Query 022423
Match_columns 297
No_of_seqs 140 out of 404
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2056 Equilibrative nucleosi 100.0 1.5E-57 3.2E-62 433.6 18.5 169 8-176 2-170 (336)
2 cd03571 ENTH_epsin ENTH domain 100.0 1.1E-50 2.3E-55 339.9 13.4 123 27-149 1-123 (123)
3 KOG2057 Predicted equilibrativ 100.0 1.1E-49 2.3E-54 378.9 17.8 209 9-228 5-230 (499)
4 PF01417 ENTH: ENTH domain; I 100.0 3.1E-44 6.7E-49 297.3 14.9 124 25-148 1-125 (125)
5 smart00273 ENTH Epsin N-termin 100.0 1.5E-35 3.2E-40 245.7 13.3 126 26-152 1-127 (127)
6 cd03572 ENTH_epsin_related ENT 99.9 6.8E-27 1.5E-31 196.4 10.1 113 30-145 4-120 (122)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.9 2.1E-23 4.5E-28 169.6 11.7 113 29-144 2-115 (115)
8 cd03564 ANTH_AP180_CALM ANTH d 99.8 3.5E-19 7.6E-24 146.4 11.1 112 28-142 1-114 (117)
9 PF07651 ANTH: ANTH domain; I 98.8 3.8E-08 8.2E-13 90.7 9.3 113 26-139 2-117 (280)
10 KOG0251 Clathrin assembly prot 98.3 3.9E-06 8.4E-11 85.2 11.6 111 24-138 20-134 (491)
11 PF00790 VHS: VHS domain; Int 98.1 9.1E-06 2E-10 68.9 7.9 109 25-142 3-116 (140)
12 cd03568 VHS_STAM VHS domain fa 97.7 0.0004 8.7E-09 59.9 10.5 107 29-143 2-109 (144)
13 smart00288 VHS Domain present 97.7 0.0004 8.7E-09 58.7 10.3 107 29-142 2-109 (133)
14 cd03565 VHS_Tom1 VHS domain fa 97.7 0.00052 1.1E-08 58.9 10.9 112 27-143 1-114 (141)
15 cd03569 VHS_Hrs_Vps27p VHS dom 97.7 0.00079 1.7E-08 57.9 11.5 111 25-143 2-113 (142)
16 cd03561 VHS VHS domain family; 97.6 0.00063 1.4E-08 57.3 10.4 109 29-143 2-111 (133)
17 cd03567 VHS_GGA VHS domain fam 97.4 0.0022 4.7E-08 55.3 11.4 111 27-143 1-115 (139)
18 KOG1087 Cytosolic sorting prot 96.8 0.011 2.3E-07 60.3 10.6 108 28-142 2-110 (470)
19 KOG2199 Signal transducing ada 93.8 0.54 1.2E-05 47.5 10.3 78 24-107 5-87 (462)
20 KOG1086 Cytosolic sorting prot 79.7 8.6 0.00019 39.8 8.2 33 76-109 57-89 (594)
21 cd03562 CID CID (CTD-Interacti 76.8 14 0.00031 29.6 7.4 105 27-144 3-108 (114)
22 KOG0980 Actin-binding protein 75.3 7.1 0.00015 43.1 6.5 107 30-140 9-115 (980)
23 smart00582 RPR domain present 67.1 23 0.0005 28.6 6.5 95 43-144 11-107 (121)
24 KOG1924 RhoA GTPase effector D 63.3 37 0.00081 37.6 8.8 65 46-110 369-437 (1102)
25 PF12755 Vac14_Fab1_bd: Vacuol 51.2 74 0.0016 25.7 6.8 75 59-144 23-97 (97)
26 KOG2176 Exocyst complex, subun 49.9 8.3 0.00018 42.0 1.4 46 26-78 16-63 (800)
27 PF12755 Vac14_Fab1_bd: Vacuol 49.7 37 0.0008 27.4 4.8 62 22-94 33-96 (97)
28 PF08513 LisH: LisH; InterPro 48.1 25 0.00054 22.1 2.9 20 87-106 6-25 (27)
29 PF06881 Elongin_A: RNA polyme 46.9 31 0.00066 28.1 4.0 42 43-87 19-73 (109)
30 smart00667 LisH Lissencephaly 45.1 25 0.00055 21.5 2.6 21 87-107 9-29 (34)
31 KOG1525 Sister chromatid cohes 42.1 1.6E+02 0.0035 34.2 9.9 121 31-155 409-538 (1266)
32 COG5602 SIN3 Histone deacetyla 35.7 1.5E+02 0.0034 33.4 8.1 70 16-86 578-658 (1163)
33 KOG0904 Phosphatidylinositol 3 34.4 1.3E+02 0.0028 34.0 7.3 100 43-152 541-648 (1076)
34 PF10151 DUF2359: Uncharacteri 34.2 52 0.0011 34.0 4.2 58 62-122 167-232 (469)
35 KOG2160 Armadillo/beta-catenin 33.7 1.4E+02 0.003 29.9 6.9 77 21-97 161-243 (342)
36 cd04962 GT1_like_5 This family 29.9 66 0.0014 29.4 3.8 33 130-162 322-355 (371)
37 PF07571 DUF1546: Protein of u 29.1 2.4E+02 0.0051 22.4 6.4 53 44-99 26-80 (92)
38 PF04904 NCD1: NAB conserved r 28.9 59 0.0013 26.2 2.8 39 45-87 33-71 (82)
39 KOG1818 Membrane trafficking a 28.0 1.6E+02 0.0035 31.7 6.7 87 26-114 7-96 (634)
40 cd03817 GT1_UGDG_like This fam 27.8 69 0.0015 28.3 3.4 30 133-162 332-361 (374)
41 PF09339 HTH_IclR: IclR helix- 27.8 17 0.00037 25.5 -0.4 27 82-108 2-28 (52)
42 KOG0624 dsRNA-activated protei 27.4 6.8E+02 0.015 25.9 10.5 110 44-155 222-350 (504)
43 KOG0037 Ca2+-binding protein, 27.4 1.1E+02 0.0024 28.9 4.7 51 30-84 77-131 (221)
44 KOG2003 TPR repeat-containing 25.6 3.7E+02 0.008 28.7 8.5 18 215-232 785-802 (840)
45 cd03820 GT1_amsD_like This fam 25.2 96 0.0021 26.9 3.8 33 130-162 305-337 (348)
46 cd03823 GT1_ExpE7_like This fa 24.7 1E+02 0.0022 27.3 3.9 67 85-158 277-343 (359)
47 PF06336 Corona_5a: Coronaviru 24.7 59 0.0013 24.8 2.0 36 72-107 4-45 (65)
48 PF13336 AcetylCoA_hyd_C: Acet 24.7 1E+02 0.0022 27.5 3.8 55 99-155 96-154 (154)
49 PF02847 MA3: MA3 domain; Int 24.2 2.4E+02 0.0051 22.1 5.6 9 88-96 59-67 (113)
50 PF08467 Luteo_P1-P2: Luteovir 23.4 1.1E+02 0.0024 30.5 4.1 42 125-166 138-179 (361)
51 cd03814 GT1_like_2 This family 22.9 1E+02 0.0022 27.3 3.7 30 130-159 318-347 (364)
52 PF05365 UCR_UQCRX_QCR9: Ubiqu 22.3 1.1E+02 0.0023 22.8 2.9 25 59-84 28-52 (55)
53 KOG2713 Mitochondrial tryptoph 22.1 89 0.0019 31.0 3.2 71 47-117 271-344 (347)
54 PF12717 Cnd1: non-SMC mitotic 21.5 5.3E+02 0.012 22.3 7.9 55 48-104 9-64 (178)
55 PF15145 DUF4577: Domain of un 21.5 1E+02 0.0022 26.6 3.0 32 44-75 88-123 (128)
56 PF07064 RIC1: RIC1; InterPro 21.5 4.6E+02 0.01 24.8 7.8 72 27-101 117-198 (258)
57 PF03564 DUF1759: Protein of u 21.2 1.6E+02 0.0035 24.2 4.3 46 24-76 24-71 (145)
58 cd03795 GT1_like_4 This family 20.5 1.5E+02 0.0034 26.5 4.3 29 130-158 318-346 (357)
59 KOG2049 Translational represso 20.4 9.6E+02 0.021 25.5 10.5 99 40-145 301-410 (536)
60 cd03821 GT1_Bme6_like This fam 20.2 1.2E+02 0.0026 26.7 3.5 31 132-162 333-364 (375)
61 PF13524 Glyco_trans_1_2: Glyc 20.1 1.6E+02 0.0036 21.9 3.8 29 130-158 48-76 (92)
No 1
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-57 Score=433.64 Aligned_cols=169 Identities=47% Similarity=0.826 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 022423 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA 87 (297)
Q Consensus 8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~ 87 (297)
.+.++.++|+|+|+|++|+++|++|++||+||||||++++|+|||++||++.+|.+||.||||||++.|++||||||||+
T Consensus 2 ~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLt 81 (336)
T KOG2056|consen 2 TMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALT 81 (336)
T ss_pred cccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccC
Q 022423 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167 (297)
Q Consensus 88 LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~sS 167 (297)
||||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||.+|+++|.||.|++.
T Consensus 82 lleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~~ 161 (336)
T KOG2056|consen 82 LLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFGP 161 (336)
T ss_pred HHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcCCCC
Q 022423 168 TGITYKSGS 176 (297)
Q Consensus 168 ~~~~~~s~s 176 (297)
.+..+.+++
T Consensus 162 ~~~~~~~~~ 170 (336)
T KOG2056|consen 162 GSISNKSNS 170 (336)
T ss_pred Ccccccccc
Confidence 766553333
No 2
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=100.00 E-value=1.1e-50 Score=339.94 Aligned_cols=123 Identities=51% Similarity=0.940 Sum_probs=121.1
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 27 e~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
|+|++|+||||||||||++++|++||++||++++|.+||++||+||.+++++||||||||+||||||+|||++||+|+|+
T Consensus 1 ~~e~~vreATs~d~wGp~~~~m~eIa~~t~~~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 80 (123)
T cd03571 1 EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARE 80 (123)
T ss_pred CHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHH
Q 022423 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQ 149 (297)
Q Consensus 107 ~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~ 149 (297)
|+++|+.|++|+|+|++|+|+|++||+||++|++||+|+++|+
T Consensus 81 ~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~D~~~L~ 123 (123)
T cd03571 81 NLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDERLR 123 (123)
T ss_pred hHHHHHhhccceeeCCCCCchhHHHHHHHHHHHHHhCCHhhcC
Confidence 9999999999999999999999999999999999999999985
No 3
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=378.91 Aligned_cols=209 Identities=33% Similarity=0.667 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC--chhHHHHHHHHHHHhhcCC-CchHHHHHH
Q 022423 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK--FSECQMVMNVLWTRLAETG-KDWRYVYKA 85 (297)
Q Consensus 9 q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~--~~~~~~Im~vLwKRL~d~g-k~WR~IyKa 85 (297)
+.||+|..+++++||||+++|.+||||||.|||||++.+|.|||++||. +++|+++|.+||.|+.... +.||+|||+
T Consensus 5 ~kVRel~dkandaiMNY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry~EdFpelmnmL~qRMLedNK~~WRRVYKS 84 (499)
T KOG2057|consen 5 EKVRELTDKANDAIMNYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRYMEDFPELMNMLFQRMLEDNKDAWRRVYKS 84 (499)
T ss_pred HHHHHHHHHHhHHHhcchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999 8999999999999998654 789999999
Q ss_pred HHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHh-hccccc
Q 022423 86 LAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN-REKYFG 164 (297)
Q Consensus 86 L~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~-R~Ki~G 164 (297)
|+||.|||+|||||||.++|+|+|.|+.|++|.|+|+.|+|||+|||+|.++|+++.+|+++|++||+||++. ++||.|
T Consensus 85 LiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDDd~Lq~ERkKAkkddKdKY~G 164 (499)
T KOG2057|consen 85 LILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDDDLLQAERKKAKKDDKDKYRG 164 (499)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHHHHHHHHHHhccHHHHHHHHHhhccccchhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccCCCCCcCCCCCCCCCCCCCCCCCCCCC-CCCCccccCCCCC--CCCcC----------CCCCCccccccCcccCC
Q 022423 165 LSSTGITYKSGSASFGTGGYRSSDRYGGS-GDNFRESYKDRDP--YGEEK----------TGNDTFGKSRRGAASEN 228 (297)
Q Consensus 165 ~sS~~~~~~s~s~~~g~~~~~~~~~ygg~-~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~ 228 (297)
|.+..+. +|.++.+|... .+-+..-|.-+++ +-.++ ...++++++|+-.+++.
T Consensus 165 ~~qd~mg-----------gf~~SekydpepkS~wDeeWDKe~Saf~fSdklgel~DkigSk~ddn~S~fr~kdRedS 230 (499)
T KOG2057|consen 165 FDQDDMG-----------GFGSSEKYDPEPKSGWDEEWDKEDSAFFFSDKLGELDDKIGSKEDDNFSFFRNKDREDS 230 (499)
T ss_pred cchhhcc-----------ccccccccCCCccccccccccccccccchhhhhhhhhhhhcCeeccchhhhhccCCCCC
Confidence 9876642 34455666644 2334444555554 11111 01578888888888766
No 4
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=100.00 E-value=3.1e-44 Score=297.31 Aligned_cols=124 Identities=52% Similarity=0.931 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHHHHcCCHhHHHH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL-~d~gk~WR~IyKaL~LLEYLLkNGservV~e 103 (297)
|||+|++|+||||+|||||++++|+|||++||++.+|..||++||+|| ...+++||++||||+||+|||+||+++||.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred HHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHH
Q 022423 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKI 148 (297)
Q Consensus 104 ~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L 148 (297)
+|+|++.|+.|++|+|+|++|+|+|.+||++|++|++||.|+++|
T Consensus 81 ~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~~L 125 (125)
T PF01417_consen 81 LRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDERL 125 (125)
T ss_dssp HHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999999999999987
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=100.00 E-value=1.5e-35 Score=245.71 Aligned_cols=126 Identities=39% Similarity=0.708 Sum_probs=123.0
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
+++|++|++|||+|+|||+++.|.+|+++||++ ..|..||.+||+||.+.+ +||+|||||+||+|||+||+++|+.++
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~-~w~~v~KsL~llh~ll~~G~~~~~~~~ 79 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTK-NWRVVYKALILLHYLLRNGSPRVILEA 79 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 589999999999999999999999999999999 899999999999999987 999999999999999999999999999
Q ss_pred HhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHH
Q 022423 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (297)
Q Consensus 105 r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER 152 (297)
+.|...|..|.+|+|+|++|.|+|.+||++|+.|.++|.|.+.|++||
T Consensus 80 ~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~er 127 (127)
T smart00273 80 LRNRNRILNLSDFQDIDSRGKDQGANIRTYAKYLLERLEDDRRLKEER 127 (127)
T ss_pred HHhhHHHhhHhhCeecCCCCeeCcHHHHHHHHHHHHHHcCHHHHhccC
Confidence 999999999999999999999999999999999999999999999987
No 6
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=99.94 E-value=6.8e-27 Score=196.35 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=107.5
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHH-HHHHHHHHHHHHcCCHhHHHHHHhh
Q 022423 30 QKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYV-YKALAVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 30 ~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~I-yKaL~LLEYLLkNGservV~e~r~~ 107 (297)
.+|+.||++++||||+.+|.|||++||+. ..|.+||++|.+||++++ +|| +|||+||.||+.+|++.|+.|++.|
T Consensus 4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~---~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 4 SLLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSS---PHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 47899999999999999999999999996 789999999999999866 999 9999999999999999999999999
Q ss_pred hhhhhcccceEE-eCC-CCCchhhHHHHHHHHHHHhhcCh
Q 022423 108 TFQISSLSSFEY-VEP-SGKDMGINVRKKAENIVALLNNK 145 (297)
Q Consensus 108 i~~I~~L~~Fqy-~d~-~GkD~G~nVR~KAk~I~~LL~D~ 145 (297)
+++|++|++|++ +|+ .|.+.|..||++|+++++||-..
T Consensus 81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhcc
Confidence 999999999999 687 89999999999999999999654
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.90 E-value=2.1e-23 Score=169.64 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=103.8
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhh
Q 022423 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 29 E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~ 107 (297)
|++|.+||++++|||+..+|.+|++++++. ..+..||..||+||.++ +|+++||||+|||||++||+++|..+++.+
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~ 79 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCGERFHQEVASN 79 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Confidence 789999999999999999999999999887 56789999999999875 999999999999999999999999999999
Q ss_pred hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 022423 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 108 i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D 144 (297)
.+.++.+ .|.|.+..|.+++.+||+|+.+|+++..|
T Consensus 80 ~~~~~l~-~~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 80 DFAVELL-KFDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred HHHHHHH-HhhccccccCCCChHHHHHHHHHHHHHhC
Confidence 9888655 56887778999999999999999998754
No 8
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.80 E-value=3.5e-19 Score=146.43 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=103.3
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 28 ~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
+|+.|..||++++|+|..+.|.+|..+|++ ...+..||..|++||.+ ++|+++||||+||.+||++|++.|+.+++.
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~--~~w~v~~K~LillH~llr~G~~~~~~~~~~ 78 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLD--RNWVVVLKALILLHRLLREGHPSFLQELLS 78 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--CcHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 368899999999999999999999999999 78999999999999998 899999999999999999999999999999
Q ss_pred hhhhhhcccceEEeCC-CCCchhhHHHHHHHHHHHhh
Q 022423 107 HTFQISSLSSFEYVEP-SGKDMGINVRKKAENIVALL 142 (297)
Q Consensus 107 ~i~~I~~L~~Fqy~d~-~GkD~G~nVR~KAk~I~~LL 142 (297)
|...| .|..|.+.+. .|.|+|..||..|+-|.+.|
T Consensus 79 ~~~~l-~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl 114 (117)
T cd03564 79 RRGWL-NLSNFLDKSSSLGYGYSAFIRAYARYLDERL 114 (117)
T ss_pred ccCee-eccccccCCCCCchhhhHHHHHHHHHHHHHH
Confidence 97666 6778988764 68899999999999988765
No 9
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=98.75 E-value=3.8e-08 Score=90.69 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=83.2
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r 105 (297)
+++|+-|..||+.+.-+|..+.+..|..+|++......++..|.+||.. .++|..++|+|.||..||+-|++.++.++.
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~-~~~w~V~~K~Lil~H~llr~G~~~~~~~~~ 80 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPL-TRNWIVALKALILLHRLLRDGHPSFLQELL 80 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTS-S-SHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHccc-cccHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4688999999999999999999999999999966778899999999977 358999999999999999999999999998
Q ss_pred hhhhhhhcccceEEeC---CCCCchhhHHHHHHHHHH
Q 022423 106 EHTFQISSLSSFEYVE---PSGKDMGINVRKKAENIV 139 (297)
Q Consensus 106 ~~i~~I~~L~~Fqy~d---~~GkD~G~nVR~KAk~I~ 139 (297)
.+...+..+..+.-.| ..+-++|.-||.=|+-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~ 117 (280)
T PF07651_consen 81 RYNRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLD 117 (280)
T ss_dssp HTT-----TT---T---SSCHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhhccccccccCCccccchhHHHHHHHHHHH
Confidence 8766666655553312 245688888888876554
No 10
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3.9e-06 Score=85.20 Aligned_cols=111 Identities=26% Similarity=0.380 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHH
Q 022423 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (297)
Q Consensus 24 n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~ 102 (297)
.++.+++.|..||+.+..+|..+.+..|-.+|-.. ...+-++..|-.||... ++|-.+||||+||.+||++|.+.+..
T Consensus 20 ~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~T-rnW~VAlKsLIliH~ll~~G~~~f~~ 98 (491)
T KOG0251|consen 20 AGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKT-RNWTVALKALILIHRLLKEGDPSFEQ 98 (491)
T ss_pred hhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCC-cceeehHHHHHHHHHHHhcCcHHHHH
Confidence 57899999999999999999999999999999665 67788999999999985 59999999999999999999999998
Q ss_pred HHHhhhhhhhcccceEEeCC---CCCchhhHHHHHHHHH
Q 022423 103 DIIEHTFQISSLSSFEYVEP---SGKDMGINVRKKAENI 138 (297)
Q Consensus 103 e~r~~i~~I~~L~~Fqy~d~---~GkD~G~nVR~KAk~I 138 (297)
++...-..+ .|.+| .|. .+-|+..-||-=|.-|
T Consensus 99 ~l~~~~~~l-~lS~F--~d~s~~~~~d~safVR~Ya~YL 134 (491)
T KOG0251|consen 99 ELLSRNLIL-NLSDF--RDKSSSLTWDMSAFVRTYALYL 134 (491)
T ss_pred HHHhccccc-chhhh--hcccccccchhhHHHHHHHHHH
Confidence 887766333 34555 333 3568888999555444
No 11
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=98.14 E-value=9.1e-06 Score=68.87 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e 103 (297)
.++++.+|..||+...-.|.-...-+|++.--. .....+++..|.|||.. .+-..++-||+|||+|++||.+.|-.+
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~--~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKH--GNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 588999999999988888888888888888544 45678899999999999 788999999999999999999988887
Q ss_pred HHhh--hhhhhcccceEEeCCCCCchhhH--HHHHHHHHHHhh
Q 022423 104 IIEH--TFQISSLSSFEYVEPSGKDMGIN--VRKKAENIVALL 142 (297)
Q Consensus 104 ~r~~--i~~I~~L~~Fqy~d~~GkD~G~n--VR~KAk~I~~LL 142 (297)
+-.. +..|..|-.-. ..+.. ||+|+.+++.-.
T Consensus 81 v~~~~fl~~l~~l~~~~-------~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSK-------KTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HTSHHHHHHHHHHHHHT-------TTHHHSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHccC-------CCCchhHHHHHHHHHHHHH
Confidence 6443 22332222211 12223 999998887644
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=97.70 E-value=0.0004 Score=59.91 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=79.5
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhh
Q 022423 29 EQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 29 E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~ 107 (297)
|.+|..||+...-.|.-..+-+|+..--. ...-...|..|.|||.. ++-+.++.||+|||-|++|+...|-.++-..
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~evask 79 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNH--KDPNVQLRALTLLDACAENCGKRFHQEVASR 79 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH
Confidence 67899999977667777788888887544 34566799999999986 5788999999999999999999888877543
Q ss_pred hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 108 i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
..+..|... +.+. .-..|++|+.+++.-..
T Consensus 80 -~Fl~eL~kl--~~~~---~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 80 -DFTQELKKL--INDR---VHPTVKEKLREVVKQWA 109 (144)
T ss_pred -HHHHHHHHH--hccc---CCHHHHHHHHHHHHHHH
Confidence 222333322 1211 44589999988887653
No 13
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=97.70 E-value=0.0004 Score=58.69 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhh
Q 022423 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 29 E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~ 107 (297)
+.+|..||+...-.|.-..+-+|+..-... ..-.+.+..|.|||.. ++-..++.||+|||.|++|+...|..++-..
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~--~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~ 79 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNN--KNPHVALLALTLLDACVKNCGSKFHLEVASK 79 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH
Confidence 678999999877778888888888886443 3467899999999996 6788999999999999999988888777544
Q ss_pred hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 022423 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (297)
Q Consensus 108 i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL 142 (297)
-+ +..|... +.+ +.....||+|+..++.-.
T Consensus 80 ~f-l~~L~~l--~~~--~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 80 EF-LNELVKL--IKP--KYPLPLVKKRILELIQEW 109 (133)
T ss_pred HH-HHHHHHH--HcC--CCCcHHHHHHHHHHHHHH
Confidence 33 2233321 111 111123999988887644
No 14
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=97.68 E-value=0.00052 Score=58.91 Aligned_cols=112 Identities=19% Similarity=0.190 Sum_probs=77.4
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 022423 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (297)
Q Consensus 27 e~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r 105 (297)
|++.+|..||+...-.|.-...-+|++.-... ..-...|..|.|||. ++++-+.++-||+|||-|++|+-.+|-.++-
T Consensus 1 ~~~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~-~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia 79 (141)
T cd03565 1 PVGQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLN-GNKNHKEVMLTLTVLETCVKNCGHRFHVLVA 79 (141)
T ss_pred CHhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 45789999999766666666777777775443 345679999999996 4568889999999999999999999887774
Q ss_pred hhhhhhhc-ccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 106 EHTFQISS-LSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 106 ~~i~~I~~-L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
..-+ +.. |... +.+++ +.-..|++|+.+|+.-..
T Consensus 80 sk~F-l~e~L~~~--i~~~~-~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 KKDF-IKDVLVKL--INPKN-NPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHh-hhHHHHHH--HcccC-CCcHHHHHHHHHHHHHHH
Confidence 4322 111 2221 11111 223468888877776543
No 15
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=97.65 E-value=0.00079 Score=57.88 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e 103 (297)
.++.+.+|.+||+...-.|.-..+-+|++.--. ...-.+.+..|.|||.. ++-+.++-||.|||.|++|+...|-.+
T Consensus 2 ~~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 2 VSEFDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLS--KNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred cchHHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 478899999999977677777787778777543 23456799999999988 678999999999999999988877776
Q ss_pred HHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 104 IIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 104 ~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
+-..-+ +..|... +.+ ..-..|++|+-.++.-..
T Consensus 80 vas~~f-l~~l~~l--~~~---~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 80 VASREF-MDELKDL--IKT---TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HhhHHH-HHHHHHH--Hcc---cCCHHHHHHHHHHHHHHH
Confidence 654322 2222221 111 234588888888876543
No 16
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=97.63 E-value=0.00063 Score=57.29 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=80.5
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhh
Q 022423 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 29 E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~ 107 (297)
+.+|.+||+...-.|.-..+.+|+..-... ..-.+.+..|.|||... +-...+-||.|||.|++||...|..++-..
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~ 79 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADK 79 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhH
Confidence 467899999866677777888888876443 45678999999999973 788999999999999999999888877664
Q ss_pred hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 108 TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 108 i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
-++.+ |..+- ... ...-..||+|+.+++.-..
T Consensus 80 ~fl~~-l~~l~--~~~-~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 80 EFLLE-LVKIA--KNS-PKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHH-HHHHh--CCC-CCCCHHHHHHHHHHHHHHH
Confidence 44333 33321 111 1245689999988876553
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=97.44 E-value=0.0022 Score=55.26 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 022423 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDII 105 (297)
Q Consensus 27 e~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r 105 (297)
++|.+|..||+.-.-.|.-..+-+||..-... ..-...+..|.|||.. ++-+.++-||+|||.|++|+-.+|-.++-
T Consensus 1 ~~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~--~n~~v~l~AL~LLe~~vkNCG~~fh~eva 78 (139)
T cd03567 1 SLEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQS--PQEKEALQALTVLEACMKNCGERFHSEVG 78 (139)
T ss_pred CHHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 36889999999766677777888888775443 3456799999999985 46778999999999999999998877775
Q ss_pred hhhh---hhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 106 EHTF---QISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 106 ~~i~---~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
..-+ +++-+.. .| .|...-..|++|+..|+.-..
T Consensus 79 s~~Fl~el~kl~~~-k~---~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 79 KFRFLNELIKLVSP-KY---LGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred hHHHHHHHHHHhcc-cc---CCCCCCHHHHHHHHHHHHHHH
Confidence 4322 2222211 22 133445799999988887654
No 18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.011 Score=60.28 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=80.1
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 28 ~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
+..+|..||+..--+|.=.+--|||+.--. .....+++..|.|||..+.. +..|=||+|||=|++|+-+.|=..+-+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s--~vq~lALtlLE~cvkNCG~~fh~~Va~ 79 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNS--KVQLLALTLLETCVKNCGYSFHLQVAS 79 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCc--HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 457899999977777777777888888643 23456899999999998654 788889999999999998877655544
Q ss_pred hhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 022423 107 HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (297)
Q Consensus 107 ~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL 142 (297)
--++=+.++.|++. + .-..||+|+-.+|+.=
T Consensus 80 k~fL~emVk~~k~~---~--~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 80 KEFLNEMVKRPKNK---P--RDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccccC---C--cchhHHHHHHHHHHHH
Confidence 33333345566553 2 5579999998888753
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=93.80 E-value=0.54 Score=47.51 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHhhC----CCCCCCCHHHHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCH
Q 022423 24 KVPEIEQKVLDATD----NEPWGPHGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE 98 (297)
Q Consensus 24 n~se~E~kVrEATs----nDpWGPt~s~M~EIA~~T-~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGse 98 (297)
..+++|..|..||+ +|+|+ .+-+||..- -+.+--...|+.|.|||+.. .--.|+-||+||+=|+.|+-.
T Consensus 5 ~~n~~e~~v~KAT~e~nT~enW~----~IlDvCD~v~~~~~~~kd~lk~i~KRln~~--dphV~L~AlTLlda~~~NCg~ 78 (462)
T KOG2199|consen 5 SANPFEQDVEKATDEKNTSENWS----LILDVCDKVGSDPDGGKDCLKAIMKRLNHK--DPHVVLQALTLLDACVANCGK 78 (462)
T ss_pred CcchHHHHHHHhcCcccccccHH----HHHHHHHhhcCCCcccHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHhcch
Confidence 35789999999999 58886 455566553 44455567899999999984 456899999999999999999
Q ss_pred hHHHHHHhh
Q 022423 99 RAVDDIIEH 107 (297)
Q Consensus 99 rvV~e~r~~ 107 (297)
+|..++...
T Consensus 79 ~~r~EVsSr 87 (462)
T KOG2199|consen 79 RFRLEVSSR 87 (462)
T ss_pred HHHHHHhhh
Confidence 998887543
No 20
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.72 E-value=8.6 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=26.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhh
Q 022423 76 GKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF 109 (297)
Q Consensus 76 gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~ 109 (297)
+.+|--+| ||++||||++||-++|=+++-...+
T Consensus 57 Pqe~EAl~-altvLe~cmkncGekfH~evgkfrF 89 (594)
T KOG1086|consen 57 PQEWEALQ-ALTVLEYCMKNCGEKFHEEVGKFRF 89 (594)
T ss_pred hhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57887665 8999999999999988877655443
No 21
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=76.84 E-value=14 Score=29.64 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 27 EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 27 e~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
+.+..+++-|.+...+|.-..|..+|.. +......|++.|.++|...+. .+-+-.|-|++=+++|.-......+..
T Consensus 3 ~~~~~l~~L~~~~~S~~~I~~lt~~a~~--~~~~a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~ 78 (114)
T cd03562 3 DYNALLEKLTFNKNSQPSIQTLTKLAIE--NRKHAKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSE 78 (114)
T ss_pred cHHHHHHHHHcCcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHH
Confidence 3445566667776555555555555544 346778899999999987544 677789999999999977666666555
Q ss_pred hhh-hhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 022423 107 HTF-QISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 107 ~i~-~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D 144 (297)
.+. ++. .-|+ .....+|+|..+|++.-++
T Consensus 79 ~~~~~f~--~~~~-------~~~~~~r~kl~rl~~iW~~ 108 (114)
T cd03562 79 FLVPLFL--DAYE-------KVDEKTRKKLERLLNIWEE 108 (114)
T ss_pred HHHHHHH--HHHH-------hCCHHHHHHHHHHHHHccC
Confidence 432 221 1122 1234788888888876543
No 22
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=75.33 E-value=7.1 Score=43.10 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhh
Q 022423 30 QKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF 109 (297)
Q Consensus 30 ~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~ 109 (297)
.-|+.|++.+...|-.++.--|.-.|++...- .|+=...+|+.- ..+-...+|.+.||.=||+-|.+.++.+.+.+..
T Consensus 9 ~av~KAis~~Et~~K~KH~Rt~I~gTh~eksa-~~FWt~ik~~PL-~~~~VltwKfchllHKvLreGHpsal~es~r~r~ 86 (980)
T KOG0980|consen 9 EAVQKAISKDETPPKRKHVRTIIVGTHDEKSS-KIFWTTIKRQPL-ENHEVLTWKFCHLLHKVLREGHPSALEESQRYKK 86 (980)
T ss_pred HHHHHHhccccCCCchhhhhheeeeecccccc-hhHHHHhhcccc-ccchHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 56889999999999999999999999886543 222222234332 1455677899999999999999999999999999
Q ss_pred hhhcccceEEeCCCCCchhhHHHHHHHHHHH
Q 022423 110 QISSLSSFEYVEPSGKDMGINVRKKAENIVA 140 (297)
Q Consensus 110 ~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~ 140 (297)
-|++|..+--. . ..+.|.-||.=++-|..
T Consensus 87 ~i~~l~r~w~~-l-s~~Yg~lI~~Y~klL~~ 115 (980)
T KOG0980|consen 87 WITQLGRMWGH-L-SDGYGPLIRAYVKLLHD 115 (980)
T ss_pred HHHHHHHHhcc-c-cccchHHHHHHHHHHHH
Confidence 99998876321 1 15788889888776654
No 23
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=67.11 E-value=23 Score=28.56 Aligned_cols=95 Identities=5% Similarity=0.088 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHcC-CchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhh-hhhcccceEEe
Q 022423 43 PHGTALAEIAQATK-KFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTF-QISSLSSFEYV 120 (297)
Q Consensus 43 Pt~s~M~EIA~~T~-~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~-~I~~L~~Fqy~ 120 (297)
++...+..++...- +.+....|+++|.+.+...+.+ +-+-.|-|++-+|+|+.......++.... .|.. -|..+
T Consensus 11 ~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~~~~--~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~--~~~~~ 86 (121)
T smart00582 11 NSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPPP--RKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD--ALRDV 86 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHH
Confidence 56666666666664 3456678999999999875544 44568889999999987654444433222 1111 12111
Q ss_pred CCCCCchhhHHHHHHHHHHHhhcC
Q 022423 121 EPSGKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 121 d~~GkD~G~nVR~KAk~I~~LL~D 144 (297)
..... ..+|+|..+|+++=.+
T Consensus 87 ~~~~~---~~~~~ki~kll~iW~~ 107 (121)
T smart00582 87 LGAAN---DETKKKIRRLLNIWEE 107 (121)
T ss_pred HHhCC---HHHHHHHHHHHHHHhc
Confidence 11111 5789999999998665
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=63.29 E-value=37 Score=37.62 Aligned_cols=65 Identities=14% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHhhcCC--CchHHHHHHHHHH--HHHHHcCCHhHHHHHHhhhhh
Q 022423 46 TALAEIAQATKKFSECQMVMNVLWTRLAETG--KDWRYVYKALAVI--EYLISHGSERAVDDIIEHTFQ 110 (297)
Q Consensus 46 s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~g--k~WR~IyKaL~LL--EYLLkNGservV~e~r~~i~~ 110 (297)
.++.-+-.-+++++++.+++++||.-+.+.+ -.+..|+.-|+|+ +|-++----.+|++|...|.+
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvl 437 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVL 437 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4455555667888999999999999998876 4566666666655 344444444455555444433
No 25
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=51.21 E-value=74 Score=25.67 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHH
Q 022423 59 SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENI 138 (297)
Q Consensus 59 ~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I 138 (297)
..+..|+..|.+.|.| .+||.=|=|.--|--|++...+.++..+-+-...|-.| . .|.-.+||.-|+-|
T Consensus 23 ~~l~~Il~pVL~~~~D--~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-----~----~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDD--QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-----S----ADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----cCCchhHHHHHHHH
Confidence 4567799999888888 58999899999998999988777766444333222221 1 24556899999999
Q ss_pred HHhhcC
Q 022423 139 VALLNN 144 (297)
Q Consensus 139 ~~LL~D 144 (297)
-.||.|
T Consensus 92 d~llkd 97 (97)
T PF12755_consen 92 DRLLKD 97 (97)
T ss_pred HHHhcC
Confidence 999976
No 26
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.87 E-value=8.3 Score=42.01 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=33.4
Q ss_pred CHHHHHHH--HhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCc
Q 022423 26 PEIEQKVL--DATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKD 78 (297)
Q Consensus 26 se~E~kVr--EATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~ 78 (297)
++.|..|. |+|+.+.|||+- +.+|+...-..+|+-|..|+.+++++
T Consensus 16 ~~~eril~~~estDtd~~gP~l-------Rs~~d~~~~~~~~e~Le~~ir~~d~E 63 (800)
T KOG2176|consen 16 EEHERILLEIESTDTDDWGPTL-------RSVYDGNQHKPVMEKLENRIRNHDKE 63 (800)
T ss_pred HHHHHHHHHHhccchhhhhhHH-------HHHHccCCcchHHHHHHHHHHhhHHH
Confidence 45555554 899999999984 45566666677888888888776644
No 27
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.67 E-value=37 Score=27.43 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=43.4
Q ss_pred ccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 022423 22 VLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLIS 94 (297)
Q Consensus 22 v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~--~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLk 94 (297)
+...+.-+.+||.+- -+.|..|++.+... ..|.+|+..|++.+.|...+ |-.+-.+|+.|||
T Consensus 33 L~~~~D~d~rVRy~A--------cEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 33 LKCFDDQDSRVRYYA--------CEALYNISKVARGEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLLK 96 (97)
T ss_pred HHHcCCCcHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhc
Confidence 344455556666542 34566666665443 46899999999999998765 5667789998886
No 28
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=48.08 E-value=25 Score=22.12 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCHhHHHHHHh
Q 022423 87 AVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 87 ~LLEYLLkNGservV~e~r~ 106 (297)
.|++||+.+|-......|+.
T Consensus 6 lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 6 LIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHh
Confidence 58999999999887776653
No 29
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=46.88 E-value=31 Score=28.15 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHHHHhhc--C-----------CCchHHHHHHHH
Q 022423 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAE--T-----------GKDWRYVYKALA 87 (297)
Q Consensus 43 Pt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d--~-----------gk~WR~IyKaL~ 87 (297)
++..+|..|-..+ .++....+.||++|.. . +..||.+|-.+.
T Consensus 19 ~~~~QL~~iE~~n---p~l~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 19 CSPEQLRRIEDNN---PHLIEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLK 73 (109)
T ss_pred CCHHHHHHHHHhC---CCcchhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHH
Confidence 4677888887766 5566778899999863 2 258999987543
No 30
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=45.15 E-value=25 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCHhHHHHHHhh
Q 022423 87 AVIEYLISHGSERAVDDIIEH 107 (297)
Q Consensus 87 ~LLEYLLkNGservV~e~r~~ 107 (297)
.|++||+.+|-......++.-
T Consensus 9 lI~~yL~~~g~~~ta~~l~~e 29 (34)
T smart00667 9 LILEYLLRNGYEETAETLQKE 29 (34)
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 599999999998877666543
No 31
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.09 E-value=1.6e+02 Score=34.22 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=73.1
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhcCC-------CchHHHHHHHHHHHHHHHcCCHhHH
Q 022423 31 KVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETG-------KDWRYVYKALAVIEYLISHGSERAV 101 (297)
Q Consensus 31 kVrEATsnDpWGPt~s~M~EIA~~T~~~--~~~~~Im~vLwKRL~d~g-------k~WR~IyKaL~LLEYLLkNGservV 101 (297)
..+.|-+.+.|+|...+-.+|-...|.- ++-..|-.+|-.-|.... +.|.++|..|-++.+=.-+-=-.+.
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 5667777888888887777887777665 333445555666666543 4455555444444333322222333
Q ss_pred HHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHH
Q 022423 102 DDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKA 155 (297)
Q Consensus 102 ~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kA 155 (297)
..+++.+...=++..+++.|. .-..|-.+...|.+.|.|+-....-+.++
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~----~~k~i~~~i~~i~~~lpD~~s~~~~~~~f 538 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDD----SMKKIFSKIVKISENLPDPSSRSYDSMKF 538 (1266)
T ss_pred HHHHHHHHHHhccccCCCccH----hHHHHHHHHHHHHHhcCCchhhhhHHHHH
Confidence 444444443226677776652 56678888888888898886666655555
No 32
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=35.73 E-value=1.5e+02 Score=33.44 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=47.8
Q ss_pred HHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHH-----------HHHhhcCCCchHHHHH
Q 022423 16 REVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVL-----------WTRLAETGKDWRYVYK 84 (297)
Q Consensus 16 r~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vL-----------wKRL~d~gk~WR~IyK 84 (297)
.++.+.+.+.++.|+...+--. --=+|+-++..++...-|..++-++|++.| .|||..++++||.+..
T Consensus 578 e~i~d~~~~~~e~Eka~~~Lp~-glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~Kd~EWR~~kR 656 (1163)
T COG5602 578 EQIIDKIKDMEESEKANKTLPG-GLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMKDEEWRSCKR 656 (1163)
T ss_pred HHHHHHhhcchhhHHHHhcCCC-cCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHhhHHHHHHHH
Confidence 3445556666666654432211 112678889999999999999888888755 5899888888886654
Q ss_pred HH
Q 022423 85 AL 86 (297)
Q Consensus 85 aL 86 (297)
.+
T Consensus 657 ew 658 (1163)
T COG5602 657 EW 658 (1163)
T ss_pred HH
Confidence 33
No 33
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=34.42 E-value=1.3e+02 Score=33.95 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhh------hh--cc
Q 022423 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQ------IS--SL 114 (297)
Q Consensus 43 Pt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~------I~--~L 114 (297)
+.-.+|.+|...---++-+..=++.||.+=.+- -+++=++|..|..-++=+..+-|.++.--+.. -. +|
T Consensus 541 ~~~kqLk~i~~~d~l~el~e~ekd~lW~~R~~~---~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleL 617 (1076)
T KOG0904|consen 541 KLRKQLKEILARDPLSELTEQEKDLLWHLRHEI---LKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALEL 617 (1076)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHH---HHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 345677777664333455666677888432221 12334678888777888887777665544331 11 56
Q ss_pred cceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHH
Q 022423 115 SSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (297)
Q Consensus 115 ~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER 152 (297)
-+|.|.|+ +||.-|-+.++.|+|++.++=-=
T Consensus 618 Ld~nypD~-------~VR~fAV~~L~~Lsdd~l~~YLL 648 (1076)
T KOG0904|consen 618 LDCNYPDP-------NVRAFAVRCLEQLSDDDLLQYLL 648 (1076)
T ss_pred hcCCCCcH-------HHHHHHHHHHHhcChhHHHHHHH
Confidence 78999885 89999999999999999876443
No 34
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=34.19 E-value=52 Score=34.04 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcCC---CchHHHHH-----HHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCC
Q 022423 62 QMVMNVLWTRLAETG---KDWRYVYK-----ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEP 122 (297)
Q Consensus 62 ~~Im~vLwKRL~d~g---k~WR~IyK-----aL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~ 122 (297)
.++.+.+.-.|...+ +.||.+|+ ++.||.||+.+=.+.-.. ++. .+-++|+.|+..++
T Consensus 167 ~E~~~~li~CLt~d~~c~~~Wr~lY~knl~~S~llL~~l~~~W~~~s~K-L~k--~l~~Tl~sfr~~Ne 232 (469)
T PF10151_consen 167 KELISILIWCLTQDPDCFKVWRQLYKKNLKQSVLLLKHLDDEWKESSKK-LSK--SLKETLKSFRLKNE 232 (469)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhhHH-HHH--HHHHHHHHHHHhHH
Confidence 456677777776654 78998887 799999999875433222 222 34556777876543
No 35
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.73 E-value=1.4e+02 Score=29.90 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=55.7
Q ss_pred hccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCch----hHHHH--HHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Q 022423 21 KVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS----ECQMV--MNVLWTRLAETGKDWRYVYKALAVIEYLIS 94 (297)
Q Consensus 21 ~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~----~~~~I--m~vLwKRL~d~gk~WR~IyKaL~LLEYLLk 94 (297)
.|+...-.+.++.-.++++|-...++.|..|+-+-.+.. .|..| ..+|..-|..++..-|-.-|++.||.||+.
T Consensus 161 ~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 161 QVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 444444444555566778888888899999988876642 33332 467777788888899999999999999997
Q ss_pred cCC
Q 022423 95 HGS 97 (297)
Q Consensus 95 NGs 97 (297)
--.
T Consensus 241 ~~~ 243 (342)
T KOG2160|consen 241 EDK 243 (342)
T ss_pred hhh
Confidence 644
No 36
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=29.89 E-value=66 Score=29.44 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 022423 130 NVRKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (297)
Q Consensus 130 nVR~KAk~I~~LL~D~e~L~eER~kAkk~-R~Ki 162 (297)
++.+-|+.|..||.|++.+.+.++++++. .++|
T Consensus 322 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~f 355 (371)
T cd04962 322 DVEAMAEYALSLLEDDELWQEFSRAARNRAAERF 355 (371)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 56777899999999999998888888875 5443
No 37
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.06 E-value=2.4e+02 Score=22.42 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHcC-C-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHh
Q 022423 44 HGTALAEIAQATK-K-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSER 99 (297)
Q Consensus 44 t~s~M~EIA~~T~-~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGser 99 (297)
..++|..|++.-- . ..-.++|+..+.+-|.+..+.+-..|=||.-|..| |++-
T Consensus 26 AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l---G~~~ 80 (92)
T PF07571_consen 26 AASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL---GPEA 80 (92)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH---HHHH
Confidence 3567888887621 1 23467899999999999999999999999999998 6643
No 38
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.90 E-value=59 Score=26.18 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 022423 45 GTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA 87 (297)
Q Consensus 45 ~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~ 87 (297)
+...++|+.+- .++|.+||+++- +..++-.-|+..|||.
T Consensus 33 gDDvqQL~~~~--e~eF~eim~lvG--M~sKPLHVrRlqKAL~ 71 (82)
T PF04904_consen 33 GDDVQQLCEAG--EEEFLEIMALVG--MASKPLHVRRLQKALQ 71 (82)
T ss_pred ChhHHHHHhcC--hHHHHHHHHHhC--ccCccHHHHHHHHHHH
Confidence 34455566553 278999999986 7778889999999875
No 39
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=1.6e+02 Score=31.73 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
|..+.++..||+.+..-+.-...-||....... ..+..-|..|.+|++ ..+-+...=+|.|+++.++||---|..++
T Consensus 7 ~~~~~l~~~at~~~~~~~~~e~~~e~~d~ir~~~~~~k~slr~~~~~i~--h~np~~~~~~~~~~d~cvkn~G~gv~~ei 84 (634)
T KOG1818|consen 7 SAFKRLIEKATSETLGSGDWEAILEISDMIRSGGVPPKPSLRGIKKRID--HENPNVQLFTLKLTDHCVKNCGHGVHCEI 84 (634)
T ss_pred hHHHhhhhhhhhhhhcCcchhhhhhHHHHHHhcCCCCchhHHHHHHHHh--ccCCCcccchhhhHHHHHhcCCcchhHHH
Confidence 446677888999777656666666777765443 345567788888888 34666667799999999999885555544
Q ss_pred --Hhhhhhhhcc
Q 022423 105 --IEHTFQISSL 114 (297)
Q Consensus 105 --r~~i~~I~~L 114 (297)
|+.+..|..+
T Consensus 85 ~tre~m~~~~~~ 96 (634)
T KOG1818|consen 85 ATREFMDLLKSL 96 (634)
T ss_pred HHHHHHHHHHhh
Confidence 4455555543
No 40
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=27.83 E-value=69 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 022423 133 KKAENIVALLNNKDKIQEVRNKASANREKY 162 (297)
Q Consensus 133 ~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki 162 (297)
+-++.|..|++|++.+++.++.+++...++
T Consensus 332 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 332 ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 778899999999999888887777665543
No 41
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=27.81 E-value=17 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHhhh
Q 022423 82 VYKALAVIEYLISHGSERAVDDIIEHT 108 (297)
Q Consensus 82 IyKaL~LLEYLLkNGservV~e~r~~i 108 (297)
+-|+|.||++|..++..--+.++-+.+
T Consensus 2 l~ral~iL~~l~~~~~~~t~~eia~~~ 28 (52)
T PF09339_consen 2 LERALRILEALAESGGPLTLSEIARAL 28 (52)
T ss_dssp HHHHHHHHHCHHCTBSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 568999999999999874445554443
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=27.43 E-value=6.8e+02 Score=25.91 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCC---------CchHHHHHHHHHHHHHHHcCCH-hHHHHHHhhhh----
Q 022423 44 HGTALAEIAQATKKFSECQMVMNVLWTRLAETG---------KDWRYVYKALAVIEYLISHGSE-RAVDDIIEHTF---- 109 (297)
Q Consensus 44 t~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~g---------k~WR~IyKaL~LLEYLLkNGse-rvV~e~r~~i~---- 109 (297)
++..|.+|+++-|.+-+...-+..|..+|.-.+ |.-|.|-|+|--.+-++.++.- .|+..-..-+.
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 467788899999988888888888888886322 4556666666666666666652 23322111110
Q ss_pred --hhhcccceEEeCC---CCCchhhHHHHHHHHHHHhhcChHHHHHHHHHH
Q 022423 110 --QISSLSSFEYVEP---SGKDMGINVRKKAENIVALLNNKDKIQEVRNKA 155 (297)
Q Consensus 110 --~I~~L~~Fqy~d~---~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kA 155 (297)
.| .+.-|..+.. .....|..|++ +.+|++..-|+-..--.|..|
T Consensus 302 ~~~i-r~~~~r~~c~C~~~d~~~~eAiqq-C~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 302 ETMI-RYNGFRVLCTCYREDEQFGEAIQQ-CKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred ccce-eeeeeheeeecccccCCHHHHHHH-HHHHHhcCchHHHHHHHHHHH
Confidence 11 2233332211 11235666665 666666665544444444443
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=27.41 E-value=1.1e+02 Score=28.90 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=28.0
Q ss_pred HHHHHhhCCCCCCCCH-HHHH-HHHHHcCC--chhHHHHHHHHHHHhhcCCCchHHHHH
Q 022423 30 QKVLDATDNEPWGPHG-TALA-EIAQATKK--FSECQMVMNVLWTRLAETGKDWRYVYK 84 (297)
Q Consensus 30 ~kVrEATsnDpWGPt~-s~M~-EIA~~T~~--~~~~~~Im~vLwKRL~d~gk~WR~IyK 84 (297)
.-+..|++|..|-|=+ .... -|+...-+ -.-...=...||++|+ .||.||+
T Consensus 77 ~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~----~Wr~vF~ 131 (221)
T KOG0037|consen 77 KELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN----QWRNVFR 131 (221)
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH----HHHHHHH
Confidence 4467888888775522 2211 12222111 1122333477899986 5999988
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.56 E-value=3.7e+02 Score=28.74 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=11.7
Q ss_pred CCccccccCcccCCCCCc
Q 022423 215 DTFGKSRRGAASENQGNT 232 (297)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~ 232 (297)
.+|..+.+.++.+.-+|.
T Consensus 785 ~pf~~aq~dmk~~d~sy~ 802 (840)
T KOG2003|consen 785 EPFESAQNDMKAEDASYD 802 (840)
T ss_pred CCchhhccchhhhccccC
Confidence 566666666777666554
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=25.21 E-value=96 Score=26.91 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhhccc
Q 022423 130 NVRKKAENIVALLNNKDKIQEVRNKASANREKY 162 (297)
Q Consensus 130 nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki 162 (297)
.+.+-|+.|.+||+|++..++.++.+++..++|
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999998888887665554
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=24.68 E-value=1e+02 Score=27.26 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 022423 85 ALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASAN 158 (297)
Q Consensus 85 aL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~ 158 (297)
.+.|+|+|. .|.+=|+.+.-.....|..-..--++++. .+-+-|+.|..|++|++.+++.++.+++.
T Consensus 277 ~~~~~Ea~a-~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~------d~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03823 277 PLVIREALA-AGVPVIASDIGGMAELVRDGVNGLLFPPG------DAEDLAAALERLIDDPDLLERLRAGIEPP 343 (359)
T ss_pred ChHHHHHHH-CCCCEEECCCCCHHHHhcCCCcEEEECCC------CHHHHHHHHHHHHhChHHHHHHHHhHHHh
Confidence 566888876 44444433322222233221111122221 26777899999999999988888777653
No 47
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=24.67 E-value=59 Score=24.77 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=26.5
Q ss_pred hhcCCCchHHHHHHHHH-----HHH-HHHcCCHhHHHHHHhh
Q 022423 72 LAETGKDWRYVYKALAV-----IEY-LISHGSERAVDDIIEH 107 (297)
Q Consensus 72 L~d~gk~WR~IyKaL~L-----LEY-LLkNGservV~e~r~~ 107 (297)
|...|+-.-.+||+|.| |+- +|-||+.++....|.-
T Consensus 4 ltsfgra~iscyksllltqlrvldrlil~hgp~r~ltc~rrv 45 (65)
T PF06336_consen 4 LTSFGRAFISCYKSLLLTQLRVLDRLILDHGPKRTLTCARRV 45 (65)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcceehhhHHH
Confidence 55667777889999865 443 4679999888877764
No 48
>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B ....
Probab=24.66 E-value=1e+02 Score=27.47 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=33.4
Q ss_pred hHHHHHH--hhhhhhhcccceEEeCCCCC--chhhHHHHHHHHHHHhhcChHHHHHHHHHH
Q 022423 99 RAVDDII--EHTFQISSLSSFEYVEPSGK--DMGINVRKKAENIVALLNNKDKIQEVRNKA 155 (297)
Q Consensus 99 rvV~e~r--~~i~~I~~L~~Fqy~d~~Gk--D~G~nVR~KAk~I~~LL~D~e~L~eER~kA 155 (297)
++|..+- .|+...+...+|-..+ .|. =+|..++++|+.|++ |-.|+.=.+-+++|
T Consensus 96 ~Iv~~l~~g~~vt~~r~dvd~VVTE-yGvA~LrG~s~~eRA~aLI~-iAHP~fR~~L~~~A 154 (154)
T PF13336_consen 96 RIVPRLPPGAPVTTPRHDVDYVVTE-YGVADLRGKSIRERAEALIS-IAHPDFRDELREEA 154 (154)
T ss_dssp SEESS-STTSSESB-TTT-SEEEET-TEEEE-TT--HHHHHHHHHH-TS-HHHHHHHHHHH
T ss_pred ceeeeecCCCCcccCcccCCEEEcC-CEEEEeCCCCHHHHHHHHHH-ccCccHHHHHHhhC
Confidence 4444444 3555556666666554 564 379999999999999 88998777666654
No 49
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.16 E-value=2.4e+02 Score=22.13 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=4.0
Q ss_pred HHHHHHHcC
Q 022423 88 VIEYLISHG 96 (297)
Q Consensus 88 LLEYLLkNG 96 (297)
|+.+|+..+
T Consensus 59 Ll~~L~~~~ 67 (113)
T PF02847_consen 59 LLSHLCKRK 67 (113)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 444444443
No 50
>PF08467 Luteo_P1-P2: Luteovirus RNA polymerase P1-P2/replicase; InterPro: IPR013674 This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses. ; GO: 0003968 RNA-directed RNA polymerase activity
Probab=23.38 E-value=1.1e+02 Score=30.51 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=35.6
Q ss_pred CchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccccccc
Q 022423 125 KDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLS 166 (297)
Q Consensus 125 kD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~s 166 (297)
.|+-...+-+++.+++||++.+.|...+.++++.-.+-.|-|
T Consensus 138 ~~~~~~~~~~~ek~~~Ll~~~~~f~~~e~ri~~~Y~ee~G~~ 179 (361)
T PF08467_consen 138 EPKSLENPARVEKFINLLEKKHVFSATEVRIKKVYEEEIGRG 179 (361)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467788899999999999999999999988888766666654
No 51
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.93 E-value=1e+02 Score=27.34 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHhh
Q 022423 130 NVRKKAENIVALLNNKDKIQEVRNKASANR 159 (297)
Q Consensus 130 nVR~KAk~I~~LL~D~e~L~eER~kAkk~R 159 (297)
++.+-|+.|.+|++|++.+++..+.+++..
T Consensus 318 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 318 DAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 345578899999999999888888777654
No 52
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=22.33 E-value=1.1e+02 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.541 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHhhcCCCchHHHHH
Q 022423 59 SECQMVMNVLWTRLAETGKDWRYVYK 84 (297)
Q Consensus 59 ~~~~~Im~vLwKRL~d~gk~WR~IyK 84 (297)
--|...++.+|.+++. ||.|.+|..
T Consensus 28 ~~fd~~~d~~w~~~Nk-GKlwkDIk~ 52 (55)
T PF05365_consen 28 RAFDSATDKIWDSINK-GKLWKDIKH 52 (55)
T ss_dssp HHHHHHHHHHHHHHTT-TTSHHHHGG
T ss_pred HHHhHHHHHHHHhccC-CCCcccChh
Confidence 3466789999999876 899999853
No 53
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.13 E-value=89 Score=31.01 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHc--CCchhHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccce
Q 022423 47 ALAEIAQAT--KKFSECQM-VMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSF 117 (297)
Q Consensus 47 ~M~EIA~~T--~~~~~~~~-Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~F 117 (297)
...||.+.+ .+.-+|.. +-+.|.++|.....+.-++.--=..|+++|.-|.++..+.+..++..|+.+.-|
T Consensus 271 s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf 344 (347)
T KOG2713|consen 271 SIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLEEGAEKARELAAKNLEEIKQLMGF 344 (347)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 344555433 44445544 777888888765545544444456899999999999999999999988877655
No 54
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=21.55 E-value=5.3e+02 Score=22.27 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHcCCchhH-HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 48 LAEIAQATKKFSEC-QMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 48 M~EIA~~T~~~~~~-~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
+--++.++..++.. ...+..|.++|.+..-.-|. -||.+|-+|+.+|.-.+-..+
T Consensus 9 i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~--~al~~Ls~Li~~d~ik~k~~l 64 (178)
T PF12717_consen 9 IIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRK--TALLVLSHLILEDMIKVKGQL 64 (178)
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHcCceeehhhh
Confidence 33455555555433 33677888999986544444 599999999999886654433
No 55
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.53 E-value=1e+02 Score=26.59 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=24.3
Q ss_pred CHHHHHHHHHH----cCCchhHHHHHHHHHHHhhcC
Q 022423 44 HGTALAEIAQA----TKKFSECQMVMNVLWTRLAET 75 (297)
Q Consensus 44 t~s~M~EIA~~----T~~~~~~~~Im~vLwKRL~d~ 75 (297)
|+..|.++++. -.+.++...|=+||.|||+.-
T Consensus 88 TgnkMddvSrRL~aEgKdIdeLKKiN~mIvkrLNQl 123 (128)
T PF15145_consen 88 TGNKMDDVSRRLTAEGKDIDELKKINSMIVKRLNQL 123 (128)
T ss_pred ccchHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhh
Confidence 56678887664 367788889999999999753
No 56
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.48 E-value=4.6e+02 Score=24.83 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCCCC-----CCCHHHHHHHHHHcCCchhHHH-HHHHHHHHhhcCCCchHHHHHHH----HHHHHHHHcC
Q 022423 27 EIEQKVLDATDNEPW-----GPHGTALAEIAQATKKFSECQM-VMNVLWTRLAETGKDWRYVYKAL----AVIEYLISHG 96 (297)
Q Consensus 27 e~E~kVrEATsnDpW-----GPt~s~M~EIA~~T~~~~~~~~-Im~vLwKRL~d~gk~WR~IyKaL----~LLEYLLkNG 96 (297)
-.|.++.++..+++- .++...+..+...--+++.|.+ |++++.|- .-+.|+.+++.| .|++-+|.+|
T Consensus 117 ~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~~~l~Ivv~C~RKt---E~~~W~~LF~~lg~P~dLf~~cl~~~ 193 (258)
T PF07064_consen 117 ALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFPEYLEIVVNCARKT---EVRYWPYLFDYLGSPRDLFEECLENG 193 (258)
T ss_pred HHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCcchHHHHHHHHHhh---HHHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 468888888777655 5677888888888766666644 44444432 137999999865 6888888888
Q ss_pred CHhHH
Q 022423 97 SERAV 101 (297)
Q Consensus 97 servV 101 (297)
.-+..
T Consensus 194 ~l~tA 198 (258)
T PF07064_consen 194 NLKTA 198 (258)
T ss_pred cHHHH
Confidence 75533
No 57
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=21.24 E-value=1.6e+02 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=32.9
Q ss_pred CCCHHHHH--HHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCC
Q 022423 24 KVPEIEQK--VLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETG 76 (297)
Q Consensus 24 n~se~E~k--VrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~g 76 (297)
.+++.++. ++.++ +|....-|..+......|..++..|.+|...+.
T Consensus 24 ~~~d~~K~~~L~~~L-------~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~ 71 (145)
T PF03564_consen 24 DLSDIEKLNYLRSCL-------KGEAKELIRGLPLSEENYEEAWELLEERYGNPR 71 (145)
T ss_pred CCCHHHHHHHHHHHh-------cchHHHHHHcccccchhhHHHHHHHHHHhCCch
Confidence 45666665 45665 344556667777778889999999999998764
No 58
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.49 E-value=1.5e+02 Score=26.54 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 022423 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (297)
Q Consensus 130 nVR~KAk~I~~LL~D~e~L~eER~kAkk~ 158 (297)
++-+-|+.|..||+|++.+++-++++++.
T Consensus 318 d~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 346 (357)
T cd03795 318 DPAALAEAIRRLLEDPELRERLGEAARER 346 (357)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 56678999999999999988888887764
No 59
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=9.6e+02 Score=25.53 Aligned_cols=99 Identities=13% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhc--CCCc-hHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccc
Q 022423 40 PWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAE--TGKD-WRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSS 116 (297)
Q Consensus 40 pWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d--~gk~-WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~ 116 (297)
+.| +..++.|.+..-+.++-..|+..|.-++.. ++++ -..|.+||.++.+ ...+-+.+.+-++...|...+.
T Consensus 301 ~~G--Tr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~---~~~~~l~e~i~~~c~~iA~~~h 375 (536)
T KOG2049|consen 301 MYG--TRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSK---EKNEFLYEAILRYCLDLATDQH 375 (536)
T ss_pred Cch--hHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCc---hhhhHHHHHHHHHHHHHHHhcc
Confidence 455 556666777777777778889998888864 3444 4456677777654 4445555555555555543222
Q ss_pred --------eEEeCCCCCchhhHHHHHHHHHHHhhcCh
Q 022423 117 --------FEYVEPSGKDMGINVRKKAENIVALLNNK 145 (297)
Q Consensus 117 --------Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~ 145 (297)
+.+. .|..+...|-+-+..-+-|.+|+
T Consensus 376 GCcvLq~cl~~~--~~~~rd~Lv~~i~~naL~Ls~d~ 410 (536)
T KOG2049|consen 376 GCCVLQKCLDYS--RGEQRDRLVEEISRNALLLSNDP 410 (536)
T ss_pred ccchhHHHhcch--hHHHHHHHHHHHHHHhHhhhcCc
Confidence 3332 35566666767777666666665
No 60
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=20.25 E-value=1.2e+02 Score=26.70 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHh-hccc
Q 022423 132 RKKAENIVALLNNKDKIQEVRNKASAN-REKY 162 (297)
Q Consensus 132 R~KAk~I~~LL~D~e~L~eER~kAkk~-R~Ki 162 (297)
-+-|+.|..|++|++..++..++|++. +++|
T Consensus 333 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 364 (375)
T cd03821 333 DALAAALRRALELPQRLKAMGENGRALVEERF 364 (375)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 667889999999998888888887776 5554
No 61
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=20.06 E-value=1.6e+02 Score=21.95 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHh
Q 022423 130 NVRKKAENIVALLNNKDKIQEVRNKASAN 158 (297)
Q Consensus 130 nVR~KAk~I~~LL~D~e~L~eER~kAkk~ 158 (297)
++.+-+..|..||+|++..++..++|++.
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 67788899999999999888887777654
Done!