIAA0430 protein; struc 99.7 1.4E-17 4.8E-22 120.0 8.6 75 32-116 5-85 (96)
159 1b7f_A Protein (SXL-lethal pro 99.7 5.9E-17 2E-21 130.9 11.9 81 32-112 86-168 (168)
160 3d2w_A TAR DNA-binding protein 99.7 4.3E-17 1.5E-21 118.4 9.8 78 30-116 6-85 (89)
161 3zzy_A Polypyrimidine tract-bi 99.7 7.8E-17 2.7E-21 124.4 11.5 79 33-116 26-107 (130)
162 1sjr_A Polypyrimidine tract-bi 99.7 3.7E-17 1.3E-21 131.0 9.9 79 34-116 45-125 (164)
163 2yh0_A Splicing factor U2AF 65 99.7 9E-17 3.1E-21 133.4 12.7 85 33-117 112-196 (198)
164 2dnl_A Cytoplasmic polyadenyla 99.7 3.4E-17 1.2E-21 124.5 9.0 80 32-114 5-87 (114)
165 3nmr_A Cugbp ELAV-like family 99.7 6E-17 2.1E-21 131.6 11.1 79 33-112 93-174 (175)
166 2cjk_A Nuclear polyadenylated 99.7 1.1E-17 3.9E-22 135.1 6.6 82 33-115 85-166 (167)
167 1l3k_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 132.0 12.5 84 33-117 102-185 (196)
168 1fxl_A Paraneoplastic encephal 99.7 1E-16 3.4E-21 129.2 11.2 81 32-112 85-167 (167)
169 2bz2_A Negative elongation fac 99.7 6.4E-17 2.2E-21 124.3 9.4 80 30-117 34-113 (121)
170 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 8E-21 118.0 12.0 83 32-114 5-93 (105)
171 3tyt_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 134.5 11.0 77 33-114 2-79 (205)
172 2e5i_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 121.4 11.5 78 33-116 21-103 (124)
173 2hzc_A Splicing factor U2AF 65 99.7 8.3E-17 2.8E-21 116.1 8.8 72 33-111 4-86 (87)
174 2qfj_A FBP-interacting repress 99.7 2E-16 6.9E-21 133.0 12.2 87 32-118 25-111 (216)
175 3md3_A Nuclear and cytoplasmic 99.7 1.7E-16 5.9E-21 127.6 10.7 80 36-116 1-80 (166)
176 3smz_A Protein raver-1, ribonu 99.7 7.2E-16 2.4E-20 135.5 14.2 90 30-120 179-269 (284)
177 2voo_A Lupus LA protein; RNA-b 99.7 1.2E-15 4E-20 126.8 14.1 79 35-115 109-187 (193)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 8.8E-17 3E-21 116.4 6.2 77 33-116 3-79 (88)
179 3nmr_A Cugbp ELAV-like family 99.7 3.6E-16 1.2E-20 127.0 10.2 83 34-116 2-89 (175)
180 1fje_B Nucleolin RBD12, protei 99.7 3.7E-16 1.3E-20 127.2 10.1 78 32-114 96-173 (175)
181 2cjk_A Nuclear polyadenylated 99.6 3.3E-16 1.1E-20 126.4 8.6 79 34-114 2-80 (167)
182 3smz_A Protein raver-1, ribonu 99.6 1.9E-15 6.5E-20 132.7 13.0 85 32-116 92-176 (284)
183 3pgw_A U1-A; protein-RNA compl 99.6 1.2E-15 4.2E-20 133.8 11.7 83 31-116 5-91 (282)
184 3u1l_A PRE-mRNA-splicing facto 99.6 4.1E-16 1.4E-20 132.9 8.3 80 31-116 130-230 (240)
185 2ghp_A U4/U6 snRNA-associated 99.6 9.3E-16 3.2E-20 135.3 10.8 83 32-115 207-291 (292)
186 2dit_A HIV TAT specific factor 99.6 4.2E-15 1.4E-19 112.6 11.5 83 30-116 10-103 (112)
187 2adc_A Polypyrimidine tract-bi 99.6 1.5E-15 5.3E-20 129.4 10.2 81 30-115 29-110 (229)
188 3pgw_A U1-A; protein-RNA compl 99.6 4.1E-15 1.4E-19 130.5 11.8 78 31-113 203-281 (282)
189 3v4m_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 111.6 9.2 82 33-114 3-96 (105)
190 2adc_A Polypyrimidine tract-bi 99.6 4.8E-15 1.7E-19 126.3 11.3 78 32-114 148-227 (229)
191 1qm9_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 124.1 9.5 78 32-114 117-196 (198)
192 3sde_A Paraspeckle component 1 99.6 1.3E-14 4.3E-19 126.2 12.4 83 32-115 93-179 (261)
193 3tyt_A Heterogeneous nuclear r 99.6 3E-15 1E-19 125.5 8.1 78 33-112 121-204 (205)
194 3sde_A Paraspeckle component 1 99.6 7E-15 2.4E-19 127.8 10.7 79 30-114 17-95 (261)
195 3ue2_A Poly(U)-binding-splicin 99.6 1E-14 3.5E-19 111.2 9.8 82 33-114 18-108 (118)
196 1fje_B Nucleolin RBD12, protei 99.6 8.5E-16 2.9E-20 125.1 3.7 84 31-116 9-92 (175)
197 1jmt_A Splicing factor U2AF 35 99.6 1.8E-15 6E-20 113.1 5.0 73 40-113 20-104 (104)
198 1qm9_A Polypyrimidine tract-bi 99.6 3.8E-15 1.3E-19 123.8 7.0 77 34-115 2-79 (198)
199 2ghp_A U4/U6 snRNA-associated 99.6 1.3E-14 4.6E-19 127.8 10.9 87 30-117 112-199 (292)
200 2g4b_A Splicing factor U2AF 65 99.5 3E-14 1E-18 115.4 9.6 77 33-116 2-89 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 6.2E-14 2.1E-18 116.1 9.5 75 34-115 3-88 (198)
202 3tht_A Alkylated DNA repair pr 99.5 9.6E-14 3.3E-18 124.4 10.2 80 28-113 11-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.4E-17 99.1 10.5 65 45-116 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.4 5.7E-13 2E-17 100.8 10.1 78 33-114 5-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 4.8E-12 1.6E-16 90.3 8.3 74 32-114 4-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 4.7E-12 1.6E-16 96.1 8.7 78 31-114 14-95 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 3.2E-11 1.1E-15 86.4 5.2 74 30-112 10-92 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.5E-09 5.2E-14 91.6 9.9 68 47-114 141-212 (222)
209 3pgw_S U1-70K; protein-RNA com 98.8 4.1E-09 1.4E-13 97.8 6.9 14 52-65 9-22 (437)
210 2l9w_A U4/U6 snRNA-associated- 98.7 5.5E-08 1.9E-12 71.0 8.9 74 33-112 19-97 (117)
211 1wey_A Calcipressin 1; structu 98.1 6.3E-06 2.2E-10 59.9 6.9 75 35-115 5-84 (104)
212 1uw4_A UPF3X; nonsense mediate 98.1 6.5E-05 2.2E-09 53.6 10.8 81 36-116 2-89 (91)
213 2dhx_A Poly (ADP-ribose) polym 98.0 3.6E-05 1.2E-09 55.7 9.2 72 34-114 7-83 (104)
214 1whv_A Poly(A)-specific ribonu 97.8 7.9E-05 2.7E-09 53.3 7.4 56 34-98 15-70 (100)
215 3ctr_A Poly(A)-specific ribonu 97.8 4.1E-05 1.4E-09 54.9 5.7 54 36-98 7-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 97.7 0.00023 7.9E-09 53.1 8.8 72 33-112 22-94 (119)
217 2l08_A Regulator of nonsense t 97.7 0.00012 4.2E-09 52.5 7.0 82 34-115 8-96 (97)
218 3p3d_A Nucleoporin 53; structu 97.0 0.00083 2.8E-08 50.8 4.6 77 35-113 7-97 (132)
219 2kn4_A Immunoglobulin G-bindin 96.8 0.0032 1.1E-07 49.3 7.0 34 64-99 2-35 (158)
220 3pq1_A Poly(A) RNA polymerase; 96.6 0.00097 3.3E-08 61.7 3.4 55 35-95 53-107 (464)
221 2i2y_A Fusion protein consists 96.2 0.0028 9.6E-08 49.3 3.1 41 73-114 9-50 (150)
222 3d45_A Poly(A)-specific ribonu 93.3 0.21 7E-06 46.9 7.7 56 35-99 440-495 (507)
223 2g0c_A ATP-dependent RNA helic 86.5 1.3 4.4E-05 29.7 5.1 67 37-112 2-74 (76)
224 4f25_A Polyadenylate-binding p 83.0 0.3 1E-05 35.7 0.6 20 32-51 94-113 (115)
225 4e8u_A Putative uncharacterize 78.4 9.5 0.00032 30.0 7.8 56 36-94 13-80 (172)
226 4eyt_A Telomerase associated p 77.9 15 0.0005 25.5 10.2 71 32-110 9-86 (129)
227 2cfx_A HTH-type transcriptiona 66.4 38 0.0013 25.2 8.9 53 42-99 72-124 (144)
228 3fry_A Probable copper-exporti 63.8 21 0.00071 22.8 6.0 55 36-97 7-61 (73)
229 2cg4_A Regulatory protein ASNC 58.1 40 0.0014 25.2 7.5 53 42-98 75-128 (152)
230 3i4p_A Transcriptional regulat 57.5 60 0.0021 24.6 10.4 91 2-97 30-123 (162)
231 2e1c_A Putative HTH-type trans 56.8 66 0.0022 24.8 10.8 89 3-97 55-144 (171)
232 2cyy_A Putative HTH-type trans 54.1 65 0.0022 24.0 10.8 91 3-99 35-126 (151)
233 3lpe_A Putative transcription 52.9 31 0.0011 23.8 5.5 35 61-100 39-73 (92)
234 2lea_A Serine/arginine-rich sp 50.1 15 0.00051 27.2 3.7 28 78-105 5-32 (135)
235 1i1g_A Transcriptional regulat 48.5 76 0.0026 23.1 8.5 48 48-99 76-124 (141)
236 3fut_A Dimethyladenosine trans 48.2 29 0.00099 29.3 5.6 34 35-69 110-143 (271)
237 3dxs_X Copper-transporting ATP 46.5 52 0.0018 20.6 6.4 56 36-97 4-63 (74)
238 2w25_A Probable transcriptiona 46.4 76 0.0026 23.5 7.4 44 50-97 82-125 (150)
239 3h7h_B Transcription elongatio 43.3 33 0.0011 24.5 4.4 36 61-101 40-75 (106)
240 2p5v_A Transcriptional regulat 40.7 1.1E+02 0.0039 22.9 7.9 46 49-98 85-131 (162)
241 4bby_A Alkyldihydroxyacetoneph 39.2 22 0.00074 34.2 3.8 56 41-97 349-408 (658)
242 4a4j_A Pacszia, cation-transpo 37.3 50 0.0017 20.3 4.3 54 36-95 4-60 (69)
243 2cu1_A Mitogen-activated prote 36.5 29 0.001 24.5 3.1 51 42-100 23-74 (103)
244 3uzu_A Ribosomal RNA small sub 34.1 16 0.00056 30.9 1.8 35 35-69 114-148 (279)
245 1yg0_A COP associated protein; 33.3 76 0.0026 18.7 5.6 55 37-97 4-61 (66)
246 2g9o_A Copper-transporting ATP 32.8 83 0.0029 20.8 5.1 56 36-97 5-64 (90)
247 1xn9_A 30S ribosomal protein S 32.5 82 0.0028 22.3 5.0 48 45-93 28-80 (101)
248 2pn6_A ST1022, 150AA long hypo 31.9 1.5E+02 0.0052 21.7 10.0 93 2-99 30-125 (150)
249 3tqs_A Ribosomal RNA small sub 31.4 39 0.0013 28.1 3.7 33 37-69 98-130 (255)
250 2npt_B Mitogen-activated prote 31.3 1.2E+02 0.0042 21.1 5.5 49 42-98 35-84 (100)
251 2dbb_A Putative HTH-type trans 31.0 82 0.0028 23.3 5.3 46 49-98 82-129 (151)
252 2lsl_A Telomerase associated p 36.7 11 0.00036 26.4 0.0 70 30-99 13-99 (137)
253 1ywx_A 30S ribosomal protein S 30.1 98 0.0034 21.9 5.0 47 45-92 28-79 (102)
254 2l3m_A Copper-ION-binding prot 29.6 95 0.0032 18.7 6.9 56 36-97 7-66 (71)
255 3ts2_A Protein LIN-28 homolog 29.0 8.7 0.0003 29.4 -0.7 28 50-85 2-29 (148)
256 2ia0_A Putative HTH-type trans 28.8 1.3E+02 0.0043 23.1 6.1 47 48-99 96-143 (171)
257 3ftd_A Dimethyladenosine trans 28.8 62 0.0021 26.7 4.5 32 36-67 96-127 (249)
258 2xmw_A PACS-N, cation-transpor 27.8 1E+02 0.0035 18.4 6.3 55 37-97 6-63 (71)
259 2v94_A RPS24, 30S ribosomal pr 27.4 1.1E+02 0.0036 21.9 4.9 46 46-92 38-88 (107)
260 1qyr_A KSGA, high level kasuga 27.3 42 0.0015 27.8 3.2 33 36-68 91-123 (252)
261 2ofg_X Zinc-transporting ATPas 27.3 1.6E+02 0.0053 20.4 7.1 56 36-97 10-69 (111)
262 2lfv_A Protein DAMX; cell divi 33.0 13 0.00046 26.6 0.0 63 35-101 25-88 (106)
263 2exu_A Transcription initiatio 26.5 36 0.0012 27.4 2.5 36 62-102 139-174 (200)
264 1q8l_A Copper-transporting ATP 26.1 1.3E+02 0.0045 19.2 7.3 56 36-97 11-70 (84)
265 1p6t_A Potential copper-transp 25.7 1.8E+02 0.006 20.9 6.3 13 88-100 90-102 (151)
266 2dzr_A General transcription f 25.5 1.2E+02 0.004 21.2 4.6 51 15-65 21-79 (99)
267 1aw0_A Menkes copper-transport 25.3 1.1E+02 0.0036 18.5 4.4 55 37-97 6-64 (72)
268 2kt2_A Mercuric reductase; nme 25.2 1.2E+02 0.0039 18.2 6.1 54 37-96 3-59 (69)
269 3swz_A Steroid 17-alpha-hydrox 25.0 63 0.0022 29.0 4.2 49 38-95 17-69 (494)
270 2jrh_A Mitogen-activated prote 24.7 1.3E+02 0.0045 20.6 4.6 49 42-98 19-68 (94)
271 1y3j_A Copper-transporting ATP 24.4 1.1E+02 0.0037 19.0 4.3 55 37-97 6-64 (77)
272 1cpz_A Protein (COPZ); copper 24.4 1.2E+02 0.004 17.9 7.3 54 37-96 3-60 (68)
273 3u5c_Y RP50, 40S ribosomal pro 24.3 2.2E+02 0.0074 21.2 6.2 47 45-92 33-84 (135)
274 2okq_A Hypothetical protein YB 24.2 95 0.0032 23.3 4.2 61 37-97 29-110 (141)
275 2d9b_A Gtfii-I, general transc 23.9 1.4E+02 0.0048 21.2 4.8 51 15-65 31-89 (109)
276 3lo3_A Uncharacterized conserv 23.8 1.4E+02 0.0047 20.5 4.9 20 76-95 52-71 (94)
277 1kvi_A Copper-transporting ATP 23.3 1.4E+02 0.0048 18.5 6.9 56 36-97 10-69 (79)
278 1i4w_A Mitochondrial replicati 23.2 52 0.0018 28.9 3.1 23 36-58 143-165 (353)
279 2c60_A Human mitogen-activated 22.8 1.2E+02 0.0041 21.4 4.2 49 42-98 46-95 (111)
280 1osd_A MERP, hypothetical prot 22.6 1.3E+02 0.0045 18.0 6.6 55 37-97 6-64 (72)
281 2eje_A General transcription f 22.5 1.6E+02 0.0054 21.1 4.9 51 15-65 35-93 (114)
282 3cjk_B Copper-transporting ATP 22.3 1.4E+02 0.0048 18.2 6.1 55 37-97 5-63 (75)
283 3pm9_A Putative oxidoreductase 21.0 1.1E+02 0.0038 27.9 5.0 54 43-97 194-251 (476)
284 1yjr_A Copper-transporting ATP 20.3 1.5E+02 0.0052 17.8 7.4 56 35-96 5-64 (75)
285 2i9x_A Putative septation prot 20.2 1.3E+02 0.0045 20.5 4.0 26 61-86 5-30 (87)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.95 E-value=3.5e-27 Score=219.60 Aligned_cols=86 Identities=31% Similarity=0.505 Sum_probs=80.9
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.||+++|.++|.+||.|+.|.|+.+..+++++|||||+|.+.++|++||..|||+.|.|++|+|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 987644
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=151.28 Aligned_cols=83 Identities=29% Similarity=0.550 Sum_probs=79.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||+|||+++|+++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
|.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 865
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=149.83 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
++..+|||+|||+.+++++|.++|++||.|..|.|+.+..+++++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCccc
Q 022420 113 AKYKK 117 (297)
Q Consensus 113 ~~~~~ 117 (297)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 65543
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=143.68 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=76.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC-CceeCCeEeEEEec
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN-GAQILGRTIRVDHV 112 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~l~g~~i~V~~~ 112 (297)
+.+|||+|||+.+|+++|.++|++|| +|..|.|+.++.++.++|||||+|.+.++|++||+.|+ +..|.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred cCccc
Q 022420 113 AKYKK 117 (297)
Q Consensus 113 ~~~~~ 117 (297)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87554
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.3e-20 Score=135.01 Aligned_cols=82 Identities=24% Similarity=0.512 Sum_probs=77.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
+++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred cc
Q 022420 115 YK 116 (297)
Q Consensus 115 ~~ 116 (297)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=136.70 Aligned_cols=82 Identities=29% Similarity=0.550 Sum_probs=76.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
.+
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=140.99 Aligned_cols=87 Identities=25% Similarity=0.424 Sum_probs=81.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9876543
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=9.7e-21 Score=144.44 Aligned_cols=89 Identities=25% Similarity=0.435 Sum_probs=82.4
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
....++.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456778999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.+...
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999876543
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=1.9e-20 Score=142.79 Aligned_cols=89 Identities=28% Similarity=0.511 Sum_probs=82.8
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.+...
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999876544
No 10
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=143.17 Aligned_cols=96 Identities=27% Similarity=0.565 Sum_probs=86.5
Q ss_pred cCCCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 20 LGISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
+..+...+.+....+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 11 MAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp SSSSSCCSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred hccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 33444555556677889999999999999999999999999999999999988999999999999999999999999999
Q ss_pred ceeCCeEeEEEeccCc
Q 022420 100 AQILGRTIRVDHVAKY 115 (297)
Q Consensus 100 ~~l~g~~i~V~~~~~~ 115 (297)
..|.|+.|.|.++.+.
T Consensus 91 ~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 91 FELAGRPMKVGHVTER 106 (108)
T ss_dssp CCSSSSCCEEECSCSS
T ss_pred CEECCEEEEEEEcccC
Confidence 9999999999998653
No 11
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.3e-20 Score=151.48 Aligned_cols=87 Identities=31% Similarity=0.484 Sum_probs=81.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997644
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=138.26 Aligned_cols=85 Identities=35% Similarity=0.509 Sum_probs=80.0
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 98753
No 13
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2e-20 Score=138.04 Aligned_cols=86 Identities=31% Similarity=0.586 Sum_probs=81.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
|+++|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred Ccccch
Q 022420 114 KYKKKE 119 (297)
Q Consensus 114 ~~~~~~ 119 (297)
+.....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 766543
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.1e-20 Score=135.97 Aligned_cols=82 Identities=37% Similarity=0.607 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 022420 112 VA 113 (297)
Q Consensus 112 ~~ 113 (297)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=141.42 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=76.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCC--eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE--IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA----QILGR 105 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----~l~g~ 105 (297)
.....||||+|||+.+|+++|.++|++||. |..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456679999999999999999999999995 678999999999999999999999999999999999997 58999
Q ss_pred EeEEEeccC
Q 022420 106 TIRVDHVAK 114 (297)
Q Consensus 106 ~i~V~~~~~ 114 (297)
+|.|++|..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=141.61 Aligned_cols=88 Identities=27% Similarity=0.530 Sum_probs=82.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99876543
No 17
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=139.78 Aligned_cols=87 Identities=30% Similarity=0.462 Sum_probs=80.8
Q ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--------VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 27 ~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
.......+.++|||+|||+.+++++|.++|++||.|.. |.|+.+..++.++|||||+|.+.++|++||+.||
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 33455677899999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CceeCCeEeEEEecc
Q 022420 99 GAQILGRTIRVDHVA 113 (297)
Q Consensus 99 g~~l~g~~i~V~~~~ 113 (297)
|..|.|+.|+|.+|+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999873
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=138.17 Aligned_cols=84 Identities=33% Similarity=0.674 Sum_probs=79.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
.+..
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6644
No 19
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=141.69 Aligned_cols=87 Identities=30% Similarity=0.510 Sum_probs=81.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987643
No 20
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.4e-20 Score=139.87 Aligned_cols=88 Identities=23% Similarity=0.411 Sum_probs=81.1
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC---e
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG---R 105 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g---~ 105 (297)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3445678999999999999999999999999999999999987 79999999999999999999999999999998 9
Q ss_pred EeEEEeccCccc
Q 022420 106 TIRVDHVAKYKK 117 (297)
Q Consensus 106 ~i~V~~~~~~~~ 117 (297)
+|.|.++.+...
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999977554
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=139.15 Aligned_cols=86 Identities=26% Similarity=0.421 Sum_probs=81.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..||+..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 877554
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=137.08 Aligned_cols=84 Identities=32% Similarity=0.604 Sum_probs=79.2
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
...++.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=138.88 Aligned_cols=86 Identities=29% Similarity=0.569 Sum_probs=80.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44678999999999999999999999999999999999998899999999999999999999997 99999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9876543
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.5e-21 Score=142.14 Aligned_cols=88 Identities=28% Similarity=0.475 Sum_probs=82.0
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44567899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99876543
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=141.14 Aligned_cols=87 Identities=34% Similarity=0.567 Sum_probs=81.8
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9977554
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=137.86 Aligned_cols=85 Identities=27% Similarity=0.523 Sum_probs=80.0
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44677899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 987654
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=138.79 Aligned_cols=85 Identities=25% Similarity=0.488 Sum_probs=80.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.+.++|||+|||+.+++++|.++|.+||.|..| .|+.++.++.++|||||+|.+.++|++||+.||+..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876543
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2e-20 Score=141.52 Aligned_cols=87 Identities=31% Similarity=0.527 Sum_probs=81.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||..|||..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9987654
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=140.35 Aligned_cols=89 Identities=25% Similarity=0.491 Sum_probs=82.3
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeec-CCCCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRD-KGTGKPRGFAFVAYEDQRSTILAVDNL-NGAQILGRT 106 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~l~g~~ 106 (297)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|++||..| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345667899999999999999999999999999999999998 778999999999999999999999999 999999999
Q ss_pred eEEEeccCccc
Q 022420 107 IRVDHVAKYKK 117 (297)
Q Consensus 107 i~V~~~~~~~~ 117 (297)
|+|.++.+...
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999976543
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.1e-20 Score=146.52 Aligned_cols=88 Identities=30% Similarity=0.500 Sum_probs=81.8
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34556788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++.+..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99986544
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=140.70 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=82.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC------CceeC
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN------GAQIL 103 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~------g~~l~ 103 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445678899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeEeEEEeccCccc
Q 022420 104 GRTIRVDHVAKYKK 117 (297)
Q Consensus 104 g~~i~V~~~~~~~~ 117 (297)
|+.|.|.++.+...
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999876543
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=4e-20 Score=139.07 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=78.5
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=3.1e-20 Score=141.76 Aligned_cols=81 Identities=22% Similarity=0.460 Sum_probs=75.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
.++|||+|||+.+++++|.++|.+||.|..|.|+.+. +.++|||||+|.+.++|++||+.|++..|.|++|.|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999885 45799999999999999999999999999999999999876
Q ss_pred ccc
Q 022420 115 YKK 117 (297)
Q Consensus 115 ~~~ 117 (297)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 34
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=5.6e-20 Score=137.38 Aligned_cols=85 Identities=35% Similarity=0.567 Sum_probs=79.2
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+|| |..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3456788999999999999999999999997 999999999989999999999999999999999 99999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dng_A 88 DIAEGRK 94 (103)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9987644
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4.5e-21 Score=139.86 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=72.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
.+|||+|||+++++++|.++|++|| .|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999899999999999999999999999999999999999999987
Q ss_pred Cccc
Q 022420 114 KYKK 117 (297)
Q Consensus 114 ~~~~ 117 (297)
+..+
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6544
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=140.28 Aligned_cols=87 Identities=37% Similarity=0.638 Sum_probs=81.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9987644
No 37
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=138.14 Aligned_cols=85 Identities=19% Similarity=0.396 Sum_probs=79.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4457889999999999999999999999999999999987 88999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9876543
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.3e-20 Score=142.12 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=78.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+++++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.++
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=137.69 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCC---CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKG---TGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+.. ++.++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 5589999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 40
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=7e-20 Score=132.48 Aligned_cols=82 Identities=29% Similarity=0.575 Sum_probs=76.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++|| .+++..|.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999889999999999999999999999 56889999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 41
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.5e-20 Score=140.25 Aligned_cols=87 Identities=33% Similarity=0.526 Sum_probs=81.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--------EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--------DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
....+.++|||+|||+.+++++|+++|.+||.|. .|.|+.+..++.++|||||+|.+.++|++||+.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeEeEEEeccCcc
Q 022420 102 ILGRTIRVDHVAKYK 116 (297)
Q Consensus 102 l~g~~i~V~~~~~~~ 116 (297)
|.|+.|+|.++.+..
T Consensus 90 ~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGSKLKVSLARKKP 104 (113)
T ss_dssp ETTEECEEECSSCCC
T ss_pred cCCCEEEEEECCCCC
Confidence 999999999987644
No 42
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.1e-20 Score=137.43 Aligned_cols=85 Identities=26% Similarity=0.473 Sum_probs=78.8
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT-GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
...+.++|||+|||+.+++++|.++|.+|| |..|.|+.+..+ +.++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 999999999877 899999999999999999999 99999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99876543
No 43
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=133.99 Aligned_cols=83 Identities=20% Similarity=0.421 Sum_probs=77.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC-CceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK-PRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
..++|||+|||+++++++|.++|.+||.|..|.|+.+..++. ++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999998876665 8999999999999999999999999999999999998
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=135.82 Aligned_cols=86 Identities=23% Similarity=0.459 Sum_probs=78.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||..||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 4556789999999999999999999999999999999998853 36899999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99876543
No 45
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=2.7e-20 Score=139.78 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=81.0
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee---CCeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI---LGRT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l---~g~~ 106 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..| .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456789999999999999999999999999999999999988999999999999999999999999999998 8999
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|.|.++.+..
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999987644
No 46
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=7e-21 Score=141.66 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCC------CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 022420 33 KDSAYVYVGGIPF------DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG-R 105 (297)
Q Consensus 33 ~~~~~v~V~nL~~------~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g-~ 105 (297)
...++|||+|||+ .+++++|.++|++||.|..|.|+.+..|++++|||||+|.+.++|++||+.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999899999999999999999999999999999999 9
Q ss_pred EeEEEeccC
Q 022420 106 TIRVDHVAK 114 (297)
Q Consensus 106 ~i~V~~~~~ 114 (297)
+|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=134.93 Aligned_cols=83 Identities=30% Similarity=0.567 Sum_probs=77.4
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||+|..|.|+.+.. +.++|||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 445678999999999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred eccC
Q 022420 111 HVAK 114 (297)
Q Consensus 111 ~~~~ 114 (297)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8753
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=137.43 Aligned_cols=85 Identities=25% Similarity=0.444 Sum_probs=80.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE-EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV-DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT---- 106 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~---- 106 (297)
..+.++|||+|||+++++++|.++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987643
No 49
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=3e-20 Score=144.72 Aligned_cols=87 Identities=36% Similarity=0.516 Sum_probs=81.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|+++|.+||+|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987654
No 50
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=4.2e-20 Score=139.63 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCCCccccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 22 ISDDASWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 22 ~~~~~~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
+.+.........+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||..+ +..
T Consensus 12 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~ 90 (109)
T 2rs2_A 12 SGLVPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHE 90 (109)
T ss_dssp --------------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEE
T ss_pred CCCCccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCc
Confidence 3344444456678899999999999999999999999999999999999888999999999999999999999765 599
Q ss_pred eCCeEeEEEeccCccc
Q 022420 102 ILGRTIRVDHVAKYKK 117 (297)
Q Consensus 102 l~g~~i~V~~~~~~~~ 117 (297)
|.|+.|.|.++.+...
T Consensus 91 l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 91 LDSKTIDPKVAFPRRA 106 (109)
T ss_dssp ETTEEEEEEECCCCCC
T ss_pred CCCEEEEEEEccCCCC
Confidence 9999999999876543
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=134.36 Aligned_cols=86 Identities=28% Similarity=0.513 Sum_probs=78.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+.. .++|||||+|.+.++|++||..||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456789999999999999999999999999999999998753 38999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99876553
No 52
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.5e-20 Score=139.12 Aligned_cols=85 Identities=29% Similarity=0.481 Sum_probs=79.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 4456789999999999999999999999999999999999988999999999999999999999999998 899999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998654
No 53
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=7.6e-20 Score=146.98 Aligned_cols=83 Identities=23% Similarity=0.444 Sum_probs=78.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
+.++|||+|||+++++++|.++|.+|| .|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 87643
No 54
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=1.1e-19 Score=131.94 Aligned_cols=81 Identities=31% Similarity=0.589 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 999999999999999986
Q ss_pred Cc
Q 022420 114 KY 115 (297)
Q Consensus 114 ~~ 115 (297)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 55
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=8e-20 Score=148.37 Aligned_cols=87 Identities=31% Similarity=0.525 Sum_probs=80.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876544
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=140.32 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=78.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+++++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 86543
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=136.10 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=78.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred eccC
Q 022420 111 HVAK 114 (297)
Q Consensus 111 ~~~~ 114 (297)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=136.45 Aligned_cols=86 Identities=23% Similarity=0.423 Sum_probs=79.5
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345678899999999999999999999999999999999987 6899999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++....
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9986543
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=9.8e-20 Score=143.50 Aligned_cols=87 Identities=29% Similarity=0.428 Sum_probs=81.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||..+++++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9987644
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=3.9e-20 Score=136.07 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.++.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999888998888999999999999999999999999999999999999998
Q ss_pred cc
Q 022420 112 VA 113 (297)
Q Consensus 112 ~~ 113 (297)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=134.23 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=76.4
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
...+.++|||+|||+.+++++|+ ++|.+||.|..|.|+.+..+ +|||||+|.+.++|++||+.|||..|.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999988755 889999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|+|.++.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 62
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6e-20 Score=137.39 Aligned_cols=85 Identities=21% Similarity=0.360 Sum_probs=79.6
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhcc-CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce-eCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQ-CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ-ILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-l~g~~i~ 108 (297)
...+.++|||+|||+.+++++|.++|.+ ||.|..|.|+.+. ++.++|||||+|.+.++|++||+.||+.. |.|++|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4467889999999999999999999999 9999999999998 99999999999999999999999999999 9999999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++.+..
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99986544
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-20 Score=140.99 Aligned_cols=81 Identities=26% Similarity=0.503 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999988999999999999999999999 99999999999999998
Q ss_pred cC
Q 022420 113 AK 114 (297)
Q Consensus 113 ~~ 114 (297)
.+
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 64
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.7e-19 Score=145.21 Aligned_cols=87 Identities=30% Similarity=0.482 Sum_probs=81.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+..+
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9976543
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-20 Score=139.60 Aligned_cols=86 Identities=42% Similarity=0.782 Sum_probs=80.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCcccc
Q 022420 113 AKYKKK 118 (297)
Q Consensus 113 ~~~~~~ 118 (297)
.+....
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 876543
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=137.30 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+..+|||+|||+.+|+++|.++|++||+|..|.|+.+.. +.++|||||+|.+.++|++||. |++..|.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999986 9999999999999999999996 999999999999998
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 67
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=138.44 Aligned_cols=87 Identities=26% Similarity=0.445 Sum_probs=74.6
Q ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecC-CCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 27 SWHAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDK-GTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 27 ~~~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
.......+.++|||+|||+.+++++|.++|++|| |..|.|+.+. .+++++|||||+|.+.++|++|| .|||..|.|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3344567789999999999999999999999999 9999999987 58999999999999999999999 9999999999
Q ss_pred EeEEEeccCc
Q 022420 106 TIRVDHVAKY 115 (297)
Q Consensus 106 ~i~V~~~~~~ 115 (297)
.|.|.++.+.
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998654
No 68
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=136.50 Aligned_cols=80 Identities=15% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeEeEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN--GAQILGRTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~l~g~~i~V 109 (297)
.++.++|||+|||+.+++++|.++|++||.|+.|.|+.+ +|||||+|++.++|+.||+.|+ +..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 467899999999999999999999999999999999865 6999999999999999999886 47899999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99976554
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.9e-19 Score=134.18 Aligned_cols=84 Identities=30% Similarity=0.442 Sum_probs=76.2
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+. ++.++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456788999999999999999999999999999999965 3457999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9987644
No 70
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=135.98 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=72.9
Q ss_pred ccCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeE
Q 022420 30 AKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG--AQILGRT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~l~g~~ 106 (297)
....++++|||+|||+ .+++++|.++|.+||.|..|.|+.+ ++||||+|++.++|+.||+.||+ ..|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 4456889999999999 9999999999999999999999865 48999999999999999999886 4599999
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|.|.++...+
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999997644
No 71
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=133.11 Aligned_cols=80 Identities=26% Similarity=0.289 Sum_probs=72.6
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce--eCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ--ILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--l~g~~i~ 108 (297)
..+|+.+|||+|||+.+++++|.++|++||.|..|.|+.. +|||||+|++.++|.+||+.|++.. |.|++|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4568899999999999999999999999999999998853 6899999999999999999999875 7899999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|++++.+.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99987643
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=132.43 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=78.7
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
+....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||. ++..|.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445678899999999999999999999999999999999998899999999999999999999996 57899999999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++.+..
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99987644
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=130.31 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=77.7
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+..+|||+|||+.+++++|.++|.+| .|..|.|+.+ .++.++|||||+|.+.++|++||. ||+..|.|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345677899999999999999999999999 9999999998 689999999999999999999998 9999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987643
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-20 Score=139.68 Aligned_cols=84 Identities=24% Similarity=0.460 Sum_probs=78.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||.. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999966 99999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 87644
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=1.7e-19 Score=131.84 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=77.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457889999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87654
No 76
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-20 Score=136.75 Aligned_cols=86 Identities=27% Similarity=0.468 Sum_probs=80.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999999999999999999999999999999988999999999999999999999977 9999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9876543
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=131.70 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=73.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh--CCceeCCeEe
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL--NGAQILGRTI 107 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~l~g~~i 107 (297)
...+++++|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|++||+.| ++..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 44567899999999999999999999999999999988864 799999999999999999977 5678999999
Q ss_pred EEEeccCccc
Q 022420 108 RVDHVAKYKK 117 (297)
Q Consensus 108 ~V~~~~~~~~ 117 (297)
.|.++.....
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999976554
No 78
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=136.48 Aligned_cols=86 Identities=21% Similarity=0.356 Sum_probs=77.8
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHH---HHhccCCCeEEEEEeecCCCC---CCceEEEEEecCHHHHHHHHHHhCCceeCC
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLL---AVFAQCGEIVDVNLVRDKGTG---KPRGFAFVAYEDQRSTILAVDNLNGAQILG 104 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~---~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~l~g 104 (297)
...+..+|||+|||+.+++++|. ++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|||..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 45567899999999999999999 999999999999999887644 566999999999999999999999999999
Q ss_pred eEeEEEeccCcc
Q 022420 105 RTIRVDHVAKYK 116 (297)
Q Consensus 105 ~~i~V~~~~~~~ 116 (297)
++|+|.++.+..
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999986643
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-20 Score=133.46 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=76.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999988764
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=140.54 Aligned_cols=83 Identities=36% Similarity=0.604 Sum_probs=78.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+..+|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 81
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.8e-19 Score=128.61 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.-|||+||++.+|+++|.++|.+||+|..|+|+. ++|||||+|.+.++|.+|++.||+..|.|++|.|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 366799999999999999999999999999999875 4899999999999999999999999999999999998
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=134.81 Aligned_cols=84 Identities=19% Similarity=0.451 Sum_probs=77.9
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee-------
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI------- 102 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l------- 102 (297)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344677899999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred -CCeEeEEEeccC
Q 022420 103 -LGRTIRVDHVAK 114 (297)
Q Consensus 103 -~g~~i~V~~~~~ 114 (297)
.+++|.|.++.+
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 578899999875
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=4.5e-20 Score=142.58 Aligned_cols=83 Identities=33% Similarity=0.568 Sum_probs=78.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||..|.|+.|.|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999 89999999999999998
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
.+..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 84
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=133.71 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG-----RT 106 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g-----~~ 106 (297)
....++|||+|||+.+++++|+++|.+||.|+.|.|+.+ |||||+|.+.++|++||+.||+..|.| ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999865 899999999999999999999999999 99
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|.|.++.+..
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999987643
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=134.96 Aligned_cols=85 Identities=28% Similarity=0.536 Sum_probs=77.7
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.....+.++|||+|||..+++++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999875 35899999999999999999999999999999999
Q ss_pred EEeccCc
Q 022420 109 VDHVAKY 115 (297)
Q Consensus 109 V~~~~~~ 115 (297)
|.++.+.
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998653
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=137.25 Aligned_cols=86 Identities=22% Similarity=0.414 Sum_probs=80.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||..|||..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9876443
No 87
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=134.17 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 32 YKDSAYVYVGGIPFDL------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~------~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
....++|||+|||+.+ ++++|.++|++||.|..|.|+ ..++.++|||||+|.+.++|++||..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 789999999999999999988 35889999999999999999999999999999998
Q ss_pred -EeEEEeccCcc
Q 022420 106 -TIRVDHVAKYK 116 (297)
Q Consensus 106 -~i~V~~~~~~~ 116 (297)
+|.|.++....
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999986543
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=135.13 Aligned_cols=86 Identities=30% Similarity=0.464 Sum_probs=78.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEe-ecCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLV-RDKGTGKPRGFAFVAYEDQRSTILAVDNLN--GAQILGRTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~l~g~~i 107 (297)
..+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+..++.++|||||+|.+.++|++||+.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999998 787788999999999999999999999996 589999999
Q ss_pred EEEeccCccc
Q 022420 108 RVDHVAKYKK 117 (297)
Q Consensus 108 ~V~~~~~~~~ 117 (297)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976554
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=9.6e-20 Score=128.00 Aligned_cols=75 Identities=27% Similarity=0.476 Sum_probs=71.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+|||+|||+.+++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||+ |++..|.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999995 9999999999999875
No 90
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-20 Score=143.68 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=79.3
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA----QILG 104 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----~l~g 104 (297)
...+..+|||+|||+++++++|.++|.+||.|.. |.|+.++.++.++|||||+|.+. +|.+||..|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3467789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred eEeEEEeccCcc
Q 022420 105 RTIRVDHVAKYK 116 (297)
Q Consensus 105 ~~i~V~~~~~~~ 116 (297)
+.|.|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999987643
No 91
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=135.98 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=73.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC--ceeCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG--AQILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~l~g~~i~ 108 (297)
..+++++|||+|||+.+++++|+++|++||.|+.|.|+.+ +|||||+|++.++|++||+.|++ ..|.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4567899999999999999999999999999999999875 69999999999999999998874 689999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.....
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999976554
No 92
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=136.53 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=76.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCe-EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEI-VDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
...+..+|||+|||+.+++++|.++|..||.| ..|.|+.+. ++.++|||||+|.+.++|++||+. |+..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999998 999999999999999999999955 999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++.+.
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998653
No 93
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=132.15 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=71.8
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc--eeCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA--QILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~--~l~g~~i~ 108 (297)
..+|..+|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++. .|.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999988753 689999999999999999988754 59999999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++....
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99987644
No 94
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=132.17 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=76.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE-EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD-VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
+...+.++|||+|||+.+++++|.++|.+||.|.. |.|+.+ .++.++|||||+|.+.++|++||+. ++..|.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34467789999999999999999999999999987 888888 6899999999999999999999965 99999999999
Q ss_pred EEeccCc
Q 022420 109 VDHVAKY 115 (297)
Q Consensus 109 V~~~~~~ 115 (297)
|.++...
T Consensus 88 v~~~~~~ 94 (104)
T 1wg5_A 88 IFKSSRA 94 (104)
T ss_dssp EEEECTT
T ss_pred EEECCHH
Confidence 9987653
No 95
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.2e-18 Score=128.71 Aligned_cols=83 Identities=16% Similarity=0.425 Sum_probs=71.5
Q ss_pred CccccccCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 25 DASWHAKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 25 ~~~~~~~~~~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
+.......++.++|||+|||+ .+++++|.++|++||.|..|.|. +|||||+|.+.++|++||..|||..|.
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 12 SGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334445667889999999998 99999999999999999999884 689999999999999999999999999
Q ss_pred CeEeEEEeccCc
Q 022420 104 GRTIRVDHVAKY 115 (297)
Q Consensus 104 g~~i~V~~~~~~ 115 (297)
|+.|+|.++...
T Consensus 84 g~~l~V~~a~~~ 95 (97)
T 2xnq_A 84 GKKLILEVSSSN 95 (97)
T ss_dssp TEECEEEECCCC
T ss_pred CEEEEEEecCCC
Confidence 999999998653
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=130.00 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=74.2
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||..||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678999999999999999999999999987 45655 578999999999999999999999999999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 987654
No 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=132.64 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=74.5
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|+++|.+||. +.|.|+.+. +++++|||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 4456789999999999999999999999995 499999997 8999999999999999999999 689999999999998
Q ss_pred eccC
Q 022420 111 HVAK 114 (297)
Q Consensus 111 ~~~~ 114 (297)
++.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8754
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=1e-19 Score=142.86 Aligned_cols=88 Identities=30% Similarity=0.477 Sum_probs=81.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
+...+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+..+
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99976554
No 99
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-19 Score=140.09 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=76.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|..||.|..|.++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999886666666799999999999999999999997 99999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++....
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986533
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=135.10 Aligned_cols=83 Identities=20% Similarity=0.347 Sum_probs=76.5
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
+...+.++|||+|||+++++++|.++|..||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 33456789999999999999999999999999 89999999875 9999999999999999999996 9999999999
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
|.|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99998854
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=127.45 Aligned_cols=76 Identities=26% Similarity=0.464 Sum_probs=72.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
++|||+|||+.+++++|.++|++||+|..|.|+.++.++.++|||||+|.+.++|++||..|+ ..|.|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999999 9999999999886
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=137.02 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=75.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
+...+.++|||+|||+.+++++|+ ++|++||.|..|.|.. ++.++|||||+|.+.++|+.||..|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345678899999999999999876 6999999999987753 678899999999999999999999999999999
Q ss_pred EeEEEeccCcc
Q 022420 106 TIRVDHVAKYK 116 (297)
Q Consensus 106 ~i~V~~~~~~~ 116 (297)
+|+|.++....
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999997654
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=129.89 Aligned_cols=81 Identities=23% Similarity=0.506 Sum_probs=74.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 44567889999999999999999999999999999998854 689999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9987644
No 104
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.1e-19 Score=133.75 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=72.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
...+..++|||+|||+.+++++|+++|.+|| +|..|.|+.. .++|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999999999 8999988632 4689999999999999999999999999999999
Q ss_pred EEeccCc
Q 022420 109 VDHVAKY 115 (297)
Q Consensus 109 V~~~~~~ 115 (297)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998653
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=7.9e-20 Score=133.07 Aligned_cols=81 Identities=32% Similarity=0.632 Sum_probs=74.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.+ |++|+..|||..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998765
Q ss_pred cc
Q 022420 116 KK 117 (297)
Q Consensus 116 ~~ 117 (297)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=129.34 Aligned_cols=84 Identities=25% Similarity=0.427 Sum_probs=76.0
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|+++|..|+ .|.|+.+..++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456789999999999999999999999874 5778888788999999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9987644
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=126.95 Aligned_cols=78 Identities=23% Similarity=0.493 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4578899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.+...
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876543
No 108
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.4e-19 Score=152.12 Aligned_cols=83 Identities=23% Similarity=0.415 Sum_probs=77.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC--CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCG--EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..++|||+|||++|++++|+++|.+|| .|+.|.|+.++.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 86543
No 109
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.5e-19 Score=129.48 Aligned_cols=80 Identities=24% Similarity=0.406 Sum_probs=73.4
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC--CeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL--GRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~--g~~i~ 108 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||+.||+..|. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3467789999999999999999999999999999998854 689999999999999999999999999 99999
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++.+..
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987643
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.1e-18 Score=131.66 Aligned_cols=81 Identities=23% Similarity=0.463 Sum_probs=72.7
Q ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 29 HAKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
.....+.++|||+|||+.+++++|.++|.+||.|..|.|+ +|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456678999999999999999999999999999999988 68999999999999999999999999999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999876543
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=129.25 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=73.4
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
......++|||+|||+.+++++|+++|.+||.|. +.|+.+ .++|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999997 666643 56899999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9987654
No 112
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=124.48 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=71.7
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL-NGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~l~g~~i~ 108 (297)
+...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||..| ++..|.|++|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34567789999999999999999999999999999999864 689999999999999999989 99999999999
Q ss_pred EEecc
Q 022420 109 VDHVA 113 (297)
Q Consensus 109 V~~~~ 113 (297)
|.++.
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=126.56 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=72.1
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccC--CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQC--GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
....+.++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|++||..||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 445678999999999999999999999999 999998875 5799999999999999999999999999999
Q ss_pred EEEeccCcc
Q 022420 108 RVDHVAKYK 116 (297)
Q Consensus 108 ~V~~~~~~~ 116 (297)
+|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987644
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=127.82 Aligned_cols=73 Identities=23% Similarity=0.415 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe-Ee
Q 022420 35 SAYVYVGGIPFDL------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR-TI 107 (297)
Q Consensus 35 ~~~v~V~nL~~~~------~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~-~i 107 (297)
+++|||+|||+.+ ++++|.++|++||.|..|.|+ ..++.++|||||+|.+.++|++||+.|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999988 35889999999999999999999999999999999 88
Q ss_pred EE
Q 022420 108 RV 109 (297)
Q Consensus 108 ~V 109 (297)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-19 Score=136.91 Aligned_cols=86 Identities=22% Similarity=0.355 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.+..+..++.++|||||+|.+.++|++||+.||+..|.|++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45779999999999999999999999999984332222222788899999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.+...
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 876543
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=9.7e-20 Score=135.57 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=75.5
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+..+|||+|||+++++++|.++|.+||.|.. .++.+..++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999887 566666678999999999999999999997 99999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987644
No 117
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.5e-18 Score=131.20 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=72.5
Q ss_pred cccCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 29 HAKYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 29 ~~~~~~~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
.....+.++|||+|||+. +++++|+++|.+||.|..|.| ++|||||+|.+.++|++||+.||+..|.|+.|
T Consensus 21 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 21 NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 344556789999999999 999999999999999999988 37899999999999999999999999999999
Q ss_pred EEEeccCcc
Q 022420 108 RVDHVAKYK 116 (297)
Q Consensus 108 ~V~~~~~~~ 116 (297)
+|.++...+
T Consensus 93 ~V~~a~~~~ 101 (110)
T 1wf1_A 93 DINMAGEPK 101 (110)
T ss_dssp CEEESCCCC
T ss_pred EEEECCCCC
Confidence 999987543
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=5.8e-19 Score=138.34 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=76.8
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
+...+.++|||+|||+.+|+++|.++|++||. |..|.|+.+.. ++++|||||+|.+.++|++||+ ||+..|.|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34567789999999999999999999999999 89999999986 9999999999999999999997 9999999999
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
|.|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998754
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=1.9e-18 Score=129.03 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|++|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999887 45999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.+...
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 876543
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.77 E-value=7e-19 Score=129.79 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=75.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
..++.++|||+|||+.+++++|. ++|.+||.|..|.|+. ++.++|||||+|.+.++|+.|++.|||..|.|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 35678999999999999999999 9999999999998873 5677899999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 022420 107 IRVDHVAKYKK 117 (297)
Q Consensus 107 i~V~~~~~~~~ 117 (297)
|.|.++.+...
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987553
No 121
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=125.24 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=72.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|++||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3456789999999999999999999999999999999873 49999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987644
No 122
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=2.7e-18 Score=145.04 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=78.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..|.+||||+|||+++++++|.++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+.|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86543
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=129.75 Aligned_cols=81 Identities=23% Similarity=0.469 Sum_probs=74.7
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ +|||||+|.+.++|++||..|+|..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567889999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred eccCccc
Q 022420 111 HVAKYKK 117 (297)
Q Consensus 111 ~~~~~~~ 117 (297)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9876543
No 124
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=130.78 Aligned_cols=78 Identities=27% Similarity=0.470 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+..+|||+|||+.+++++|+++|+.| .|..|.|+.+. ++.++|||||+|.+.++|++|| .||+..|.|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 89999999987 4999999999999999999999 899999999999998774
Q ss_pred C
Q 022420 114 K 114 (297)
Q Consensus 114 ~ 114 (297)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 125
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=142.77 Aligned_cols=85 Identities=22% Similarity=0.423 Sum_probs=79.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|+++|.+||.|+.|.|+.+. ++.++|||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022420 112 VAKYKK 117 (297)
Q Consensus 112 ~~~~~~ 117 (297)
+.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 876543
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-19 Score=129.04 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=73.5
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|.+||.|..| ..++.++|||||+|.+.++|++||+.|+|..|.|++|.|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 445678899999999999999999999999988766 237788999999999999999999999999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9986644
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.8e-18 Score=135.97 Aligned_cols=84 Identities=24% Similarity=0.500 Sum_probs=79.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+..+|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|++|.|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
.+|.
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9985
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9e-19 Score=132.21 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=72.1
Q ss_pred cCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC--CceeCCeEe
Q 022420 31 KYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN--GAQILGRTI 107 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~l~g~~i 107 (297)
...++++|||+|||+. +++++|.++|.+||.|..|.|+.. +|||||+|.+.++|+.||+.|+ +..|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4567899999999998 999999999999999999998743 7999999999999999999886 456999999
Q ss_pred EEEeccCccc
Q 022420 108 RVDHVAKYKK 117 (297)
Q Consensus 108 ~V~~~~~~~~ 117 (297)
.|.++.....
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976443
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=1.8e-18 Score=131.70 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+ +.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999865 45589999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98644
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=124.67 Aligned_cols=78 Identities=24% Similarity=0.492 Sum_probs=72.0
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+. +||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456788999999999999999999999999999999983 489999999999999999999999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987654
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-20 Score=141.06 Aligned_cols=85 Identities=29% Similarity=0.461 Sum_probs=79.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEE--------EEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVD--------VNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
..+.++|||+|||+.+++++|.++|.+||.|.. |.|+.+..++.++|||||+|.+.++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457889999999999999999999999999998 899998888999999999999999999999999999999
Q ss_pred CeEeEEEeccCcc
Q 022420 104 GRTIRVDHVAKYK 116 (297)
Q Consensus 104 g~~i~V~~~~~~~ 116 (297)
|++|.|.++.+..
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999986543
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.9e-19 Score=124.81 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=71.1
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
+|||+|||+.+++++|.++|++||+|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998889999999999999999999995 6999999999999864
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.4e-18 Score=127.99 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||+|||..+++++|.++|.+||.|..|.|+. ++|||||+|.+.++|++||..|||..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 34578999999999999999999999999999999883 479999999999999999999999999999999998
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-19 Score=133.34 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=76.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCC---eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGE---IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
....+.++|||+|||+.+++++|.++|..||. |..|.|+.+.. +.++|||||+|.+.++|++||. ||+..|.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567889999999999999999999999998 89999999886 9999999999999999999997 9999999999
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
|.|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998764
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=6e-19 Score=139.70 Aligned_cols=85 Identities=20% Similarity=0.389 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE--------EEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV--------NLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
..+.++|||+|||+.+++++|.++|.+||.|..| .+. .++.++|||||+|.+.++|++||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 5678999999999999999999999999998764 222 36889999999999999999999999999999
Q ss_pred CeEeEEEeccCcccch
Q 022420 104 GRTIRVDHVAKYKKKE 119 (297)
Q Consensus 104 g~~i~V~~~~~~~~~~ 119 (297)
|++|.|.++.+.....
T Consensus 119 g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 119 GKPMVVQFARSARPKQ 134 (143)
T ss_dssp TEECEEEECCCSCC--
T ss_pred CcEEEEEECCCCCCcc
Confidence 9999999997765443
No 136
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.1e-18 Score=127.16 Aligned_cols=79 Identities=16% Similarity=0.490 Sum_probs=71.1
Q ss_pred cCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
..++.++|||+|||+ .+++++|.++|.+||.|..|.|. +|||||+|.+.++|++||+.||+..|.|++|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999885 689999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876443
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=130.95 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
....++|||+|||+.+++++|.++|.+||.|..|.|+. +++||||+|.+.++|++||+.|||..|.|++|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 33567999999999999999999999999999998874 468999999999999999999999999999999999
Q ss_pred ccCc
Q 022420 112 VAKY 115 (297)
Q Consensus 112 ~~~~ 115 (297)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8753
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=128.82 Aligned_cols=76 Identities=36% Similarity=0.570 Sum_probs=71.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
++|||+|||+.+++++|.++|++||+|..|.|+.+ ++|||||+|.+.++|++||+.||+..|.|+.|.|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5899999999999999999999999999999999998764
Q ss_pred c
Q 022420 116 K 116 (297)
Q Consensus 116 ~ 116 (297)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=121.67 Aligned_cols=80 Identities=33% Similarity=0.460 Sum_probs=71.8
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|| .+++++|.++|.+||.|..|.|. .++|||||+|.+.++|++||..||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567889999996 89999999999999999999885 35799999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99876543
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2e-18 Score=128.67 Aligned_cols=81 Identities=22% Similarity=0.516 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+. ++.++|||||+|.+.++|++||. ++..|.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 99999999999999999999996 999999999999998
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
.+..
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 6543
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=124.80 Aligned_cols=81 Identities=23% Similarity=0.269 Sum_probs=72.9
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.....++|||+|||+.+++++|.++|.+||.|..| .|+.+..+ +.|||+|.+.++|++||..|||..|.|++|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999 58877544 44999999999999999999999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999775
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=1.5e-17 Score=134.96 Aligned_cols=80 Identities=29% Similarity=0.536 Sum_probs=76.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+..+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.|||..|.|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999987
No 143
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7.5e-18 Score=128.24 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=74.1
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHH----HHHHHH--HhCCce
Q 022420 36 AYVYVGGI----PFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRS----TILAVD--NLNGAQ 101 (297)
Q Consensus 36 ~~v~V~nL----~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----a~~A~~--~l~g~~ 101 (297)
+.|||+|| |+.|++.+|+++|+.||+|..|.++.|+.||.++|||||+|.+ ++. |.+||. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 888988 789999
Q ss_pred eCCeEeEEEeccCccc
Q 022420 102 ILGRTIRVDHVAKYKK 117 (297)
Q Consensus 102 l~g~~i~V~~~~~~~~ 117 (297)
|.|++|+|.+-.....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999998776554
No 144
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=122.52 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=69.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.....+|||+|||+++++++|.++|.+||.|..| +.+..++. ||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55544554 99999999999999998 999999999999998
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76543
No 145
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=124.56 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCC-eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC-ceeCCeEeEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGE-IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG-AQILGRTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~l~g~~i~V 109 (297)
..+.++|||+|||+++++++|+++|.+||. |..+.|. ++|||||+|.+.++|++||+.||| ..|.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 356789999999999999999999999999 6666553 368999999999999999999999 9999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
.++.+..
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9987644
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=7.8e-18 Score=134.33 Aligned_cols=81 Identities=31% Similarity=0.473 Sum_probs=74.8
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.+ ++|||||+|.+.++|+.||..|||..|.|++|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567789999999999999999999999999999999876 4899999999999999999999999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++.+.
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998764
No 147
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=3.4e-18 Score=130.37 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=65.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE-----e
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT-----I 107 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~-----i 107 (297)
...++|||+|||+++++++|+++|.+||+|+.|.|+.+ |||||+|.+.++|++||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999864 89999999999999999999999999998 5
Q ss_pred EEEecc
Q 022420 108 RVDHVA 113 (297)
Q Consensus 108 ~V~~~~ 113 (297)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 665543
No 148
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=8.8e-19 Score=137.75 Aligned_cols=84 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+|+++|+++|++|| |+.|.|+.++. ++++|||||+|.+.++|++|| .||+..|.|+.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 77999999975 999999999999999999999 89999999999999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
..+.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876543
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2.5e-17 Score=138.59 Aligned_cols=85 Identities=31% Similarity=0.510 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+..+|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 202 a~~~~ 206 (216)
T 2qfj_A 202 AVTPP 206 (216)
T ss_dssp CSSCS
T ss_pred ecCCC
Confidence 87654
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=4.5e-18 Score=131.28 Aligned_cols=81 Identities=28% Similarity=0.414 Sum_probs=73.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeE--EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIV--DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
...+..+|||+|||+.+++++|+++|++| .|+ .|.|+.+.. |.++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 44567899999999999999999999999 677 899999885 9999999999999999999995 688999999999
Q ss_pred EEeccC
Q 022420 109 VDHVAK 114 (297)
Q Consensus 109 V~~~~~ 114 (297)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.73 E-value=2.6e-17 Score=132.67 Aligned_cols=83 Identities=31% Similarity=0.528 Sum_probs=78.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.++|||+|||+.+++++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|++||+.|+|..|.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
No 152
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=131.99 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCe----EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEI----VDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
..+..+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +++++|||||+|.+.++|++||+ +|+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Confidence 3567899999999999999999999999975 689999884 89999999999999999999996 59999999999
Q ss_pred EEEeccC
Q 022420 108 RVDHVAK 114 (297)
Q Consensus 108 ~V~~~~~ 114 (297)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=6.2e-18 Score=140.23 Aligned_cols=85 Identities=25% Similarity=0.482 Sum_probs=77.6
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+++++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+ +++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34567899999999999999999999999999999999998899999999999999999999995 59999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 986543
No 154
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=127.18 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=70.6
Q ss_pred cCCCCcEEEE--eCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee-----C
Q 022420 31 KYKDSAYVYV--GGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI-----L 103 (297)
Q Consensus 31 ~~~~~~~v~V--~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l-----~ 103 (297)
...|+.+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|||.+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 779999999999999999999999987642 68999999999999999999999998 6
Q ss_pred CeEeEEEeccCc
Q 022420 104 GRTIRVDHVAKY 115 (297)
Q Consensus 104 g~~i~V~~~~~~ 115 (297)
|.+|.|.++...
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 899999998643
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.3e-17 Score=120.76 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
..++|||+|||+.+++++|+++|.+| .|..|.|. .++|||||+|.+.++|++||+.|||..|.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999885 458999999999999999999999999999999999986
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.2e-17 Score=141.06 Aligned_cols=81 Identities=20% Similarity=0.430 Sum_probs=75.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
....+|||+|||+.+++++|.++|.+||.|..|.|+.+. +.++|||||+|.+.++|++||+.|||..|.|++|.|.++
T Consensus 101 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 356799999999999999999999999999999999874 457999999999999999999999999999999999998
Q ss_pred cCc
Q 022420 113 AKY 115 (297)
Q Consensus 113 ~~~ 115 (297)
.+.
T Consensus 179 ~~~ 181 (213)
T 4f02_A 179 KSR 181 (213)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.2e-17 Score=133.45 Aligned_cols=83 Identities=27% Similarity=0.448 Sum_probs=78.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred Ccc
Q 022420 114 KYK 116 (297)
Q Consensus 114 ~~~ 116 (297)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 158
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=119.96 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=66.7
Q ss_pred CCCCcE-EEEeCCCCCCCHHH----HHHHhccC-CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 32 YKDSAY-VYVGGIPFDLTEGD----LLAVFAQC-GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 32 ~~~~~~-v~V~nL~~~~~~~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
.+|+.| |||+|||+.+++++ |.++|++| |+|..| ++ |||||+|.+.++|+.|++.|||..|.|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 456666 99999999999988 55899999 599998 33 9999999999999999999999999999
Q ss_pred EeEEEeccCcc
Q 022420 106 TIRVDHVAKYK 116 (297)
Q Consensus 106 ~i~V~~~~~~~ 116 (297)
+|+|.+|+...
T Consensus 75 ~i~v~~A~~~s 85 (96)
T 2diu_A 75 RIIVSFTPKNR 85 (96)
T ss_dssp CCEEESSCCSC
T ss_pred eEEEEecCCCc
Confidence 99999997644
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=5.9e-17 Score=130.89 Aligned_cols=81 Identities=33% Similarity=0.560 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eEeEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG--RTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g--~~i~V 109 (297)
..+..+|||+|||..+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+..|||..|.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999999999999988 99999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.+|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=4.3e-17 Score=118.41 Aligned_cols=78 Identities=29% Similarity=0.487 Sum_probs=62.7
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce--eCCeEe
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ--ILGRTI 107 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--l~g~~i 107 (297)
...++.++|||+|||+++++++|.++|++||.|..|.|+.+ ++|||||+|.+.++|++ |++.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34567899999999999999999999999999999999874 58999999999999883 45544 569999
Q ss_pred EEEeccCcc
Q 022420 108 RVDHVAKYK 116 (297)
Q Consensus 108 ~V~~~~~~~ 116 (297)
.|.++.+..
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999987644
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=7.8e-17 Score=124.44 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHHhCCceeCC--eEeEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGF-AFVAYEDQRSTILAVDNLNGAQILG--RTIRV 109 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~l~g--~~i~V 109 (297)
.+-..|||+||++.+|+++|.++|++||.|..|.|+... +|| |||+|.+.++|+.|++.|||..|.| ..|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344578899999999999999999999999999887642 688 9999999999999999999999988 89999
Q ss_pred EeccCcc
Q 022420 110 DHVAKYK 116 (297)
Q Consensus 110 ~~~~~~~ 116 (297)
+++.+..
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9987643
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=3.7e-17 Score=130.97 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC--eEeEEEe
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG--RTIRVDH 111 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g--~~i~V~~ 111 (297)
...+|||+||++.+++++|.++|++||.|+.|.|+... ++|||||+|.+.++|+.|++.|||..|.| +.|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34578999999999999999999999999999987432 47899999999999999999999999965 9999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 87643
No 163
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=9e-17 Score=133.39 Aligned_cols=85 Identities=28% Similarity=0.504 Sum_probs=80.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCccc
Q 022420 113 AKYKK 117 (297)
Q Consensus 113 ~~~~~ 117 (297)
.+..+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=124.53 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCC---CCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGT---GKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
..+.++|||+|||+.+++++|.++|++||.|. +.++.+..+ +.++|||||+|.+.++|++||+.|+ .|+|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 888887766 7999999999999999999999884 47888887
Q ss_pred EEeccC
Q 022420 109 VDHVAK 114 (297)
Q Consensus 109 V~~~~~ 114 (297)
|..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765543
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=6e-17 Score=131.61 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC---CeEeEE
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL---GRTIRV 109 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~---g~~i~V 109 (297)
.+..+|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||+.|||..|. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 367899999999999999999999999999999999986 6899999999999999999999999998876 499999
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.+|
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 987
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=1.1e-17 Score=135.06 Aligned_cols=82 Identities=28% Similarity=0.495 Sum_probs=77.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+..+|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||+ |++..|.|++|.|.++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 356799999999999999999999999999999999998899999999999999999999996 9999999999999998
Q ss_pred cCc
Q 022420 113 AKY 115 (297)
Q Consensus 113 ~~~ 115 (297)
.+.
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=1.4e-16 Score=132.05 Aligned_cols=84 Identities=31% Similarity=0.483 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988999999999999999999999965 899999999999998
Q ss_pred cCccc
Q 022420 113 AKYKK 117 (297)
Q Consensus 113 ~~~~~ 117 (297)
.+...
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 76554
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1e-16 Score=129.18 Aligned_cols=81 Identities=31% Similarity=0.537 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE--eEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT--IRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~--i~V 109 (297)
..+..+|||+|||..+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..|.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345789999999999999999999999999999999999888999999999999999999999999999999964 888
Q ss_pred Eec
Q 022420 110 DHV 112 (297)
Q Consensus 110 ~~~ 112 (297)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=6.4e-17 Score=124.34 Aligned_cols=80 Identities=33% Similarity=0.460 Sum_probs=71.6
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|| ++++++|.++|++||.|..|.|+ .++|||||+|.+.++|++||+.|||..|.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999996 69999999999999999999886 35799999999999999999999999999999999
Q ss_pred EeccCccc
Q 022420 110 DHVAKYKK 117 (297)
Q Consensus 110 ~~~~~~~~ 117 (297)
.++.+...
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99977544
No 170
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=2.3e-16 Score=117.99 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCCC-CCCceEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 32 YKDSAYVYVGGIPF-----DLTEGDLLAVFAQCGEIVDVNLVRDKGT-GKPRGFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 32 ~~~~~~v~V~nL~~-----~~~~~~L~~~F~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
..++.+|+|.||.. ..++++|+++|++||.|..|.|+.++.+ +.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35788999999973 2378999999999999999999987643 68899999999999999999999999999999
Q ss_pred EeEEEeccC
Q 022420 106 TIRVDHVAK 114 (297)
Q Consensus 106 ~i~V~~~~~ 114 (297)
+|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.69 E-value=1.1e-16 Score=134.46 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 33 KDSAYVYVGGIP-FDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~-~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.++++|||+||| +.+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|+.||+.|||..|.|++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 799999999999999999999998653 79999999999999999999999999999999999
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.1e-16 Score=121.43 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=68.3
Q ss_pred CCCc--EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceE-EEEEecCHHHHHHHHHHhCCceeCC--eEe
Q 022420 33 KDSA--YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGF-AFVAYEDQRSTILAVDNLNGAQILG--RTI 107 (297)
Q Consensus 33 ~~~~--~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~l~g--~~i 107 (297)
+++. .|||+||++.+++++|.++|++||.|+.|.|+.. .|| |||+|.+.++|+.|++.|||..|.| ..|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 3444 4679999999999999999999999999998652 286 9999999999999999999999987 689
Q ss_pred EEEeccCcc
Q 022420 108 RVDHVAKYK 116 (297)
Q Consensus 108 ~V~~~~~~~ 116 (297)
+|.+|.+..
T Consensus 95 ~V~~Ak~~~ 103 (124)
T 2e5i_A 95 KIEYARPTR 103 (124)
T ss_dssp EEECCSCSC
T ss_pred EEEEecCCc
Confidence 999987644
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=8.3e-17 Score=116.07 Aligned_cols=72 Identities=26% Similarity=0.609 Sum_probs=67.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
.+.++|||+|||+.+++++|.++|.+| | .|..|.|+.+ +|||||+|.+.++|++|| .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 699999999999999999 999999
Q ss_pred eCCeEeEEEe
Q 022420 102 ILGRTIRVDH 111 (297)
Q Consensus 102 l~g~~i~V~~ 111 (297)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=2e-16 Score=133.04 Aligned_cols=87 Identities=32% Similarity=0.507 Sum_probs=77.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+.|++..|.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ccCcccc
Q 022420 112 VAKYKKK 118 (297)
Q Consensus 112 ~~~~~~~ 118 (297)
+......
T Consensus 105 ~~~~~~~ 111 (216)
T 2qfj_A 105 PSNIGQA 111 (216)
T ss_dssp CSCCGGG
T ss_pred CCCcccc
Confidence 8765543
No 175
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=127.64 Aligned_cols=80 Identities=28% Similarity=0.482 Sum_probs=74.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKY 115 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~ 115 (297)
.+|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 489999999999999999999999999999999886 5789999999999999999999999999999999999998654
Q ss_pred c
Q 022420 116 K 116 (297)
Q Consensus 116 ~ 116 (297)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=7.2e-16 Score=135.46 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=81.9
Q ss_pred ccCCCCcEEEEeCCCCCC-CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDL-TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~-~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
....+..+|||+|||+.+ ++++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|||..|.|++|.
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 345678899999999995 999999999999999999999886 789999999999999999999999999999999999
Q ss_pred EEeccCcccchh
Q 022420 109 VDHVAKYKKKEE 120 (297)
Q Consensus 109 V~~~~~~~~~~~ 120 (297)
|.++.+......
T Consensus 258 v~~a~~~~~~~~ 269 (284)
T 3smz_A 258 VSFCAPGPPGRS 269 (284)
T ss_dssp EEECCSSSCHHH
T ss_pred EEEecCCCcccc
Confidence 999987766443
No 177
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=1.2e-15 Score=126.81 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=72.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
.++|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|++||..+ +..|.|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999886 5889999999999999999999655 5699999999998765
Q ss_pred c
Q 022420 115 Y 115 (297)
Q Consensus 115 ~ 115 (297)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.8e-17 Score=116.36 Aligned_cols=77 Identities=27% Similarity=0.439 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
.+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|..|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999998865 58999999999999976542 134568999999988
Q ss_pred cCcc
Q 022420 113 AKYK 116 (297)
Q Consensus 113 ~~~~ 116 (297)
.+..
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.66 E-value=3.6e-16 Score=126.98 Aligned_cols=83 Identities=25% Similarity=0.540 Sum_probs=75.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCC--CCceEEEEEecCHHHHHHHHHHhCCceeC---CeEeE
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTG--KPRGFAFVAYEDQRSTILAVDNLNGAQIL---GRTIR 108 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~l~---g~~i~ 108 (297)
+.++|||+|||+.+++++|.++|.+||+|..|.|+.+..++ .++|||||+|.+.++|++||+.|++..+. +.+|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999998876 67788
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88766443
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.7e-16 Score=127.22 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
..+..+|||+|||+.+++++|.++|++||.|..| ..++.++|||||+|.+.++|.+||..|||..|.|++|.|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3467899999999999999999999999988766 45788999999999999999999999999999999999999
Q ss_pred ccC
Q 022420 112 VAK 114 (297)
Q Consensus 112 ~~~ 114 (297)
+.+
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.3e-16 Score=126.39 Aligned_cols=79 Identities=28% Similarity=0.580 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEecc
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVA 113 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~ 113 (297)
++++|||+|||+.+++++|.++|++||.|..|.|+.+..++.++|||||+|.+.++|++||+. +..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999988999999999999999999999964 678999999998876
Q ss_pred C
Q 022420 114 K 114 (297)
Q Consensus 114 ~ 114 (297)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.9e-15 Score=132.74 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=80.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDH 111 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~ 111 (297)
.++..+|||+|||+.+++++|.++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..|+|..|.|++|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022420 112 VAKYK 116 (297)
Q Consensus 112 ~~~~~ 116 (297)
+.+..
T Consensus 172 a~~~~ 176 (284)
T 3smz_A 172 TDAGQ 176 (284)
T ss_dssp CCGGG
T ss_pred CCCCC
Confidence 87654
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1.2e-15 Score=133.85 Aligned_cols=83 Identities=23% Similarity=0.439 Sum_probs=76.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHH----HHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLL----AVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRT 106 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~ 106 (297)
...+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. +++++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999966 8999999999998885 6788999999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 022420 107 IRVDHVAKYK 116 (297)
Q Consensus 107 i~V~~~~~~~ 116 (297)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986544
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=4.1e-16 Score=132.91 Aligned_cols=80 Identities=24% Similarity=0.371 Sum_probs=71.4
Q ss_pred cCCCCcEEEEeCCCCCC---------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 31 KYKDSAYVYVGGIPFDL---------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~---------~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
...+.++|||+||+..+ ++++|.++|++||+|..|.|+.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678899999999998 79999999999999999999864 7999999999999999999999999
Q ss_pred e------------CCeEeEEEeccCcc
Q 022420 102 I------------LGRTIRVDHVAKYK 116 (297)
Q Consensus 102 l------------~g~~i~V~~~~~~~ 116 (297)
| .|+.|.|.||....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999997544
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=9.3e-16 Score=135.26 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCC-CCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 32 YKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKG-TGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
..+..+|||+|||+. +++++|.++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|.+|| .|||..|.|++|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999998875 5899999999999999999999 99999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
.++.+.
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 998753
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=112.56 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=70.9
Q ss_pred ccCCCCcEEEEeCCCCCCC-----------HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 30 AKYKDSAYVYVGGIPFDLT-----------EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~-----------~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
....++.+|+|.||..... +++|.++|.+||.|..|.| .+. .++|||||+|.+.++|++||..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999954432 5899999999999999965 443 379999999999999999999999
Q ss_pred CceeCCeEeEEEeccCcc
Q 022420 99 GAQILGRTIRVDHVAKYK 116 (297)
Q Consensus 99 g~~l~g~~i~V~~~~~~~ 116 (297)
|..|.|++|.|.++.+..
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 999999999999987643
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.5e-15 Score=129.42 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=74.9
Q ss_pred ccCCCCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
...++.++|||+|||+ .+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|+|..|.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456789999999999 99999999999999999999999875 78999999999999999999999999999999
Q ss_pred EEeccCc
Q 022420 109 VDHVAKY 115 (297)
Q Consensus 109 V~~~~~~ 115 (297)
|.++...
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9998754
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=4.1e-15 Score=130.49 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=72.1
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEeEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTIRV 109 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i~V 109 (297)
...+.++|||+|||..+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|++||+.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998654 589999999999999999999999999 999999
Q ss_pred Eecc
Q 022420 110 DHVA 113 (297)
Q Consensus 110 ~~~~ 113 (297)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9974
No 189
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=3.5e-15 Score=111.60 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCC--CCC--------CHHHHHHHhccCCCeEEEEEeecCCC--CCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 33 KDSAYVYVGGIP--FDL--------TEGDLLAVFAQCGEIVDVNLVRDKGT--GKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 33 ~~~~~v~V~nL~--~~~--------~~~~L~~~F~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
+|+.+|.|.||- ..+ .+++|+++|++||+|..|.|+.+..+ +.++|||||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578899999983 233 23789999999999999999987654 367999999999999999999999999
Q ss_pred eeCCeEeEEEeccC
Q 022420 101 QILGRTIRVDHVAK 114 (297)
Q Consensus 101 ~l~g~~i~V~~~~~ 114 (297)
.|.|++|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=4.8e-15 Score=126.33 Aligned_cols=78 Identities=19% Similarity=0.340 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEeEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i~V 109 (297)
.++..+|||+|||..+++++|.++|.+|| .|..|.|+.. .+|||||+|.+.++|.+||..|||..|. |++|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34578999999999999999999999999 9999999653 2689999999999999999999999999 999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++.+
T Consensus 223 ~~a~~ 227 (229)
T 2adc_A 223 SFSKS 227 (229)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99865
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=124.09 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC-CeEeEE
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-GRTIRV 109 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-g~~i~V 109 (297)
.++.++|||+|||..+++++|.++|.+|| .|..|.|+.+. +|||||+|.+.++|.+||..|||..|. |++|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 35688999999999999999999999999 99999997642 789999999999999999999999999 999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++.+
T Consensus 192 ~~a~~ 196 (198)
T 1qm9_A 192 SFSKS 196 (198)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 99865
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=1.3e-14 Score=126.20 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC-CceeC---CeEe
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN-GAQIL---GRTI 107 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-g~~l~---g~~i 107 (297)
..+..+|||+|||+.+++++|.++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|| +..+. +++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 456789999999999999999999999999999999999 489999999999999999999999995 55554 8999
Q ss_pred EEEeccCc
Q 022420 108 RVDHVAKY 115 (297)
Q Consensus 108 ~V~~~~~~ 115 (297)
.|.++...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=3e-15 Score=125.52 Aligned_cols=78 Identities=13% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCe--EEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCe----E
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEI--VDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGR----T 106 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i--~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~----~ 106 (297)
+|..+|||+|||+.+++++|.++|++||.| ..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 889888764 55679999999999999999999999999876 5
Q ss_pred eEEEec
Q 022420 107 IRVDHV 112 (297)
Q Consensus 107 i~V~~~ 112 (297)
|.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=7e-15 Score=127.83 Aligned_cols=79 Identities=30% Similarity=0.596 Sum_probs=72.8
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|..||..|+|..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 44567789999999999999999999999999999998654 699999999999999999999999999999999
Q ss_pred EeccC
Q 022420 110 DHVAK 114 (297)
Q Consensus 110 ~~~~~ 114 (297)
.++.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99875
No 195
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=1e-14 Score=111.19 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhccCCCeEEEEEeecCC----CCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 33 KDSAYVYVGGIPF-----DLTEGDLLAVFAQCGEIVDVNLVRDKG----TGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 33 ~~~~~v~V~nL~~-----~~~~~~L~~~F~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
+|+.+|+|.||-. .-.+++|+++|++||+|..|.|+.+.. ++.++|||||+|.+.++|.+|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3788999999943 124689999999999999999998754 3567899999999999999999999999999
Q ss_pred CeEeEEEeccC
Q 022420 104 GRTIRVDHVAK 114 (297)
Q Consensus 104 g~~i~V~~~~~ 114 (297)
|++|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999754
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=8.5e-16 Score=125.09 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=73.0
Q ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 31 KYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
...+.++|||+|||+.+++++|.++|..||.|..+ ++.+..++.++|||||+|.+.++|++|| .|||..|.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 45678899999999999999999999999977663 3334457788999999999999999999 699999999999999
Q ss_pred eccCcc
Q 022420 111 HVAKYK 116 (297)
Q Consensus 111 ~~~~~~ 116 (297)
++.+..
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987644
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1.8e-15 Score=113.06 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=64.7
Q ss_pred EeCCCCCCCHHHHHHHh------------ccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 40 VGGIPFDLTEGDLLAVF------------AQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 40 V~nL~~~~~~~~L~~~F------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
+.+||+.+++++|.++| ++||+|..|.|+.+. ++.++|||||+|.+.++|++|+..|||..|.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 999999999999876 57899999999999999999999999999999999
Q ss_pred EEEecc
Q 022420 108 RVDHVA 113 (297)
Q Consensus 108 ~V~~~~ 113 (297)
+|.+++
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999863
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=3.8e-15 Score=123.81 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=71.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEec
Q 022420 34 DSAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHV 112 (297)
Q Consensus 34 ~~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~ 112 (297)
..++|||+|||+ .+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|++||..|||..|.|++|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred cCc
Q 022420 113 AKY 115 (297)
Q Consensus 113 ~~~ 115 (297)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=1.3e-14 Score=127.81 Aligned_cols=87 Identities=16% Similarity=0.266 Sum_probs=73.2
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCC-CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCG-EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
....+..+|||+|||+.+++++|.++|.+|| .|..|.|+.+.. +.++|||||+|.+.++|.+||..|+|..|.|++|.
T Consensus 112 v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 112 VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345789999999999999999999999999 999999998864 78899999999999999999999999999999999
Q ss_pred EEeccCccc
Q 022420 109 VDHVAKYKK 117 (297)
Q Consensus 109 V~~~~~~~~ 117 (297)
|.++.+...
T Consensus 191 v~~a~~~~~ 199 (292)
T 2ghp_A 191 TKVSNPLEK 199 (292)
T ss_dssp EEECCCC--
T ss_pred EEECCCCcc
Confidence 999876543
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3e-14 Score=115.37 Aligned_cols=77 Identities=25% Similarity=0.577 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
.+.++|||+|||+.+++++|.++|++| | .|..+.+.. ++|||||+|.+.++|++|| .||+..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 457899999999999999999999999 6 777777654 3799999999999999999 999999
Q ss_pred eCCeEeEEEeccCcc
Q 022420 102 ILGRTIRVDHVAKYK 116 (297)
Q Consensus 102 l~g~~i~V~~~~~~~ 116 (297)
|.|++|.|.++....
T Consensus 75 ~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQ 89 (172)
T ss_dssp ETTEECEEECCSSCC
T ss_pred ecCceeeecCCcccC
Confidence 999999999876543
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.2e-14 Score=116.09 Aligned_cols=75 Identities=25% Similarity=0.575 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQC----G-------EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
..++|||+|||+.+++++|.++|++| | .|..+.+. .++|||||+|.+.++|++|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666554 34799999999999999999 9999999
Q ss_pred CCeEeEEEeccCc
Q 022420 103 LGRTIRVDHVAKY 115 (297)
Q Consensus 103 ~g~~i~V~~~~~~ 115 (297)
.|++|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=9.6e-14 Score=124.37 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=68.4
Q ss_pred ccccCCCCcEEEEeC--CCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC--
Q 022420 28 WHAKYKDSAYVYVGG--IPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL-- 103 (297)
Q Consensus 28 ~~~~~~~~~~v~V~n--L~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~-- 103 (297)
+.....|+.+|||+| |++.+++++|+++|++||+|..|.|+. .+|||||+|.+.++|++||+.|||.++.
T Consensus 11 v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred ceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 334467889999999 578999999999999999999987753 3799999999999999999999999883
Q ss_pred -Ce--EeEEEecc
Q 022420 104 -GR--TIRVDHVA 113 (297)
Q Consensus 104 -g~--~i~V~~~~ 113 (297)
|. +|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 44 67788774
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.2e-13 Score=99.11 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccCcc
Q 022420 45 FDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAKYK 116 (297)
Q Consensus 45 ~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~~~ 116 (297)
..+++++|+++|.+||.|..|.|+ +.++|||||+|.+.++|+.||+.+++ +.+++|+|.++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999988 35689999999999999999987554 679999999987644
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=5.7e-13 Score=100.82 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=66.7
Q ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022420 33 KDSAYVYVGGIPFDL----------TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~----------~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
.++.+|.|.||-... .+++|.++|++||.|..|.|+.+. ++|||||+|.+.++|++|++.|||..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 467789998885432 235789999999999999887653 589999999999999999999999999
Q ss_pred CCeEeEEEeccC
Q 022420 103 LGRTIRVDHVAK 114 (297)
Q Consensus 103 ~g~~i~V~~~~~ 114 (297)
.|+.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999854
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.8e-12 Score=90.28 Aligned_cols=74 Identities=27% Similarity=0.429 Sum_probs=63.6
Q ss_pred CCCCcEEEEeCCC----CCCCH----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeC
Q 022420 32 YKDSAYVYVGGIP----FDLTE----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQIL 103 (297)
Q Consensus 32 ~~~~~~v~V~nL~----~~~~~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~ 103 (297)
.+|.-||+|.-++ .++.. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||..|.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4677889888776 23333 6789999999999999999874 8999999999999996 9999999
Q ss_pred CeEeEEEeccC
Q 022420 104 GRTIRVDHVAK 114 (297)
Q Consensus 104 g~~i~V~~~~~ 114 (297)
|+.|+|.++.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.7e-12 Score=96.12 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=69.5
Q ss_pred cCCCCcEEEEeCCCCC-CCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC-HHHHHHHHHHhC--CceeCCeE
Q 022420 31 KYKDSAYVYVGGIPFD-LTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED-QRSTILAVDNLN--GAQILGRT 106 (297)
Q Consensus 31 ~~~~~~~v~V~nL~~~-~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~l~g~~ 106 (297)
..++.+.|||+||+.. ++.++|+++|++||+|.+|.|+.+.. .|||.|.+ ..+|+.|++.|+ +..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4578899999999999 99999999999999999999988753 59999999 899999999995 78899998
Q ss_pred eEEEeccC
Q 022420 107 IRVDHVAK 114 (297)
Q Consensus 107 i~V~~~~~ 114 (297)
++|++...
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 98887653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=3.2e-11 Score=86.38 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=63.5
Q ss_pred ccCCCCcEEEEeCCCCC-----CCH----HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 30 AKYKDSAYVYVGGIPFD-----LTE----GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~-----~~~----~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
...+|.-||+|.-++.. +.. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 45678889999888742 322 5688999999999999999874 9999999999999996 9999
Q ss_pred eeCCeEeEEEec
Q 022420 101 QILGRTIRVDHV 112 (297)
Q Consensus 101 ~l~g~~i~V~~~ 112 (297)
.|.|+.|+|.+.
T Consensus 81 ~v~Gr~L~V~~k 92 (95)
T 1ufw_A 81 KVKGRAVKISGP 92 (95)
T ss_dssp EETTEEEEEECC
T ss_pred eeCCeEEEEecc
Confidence 999999999864
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1.5e-09 Score=91.60 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCHHHHHHHhccCCCeEEEEEeecC----CCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEEeccC
Q 022420 47 LTEGDLLAVFAQCGEIVDVNLVRDK----GTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVDHVAK 114 (297)
Q Consensus 47 ~~~~~L~~~F~~~G~i~~v~i~~~~----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~~~~~ 114 (297)
-.+++|.+.|++||.|..|.|+.+. .++.++|++||+|.+.++|++|+..|||..|.|++|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568899999999999999998554 3458899999999999999999999999999999999999754
No 209
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.83 E-value=4.1e-09 Score=97.82 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=10.7
Q ss_pred HHHHhccCCCeEEE
Q 022420 52 LLAVFAQCGEIVDV 65 (297)
Q Consensus 52 L~~~F~~~G~i~~v 65 (297)
|.+||.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 56788888887776
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.5e-08 Score=71.01 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=66.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccC-----CCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEe
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQC-----GEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTI 107 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i 107 (297)
....+|-|-|||..++...|..|+.+| |.|..|.+..+. +-|+|+|.+...|.+|.-.|+|.+|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346788899999999999999999999 999999998875 459999999999999999999999999999
Q ss_pred EEEec
Q 022420 108 RVDHV 112 (297)
Q Consensus 108 ~V~~~ 112 (297)
+|...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99754
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=6.3e-06 Score=59.94 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=62.3
Q ss_pred CcEEEEeCCCCCC-C----HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEE
Q 022420 35 SAYVYVGGIPFDL-T----EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRV 109 (297)
Q Consensus 35 ~~~v~V~nL~~~~-~----~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V 109 (297)
.++|+|+||+..+ . .+.++.+|..|+++....+.... .=..|.|.+.++|.+|-..|++..|+|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998865 2 25788999999988877666543 24789999999999999999999999999999
Q ss_pred EeccCc
Q 022420 110 DHVAKY 115 (297)
Q Consensus 110 ~~~~~~ 115 (297)
-++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 988743
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.05 E-value=6.5e-05 Score=53.63 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=64.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--CceEEEEEecCHHHHHHHHHHhCCceeCC-----eEeE
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK--PRGFAFVAYEDQRSTILAVDNLNGAQILG-----RTIR 108 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~l~g-----~~i~ 108 (297)
++|.|.+||+.+|++++.+.+..+..+....++..+.+.+ .-.-|||.|.+.+++....+.++|+.+.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5799999999999999999999988887776665544332 34679999999999999999999998742 2446
Q ss_pred EEeccCcc
Q 022420 109 VDHVAKYK 116 (297)
Q Consensus 109 V~~~~~~~ 116 (297)
|++|..++
T Consensus 82 VE~AP~qk 89 (91)
T 1uw4_A 82 VEFAPFQK 89 (91)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCc
Confidence 78776544
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.6e-05 Score=55.74 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcc-----CCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeE
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQ-----CGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIR 108 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~-----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~ 108 (297)
-..+|.|.|||+.+.++.|+-+|+. =|+|..|.... +-|+|+|.+...|+..| +-..+.|.+.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEE
Confidence 3568999999999999999999986 25888887754 35999999999999998 5657889999999
Q ss_pred EEeccC
Q 022420 109 VDHVAK 114 (297)
Q Consensus 109 V~~~~~ 114 (297)
|....+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 976443
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.79 E-value=7.9e-05 Score=53.27 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=46.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
-.+.++| .+|+.+...+|.++|..||. ..|.++.+. .|||.|.+.+.|..||..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456666 99999999999999999994 446677663 69999999999999997663
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.78 E-value=4.1e-05 Score=54.93 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=46.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
+.++| ++|+.+...+|.++|+.|| -..|.++.+. -|||.|.+++.|..||..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 5567777763 69999999999999998765
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00023 Score=53.12 Aligned_cols=72 Identities=22% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCC-eEeEEEe
Q 022420 33 KDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILG-RTIRVDH 111 (297)
Q Consensus 33 ~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g-~~i~V~~ 111 (297)
...+.|.|-++|+.. ...|...|++||.|+...... ...+-.|.|.+..+|++|| ..||..|.+ -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 345678888999885 577889999999999887631 2358999999999999999 889999985 5566665
Q ss_pred c
Q 022420 112 V 112 (297)
Q Consensus 112 ~ 112 (297)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.68 E-value=0.00012 Score=52.52 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCC--CceEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q 022420 34 DSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGK--PRGFAFVAYEDQRSTILAVDNLNGAQILG-----RT 106 (297)
Q Consensus 34 ~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~l~g-----~~ 106 (297)
.+-+|.|..||+.+|++++.+.+..+-++....++....+.+ .-.-|||.|.+.+++....+.++|..+-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 345799999999999999988888765544333333222222 22458999999999999999999998742 24
Q ss_pred eEEEeccCc
Q 022420 107 IRVDHVAKY 115 (297)
Q Consensus 107 i~V~~~~~~ 115 (297)
..|++|+.+
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 567777643
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.96 E-value=0.00083 Score=50.83 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=54.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEE-EEeec--------CCCC-----CCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDV-NLVRD--------KGTG-----KPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v-~i~~~--------~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
...|.|-++|+... ..|...|++||.|++- .+... .... ....+..|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 45577889977655 6678899999998762 11110 0000 12457799999999999999 89999
Q ss_pred eeCCeEeEEEecc
Q 022420 101 QILGRTIRVDHVA 113 (297)
Q Consensus 101 ~l~g~~i~V~~~~ 113 (297)
.|.|.-|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877777664
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.77 E-value=0.0032 Score=49.32 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 64 DVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 64 ~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
.+.|+.+. .+++|||||+|.+.++|++||+.+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 45677764 36899999999999999999988775
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.64 E-value=0.00097 Score=61.67 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 95 (297)
..+|||. +|..+++.+|.++|++||+|..+.+..+. .-||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4699997 79999999999999999999999887654 3799999999999997773
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.18 E-value=0.0028 Score=49.31 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=37.3
Q ss_pred CCCCceEEEEEecCHHHHHHHHHHh-CCceeCCeEeEEEeccC
Q 022420 73 TGKPRGFAFVAYEDQRSTILAVDNL-NGAQILGRTIRVDHVAK 114 (297)
Q Consensus 73 ~~~~~g~afV~f~~~~~a~~A~~~l-~g~~l~g~~i~V~~~~~ 114 (297)
....+|+++|+|.+.++|++||+.| ||..|.| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567899999999999999999999 9999999 999998764
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.26 E-value=0.21 Score=46.89 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=45.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 4567776 99999999999999999954 5556554 2699999999999999988853
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=86.46 E-value=1.3 Score=29.69 Aligned_cols=67 Identities=12% Similarity=0.274 Sum_probs=41.2
Q ss_pred EEEEeCC-CCCCCHHHHHHHhccCC-----CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCceeCCeEeEEE
Q 022420 37 YVYVGGI-PFDLTEGDLLAVFAQCG-----EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQILGRTIRVD 110 (297)
Q Consensus 37 ~v~V~nL-~~~~~~~~L~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l~g~~i~V~ 110 (297)
+|||..= ...+...+|..++..-+ .|-.|.|..+ |.||+.... .|..++..|++..+.|+.|.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 5666321 22466677777776433 4566766543 689988744 4677888999999999999987
Q ss_pred ec
Q 022420 111 HV 112 (297)
Q Consensus 111 ~~ 112 (297)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 224
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=83.00 E-value=0.3 Score=35.71 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCcEEEEeCCCCCCCHHH
Q 022420 32 YKDSAYVYVGGIPFDLTEGD 51 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~ 51 (297)
..+.++|||+|||+.+|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34556899999999998763
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.43 E-value=9.5 Score=29.99 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=37.8
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--ccCCCeEEEEEeecCCCCCCceEEEEEecC-HHHHHHHH
Q 022420 36 AYVYVGGIPF-D--------LTEGDLLAVF--AQCGEIVDVNLVRDKGTGKPRGFAFVAYED-QRSTILAV 94 (297)
Q Consensus 36 ~~v~V~nL~~-~--------~~~~~L~~~F--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~~~a~~A~ 94 (297)
.+++|.|+|. . .....|.+.| ..|.++....+. +. ..+.|+|.|+|.. -.-...|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC--CCCceeEEEEecCChHHHHHHH
Confidence 4677889887 2 3457899977 899887644443 32 3468999999985 44444454
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=77.88 E-value=15 Score=25.47 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc-------eeCC
Q 022420 32 YKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA-------QILG 104 (297)
Q Consensus 32 ~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-------~l~g 104 (297)
.+..+-|-|-|||..+-..++.......|---.|..+. |.|.|.|.+.+....||.+|-++ +|.|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirg 80 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRG 80 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETT
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcc
Confidence 45678888899999999998888777888777777663 46999999999999998876322 3556
Q ss_pred eEeEEE
Q 022420 105 RTIRVD 110 (297)
Q Consensus 105 ~~i~V~ 110 (297)
..+-|-
T Consensus 81 qicdvi 86 (129)
T 4eyt_A 81 QICDVI 86 (129)
T ss_dssp EEEEEE
T ss_pred eeeeee
Confidence 655554
No 227
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=66.36 E-value=38 Score=25.17 Aligned_cols=53 Identities=6% Similarity=-0.108 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCC
Q 022420 42 GIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 99 (297)
.++... .+++.+.+..+-.|..|..+. |...-++.|.+.+.++....+..+.+
T Consensus 72 ~~~~~~-~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 72 TVKNAD-YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EEGGGC-HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred EECccc-HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 444433 567888888899999998774 34456788999999999999988865
No 228
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=63.80 E-value=21 Score=22.79 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=42.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
.++.|.+|.-......|+..+.. ..|..+.+-.. .+-+.|+|.+.+....+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 46889999999899999999998 77887776543 356788888666777777543
No 229
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.08 E-value=40 Score=25.23 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=39.5
Q ss_pred CCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH-HhC
Q 022420 42 GIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD-NLN 98 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~l~ 98 (297)
.++.....+++.+.+..+-.|..|..+ +|...-++.|.+.+.++....+. .+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 344433457788889999999999887 45556678899999999988873 444
No 230
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=57.52 E-value=60 Score=24.62 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=54.7
Q ss_pred ChHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEEe-CCCCCC--CHHHHHHHhccCCCeEEEEEeecCCCCCCce
Q 022420 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYVG-GIPFDL--TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRG 78 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~-nL~~~~--~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g 78 (297)
.+.++...++.+.+..+........... ...-..+.||. .++... ..+.+.+.+..+-.|..|..+ +|...-
T Consensus 30 s~~tv~~rl~~L~~~g~i~~~~a~~~~~-~lG~~~~a~v~v~v~~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~D~ 104 (162)
T 3i4p_A 30 STTPCWRRIQKMEEDGVIRRRVALLDPV-KVNTKVTVFVSIRTASHSIEWLKRFSEVVSEFPEVVEFYRM----SGDVDY 104 (162)
T ss_dssp CHHHHHHHHHHHHHTTSSCCCCCCCCTT-TTTCCEEEEEEEECCSCCHHHHHHHHHHHHHCTTEEEEEEC----CSSCSE
T ss_pred CHHHHHHHHHHHHHCCCeeeceeeeCHH-HhcCcEEEEEEEEEcCCChHHHHHHHHHHhcCCCEEEeeec----CCCCCE
Confidence 3556666677776665544322222211 11112234442 555543 246777778888899999876 455566
Q ss_pred EEEEEecCHHHHHHHHHHh
Q 022420 79 FAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 79 ~afV~f~~~~~a~~A~~~l 97 (297)
+++|.+.+.++....+..+
T Consensus 105 ~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 105 LLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp EEEEEESSHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHH
Confidence 7889999999988887543
No 231
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=56.76 E-value=66 Score=24.80 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=52.6
Q ss_pred hHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEE-eCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEE
Q 022420 3 PLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYV-GGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V-~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~af 81 (297)
+.++...++.+.+..+............ ..-..+.|| -.++. ...+++.+.+..+-.|..|..+ +|...-++.
T Consensus 55 ~~tv~~rl~~L~~~G~I~~~~a~vd~~~-~G~~~~a~v~v~~~~-~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~ 128 (171)
T 2e1c_A 55 ESTIHERIRKLRESGVIKKFTAIIDPEA-LGYSMLAFILVKVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVK 128 (171)
T ss_dssp HHHHHHHHHHHHHTTSSCCCCCCCCGGG-GTCCEEEEEEEEECT-TCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEE
T ss_pred HHHHHHHHHHHHHCCCeEeeeEEECHHH-cCCCEEEEEEEEECc-chHHHHHHHHhcCcCeEEEEEe----eCCCCEEEE
Confidence 4455555666655544333222111111 111222333 24553 3457788888999999999876 455556788
Q ss_pred EEecCHHHHHHHHHHh
Q 022420 82 VAYEDQRSTILAVDNL 97 (297)
Q Consensus 82 V~f~~~~~a~~A~~~l 97 (297)
|.+.+.++....+..|
T Consensus 129 v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 129 IRTKNSEELNNFLDLI 144 (171)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHH
Confidence 9999999888877554
No 232
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=54.14 E-value=65 Score=23.98 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=54.0
Q ss_pred hHHHHHHhhhhhhhhhccCCCCCccccccCCCCcEEEE-eCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEE
Q 022420 3 PLTQVKRIQHINSKEADLGISDDASWHAKYKDSAYVYV-GGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAF 81 (297)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V-~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~af 81 (297)
+.++...+..+.+..+............ ..-..+.|| -.++. ...+++.+.+..+-.|..|..+ +|...-++.
T Consensus 35 ~~tv~~~l~~L~~~G~i~~~~~~~d~~~-~G~~~~a~v~v~~~~-~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~ 108 (151)
T 2cyy_A 35 ESTIHERIRKLRESGVIKKFTAIIDPEA-LGYSMLAFILVKVKA-GKYSEVASNLAKYPEIVEVYET----TGDYDMVVK 108 (151)
T ss_dssp HHHHHHHHHHHHHHTSSCCCCCCCCGGG-GTCCEEEEEEEEECT-TCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEECHHH-CCccEEEEEEEEECc-ccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEE
Confidence 4455555666655544333222222111 111222333 24553 3457888889999999999876 455556788
Q ss_pred EEecCHHHHHHHHHHhCC
Q 022420 82 VAYEDQRSTILAVDNLNG 99 (297)
Q Consensus 82 V~f~~~~~a~~A~~~l~g 99 (297)
|.+.+.++....++.+..
T Consensus 109 v~~~d~~~l~~~~~~l~~ 126 (151)
T 2cyy_A 109 IRTKNSEELNNFLDLIGS 126 (151)
T ss_dssp EEESSHHHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHhC
Confidence 999999998887765543
No 233
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=52.86 E-value=31 Score=23.82 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=26.9
Q ss_pred CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 61 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
.|..|.++.. ..||.||++...+++..+|..+.|.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 3666666543 5899999999999988888777664
No 234
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=50.15 E-value=15 Score=27.23 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred eEEEEEecCHHHHHHHHHHhCCceeCCe
Q 022420 78 GFAFVAYEDQRSTILAVDNLNGAQILGR 105 (297)
Q Consensus 78 g~afV~f~~~~~a~~A~~~l~g~~l~g~ 105 (297)
-++|++|++...+..|+..|+|....|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 4789999999999999999988765543
No 235
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=48.46 E-value=76 Score=23.09 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=36.2
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH-HHhCC
Q 022420 48 TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV-DNLNG 99 (297)
Q Consensus 48 ~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~~l~g 99 (297)
....+.+.+..+..|..|..+ +|...-++.|.+.+.++....+ +.+..
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~~ 124 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIGK 124 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 446777888889999988665 4555667789999999998888 55543
No 236
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=48.20 E-value=29 Score=29.26 Aligned_cols=34 Identities=9% Similarity=0.305 Sum_probs=26.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~ 69 (297)
...+.|+|||++++...|..++.. ..+..+.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356789999999999999999987 6666554443
No 237
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=46.51 E-value=52 Score=20.62 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=41.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE----DQRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 97 (297)
.++.|.++.-......|+..+.....|..+.+... .+-+.|+|. +.+....||..+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 36788899888888899999998877887776544 346888885 456777777543
No 238
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=46.39 E-value=76 Score=23.51 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=33.9
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
+.+.+.+..+-.|..|..+. |...-++.|.+.+.++....+..+
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~----G~~d~~~~v~~~~~~~l~~~l~~l 125 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVA----GEASYVLLVRVASARALEDLLQRI 125 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeE----CCCCEEEEEEECCHHHHHHHHHHH
Confidence 66778888888999998764 444567788999988888777655
No 239
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=43.30 E-value=33 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=27.7
Q ss_pred CeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCce
Q 022420 61 EIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 61 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
.|.+|..+.+ .+||-|||=..+..+..||..+.+..
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4777755433 48999999999999999998776543
No 240
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.68 E-value=1.1e+02 Score=22.88 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH-HhC
Q 022420 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD-NLN 98 (297)
Q Consensus 49 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~l~ 98 (297)
.+++.+.+..+-.|..|..+. |...-++.|.+.+.++....+. .+.
T Consensus 85 ~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~ 131 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALT----GETDYLLQAFFTDMNAFSHFVLDTLL 131 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcChhhhEeeeec----CCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 567778888898999998763 4445677889999999988873 444
No 241
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=39.24 E-value=22 Score=34.25 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=40.1
Q ss_pred eCCCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 41 GGIPFDLTEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 41 ~nL~~~~~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
+.++.+.+-.+|..+|- .+|-|+.+.|-..+ ......+++|.|.+.++|..|+..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 34555666678888883 57888888776544 2334567899999999988887654
No 242
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=37.26 E-value=50 Score=20.30 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec---CHHHHHHHHH
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRSTILAVD 95 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~~~a~~A~~ 95 (297)
.++.|.+|.-......|+..+.....|..+.+... .+-+.|+|. +.+....+|.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHH
Confidence 36788899888888899999998877887776543 245778874 3455666664
No 243
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.53 E-value=29 Score=24.49 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCc
Q 022420 42 GIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGA 100 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 100 (297)
.++.-+.-++|..-.. .||.-..+..+.+. +.|-..+.++..+||+.|+-.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E--------llIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSS--------SCEECCSHHHHHHHHHHHHHC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecce--------EEEeccCHHHHHHHHHHHccC
Confidence 5577777777775554 68888888776332 689999999999999887643
No 244
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=34.12 E-value=16 Score=30.95 Aligned_cols=35 Identities=11% Similarity=0.397 Sum_probs=27.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~ 69 (297)
...+.|+|||++++..-|..++.....+..+.++.
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 34678999999999999999998655566655544
No 245
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=33.32 E-value=76 Score=18.71 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=36.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec---CHHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE---DQRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~~~a~~A~~~l 97 (297)
++.|.++.-......|+..+.....|..+.+-.. .+.+.|+|. +.+....+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 4567777777677888899988867777766543 345778875 345555666443
No 246
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=32.76 E-value=83 Score=20.78 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=40.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
.+|.|.+|........|+..+...-.|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~------~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE------NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT------TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 35778888877777889999998877888776543 2468888853 45666677554
No 247
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=32.49 E-value=82 Score=22.25 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhcc-CC---CeEEE-EEeecCCCCCCceEEEEEecCHHHHHHH
Q 022420 45 FDLTEGDLLAVFAQ-CG---EIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTILA 93 (297)
Q Consensus 45 ~~~~~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~A 93 (297)
..++..+|.+.+.+ |+ .+..| .|....-.+++.|||+| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677788766653 44 23333 34444445567777765 5666665544
No 248
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=31.86 E-value=1.5e+02 Score=21.71 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=54.0
Q ss_pred ChHHHHHHhhhhhhhhhccCCCCCccccccCCC-CcEEEEeCCCC-CCCHHHHHHHhccCCCeEEEEEeecCCCCCCceE
Q 022420 2 NPLTQVKRIQHINSKEADLGISDDASWHAKYKD-SAYVYVGGIPF-DLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGF 79 (297)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~V~nL~~-~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~ 79 (297)
.+.++...+..+.+..+............-... ...|.|. .+. ....+.+.+.+..+-.|..|..+ +|...-+
T Consensus 30 s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~-~~~~~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~ 104 (150)
T 2pn6_A 30 PKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVK-AKYGKNYHVELGNKLAQIPGVWGVYFV----LGDNDFI 104 (150)
T ss_dssp CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEE-ECCCTTHHHHHHHHHHTSTTEEEEEEC----SSSCSEE
T ss_pred CHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEE-ecCChhHHHHHHHHHhcCchhhhhhhh----cCcCCEE
Confidence 345556666666655554332221111111111 1233343 332 23456778888889999999876 4555567
Q ss_pred EEEEecCHHHHHHHH-HHhCC
Q 022420 80 AFVAYEDQRSTILAV-DNLNG 99 (297)
Q Consensus 80 afV~f~~~~~a~~A~-~~l~g 99 (297)
+.|.+.+.++....+ ..+..
T Consensus 105 ~~v~~~d~~~l~~~l~~~l~~ 125 (150)
T 2pn6_A 105 VMARYKTREEFMEKFLERVMS 125 (150)
T ss_dssp EEEEESSHHHHHHHTHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHhcc
Confidence 889999999988887 55553
No 249
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.39 E-value=39 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEee
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVR 69 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~ 69 (297)
...|+|||++++...|..++.....+..+.++.
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 447999999999999999998766666655553
No 250
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=31.30 E-value=1.2e+02 Score=21.08 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 42 GIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
.++.-+.-++|..... .||.-..+..+.+. -.|-..+.++..+||+.|+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhc
Confidence 5566777788876655 78988888777543 6788999999999997765
No 251
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.05 E-value=82 Score=23.32 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEe-cCHHHHHHHH-HHhC
Q 022420 49 EGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAY-EDQRSTILAV-DNLN 98 (297)
Q Consensus 49 ~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~-~~l~ 98 (297)
.+++.+.+..+-.|..|..+. |...-++.|.+ .+.++....+ ..+.
T Consensus 82 ~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~~d~~~l~~~~~~~l~ 129 (151)
T 2dbb_A 82 ADKVISEISDIEYVKSVEKGV----GRYNIIVRLLLPKDIKDAENLISEFLQ 129 (151)
T ss_dssp HHHHHHHHTTCTTEEEEEEEE----SSCSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEeEec----CCCCEEEEEEEcCCHHHHHHHHHHHhh
Confidence 357778888888999998874 44456788899 8998888777 4444
No 252
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=36.65 E-value=11 Score=26.44 Aligned_cols=70 Identities=14% Similarity=0.241 Sum_probs=37.3
Q ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHhccCCCeEEEE-------------EeecCCC----CCCceEEEEEecCHHHHHH
Q 022420 30 AKYKDSAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVN-------------LVRDKGT----GKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 30 ~~~~~~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~-------------i~~~~~~----~~~~g~afV~f~~~~~a~~ 92 (297)
...+..+-|-|-|||..+-..++.-.....|---.|. |..+... --..|.|.|.|.+.+....
T Consensus 13 veikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrl 92 (137)
T 2lsl_A 13 VEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRL 92 (137)
Confidence 3445566666777777665555443332222211111 1111100 0124789999998888888
Q ss_pred HHHHhCC
Q 022420 93 AVDNLNG 99 (297)
Q Consensus 93 A~~~l~g 99 (297)
||.+|-+
T Consensus 93 aiqklln 99 (137)
T 2lsl_A 93 AIQKLLN 99 (137)
Confidence 8876633
No 253
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=30.11 E-value=98 Score=21.89 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhcc-CC---CeEEE-EEeecCCCCCCceEEEEEecCHHHHHH
Q 022420 45 FDLTEGDLLAVFAQ-CG---EIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 45 ~~~~~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 92 (297)
..++..+|.+.+.+ |+ .+..| .|....-.+++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777766653 33 23333 34444445677777766 666666554
No 254
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=29.62 E-value=95 Score=18.68 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=38.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
.+|.|.++.-......|+..+...-.|..+.+-.. .+.+.|.|.. ......+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888877677788888888766877766543 3467788863 45556666443
No 255
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.99 E-value=8.7 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=15.5
Q ss_pred HHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec
Q 022420 50 GDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE 85 (297)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 85 (297)
++|.++|...|.|+.. .. .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 4556677777766543 21 2789999865
No 256
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=28.83 E-value=1.3e+02 Score=23.08 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=34.8
Q ss_pred CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHH-HHhCC
Q 022420 48 TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAV-DNLNG 99 (297)
Q Consensus 48 ~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~~l~g 99 (297)
..+.+.+.+..+-.|..|. +. |...-++.|.+.+.++....+ ..+..
T Consensus 96 ~~~~~~~~l~~~peV~~~~-vt----G~~dll~~v~~~d~~~l~~~l~~~l~~ 143 (171)
T 2ia0_A 96 YISYISSTLSALPGVLFVA-KS----GEDKIIALVGKNNKDELVKFIEENITS 143 (171)
T ss_dssp HHHHHHHHHHTSTTEEEEE-EE----TTTEEEEEEEESSTTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCeEEEE-Ec----CCCCEEEEEEECCHHHHHHHHHHHhhc
Confidence 4467778888898999998 53 444567788999998888887 45543
No 257
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.83 E-value=62 Score=26.67 Aligned_cols=32 Identities=9% Similarity=0.101 Sum_probs=23.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEE
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNL 67 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i 67 (297)
..+.|+|||++++...|..++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 45889999999999999998876544444433
No 258
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=27.76 E-value=1e+02 Score=18.43 Aligned_cols=55 Identities=13% Similarity=0.110 Sum_probs=37.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC---HHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED---QRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~A~~~l 97 (297)
++.|.++........|+..+.....|..+.+... .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5778888877777888899988877887776543 2467888863 34445555443
No 259
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.36 E-value=1.1e+02 Score=21.92 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhcc-CC---CeEEE-EEeecCCCCCCceEEEEEecCHHHHHH
Q 022420 46 DLTEGDLLAVFAQ-CG---EIVDV-NLVRDKGTGKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 46 ~~~~~~L~~~F~~-~G---~i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 92 (297)
.++..+|.+.+.+ |+ .+..| .|....-.+++.|||.| |.+.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5677777766653 43 23333 34444445567777766 666666654
No 260
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.31 E-value=42 Score=27.79 Aligned_cols=33 Identities=15% Similarity=0.482 Sum_probs=24.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEe
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLV 68 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~ 68 (297)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 468899999999999888888754345544443
No 261
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=27.27 E-value=1.6e+02 Score=20.39 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=41.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
.+|.|.+|........|+..+...-.|..+.+... .+.+.|+|.. ......+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788899988888999999998877887776543 3568888873 35556666443
No 262
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=33.02 E-value=13 Score=26.64 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=36.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCc-eEEEEEecCHHHHHHHHHHhCCce
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPR-GFAFVAYEDQRSTILAVDNLNGAQ 101 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~-g~afV~f~~~~~a~~A~~~l~g~~ 101 (297)
..||-|..+ ..++.|..+..+.+ +..+.|......|+.- -.-|-.|.+.++|.+|+..|....
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 445555443 34566677776665 3445555433233221 112347899999999998886544
No 263
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.46 E-value=36 Score=27.37 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=27.7
Q ss_pred eEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhCCcee
Q 022420 62 IVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLNGAQI 102 (297)
Q Consensus 62 i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~l 102 (297)
|.+|... + ..+||-|||=..+..+..||+.+.+...
T Consensus 139 I~Si~~~-d----~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQR-D----NYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECC-T----TSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEec-C----CCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 6666333 2 2589999999999999999988887643
No 264
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=26.05 E-value=1.3e+02 Score=19.16 Aligned_cols=56 Identities=9% Similarity=0.142 Sum_probs=40.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEec----CHHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYE----DQRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 97 (297)
.+|.|.+|........|+..+.....|..+.+-.. .+.+.|.|. +......+|+.+
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788899888888889999998877888776543 356888885 345566666544
No 265
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=25.70 E-value=1.8e+02 Score=20.93 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=6.1
Q ss_pred HHHHHHHHHhCCc
Q 022420 88 RSTILAVDNLNGA 100 (297)
Q Consensus 88 ~~a~~A~~~l~g~ 100 (297)
...+++|..+.|.
T Consensus 90 ~~ie~~l~~~~gv 102 (151)
T 1p6t_A 90 NRIEKRLNKIEGV 102 (151)
T ss_dssp HHHHHHHTTSSSE
T ss_pred HHHHHHHhcCCCc
Confidence 3444455455443
No 266
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.48 E-value=1.2e+02 Score=21.21 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=35.1
Q ss_pred hhhhccCCCCCccccccCCCCcEEEEeCCCCCC--------CHHHHHHHhccCCCeEEE
Q 022420 15 SKEADLGISDDASWHAKYKDSAYVYVGGIPFDL--------TEGDLLAVFAQCGEIVDV 65 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~--------~~~~L~~~F~~~G~i~~v 65 (297)
.+++-....-..+++.-..+...|+|.+||..+ .-..|+.++..--.|..+
T Consensus 21 geALG~~~pV~VPY~~i~~np~av~V~GLPegIpFr~P~~ygi~~Le~IL~~~~~I~F~ 79 (99)
T 2dzr_A 21 GEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILAVADKIKFT 79 (99)
T ss_dssp HHHHTCSSCCCCCHHHHHHCSSSEEEESCCTTCCSSCGGGSCHHHHHHHHHHTTTCEEE
T ss_pred HHHhCCCCceeCCHHHHhcCCCeEEEecCCCCCcccCCCcccHHHHHHHHHhccCcEEE
Confidence 444444445566666666677889999999865 457788888776667664
No 267
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=25.29 E-value=1.1e+02 Score=18.45 Aligned_cols=55 Identities=9% Similarity=0.191 Sum_probs=36.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
++.|.+|.-......|+..+.....|..+.+-.. .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 5778888776666778888887766766665433 2467888863 45556666544
No 268
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=25.18 E-value=1.2e+02 Score=18.17 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=37.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC---HHHHHHHHHH
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED---QRSTILAVDN 96 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~~~a~~A~~~ 96 (297)
++.|.++........|+..+.....|..+.+-.. .+.+.|.|.. .+....+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYP------KGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETT------TTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEcc------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4778888887777889999988877877776543 2457788764 3555566643
No 269
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=25.05 E-value=63 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=35.1
Q ss_pred EEEeCCCCCC----CHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHH
Q 022420 38 VYVGGIPFDL----TEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 38 v~V~nL~~~~----~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 95 (297)
-+||||..-. ....+.++..+||+|..+.+.. .-+|...+.+.|+.++.
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~ 69 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLI 69 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHT
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHH
Confidence 3688887542 2356777888999998887642 34677788898888873
No 270
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=24.65 E-value=1.3e+02 Score=20.65 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 42 GIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
.++.-+.-++|..-.. .||....+..+.+. -.|-..+.++..+||+.|+
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLD 68 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILD 68 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhc
Confidence 4566677777775554 78988888776442 5788899999999997765
No 271
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=24.40 E-value=1.1e+02 Score=19.00 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
++.|.++........|+..+.....|..+.+-.. .+.+.|.|.. ......+|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 6 YIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5778888888888889999988777776654322 3457788853 45556666544
No 272
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=24.39 E-value=1.2e+02 Score=17.94 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=38.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHH
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDN 96 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 96 (297)
++.|.++........|+..+.....|..+.+-.. .+.+.|+|.. .+....+|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 5788899888888889999998877877766543 3467888863 3455556643
No 273
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.28 E-value=2.2e+02 Score=21.22 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhc-cCCC---eEEE-EEeecCCCCCCceEEEEEecCHHHHHH
Q 022420 45 FDLTEGDLLAVFA-QCGE---IVDV-NLVRDKGTGKPRGFAFVAYEDQRSTIL 92 (297)
Q Consensus 45 ~~~~~~~L~~~F~-~~G~---i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 92 (297)
..++..+|.+.+. .|+. ++.| .|....-.+++.|||.| |.+.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 3578889988886 4552 2333 34444445567777766 566666554
No 274
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=24.17 E-value=95 Score=23.31 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=37.0
Q ss_pred EEEEeCCCCCCCHHH------HHHHhccCCCeEEEEEeecC-CCC--------------CCceEEEEEecCHHHHHHHHH
Q 022420 37 YVYVGGIPFDLTEGD------LLAVFAQCGEIVDVNLVRDK-GTG--------------KPRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~------L~~~F~~~G~i~~v~i~~~~-~~~--------------~~~g~afV~f~~~~~a~~A~~ 95 (297)
..||--+|..-.+.- .-++|..||-+..+...-+- ..| ..--|.+|+|.+.+...+|..
T Consensus 29 DGFv~pVP~ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 29 DGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 456666665443332 23889999977665443221 112 223588999999888877765
Q ss_pred Hh
Q 022420 96 NL 97 (297)
Q Consensus 96 ~l 97 (297)
++
T Consensus 109 kv 110 (141)
T 2okq_A 109 KM 110 (141)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 275
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=23.85 E-value=1.4e+02 Score=21.25 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=35.1
Q ss_pred hhhhccCCCCCccccccCCCCcEEEEeCCCCCC--------CHHHHHHHhccCCCeEEE
Q 022420 15 SKEADLGISDDASWHAKYKDSAYVYVGGIPFDL--------TEGDLLAVFAQCGEIVDV 65 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~--------~~~~L~~~F~~~G~i~~v 65 (297)
.+++-.....+.++..-..+...|+|.+||..+ .-..|+.++..--.|..+
T Consensus 31 geALG~~~pV~VPY~k~~~~p~~v~V~GLPegi~fR~P~~Ygi~~L~~ILe~~~~I~Fv 89 (109)
T 2d9b_A 31 GKALGKSTVVPVPYEKMLRDQSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGISFI 89 (109)
T ss_dssp HHHHTCSSCCCCCHHHHHHCCSSEEEESCCTTCCSCCTTSSCHHHHHHHHHTTTTCEEE
T ss_pred HHHcCCCCcccCCHHHHhcCCccEEEeeCCCCCccCCccccCHHHHHHHHHcCcCceEE
Confidence 444444455566676666777889999998754 456788888776666654
No 276
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=23.84 E-value=1.4e+02 Score=20.47 Aligned_cols=20 Identities=0% Similarity=0.044 Sum_probs=16.5
Q ss_pred CceEEEEEecCHHHHHHHHH
Q 022420 76 PRGFAFVAYEDQRSTILAVD 95 (297)
Q Consensus 76 ~~g~afV~f~~~~~a~~A~~ 95 (297)
......|+|.+.+.|..++.
T Consensus 52 ~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 52 HKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CSEEEEEEESSHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHC
Confidence 45678899999999998864
No 277
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=23.28 E-value=1.4e+02 Score=18.47 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=40.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
.++.|.++........|+..+.....|..+.+-.. .+.+.|.|.. .+....+|+.+
T Consensus 10 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788999988888999999988766766665543 3467888863 35566666544
No 278
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.18 E-value=52 Score=28.93 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc
Q 022420 36 AYVYVGGIPFDLTEGDLLAVFAQ 58 (297)
Q Consensus 36 ~~v~V~nL~~~~~~~~L~~~F~~ 58 (297)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999888888763
No 279
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=22.78 E-value=1.2e+02 Score=21.45 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHhc-cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHhC
Q 022420 42 GIPFDLTEGDLLAVFA-QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNLN 98 (297)
Q Consensus 42 nL~~~~~~~~L~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 98 (297)
.++.-+.-++|..-.. .||....+..+.+. -.|-..+.++..+||+.|+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLD 95 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILD 95 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhc
Confidence 5566777788776554 68888888776443 5788899999999997765
No 280
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=22.60 E-value=1.3e+02 Score=17.96 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=38.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
++.|.++........|+..+.....|..+.+-.. .+.+.|.|.. .+....+|+.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 5677888887778889999988877877766543 2467888863 45556666443
No 281
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.52 E-value=1.6e+02 Score=21.14 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=33.7
Q ss_pred hhhhccCCCCCccccccCCCCcEEEEeCCCCCC--------CHHHHHHHhccCCCeEEE
Q 022420 15 SKEADLGISDDASWHAKYKDSAYVYVGGIPFDL--------TEGDLLAVFAQCGEIVDV 65 (297)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~V~nL~~~~--------~~~~L~~~F~~~G~i~~v 65 (297)
.+++-+......++..-......|+|.+||..+ .-..|+.++..--.|..+
T Consensus 35 gkALG~~~pVkVPY~k~~~~P~~v~V~GLPeGi~fr~P~~ygi~~L~~IL~~~~~IsFv 93 (114)
T 2eje_A 35 GEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMRRILDSAEFIKFT 93 (114)
T ss_dssp HHHTTCSSCCCCCHHHHHHCSSSEEEECCCTTCCCCCTTTSCHHHHHHHHHTTTTCEEE
T ss_pred HHHcCCCCcccCCHHHHhcCCccEEeecCCCCCccCCCCcccHHHHHHHHhhccCceEE
Confidence 444444444455666556677789999999754 456777777766666654
No 282
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=22.28 E-value=1.4e+02 Score=18.16 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=38.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHHh
Q 022420 37 YVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDNL 97 (297)
Q Consensus 37 ~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 97 (297)
++.|.+|........|+..+...-.|..+.+-.. .+.+.|.|.. .+....+|..+
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5678888776677788888988777877766543 2467888853 45566666544
No 283
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=21.00 E-value=1.1e+02 Score=27.89 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHhc----cCCCeEEEEEeecCCCCCCceEEEEEecCHHHHHHHHHHh
Q 022420 43 IPFDLTEGDLLAVFA----QCGEIVDVNLVRDKGTGKPRGFAFVAYEDQRSTILAVDNL 97 (297)
Q Consensus 43 L~~~~~~~~L~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 97 (297)
++.+.+..+|..+|. .||-|+.+.|...+. ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 344444456666663 467788887765442 233567889999999888777655
No 284
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=20.34 E-value=1.5e+02 Score=17.83 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=39.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCeEEEEEeecCCCCCCceEEEEEecC----HHHHHHHHHH
Q 022420 35 SAYVYVGGIPFDLTEGDLLAVFAQCGEIVDVNLVRDKGTGKPRGFAFVAYED----QRSTILAVDN 96 (297)
Q Consensus 35 ~~~v~V~nL~~~~~~~~L~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 96 (297)
..++.|.++........|+..+.....|..+.+-.. .+.+.|.|.. ......+|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346889999988888889999998877887776543 3567888864 2334455543
No 285
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.22 E-value=1.3e+02 Score=20.52 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=20.7
Q ss_pred CeEEEEEeecCCCCCCceEEEEEecC
Q 022420 61 EIVDVNLVRDKGTGKPRGFAFVAYED 86 (297)
Q Consensus 61 ~i~~v~i~~~~~~~~~~g~afV~f~~ 86 (297)
+|+.|.|..-...++-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887666678889999999874
Done!