BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022423
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3
Length = 158
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 96/148 (64%)
Query: 14 IKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLA 73
++R++ V E E KV +AT N+PWGP + ++EIA T +M+++W RL
Sbjct: 6 LRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLN 65
Query: 74 ETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRK 133
+ GK+WR+VYKA+ ++EYLI GSER E+ + + +L F+YV+ GKD G+NVR+
Sbjct: 66 DHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 125
Query: 134 KAENIVALLNNKDKIQEVRNKASANREK 161
KA+ +VALL ++D+++E R A +EK
Sbjct: 126 KAKQLVALLRDEDRLREERAHALKTKEK 153
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal
Domain
Length = 176
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 11 VREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWT 70
VRE+ + V+ EIE KV +AT+++PWGP G + EIA+AT + + +MN+LW+
Sbjct: 18 VRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWS 77
Query: 71 R-LAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGI 129
R L + K+WR VYK+L ++ YLI +GSER V EH + + SL ++ +V+ GKD GI
Sbjct: 78 RMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGI 137
Query: 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167
N+R+K + +V + D+++E R KA N++KY G+SS
Sbjct: 138 NIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth)
Domain At 1.56 Angstrom Resolution
Length = 144
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 90/135 (66%)
Query: 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL 86
E E KV +AT N+PWGP + ++EIA T +M+++W RL + GK+WR+VYKA+
Sbjct: 5 EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAM 64
Query: 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKD 146
++EYLI GSER E+ + + +L F+YV+ GKD G+NVR+KA+ +VALL ++D
Sbjct: 65 TLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDED 124
Query: 147 KIQEVRNKASANREK 161
+++E R A +EK
Sbjct: 125 RLREERAHALKTKEK 139
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth)
Domain Of Human Epsin
Length = 148
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 92/139 (66%)
Query: 14 IKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLA 73
++R++ V E E KV +AT N+PWGP + ++EIA T +M+++W RL
Sbjct: 10 LRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLN 69
Query: 74 ETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRK 133
+ GK+WR+VYKA+ ++EYLI GSER E+ + + +L F+YV+ GKD G+NVR+
Sbjct: 70 DHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 129
Query: 134 KAENIVALLNNKDKIQEVR 152
KA+ +VALL ++D+++E R
Sbjct: 130 KAKQLVALLRDEDRLREER 148
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|B Chain B, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|C Chain C, Crystal Structure Of Human Epsinr Enth Domain
pdb|2V8S|E Chain E, Vti1b Habc Domain - Epsinr Enth Domain Complex
Length = 147
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
Query: 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTR-LAETGKDWRYVYKA 85
EIE KV +AT+++PWGP G + EIA+AT + + +MN+LW+R L + K+WR VYK+
Sbjct: 4 EIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKS 63
Query: 86 LAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNK 145
L ++ YLI +GSER V EH + + SL ++ +V+ GKD GIN+R+K + +V +
Sbjct: 64 LLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDD 123
Query: 146 DKIQEVRNKASANREKYFGLSS 167
D+++E R KA N++KY G+SS
Sbjct: 124 DRLREERKKAKKNKDKYVGVSS 145
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
Length = 150
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE-TGKDWRYVYKA 85
E+E KV +AT+NEPWG T + +I+Q T F E + ++++++ R E G +WR +YKA
Sbjct: 11 EMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKA 70
Query: 86 LAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNK 145
L +++YLI HGSER +DD I L +F Y++ G+D GINVR + + ++ LL++
Sbjct: 71 LQLLDYLIKHGSERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDD 130
Query: 146 DKIQEVRNKASANREKYFGL 165
+KI+ R KA +KY G+
Sbjct: 131 NKIRAERKKARETAKKYKGV 150
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1
Length = 149
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%)
Query: 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL 86
E E KV +AT N+PWGP + +EIA T + + +W RL + GK+WR+VYKA
Sbjct: 8 EAEIKVREATSNDPWGPSSSLXSEIADLTYNVVAFSEIXSXIWKRLNDHGKNWRHVYKAX 67
Query: 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKD 146
+ EYLI GSER E+ + + +L F+YV+ GKD G+NVR+KA+ +VALL ++D
Sbjct: 68 TLXEYLIKTGSERVSQQCKENXYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDED 127
Query: 147 KIQEVRNKASANREK 161
+++E R A +EK
Sbjct: 128 RLREERAHALKTKEK 142
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE------TGKDWRY 81
+ + V AT +E GP L + Q T + MNV +LA+ T W
Sbjct: 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNE-------MNVNIPQLADSLFERTTNSSWVV 81
Query: 82 VYKALAVIEYLISHGSERAV 101
V+K+L +L+ +G+ER +
Sbjct: 82 VFKSLITTHHLMVYGNERFI 101
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE------TGKDWRY 81
+ + V AT +E GP L + Q T + MNV +LA+ T W
Sbjct: 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNE-------MNVNIPQLADSLFERTTNSSWVV 81
Query: 82 VYKALAVIEYLISHGSERAV 101
V+K+L +L+ +G+ER +
Sbjct: 82 VFKSLITTHHLMVYGNERFI 101
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE------TGKDWRY 81
+ + V AT +E GP L + Q T + MNV +LA+ T W
Sbjct: 22 VSKTVCKATTHEIMGPKKKHLDYLIQCTNE-------MNVNIPQLADSLFERTTNSSWVV 74
Query: 82 VYKALAVIEYLISHGSERAV 101
V+K+L +L+ +G+ER +
Sbjct: 75 VFKSLITTHHLMVYGNERFI 94
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 28 IEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE------TGKDWRY 81
+ + V AT +E GP L + Q T + MNV +LA+ T W
Sbjct: 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNE-------MNVNIPQLADSLFERTTNSSWVV 81
Query: 82 VYKALAVIEYLISHGSERAV 101
V+K+L +L+ +G+ER +
Sbjct: 82 VFKSLITTHHLMVYGNERFI 101
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
pdb|1HX8|B Chain B, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180
Length = 299
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 28 IEQKVLDATDNEPWGPHGTALAEIAQ-ATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL 86
+ + V AT E GP L + A + + N+L R +W VYK+L
Sbjct: 24 LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER--SQNANWVVVYKSL 81
Query: 87 AVIEYLISHGSERAVDDIIE--HTFQISSLSSFEYVEPSGKDMGI 129
+L+++G+ER + + TF +SS V+ G MG+
Sbjct: 82 ITTHHLMAYGNERFMQYLASSNSTFNLSSFLDKGTVQDGG--MGV 124
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 51 IAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103
+ + F Q+ +N+ T W L ++++L+ HGS R D
Sbjct: 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 161
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 117 FEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKY 162
F YV+ +GK+ G +V + LL + DK++ V +A ANR +Y
Sbjct: 68 FGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEA-ANRVEY 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,121,846
Number of Sequences: 62578
Number of extensions: 256262
Number of successful extensions: 439
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 16
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)