Query 022423
Match_columns 297
No_of_seqs 140 out of 404
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xgw_A Epsin 4; ENTH, enthopro 100.0 3.2E-61 1.1E-65 424.0 16.1 159 9-167 16-175 (176)
2 3onk_A Epsin-3, ENT3; helix, p 100.0 1.9E-59 6.5E-64 403.5 16.8 148 18-165 2-150 (150)
3 1eyh_A Epsin; superhelix of he 100.0 1.2E-56 4.1E-61 383.4 16.1 143 23-165 1-143 (144)
4 1inz_A EPS15-interacting porte 100.0 2.3E-56 8E-61 383.3 1.5 142 11-152 7-148 (148)
5 1vdy_A Hypothetical protein (R 100.0 8.9E-36 3E-40 253.8 11.5 116 29-146 13-132 (140)
6 3zyl_A Phosphatidylinositol-bi 99.6 1E-15 3.6E-20 141.8 10.6 127 8-138 10-138 (271)
7 3zym_A Phosphatidylinositol-bi 99.6 9.6E-16 3.3E-20 144.4 10.3 127 8-138 10-138 (310)
8 1hx8_A Synapse-enriched clathr 99.2 4.2E-11 1.4E-15 111.8 10.8 129 9-141 6-147 (299)
9 3rru_A TOM1L1 protein; structu 97.9 0.00011 3.9E-09 62.6 12.0 114 26-143 15-129 (152)
10 3ldz_A STAM-1, signal transduc 97.9 0.00013 4.6E-09 61.0 11.4 107 25-142 3-112 (140)
11 1elk_A Target of MYB1; superhe 97.9 0.00017 5.7E-09 61.5 11.9 111 26-144 15-130 (157)
12 1juq_A ADP-ribosylation factor 97.8 0.00014 4.9E-09 62.9 11.0 115 24-143 10-127 (171)
13 3zyq_A Hepatocyte growth facto 97.8 0.00014 4.9E-09 65.1 10.6 129 23-161 4-139 (226)
14 3g2s_A C-terminal fragment of 97.7 0.00044 1.5E-08 58.8 11.3 114 24-142 8-124 (149)
15 1x5b_A Signal transducing adap 97.7 0.0014 4.9E-08 56.1 14.6 127 25-161 13-146 (163)
16 1mhq_A ADP-ribosylation factor 97.6 0.00071 2.4E-08 57.2 12.3 111 28-143 2-115 (148)
17 1dvp_A HRS, hepatocyte growth 97.6 0.00047 1.6E-08 61.1 10.9 110 26-143 4-114 (220)
18 1sz9_A PCF11 protein; RNA poly 76.0 17 0.00058 30.0 9.2 105 40-156 22-136 (144)
19 2ijq_A Hypothetical protein; s 70.5 6.2 0.00021 33.8 5.3 83 57-148 47-134 (161)
20 4flb_A Regulation of nuclear P 58.4 66 0.0023 25.3 10.1 97 44-154 20-127 (132)
21 3fga_B Serine/threonine-protei 47.1 1.3E+02 0.0045 29.1 10.7 126 8-144 232-366 (403)
22 3d9j_A RNA-binding protein 16; 44.8 1E+02 0.0036 25.1 8.3 118 27-156 6-136 (145)
23 3ut4_A CTHE_2751, putative unc 43.3 1.4E+02 0.0048 24.7 9.3 92 32-141 36-127 (134)
24 2pk2_A Cyclin-T1, protein TAT; 40.0 16 0.00056 34.3 3.0 25 129-153 232-257 (358)
25 3zed_D Capsid protein VP3; vir 36.9 74 0.0025 28.9 6.5 79 59-139 9-93 (242)
26 2db0_A 253AA long hypothetical 29.9 58 0.002 29.6 4.6 62 25-98 3-65 (253)
27 4hfx_A Transcription elongatio 29.3 28 0.00097 27.5 2.3 42 43-87 25-75 (97)
28 2b4j_C PC4 and SFRS1 interacti 29.2 52 0.0018 26.1 3.8 66 61-140 8-77 (98)
29 4fu3_A Regulation of nuclear P 28.8 1.2E+02 0.0039 23.9 5.9 97 47-153 22-127 (135)
30 2qk2_A LP04448P; mini spindles 28.4 1.3E+02 0.0044 25.1 6.5 67 32-100 20-92 (242)
31 1o5h_A Formiminotetrahydrofola 24.1 1.2E+02 0.0042 26.8 5.7 62 77-140 123-193 (214)
32 1z9e_A PC4 and SFRS1 interacti 22.7 52 0.0018 27.3 2.8 66 61-140 8-77 (127)
33 2npp_B PP2A, B subunit, serine 22.7 5E+02 0.017 25.3 10.3 126 8-144 265-399 (449)
No 1
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=3.2e-61 Score=424.01 Aligned_cols=159 Identities=42% Similarity=0.788 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 022423 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALA 87 (297)
Q Consensus 9 q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL-~d~gk~WR~IyKaL~ 87 (297)
+.|+.++|+|+|+|++|||+|++|+||||||||||++++|+|||++||++++|++||++||+|| .+.+++||||||||+
T Consensus 16 ~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~ 95 (176)
T 1xgw_A 16 WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLL 95 (176)
T ss_dssp ------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999996 778999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccC
Q 022423 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS 167 (297)
Q Consensus 88 LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~sS 167 (297)
||||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+||
T Consensus 96 LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 96 LLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=1.9e-59 Score=403.47 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=133.6
Q ss_pred HhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHHHHHcC
Q 022423 18 VNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAET-GKDWRYVYKALAVIEYLISHG 96 (297)
Q Consensus 18 v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~-gk~WR~IyKaL~LLEYLLkNG 96 (297)
+.|+|+||||+|++|+||||||||||++++|+|||++||++.+|.+||++|||||.++ +++||||||||+||||||+||
T Consensus 2 ~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 2 LMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999987 589999999999999999999
Q ss_pred CHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 022423 97 SERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (297)
Q Consensus 97 servV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~ 165 (297)
||+||+|+|+|+++|+.|++|+|+|++|+|||++||+||++|++||+|+++|++||++|+++|+||.|+
T Consensus 82 se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 82 SERFIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 3
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=1.2e-56 Score=383.42 Aligned_cols=143 Identities=41% Similarity=0.753 Sum_probs=140.9
Q ss_pred cCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHH
Q 022423 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (297)
Q Consensus 23 ~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~ 102 (297)
.|||++|++|+||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccc
Q 022423 103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGL 165 (297)
Q Consensus 103 e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~ 165 (297)
++++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|.
T Consensus 81 ~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 4
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=2.3e-56 Score=383.27 Aligned_cols=142 Identities=41% Similarity=0.775 Sum_probs=139.2
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 022423 11 VREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIE 90 (297)
Q Consensus 11 vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLE 90 (297)
+++++|+|+|+|++||++|++|+||||||||||++++|++||++||++.+|.+||++||+||.+++++||||||||+|||
T Consensus 7 ~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lle 86 (148)
T 1inz_A 7 TSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLME 86 (148)
T ss_dssp CCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHH
Q 022423 91 YLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR 152 (297)
Q Consensus 91 YLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER 152 (297)
|||+||||+||+++++|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||
T Consensus 87 yLl~nGse~vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 87 YLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHTTCHHHHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHhCCHHHHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=100.00 E-value=8.9e-36 Score=253.82 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=110.2
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 29 EQKVLDATDNEPWGPHGTALAEIAQATKKF--SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 29 E~kVrEATsnDpWGPt~s~M~EIA~~T~~~--~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
+.+|++||+|||||||+.+|.|||++||+. +.|.+||++||+||+++ .|+++||||+||+||++||+++|+.++|.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 468999999999999999999999999996 55799999999999995 58899999999999999999999999999
Q ss_pred hhhhhhcccceEEeCC--CCCchhhHHHHHHHHHHHhhcChH
Q 022423 107 HTFQISSLSSFEYVEP--SGKDMGINVRKKAENIVALLNNKD 146 (297)
Q Consensus 107 ~i~~I~~L~~Fqy~d~--~GkD~G~nVR~KAk~I~~LL~D~e 146 (297)
|+++|++|++|+|+++ +|.|+|++||++|++|++||.|++
T Consensus 91 ~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 91 NSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcC
Confidence 9999999999999975 899999999999999999999986
No 6
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.62 E-value=1e-15 Score=141.84 Aligned_cols=127 Identities=22% Similarity=0.338 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCch-hHHHHHHHHHHHhhcCCCchHHHHHHH
Q 022423 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (297)
Q Consensus 8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~-~~~~Im~vLwKRL~d~gk~WR~IyKaL 86 (297)
.|++.+--..+++.|.+ +++|+.|..||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++|||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~KaL 86 (271)
T 3zyl_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (271)
T ss_dssp --CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 46777766788888888 9999999999999999999999999999999875 47899999999999 48999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC-CCCCchhhHHHHHHHHH
Q 022423 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (297)
Q Consensus 87 ~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d-~~GkD~G~nVR~KAk~I 138 (297)
+||.+||+.|++.|+.+++.|.. |-.|.+|.... ..|.|++.-||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~-~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL 138 (271)
T 3zyl_A 87 ITTHHLMVYGNERFIQYLASRNT-LFNLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (271)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSC-CCCCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCC-eechhccCCCCCCCcccccHHHHHHHHHH
Confidence 99999999999999999988875 55888876432 13557788999999877
No 7
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.62 E-value=9.6e-16 Score=144.38 Aligned_cols=127 Identities=22% Similarity=0.337 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCch-hHHHHHHHHHHHhhcCCCchHHHHHHH
Q 022423 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKAL 86 (297)
Q Consensus 8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~-~~~~Im~vLwKRL~d~gk~WR~IyKaL 86 (297)
.|++.+=-..+++.|.+ +++|+.|..||++++|+|..+.+.+|..+|++.. .+..||..|++||. .++|++++|||
T Consensus 10 ~~~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~--~~~w~vv~KaL 86 (310)
T 3zym_A 10 GQSLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSL 86 (310)
T ss_dssp --CHHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTT--SSCHHHHHHHH
T ss_pred cccHHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcC--CCchHHHHHHH
Confidence 46666656788888888 9999999999999999999999999999999875 47899999999999 48999999999
Q ss_pred HHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC-CCCCchhhHHHHHHHHH
Q 022423 87 AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE-PSGKDMGINVRKKAENI 138 (297)
Q Consensus 87 ~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d-~~GkD~G~nVR~KAk~I 138 (297)
+||.+||+.|++.|+.+++.|..++ .|.+|.... ..|.|+|..||.-|+-|
T Consensus 87 ivlH~llreG~~~~l~~~~~~~~~~-~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL 138 (310)
T 3zym_A 87 ITTHHLMVYGNERFIQYLASRNTLF-NLSNFLDKSGLQGYDMSTFIRRYSRYL 138 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHCSCCC-CCTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhCCCee-ecccccCCCCcCcccccHHHHHHHHHH
Confidence 9999999999999999999887544 889885321 13568889999999987
No 8
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.22 E-value=4.2e-11 Score=111.81 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCch-hHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 022423 9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFS-ECQMVMNVLWTRLAETGKDWRYVYKALA 87 (297)
Q Consensus 9 q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~-~~~~Im~vLwKRL~d~gk~WR~IyKaL~ 87 (297)
|++|+.-..+++-. .-+++|+.|..||+.+.|+|..+.+.+|..+|++.. ....++..|++|+ ..++|.+++|||+
T Consensus 6 ~~~~~~~~a~k~~~-~~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~--~~~~w~va~K~Li 82 (299)
T 1hx8_A 6 QTINDRLLAARHSL-AGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERS--QNANWVVVYKSLI 82 (299)
T ss_dssp -----------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH--TCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhc--cCCcHHHHHHHHH
Confidence 44444333444211 246999999999999999999999999999998874 4678999999995 4569999999999
Q ss_pred HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeC------------CCCCchhhHHHHHHHHHHHh
Q 022423 88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVE------------PSGKDMGINVRKKAENIVAL 141 (297)
Q Consensus 88 LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d------------~~GkD~G~nVR~KAk~I~~L 141 (297)
||..||+.|++.|+.++..+.. |-.|.+|.=.. ..|.|+|..||.-|+-|.+-
T Consensus 83 vlH~llreG~~~~~~~l~~~~~-~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r 147 (299)
T 1hx8_A 83 TTHHLMAYGNERFMQYLASSNS-TFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEK 147 (299)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTC-CCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHhCCc-ccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999976533 33556662110 12347889999999866543
No 9
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.92 E-value=0.00011 Score=62.63 Aligned_cols=114 Identities=11% Similarity=0.154 Sum_probs=80.1
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
|+++..|..||+..--.|.-...-|||+.-.. ...-.+.|..|.|||. .+++.+.++-||+|||-|++|+-.+|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~-~~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 89999999999965555666677777777533 3456789999999998 445777777899999999999999998888
Q ss_pred HhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 105 r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
-..-++-+.|... +.+.. ..-..||+|+.+|+.-..
T Consensus 94 ask~Fl~e~L~kl--~~~~~-~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 94 VKKEFVKENLVKL--LNPRY-NLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp SSHHHHTTTTGGG--GSGGG-CCCHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHH--hcCCC-CCcHHHHHHHHHHHHHHH
Confidence 5433221112211 11111 123479999988887654
No 10
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.87 E-value=0.00013 Score=60.96 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e 103 (297)
-+|.+..|..||+...-.|.-...-+|++.--.. ..-.+.+..|.|||.. ++-...+-||+|||.|++|+-.+|-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~--~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNH--KDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3788999999999876677777888888886553 3456799999999986 466678999999999999998877755
Q ss_pred H--HhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 022423 104 I--IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (297)
Q Consensus 104 ~--r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL 142 (297)
+ ++-+..+..|-. + .-..||+|+..++.-.
T Consensus 81 vas~~Fl~el~~l~~------~---~~~~Vk~kil~li~~W 112 (140)
T 3ldz_A 81 VCSRDFASEVSNVLN------K---GHPKVCEKLKALMVEW 112 (140)
T ss_dssp HSSHHHHHHHHHHHH------H---SCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhc------c---CCHHHHHHHHHHHHHH
Confidence 5 333332222211 0 1247999988888644
No 11
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.86 E-value=0.00017 Score=61.46 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=79.9
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
++++.+|..||+...-.|.-...-+||..-.. ...-.+.+..|.|||.. .++...++-||+|||.|++|+-.+|-.++
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~-~~n~~v~l~AL~LLd~~vkNcG~~fh~ev 93 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVG-NKNFHEVMLALTVLETCVKNCGHRFHVLV 93 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 48999999999976667777777788877533 34567899999999985 35777889999999999999988887766
Q ss_pred Hhh--hhh--hhcccceEEeCCCCCchhhHHHHHHHHHHHhhcC
Q 022423 105 IEH--TFQ--ISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 105 r~~--i~~--I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D 144 (297)
-.. +.. ++.+ .+++ +.-..||+|+.+++.-..+
T Consensus 94 a~~~fl~e~Lvk~~------~~k~-~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 94 ASQDFVESVLVRTI------LPKN-NPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp TSHHHHHHHTHHHH------STTT-CCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh------ccCC-CCcHHHHHHHHHHHHHHHH
Confidence 432 221 1211 1111 1235899999888876543
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.82 E-value=0.00014 Score=62.89 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHH
Q 022423 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (297)
Q Consensus 24 n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~ 102 (297)
..++++..|..||+...-.|.-....+|++.-.. ...-.+.+..|.|||.. ++-...+-||+|||.|++|+...|-.
T Consensus 10 ~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~--~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 10 EGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQS--PQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp --CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3578999999999976666777778888877533 34567799999999986 47788899999999999998888777
Q ss_pred HHHhh--hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 103 DIIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 103 e~r~~--i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
++-.. +..|..|-.=.| .|...-..||+|+.+|+.-..
T Consensus 88 evas~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKY---LGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCC---CCTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 66433 222222211112 123345799999999887554
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.77 E-value=0.00014 Score=65.13 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=89.4
Q ss_pred cCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHH
Q 022423 23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAV 101 (297)
Q Consensus 23 ~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV 101 (297)
..-++++..|..||+...-.|.-....+|++.-... ..-.+.|..|.|||.. ++-..++-||+|||.|++|+..+|-
T Consensus 4 ~~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f~ 81 (226)
T 3zyq_A 4 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTVH 81 (226)
T ss_dssp ---CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHHH
Confidence 345899999999999877777878888888886443 3457899999999984 6777899999999999999888777
Q ss_pred HHHHhh--hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc----ChHHHHHHHHHHHHhhcc
Q 022423 102 DDIIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN----NKDKIQEVRNKASANREK 161 (297)
Q Consensus 102 ~e~r~~--i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~----D~e~L~eER~kAkk~R~K 161 (297)
.++-.. +..|..|- . ......||+|+.+|+.-.. ++..|..-+.--+.++.+
T Consensus 82 ~eias~~fl~~l~~l~-----~---~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 82 DEVANKQTMEELKDLL-----K---RQVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVE 139 (226)
T ss_dssp HHHSSHHHHHHHHHHH-----H---HCCCHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHh-----c---cCCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Confidence 766332 22232221 1 1123589999998887542 344455555555555443
No 14
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.65 E-value=0.00044 Score=58.76 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHH
Q 022423 24 KVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKF-SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD 102 (297)
Q Consensus 24 n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~-~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~ 102 (297)
.-++++..|..||+...-.|.-...-+||+.-... ..-...+..|.|||.. ++-...+-||+|||.|++|+-.+|-.
T Consensus 8 ~~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 8 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp SCCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34889999999999877778888999999986543 3456799999999984 68888999999999999999998877
Q ss_pred HHHhh--hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhh
Q 022423 103 DIIEH--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALL 142 (297)
Q Consensus 103 e~r~~--i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL 142 (297)
++-.. +..|..|-.=+| .|...-..||+|+.+|+.-.
T Consensus 86 eias~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 86 EVGKFRFLNELIKVVSPKY---LGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHTSHHHHHHHHHHHCTTT---TGGGSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHcccc---cCCCCCHHHHHHHHHHHHHH
Confidence 66332 222221111011 12223468999998888654
No 15
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.65 E-value=0.0014 Score=56.12 Aligned_cols=127 Identities=10% Similarity=0.108 Sum_probs=84.8
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDD 103 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e 103 (297)
-+|++.+|..||+...-.|.-...-+||+.-.. ...-.+.+..|.|||.. ++-...+-||+|||.|++|+...|-.+
T Consensus 13 ~~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~--~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 13 ANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNH--KVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CCTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 478899999999976667777777788877533 34567899999999986 345567779999999999998877755
Q ss_pred HHh--hhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc----ChHHHHHHHHHHHHhhcc
Q 022423 104 IIE--HTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN----NKDKIQEVRNKASANREK 161 (297)
Q Consensus 104 ~r~--~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~----D~e~L~eER~kAkk~R~K 161 (297)
+-. -+..|..|- .++ .-..||+|+.+++.-.. +...|..-+.--+.++.+
T Consensus 91 vas~~Fl~el~~l~-----~~~---~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 146 (163)
T 1x5b_A 91 VCSRDFATEVRAVI-----KNK---AHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEE 146 (163)
T ss_dssp HTSHHHHHHHHHHH-----HTT---CCHHHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHH-----ccC---CCHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHc
Confidence 533 222221111 111 12479999998886543 223344445555555544
No 16
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.64 E-value=0.00071 Score=57.23 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHh
Q 022423 28 IEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIE 106 (297)
Q Consensus 28 ~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~ 106 (297)
++..|..||+.-.-.|.-....+|++.-.. ...-.+.+..|.|||.. ++-...+-||+|||.|++|+..+|-.++-.
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 568899999976666776777788877533 34567899999999974 578888999999999999999888777643
Q ss_pred h--hhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 107 H--TFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 107 ~--i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
. +..|..|-.=+| .|...-..||+|+.+++.-..
T Consensus 80 ~~Fl~eL~kl~~~k~---~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 80 FRFLNELIKVLSPKY---LGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTTCCST---TSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccc---CCCCCCHHHHHHHHHHHHHHH
Confidence 2 332222211012 122235699999988886543
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.58 E-value=0.00047 Score=61.09 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=77.9
Q ss_pred CHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHH
Q 022423 26 PEIEQKVLDATDNEPWGPHGTALAEIAQATKK-FSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDI 104 (297)
Q Consensus 26 se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~-~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~ 104 (297)
|+++..|..||+...-.|.-...-||++.-.. ...-.+.+..|.|||.. ++-...+-||+|||.|++|+-..|-.++
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67899999999976667777788888888644 33566899999999986 5778899999999999999877776654
Q ss_pred HhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc
Q 022423 105 IEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN 143 (297)
Q Consensus 105 r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~ 143 (297)
-..- .+..|... +. + ..-..||+|+.+|+....
T Consensus 82 a~~~-fl~~l~~l--~~-~--~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 82 FTKE-NCEMFSSF--LE-S--TPHENVRQKMLELVQTWA 114 (220)
T ss_dssp SSHH-HHHHHHHH--HH-H--CSCHHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHH--hc-C--CCcHHHHHHHHHHHHHHH
Confidence 3211 11111111 11 0 123589999888876554
No 18
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=76.02 E-value=17 Score=30.03 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEE
Q 022423 40 PWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEY 119 (297)
Q Consensus 40 pWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy 119 (297)
+.+|....|..+|.. +......|+++|.++|... .-.+-+=+|-|++-+++|....++..|-.++..+-. .-|.-
T Consensus 22 nSk~~I~~LT~~a~~--~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~-~~~~~ 96 (144)
T 1sz9_A 22 NSRPIITTLTKLAEE--NISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK-RTYLL 96 (144)
T ss_dssp CCHHHHHHHHHHHHH--TGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH-HHHHT
T ss_pred ccHhHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHh
Confidence 345555555555554 6678899999999999863 345666789999999999877788877777654311 12221
Q ss_pred eCCCCCchhhHHHHHHHHHHHhhcCh----------HHHHHHHHHHH
Q 022423 120 VEPSGKDMGINVRKKAENIVALLNNK----------DKIQEVRNKAS 156 (297)
Q Consensus 120 ~d~~GkD~G~nVR~KAk~I~~LL~D~----------e~L~eER~kAk 156 (297)
+ ...+|.|..+|+..=... +.|+.-|..-.
T Consensus 97 ~-------d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~ 136 (144)
T 1sz9_A 97 V-------DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLI 136 (144)
T ss_dssp S-------CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHH
Confidence 2 248999999999988755 77777665543
No 19
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=70.50 E-value=6.2 Score=33.81 Aligned_cols=83 Identities=6% Similarity=0.131 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHHhhcCCCchHHHHHHHHH----HHHHHHcCCHhHHH-HHHhhhhhhhcccceEEeCCCCCchhhHH
Q 022423 57 KFSECQMVMNVLWTRLAETGKDWRYVYKALAV----IEYLISHGSERAVD-DIIEHTFQISSLSSFEYVEPSGKDMGINV 131 (297)
Q Consensus 57 ~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~L----LEYLLkNGservV~-e~r~~i~~I~~L~~Fqy~d~~GkD~G~nV 131 (297)
.+-+|.+|++-+|+.......+ |.++++|+. --|=+.+|..+-.. -++.-+..|+.+.. ...|+.|
T Consensus 47 ~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~--------~~~GIDv 117 (161)
T 2ijq_A 47 EFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN--------DYYGVDL 117 (161)
T ss_dssp CHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT--------TGGGBCH
T ss_pred CchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC--------ccCCcCH
Confidence 3456778999999988654323 777777766 33446777754333 33444444544321 3467778
Q ss_pred HHHHHHHHHhhcChHHH
Q 022423 132 RKKAENIVALLNNKDKI 148 (297)
Q Consensus 132 R~KAk~I~~LL~D~e~L 148 (297)
..-...|-++|.|++.+
T Consensus 118 ~~L~~~~~~~l~dp~~~ 134 (161)
T 2ijq_A 118 LDVRTTVTNALSDPSAL 134 (161)
T ss_dssp HHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHhhCCccC
Confidence 77777788888887754
No 20
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=58.44 E-value=66 Score=25.34 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCC----HhHHHHHHhhhhhhhcccceE
Q 022423 44 HGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS----ERAVDDIIEHTFQISSLSSFE 118 (297)
Q Consensus 44 t~s~M~EIA~~T-~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGs----ervV~e~r~~i~~I~~L~~Fq 118 (297)
+-.-.+.++.+. ++......|+++|.++|...+.+ +-+-.|-|++-+|+|.. ..++..+...+..+ |.
T Consensus 20 s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~--~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~-----~~ 92 (132)
T 4flb_A 20 TMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYP--HRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA-----AA 92 (132)
T ss_dssp SHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHH-----HH
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChh--hHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH-----HH
Confidence 455566666665 56678889999999999876543 44577999999999863 45556555554422 21
Q ss_pred Ee-CCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHHH
Q 022423 119 YV-EPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNK 154 (297)
Q Consensus 119 y~-d~~GkD~G~nVR~KAk~I~~LL~-----D~e~L~eER~k 154 (297)
.+ ++ .+|++..+|+++-. +++.|++-|+.
T Consensus 93 ~~~~~-------~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~ 127 (132)
T 4flb_A 93 LVKDP-------SVSKSVERIFKIWEDRNVYPEEMIVALREA 127 (132)
T ss_dssp TTCST-------TTHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhCCH-------HHHHHHHHHHHHhccCCCcCHHHHHHHHHH
Confidence 11 22 35778888888765 46777666653
No 21
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=47.11 E-value=1.3e+02 Score=29.09 Aligned_cols=126 Identities=16% Similarity=0.123 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHH------HHHHHHcCCchhHHHHHHHHHHHhhc--CCCch
Q 022423 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTAL------AEIAQATKKFSECQMVMNVLWTRLAE--TGKDW 79 (297)
Q Consensus 8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M------~EIA~~T~~~~~~~~Im~vLwKRL~d--~gk~W 79 (297)
.|..+=+...+.. +-+-++.-|+--..-=|+..+.+++ .+|.+. -+..+|..||..|.+||.. ...+.
T Consensus 232 ~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~-~~~~~f~~i~~~lf~~la~ci~S~hf 307 (403)
T 3fga_B 232 PQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV-IEPSEFVKIMEPLFRQLAKCVSSPHF 307 (403)
T ss_dssp HHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHh---CchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 4555555555543 4455556666666554444444432 344443 3678999999999999984 34588
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCC-CCchhhHHHHHHHHHHHhhcC
Q 022423 80 RYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 80 R~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~-GkD~G~nVR~KAk~I~~LL~D 144 (297)
...-.||.+. ..+.++.-+.+|...|-.+- |.-...+ -.-|...||..|-.++.+|.+
T Consensus 308 qVAErAL~~w------nNe~i~~li~~n~~~IlPii-~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 308 QVAERALYYW------NNEYIMSLISDNAAKILPIM-FPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHGGG------GCHHHHHHHHTTHHHHHHHH-HHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh------ccHHHHHHHHHhHHHHHHHH-HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 8888888776 33555555555554332211 0000011 224788999999999999844
No 22
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=44.79 E-value=1e+02 Score=25.11 Aligned_cols=118 Identities=13% Similarity=0.170 Sum_probs=76.7
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCH-------
Q 022423 27 EIEQKVLDATDNEPWGPHGTALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE------- 98 (297)
Q Consensus 27 e~E~kVrEATsnDpWGPt~s~M~EIA~~T-~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGse------- 98 (297)
+.|..+.+-+...|- .+...+..|..++ .+...+..|+..|.++|...+. ++-+=.|-|++=+++|.-.
T Consensus 6 ~f~~~L~~L~~~k~~-~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~--~~KL~~LYL~DsIvrn~~~k~~~~~~ 82 (145)
T 3d9j_A 6 TFNSELYSLNDYKPP-ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKP--EYKVPGLYVIDSIVRQSRHQFGQEKD 82 (145)
T ss_dssp HHHHHHHGGGGSCSS-CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--cceeehhhhhHHHHHHhhhhcCCccc
Confidence 344555555444322 5666666666654 5667889999999999987543 4557799999999999765
Q ss_pred hHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHHHHH
Q 022423 99 RAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLN-----NKDKIQEVRNKAS 156 (297)
Q Consensus 99 rvV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~-----D~e~L~eER~kAk 156 (297)
.++..|..++..+-. .-|. ....+|.|..+|+++=. .++.|+.-|....
T Consensus 83 ~f~~~F~~~L~~~f~-~~~~--------~~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~ 136 (145)
T 3d9j_A 83 VFAPRFSNNIISTFQ-NLYR--------CPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAA 136 (145)
T ss_dssp SHHHHHHHHHHHHHH-HHTS--------SCGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-HHHh--------CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhc
Confidence 566666555442211 1121 12478899999988764 6677777766553
No 23
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=43.28 E-value=1.4e+02 Score=24.73 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=68.3
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhh
Q 022423 32 VLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQI 111 (297)
Q Consensus 32 VrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I 111 (297)
+.+=.-+-+|.+......-++.. . ..++..|++-|...+..|.. -||+||+.+=+.+.+..++.-+..|
T Consensus 36 LL~WLQD~NWPvA~~i~~~L~~~--~----~~l~p~I~~vl~s~D~~W~y-----wil~~lv~~~~~~~~~~l~~eL~rl 104 (134)
T 3ut4_A 36 LLKWLQDYNWPIAKDILPVVVLH--Q----SIAMPHILTILQGNDIMWKY-----WVIKLMIPYLIYPNKQLVKSELERL 104 (134)
T ss_dssp HHGGGSCTTSTTHHHHHHHHHHT--H----HHHHHHHHHHHHSSCHHHHH-----HHHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccHHHHHHHHHHc--c----HhhHHHHHHHHHcCChHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555578999888777777643 2 36677777777777777754 5899999999999999888877766
Q ss_pred hcccceEEeCCCCCchhhHHHHHHHHHHHh
Q 022423 112 SSLSSFEYVEPSGKDMGINVRKKAENIVAL 141 (297)
Q Consensus 112 ~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~L 141 (297)
.. .+.+.+.-..|.+-|++|++-
T Consensus 105 ~~-------~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 105 SS-------LEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HT-------CCCSSGGGHHHHHHHHHHHHH
T ss_pred Hh-------CCCcchHHHHHHHHHHHHHHH
Confidence 53 345667888899999998864
No 24
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=39.96 E-value=16 Score=34.26 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHHH
Q 022423 129 INVRKKAENIVALLNN-KDKIQEVRN 153 (297)
Q Consensus 129 ~nVR~KAk~I~~LL~D-~e~L~eER~ 153 (297)
..|++.+++|++++.. ++.|..-+.
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~~ 257 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIWN 257 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchhc
Confidence 4799999999999864 445555443
No 25
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=36.88 E-value=74 Score=28.86 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCH-hHHHHHHhhhhhhh---cccceEE--eCCCCCchhhHHH
Q 022423 59 SECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE-RAVDDIIEHTFQIS---SLSSFEY--VEPSGKDMGINVR 132 (297)
Q Consensus 59 ~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGse-rvV~e~r~~i~~I~---~L~~Fqy--~d~~GkD~G~nVR 132 (297)
++.+..|..+.-|-..- .==.++|.|.|+-+|.+||-- ...+|.+..-.-++ .|..+-. ..++|.++...=|
T Consensus 9 ~el~~~~~a~ma~A~~~--kDp~~~KlL~v~~W~~knGl~D~mynfs~~Dp~g~Km~r~ist~P~~a~kp~GPtq~~AQ~ 86 (242)
T 3zed_D 9 AELQGLLQATMARAKEV--KDAEVFKLLKLMSWTRKNDLTDHMYEWSKEDPDAIKFGRLVSTPPKHQEKPKGPDQHTAQE 86 (242)
T ss_pred HHHHHHHHHHHHHHhhc--cCHHHHHHHHHHHHHhccCHHHHHHHHHhhCccHHHHHHHhcCCccccCCCCCCCHHHHHH
Confidence 45666666666555420 112689999999999999953 33334444332111 1222211 1235666666556
Q ss_pred HHHHHHH
Q 022423 133 KKAENIV 139 (297)
Q Consensus 133 ~KAk~I~ 139 (297)
+||..|.
T Consensus 87 ~KAvRIS 93 (242)
T 3zed_D 87 AKATRIS 93 (242)
T ss_pred HHHHHHH
Confidence 5555443
No 26
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=29.91 E-value=58 Score=29.59 Aligned_cols=62 Identities=21% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCHHHHHHHHhhCCCCCCCCHHHHHH-HHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCH
Q 022423 25 VPEIEQKVLDATDNEPWGPHGTALAE-IAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSE 98 (297)
Q Consensus 25 ~se~E~kVrEATsnDpWGPt~s~M~E-IA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGse 98 (297)
+.+-|..||||+- +|.++++ |++++|+. +|.+.|..-|.+ --|...-.||.||--+.+.=++
T Consensus 3 me~~e~d~reala------tge~~~eii~~a~~d~----~~l~~lI~~LDD--DlwtV~kNAl~vi~~i~~~~~e 65 (253)
T 2db0_A 3 MEEEEFDIREALA------NGEHLEKILIMAKYDE----SVLKKLIELLDD--DLWTVVKNAISIIMVIAKTRED 65 (253)
T ss_dssp ------CHHHHHH------TTCSHHHHHHHHHHCH----HHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHhhhhHHHHHh------hhhhHHHHHHHHHhhH----HHHHHHHHHhcc--HHHHHHHhHHHHHHHHHHHhHH
Confidence 3467888999985 4566777 57888986 555666666665 4799999999999877766553
No 27
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=29.27 E-value=28 Score=27.53 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcC---------CCchHHHHHHHH
Q 022423 43 PHGTALAEIAQATKKFSECQMVMNVLWTRLAET---------GKDWRYVYKALA 87 (297)
Q Consensus 43 Pt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~---------gk~WR~IyKaL~ 87 (297)
++..+|..|=..+ ..+..-.+.||+++... +..||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~n---P~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEYN---HVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHhC---cccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 3666666665443 46667789999999742 479999998653
No 28
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=29.24 E-value=52 Score=26.06 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHc-CCHhHHHHHHhhhh---hhhcccceEEeCCCCCchhhHHHHHHH
Q 022423 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHTF---QISSLSSFEYVEPSGKDMGINVRKKAE 136 (297)
Q Consensus 61 ~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkN-GservV~e~r~~i~---~I~~L~~Fqy~d~~GkD~G~nVR~KAk 136 (297)
+..+-..|...|.-.. -.|.|||.+||-|-.= ... .-++.|.. .|+.|+.|. | ...||++|.
T Consensus 8 l~~L~~~ik~~L~~~~---~Dv~kcl~~L~~l~~l~~T~---~mL~rnpe~V~t~kklRry~-----g---~q~Ir~kA~ 73 (98)
T 2b4j_C 8 LQRIHAEIKNSLKIDN---LDVNRCIEALDELASLQVTM---QQAQKHTEMITTLKKIRRFK-----V---SQVIMEKST 73 (98)
T ss_dssp HHHHHHHHHHHTCTTS---CCHHHHHHHHHHHHTCCCCH---HHHHTTHHHHHHHHHHTTCT-----T---CHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---CCHHHHHHHHHHHhcccccH---HHHhhChHHHHHHHHHHHHh-----c---hHHHHHHHH
Confidence 4444555555554322 2467788888777543 221 12344444 445555653 2 278999999
Q ss_pred HHHH
Q 022423 137 NIVA 140 (297)
Q Consensus 137 ~I~~ 140 (297)
.|.+
T Consensus 74 ~iY~ 77 (98)
T 2b4j_C 74 MLYN 77 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 29
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=28.78 E-value=1.2e+02 Score=23.86 Aligned_cols=97 Identities=9% Similarity=0.085 Sum_probs=59.1
Q ss_pred HHHHHHHHc-CCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCC---HhHHHHHHhhhhhhhcccceEEeCC
Q 022423 47 ALAEIAQAT-KKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGS---ERAVDDIIEHTFQISSLSSFEYVEP 122 (297)
Q Consensus 47 ~M~EIA~~T-~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGs---ervV~e~r~~i~~I~~L~~Fqy~d~ 122 (297)
-.+.++.+. ++......|+++|.++|.....+ +-+-.|-|++-+|.|.. ..++..+..++..+-.. -|.-.+
T Consensus 22 sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~--~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~-~~~~~~- 97 (135)
T 4fu3_A 22 SVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSN--RKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSH-VAREAD- 97 (135)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTT--THHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHH-HHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHcCC-
Confidence 344444444 45677889999999999876554 33568889999988752 34666666655433110 011111
Q ss_pred CCCchhhHHHHHHHHHHHhhc-----ChHHHHHHHH
Q 022423 123 SGKDMGINVRKKAENIVALLN-----NKDKIQEVRN 153 (297)
Q Consensus 123 ~GkD~G~nVR~KAk~I~~LL~-----D~e~L~eER~ 153 (297)
..+|++..+|+++-. +++.|++-|.
T Consensus 98 ------~~~k~kl~kll~iW~~r~vf~~~~i~~L~~ 127 (135)
T 4fu3_A 98 ------EGCKKPLERLLNIWQERSVYGGEFIQQLKL 127 (135)
T ss_dssp ------TTSSHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhcCCCCcCHHHHHHHHH
Confidence 235777888887764 4566655554
No 30
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.39 E-value=1.3e+02 Score=25.07 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHc-----CCchhHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHHcCCHhH
Q 022423 32 VLDATDNEPWGPHGTALAEIAQAT-----KKFSECQMVMNVLWTRLA-ETGKDWRYVYKALAVIEYLISHGSERA 100 (297)
Q Consensus 32 VrEATsnDpWGPt~s~M~EIA~~T-----~~~~~~~~Im~vLwKRL~-d~gk~WR~IyKaL~LLEYLLkNGserv 100 (297)
+.+..++..|----..+..|+... .....|..|+..|.++|. + .+......++..|..|+......+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHhhhH
Confidence 344455667754444444443332 123568899999999995 6 577778889999999997655443
No 31
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=24.05 E-value=1.2e+02 Score=26.80 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhc-c--------cceEEeCCCCCchhhHHHHHHHHHHH
Q 022423 77 KDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISS-L--------SSFEYVEPSGKDMGINVRKKAENIVA 140 (297)
Q Consensus 77 k~WR~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~-L--------~~Fqy~d~~GkD~G~nVR~KAk~I~~ 140 (297)
.--+.+++.|-|++.|+.+|+..+|.|+.--...++. + -+...+. ..+.-..+++++.+|++
T Consensus 123 ~ia~~~~~~l~l~~~la~~GN~~aiSD~gvaa~l~~aAi~gA~lNV~INL~~ik--De~~~~~~~~e~~~l~~ 193 (214)
T 1o5h_A 123 DVIRVMKDLAHELEKLAEFGNKNLASDTLNAADLCHAVFQVEKVNVLINLKEIS--DETFRKNMLEELEEQEA 193 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999888766554441 1 1222221 12345577888877776
No 32
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=22.74 E-value=52 Score=27.28 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHc-CCHhHHHHHHhhhh---hhhcccceEEeCCCCCchhhHHHHHHH
Q 022423 61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISH-GSERAVDDIIEHTF---QISSLSSFEYVEPSGKDMGINVRKKAE 136 (297)
Q Consensus 61 ~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkN-GservV~e~r~~i~---~I~~L~~Fqy~d~~GkD~G~nVR~KAk 136 (297)
+..+-..|...|.-.. -.|.|||.+|+-|-.= .... -++.|.. .|+.|+.|. |- ..||++|.
T Consensus 8 L~~L~~~Ik~~L~v~~---~Dv~kCl~~Leel~~l~vT~~---mL~Rnpe~V~TlkklRrY~-----gn---q~Ir~kA~ 73 (127)
T 1z9e_A 8 LQRIHAEIKNSLKIDN---LDVNRCIEALDELASLQVTMQ---QAQKHTEMITTLKKIRRFK-----VS---QVIMEKST 73 (127)
T ss_dssp HHHHHHHHHHHTCGGG---CCHHHHHHHHHHHHHSCCCHH---HHGGGHHHHHHHHHHTTCT-----TC---SSHHHHHH
T ss_pred HHHHHHHHHHHHccCC---CCHHHHHHHHHHHccccccHH---HHhhChHHHHHHHHHHHHh-----cc---HHHHHHHH
Confidence 4445555555554321 2467888888877554 2222 2444544 445555553 21 68999999
Q ss_pred HHHH
Q 022423 137 NIVA 140 (297)
Q Consensus 137 ~I~~ 140 (297)
.|..
T Consensus 74 ~iY~ 77 (127)
T 1z9e_A 74 MLYN 77 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 33
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=22.67 E-value=5e+02 Score=25.31 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHH------HHHHHHHcCCchhHHHHHHHHHHHhhc--CCCch
Q 022423 8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTA------LAEIAQATKKFSECQMVMNVLWTRLAE--TGKDW 79 (297)
Q Consensus 8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~------M~EIA~~T~~~~~~~~Im~vLwKRL~d--~gk~W 79 (297)
.|.++=+...+.. +-+-++.-|+--..-=|+.-+.++ +.+|... -...+|..||.-|.+||.. ...+.
T Consensus 265 ~qL~ycv~qf~eK---Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~-~~~~ef~~i~~~lF~~la~ci~S~hf 340 (449)
T 2npp_B 265 PQLAYCVVQFLEK---DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV-IEPSEFVKIMEPLFRQLAKCVSSPHF 340 (449)
T ss_dssp HHHHHHHHHHHHH---CGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHhc---CcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444555532 444455556666655555555553 2234443 3678999999999999975 45688
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCC-CCchhhHHHHHHHHHHHhhcC
Q 022423 80 RYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPS-GKDMGINVRKKAENIVALLNN 144 (297)
Q Consensus 80 R~IyKaL~LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~-GkD~G~nVR~KAk~I~~LL~D 144 (297)
...-.||.+.. .+.++.-+.+|...|-.+ =|.-...+ -.-|-..||..|..++.+|.+
T Consensus 341 qVAErAL~~w~------N~~i~~li~~n~~~IlPi-i~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 341 QVAERALYYWN------NEYIMSLISDNAAKILPI-MFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHGGGG------CHHHHHHHHTTHHHHHHH-HHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC------CHHHHHHHHhchhhhHHh-hHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 88888887652 233444444444433210 01000011 134778999999999998765
Done!