Query 022424
Match_columns 297
No_of_seqs 234 out of 899
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 05:16:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 7E-127 2E-131 892.5 22.2 291 1-291 1-297 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 1E-125 4E-130 884.5 18.9 290 1-290 1-301 (301)
3 2zkr_n 60S ribosomal protein L 100.0 6E-125 2E-129 878.7 10.0 295 1-296 1-296 (297)
4 3iz5_Q 60S ribosomal protein L 100.0 3E-127 9E-132 896.1 -14.4 288 1-291 5-292 (304)
5 3j21_O 50S ribosomal protein L 100.0 8.3E-80 2.8E-84 551.9 4.1 195 11-251 2-197 (203)
6 1vq8_N 50S ribosomal protein L 100.0 1.1E-73 3.7E-78 507.0 11.9 184 11-251 2-185 (187)
7 3r8s_O 50S ribosomal protein L 100.0 4.7E-34 1.6E-38 236.4 6.7 108 30-172 9-116 (116)
8 1ovy_A 50S ribosomal protein L 100.0 5.6E-34 1.9E-38 237.4 4.7 110 27-172 11-120 (120)
9 3v2d_S 50S ribosomal protein L 100.0 4.6E-32 1.6E-36 223.5 8.7 104 29-172 9-112 (112)
10 2zjr_L 50S ribosomal protein L 100.0 2.8E-32 9.7E-37 225.4 0.1 105 29-172 8-114 (114)
11 3bbo_Q Ribosomal protein L18; 100.0 5.7E-30 1.9E-34 222.5 0.2 110 28-172 49-161 (161)
12 4gmn_B 60S ribosomal protein L 99.9 6.3E-25 2.2E-29 155.3 1.3 43 1-43 1-43 (49)
13 3j20_M 30S ribosomal protein S 95.9 0.031 1.1E-06 47.3 8.4 108 47-182 13-131 (137)
14 2vqe_K 30S ribosomal protein S 95.5 0.038 1.3E-06 46.2 7.3 101 46-181 14-123 (129)
15 3r8n_K 30S ribosomal protein S 94.9 0.061 2.1E-06 44.2 6.7 101 46-181 4-113 (117)
16 2xzm_K RPS14E; ribosome, trans 94.6 0.037 1.3E-06 47.5 4.9 106 48-181 28-144 (151)
17 3bbn_K Ribosomal protein S11; 94.5 0.048 1.6E-06 46.3 5.2 101 46-181 27-136 (140)
18 3u5c_O RP59A, 40S ribosomal pr 93.2 0.071 2.4E-06 45.1 4.0 104 48-181 14-130 (137)
19 1w53_A Phosphoserine phosphata 54.5 17 0.00059 28.1 4.7 45 203-249 15-61 (84)
20 3v7n_A Threonine synthase; ssg 49.0 9.3 0.00032 37.9 2.9 62 160-244 24-86 (487)
21 4hyz_A Uncharacterized protein 46.2 29 0.00099 27.4 4.9 52 188-245 10-61 (114)
22 4f4f_A Threonine synthase; str 42.2 8.3 0.00028 37.9 1.4 100 160-281 23-124 (468)
23 2j6y_A Phosphoserine phosphata 39.9 38 0.0013 27.5 4.8 29 221-251 32-61 (111)
24 2r80_A Hemoglobin subunit alph 39.5 40 0.0014 26.9 4.9 71 173-248 37-111 (141)
25 1y6z_A Heat shock protein, put 32.9 11 0.00037 34.6 0.5 68 161-234 96-166 (263)
26 2gq0_A Chaperone protein HTPG; 32.0 17 0.00057 34.2 1.6 35 199-233 124-161 (303)
27 1vb3_A Threonine synthase; PLP 31.0 28 0.00097 33.2 3.1 95 160-280 18-113 (428)
28 2zs0_A Extracellular giant hem 29.3 78 0.0027 25.0 5.0 72 173-248 40-117 (140)
29 3ra3_A P1C; coiled coil domain 28.9 46 0.0016 20.6 2.7 16 273-288 12-27 (28)
30 1x9f_D Globin C, hemoglobin ch 28.8 84 0.0029 24.7 5.1 72 173-248 40-117 (140)
31 2zs0_C Extracellular giant hem 28.7 75 0.0026 25.3 4.9 72 173-248 44-122 (147)
32 1yhu_D Hemoglobin B2 chain; gl 27.5 1E+02 0.0035 24.5 5.5 72 173-248 44-122 (149)
33 1y4s_A Chaperone protein HTPG; 27.1 39 0.0013 34.1 3.4 36 199-234 352-390 (559)
34 3d1k_A Hemoglobin subunit alph 25.8 98 0.0033 24.4 5.0 71 173-248 37-112 (142)
35 2w72_C Human hemoglobin A; iro 25.2 95 0.0032 24.4 4.8 72 173-249 37-112 (141)
36 3pry_A Heat shock protein HSP 23.9 31 0.0011 31.8 1.8 34 199-233 126-162 (268)
37 1gcv_B Hemoglobin; oxygen stor 23.7 98 0.0034 24.7 4.6 68 173-248 36-106 (136)
38 3bom_A Hemoglobin subunit alph 22.2 1.1E+02 0.0036 24.3 4.6 71 173-248 38-113 (143)
39 2ke4_A CDC42-interacting prote 21.8 36 0.0012 26.8 1.6 22 270-291 10-31 (98)
40 1jeb_A Hemoglobin zeta chain; 21.0 1.2E+02 0.0042 23.7 4.7 71 173-248 38-112 (142)
41 3ubc_A Hemoglobin-like flavopr 21.0 1.6E+02 0.0055 22.6 5.3 65 173-248 36-104 (131)
42 1c7c_A Protein (deoxyhemoglobi 20.9 1.1E+02 0.0038 27.1 4.8 72 173-249 37-112 (283)
43 2zs0_B Extracellular giant hem 20.8 1.8E+02 0.0062 22.8 5.7 72 173-248 40-117 (142)
44 2xrh_A Protein HP0721; unknown 20.6 1.1E+02 0.0037 24.5 4.2 42 207-248 42-86 (100)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=6.9e-127 Score=892.51 Aligned_cols=291 Identities=55% Similarity=0.909 Sum_probs=281.1
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 022424 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (297)
Q Consensus 1 m~fvk~~knkay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (297)
|+|||||||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCC-CCCCceEEEeecCCcccCCCceE
Q 022424 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (297)
Q Consensus 81 ~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (297)
+||+.+||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||++| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred eeecccccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 022424 160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELY 239 (297)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y 239 (297)
||||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+||+||+||
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~~e~~y 240 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY 240 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHTTCCGGGHHHHH
T ss_pred hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHcCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCCCC-----cccccCCCCCCCHHHHHHHHHHHHHHHhhcc
Q 022424 240 KKVHAAIRADPNQKKSEKKPP-----AEHKRYNLKKLTYEERKARLVERLKALNAAE 291 (297)
Q Consensus 240 ~~~~~~I~~~p~~~~~~k~~~-----~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~ 291 (297)
++||++||+||++++++++.. ..+|+||++|||++||++||+||+++|.+.+
T Consensus 241 ~~~h~~Ir~~P~~~k~~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~ 297 (297)
T 3u5e_D 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297 (297)
T ss_dssp HHHHHHHHHCCSCCCCCCSSCHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHhCcccccccccccccccchhccccCcccCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999998877665432 4578999999999999999999999998753
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=1.3e-125 Score=884.48 Aligned_cols=290 Identities=50% Similarity=0.830 Sum_probs=280.2
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 022424 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (297)
Q Consensus 1 m~fvk~~knkay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (297)
|+|||||||+|||+||||||||||||||||++|++||+|||||||+|+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCC-CCCCceEEEeecCCcccCCCceE
Q 022424 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (297)
Q Consensus 81 ~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (297)
+||+.+||+++++|++|||+||+|||+|||++||||++|+|++++||++|+||++| +|+||+||||+||+|||+|||||
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred eeecccccCCccccCCCcccCCCCCCc-----ccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHc--CCCc
Q 022424 160 GALKGALDGGLDIPHSEKRFAGFSKDS-----KQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKR--GIEA 232 (297)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~-----k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~--gi~~ 232 (297)
||||||+||||+||||+++|||||.|+ ++||||+|++||+|+|||+||++|+|||||+|++|||+||++ ||+|
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~ 240 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV 240 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence 999999999999999999999999987 999999999999999999999999999999999999999999 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCCcCCCC---CCcccccCCCCCCCHHHHHHHHHHHHHHHhhc
Q 022424 233 DNLEELYKKVHAAIRADPNQKKSEKK---PPAEHKRYNLKKLTYEERKARLVERLKALNAA 290 (297)
Q Consensus 233 ~~ie~~y~~~~~~I~~~p~~~~~~k~---~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~ 290 (297)
|+||+||++||++||+||++++++++ ++..+|+|+++|||++||++||+||+++|.++
T Consensus 241 ~~~e~~y~~~h~~Ir~~p~~~k~~~~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~ 301 (301)
T 4a17_M 241 DSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301 (301)
T ss_dssp SCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCHHHHHHSCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhCccccccccccccccccccccCcccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998877665 34567899999999999999999999998753
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.1e-125 Score=878.67 Aligned_cols=295 Identities=56% Similarity=0.938 Sum_probs=233.2
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 022424 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (297)
Q Consensus 1 m~fvk~~knkay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (297)
|+||||+||+|||+||||||||||||||||++|++||+||+||||||+||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCC-CCCCceEEEeecCCcccCCCceE
Q 022424 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (297)
Q Consensus 81 ~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~-~~~~f~~vlD~Gl~r~t~G~RVf 159 (297)
+||+++||+++++|++||||||+|||+|||++||||++|+|++++|||+|+||+.+ +|+||+||||+||++||+|||||
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred eeecccccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHH
Q 022424 160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELY 239 (297)
Q Consensus 160 aa~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y 239 (297)
|+|+||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+|++||+||
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y 240 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCC
Q 022424 240 KKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALNAAEDDEDD 296 (297)
Q Consensus 240 ~~~~~~I~~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~~~~~~ 296 (297)
++||++|++||+++++++++.+ +|+||++|||++||++||+||+++++..++++++
T Consensus 241 ~~~~~~Ir~~P~~~~~~k~~~~-~k~~~~~klt~~qrk~rv~~k~~~~~~~~~~~~~ 296 (297)
T 2zkr_n 241 KKAHAAIRENPVYEKKPKKEVK-KKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296 (297)
T ss_dssp HHHHHHC--------------------------------------------------
T ss_pred HHHHHHHHhCCCcccccccccc-cccccccccChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999998888776654 4899999999999999999999999976555443
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=2.6e-127 Score=896.15 Aligned_cols=288 Identities=78% Similarity=1.240 Sum_probs=281.2
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 022424 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (297)
Q Consensus 1 m~fvk~~knkay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS 80 (297)
|||||||||+|||+|||||||||||||||||+|++||+|||||||||+|||| ||+|||||||++.++||+|||||||
T Consensus 5 ~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS 81 (304)
T 3iz5_Q 5 GGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYS 81 (304)
T ss_dssp SSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEET
T ss_pred cceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999 9999999999998999999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEe
Q 022424 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFG 160 (297)
Q Consensus 81 ~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfa 160 (297)
+||+++||+++++|++||||||+|||+|||++||||++|+|++++||++|+||++++|+||+||||+||+|||+||||||
T Consensus 82 ~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfa 161 (304)
T 3iz5_Q 82 HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFG 161 (304)
T ss_dssp TTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHH
T ss_pred CchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccccCCCCCceEEEecCCcccccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999966899999999999999999999999
Q ss_pred eecccccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHH
Q 022424 161 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYK 240 (297)
Q Consensus 161 a~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y~ 240 (297)
|||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||++|+|||||+|++|||+||++||+|++||+||+
T Consensus 162 alKGA~DgGL~IPhs~~~fpg~d~e~k~~~aev~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~le~~y~ 241 (304)
T 3iz5_Q 162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYK 241 (304)
T ss_dssp HHHHHHTTTCCCCCCSSSCCCGGGTSSCCCCSSSCCSCSSSSTHHHHHSCCCCCSSCCSHHHHHHHHHHHSCCCCCCCCC
T ss_pred eeccccccCcccCCCcccccCccccccccCHHHHHHHHcCccHHHHHHhccccCHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhcc
Q 022424 241 KVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALNAAE 291 (297)
Q Consensus 241 ~~~~~I~~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~~k~~~~~~~~ 291 (297)
+||++||+||+++++++++++.+|+||++|||++||++||+||+++|.++.
T Consensus 242 ~~h~~Ir~~P~~~k~~~~~~~~~k~~~~~klt~~qrk~~v~~k~~~~~~~~ 292 (304)
T 3iz5_Q 242 KVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292 (304)
T ss_dssp CCCCSCSCCHHHHHHCSCCCSHHHHHHHHHHHHHHHTTCSCCSSSCCCSCC
T ss_pred HHHHHHHhCccccccCCCccccccccCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877776666789999999999999999999999998875
No 5
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.3e-80 Score=551.89 Aligned_cols=195 Identities=38% Similarity=0.600 Sum_probs=188.9
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccc-ccccc
Q 022424 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLE 89 (297)
Q Consensus 11 ay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~-~~g~k 89 (297)
|-.+|||||||||||||||||+|++|++|+ +||||||+||+|||||||+++++||+|||||||+||+ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~-------kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSG-------KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTC-------CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcC-------CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 568999999999999999999999999998 7999999999999999999777999999999999999 79999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCC
Q 022424 90 VGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGG 169 (297)
Q Consensus 90 ~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgG 169 (297)
.+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|||
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~y~~hgRV~Ala~gAre~G 128 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA--------GIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAG 128 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS--------CCCC------------------CEEECCSSCCCTTSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC--------CCCE------------------EEEecCcceeccCcchhhhhhhcccCC
Confidence 99999999999999999999999 9987 999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcC
Q 022424 170 LDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRAD 249 (297)
Q Consensus 170 L~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y~~~~~~I~~~ 249 (297)
|+||||+++|||+ +||+|+|||+||++|+|||||+|++|||+||++||+|++||+||++||++|++.
T Consensus 129 L~iPhs~~~fp~~-------------~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~~~~~~~~~~~~~~~~~~I~~~ 195 (203)
T 3j21_O 129 LNVPHSPEIFPDE-------------YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVKGLDPEKLPEHFEEVKARIIEK 195 (203)
T ss_dssp CCCCCCSSCSCCH-------------HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCCSSSSSCCHHHHHHHHTTCTTT
T ss_pred eecccCCccCCCc-------------ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999994 799999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 022424 250 PN 251 (297)
Q Consensus 250 p~ 251 (297)
..
T Consensus 196 ~~ 197 (203)
T 3j21_O 196 FE 197 (203)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=1.1e-73 Score=507.01 Aligned_cols=184 Identities=37% Similarity=0.576 Sum_probs=176.9
Q ss_pred cccccccccchhhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccccccccc
Q 022424 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEV 90 (297)
Q Consensus 11 ay~~ryqvk~rRRRegkTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~ 90 (297)
|..+|||||||||||||||||+|++|+.++ +|||+||+||+|||||||+++.+||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~-------rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcC-------CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 568999999999999999999999999998 7999999999999999997777899999999999999889987
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCc
Q 022424 91 GLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGL 170 (297)
Q Consensus 91 g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL 170 (297)
+++|++|||+||+|||+|||++ ||++ ||||+|+++||+||||||+|+||+|+||
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~yh~GgRV~Ala~gAre~GL 128 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL 128 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHC--------CCCE------------------EEEcCCCceeccchHHHHHHHHhhcCCE
Confidence 8999999999999999999999 9998 9999999999999999999999999999
Q ss_pred cccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHHHhcCC
Q 022424 171 DIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADP 250 (297)
Q Consensus 171 ~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y~~~~~~I~~~p 250 (297)
+||||+++|||| +||+|+|||+||++|. | +||++||+|++||+||++||++|++||
T Consensus 129 ~fph~~~~fp~~-------------~ri~G~hva~y~~~l~---~--------~y~~~~~~~~~l~~~~~~~~~~I~~~p 184 (187)
T 1vq8_N 129 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLE---E--------PLYSGDFDAADLPEHFDELRETLLDGD 184 (187)
T ss_dssp BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS---S--------CSSSSCSCSSCCHHHHHHHHHHHHSSS
T ss_pred eccCCCccCCCC-------------ceeccEEHHHHHHHhh---H--------HHHHCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999995 7999999999999993 2 899999999999999999999999999
Q ss_pred C
Q 022424 251 N 251 (297)
Q Consensus 251 ~ 251 (297)
+
T Consensus 185 ~ 185 (187)
T 1vq8_N 185 I 185 (187)
T ss_dssp S
T ss_pred C
Confidence 6
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=4.7e-34 Score=236.44 Aligned_cols=108 Identities=28% Similarity=0.224 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHH
Q 022424 30 YRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRV 109 (297)
Q Consensus 30 Y~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ra 109 (297)
.+.|.|..+.+ +++|||+|++||+|||||||++ +||+|||||||+|++.++|..+++|++|||+||+|||+|+
T Consensus 9 r~~r~R~ki~~-----~~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ra 81 (116)
T 3r8s_O 9 RATRARRKLQE-----LGATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERA 81 (116)
T ss_dssp HHHHHHHHHHT-----TTCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-----CCCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHH
Confidence 34555555554 5699999999999999999985 6889999999999999999889999999999999999999
Q ss_pred HhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCccc
Q 022424 110 LKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (297)
Q Consensus 110 l~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (297)
+++ ||++ ++||+|+++|| |||+|+++||+|+||+.
T Consensus 82 l~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 82 LEK--------GIKD------------------VSFDRSGFQYH--GRVQALADAAREAGLQF 116 (116)
T ss_dssp HTT--------TCCC------------------CEEECTTSCSS--SHHHHHHHHHHHTTCCC
T ss_pred HHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHhCCCC
Confidence 999 9998 99999999997 79999999999999973
No 8
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.98 E-value=5.6e-34 Score=237.39 Aligned_cols=110 Identities=30% Similarity=0.312 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHH
Q 022424 27 KTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLA 106 (297)
Q Consensus 27 kTdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA 106 (297)
+...+.|.|..++++ +++|||+|++||+|||||||++ +||+|||||||+|++ ++ ..+++|++|||+||+|||
T Consensus 11 r~~r~~R~r~ki~gt----~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~llA 82 (120)
T 1ovy_A 11 RKKRHARIRKKIFGT----TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGELVA 82 (120)
T ss_dssp -------------CC----SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC----CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHHHH
Confidence 445567888888886 7799999999999999999986 699999999999998 45 346899999999999999
Q ss_pred HHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCccc
Q 022424 107 RRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (297)
Q Consensus 107 ~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (297)
+|++++ ||++ |+||+|+++|| |||+|+++||+|+||++
T Consensus 83 ~Ral~~--------GI~~------------------vvfDrgg~~yh--grV~ala~~are~GL~f 120 (120)
T 1ovy_A 83 KRALEK--------GIKQ------------------VVFDRGGYLYH--GRVKALADAAREAGLEF 120 (120)
T ss_dssp HHHHHH--------SSSC------------------CCCCSTTCSSC--SSTHHHHHHHHHHHCCC
T ss_pred HHHHHC--------CCCE------------------EEEecCCcccc--HHHHHHHHHHHHhCCcC
Confidence 999999 9998 99999999996 79999999999999974
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.97 E-value=4.6e-32 Score=223.54 Aligned_cols=104 Identities=30% Similarity=0.315 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHH
Q 022424 29 DYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARR 108 (297)
Q Consensus 29 dY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~R 108 (297)
..+.|.|..+.+ +++|||+|++||+|||||||++ +||+|||||||+|++. + ++|++|||+||+|||+|
T Consensus 9 ~r~~r~r~ki~g-----t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~llA~r 76 (112)
T 3v2d_S 9 RRKFRVRNRIKR-----TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRALAEK 76 (112)
T ss_dssp HHHHHHHHHHHH-----TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHHHHHH
Confidence 345566666666 4599999999999999999985 6899999999999973 2 68999999999999999
Q ss_pred HHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCccc
Q 022424 109 VLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (297)
Q Consensus 109 al~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (297)
++++ ||++ ++||+|+++|| |||+|+++||+|+||+.
T Consensus 77 a~~~--------GI~~------------------vvfDrgg~~yh--GrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 77 ALAL--------GIKQ------------------VAFDRGPYKYH--GRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHTT--------TCCB------------------CEEECTTSCSC--SSTTHHHHHHHHTTCBC
T ss_pred HHHC--------CCCE------------------EEEecCCCccc--HHHHHHHHHHHHcCCCC
Confidence 9999 9998 99999999997 79999999999999974
No 10
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.97 E-value=2.8e-32 Score=225.42 Aligned_cols=105 Identities=28% Similarity=0.287 Sum_probs=91.9
Q ss_pred hHHHHHHHHHhCCCCCC--CCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHH
Q 022424 29 DYRARIRLINQDKNKYN--TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLA 106 (297)
Q Consensus 29 dY~~R~rli~qdknky~--s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA 106 (297)
..+.|.|-.++++ + +++|||+|++||+|||||||++ +||+|||||||+|| .+++|++|||+||+|||
T Consensus 8 ~r~~r~r~ki~gt---~~~~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~llA 76 (114)
T 2zjr_L 8 RRKLRTRRKVRTT---TAASGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKALA 76 (114)
T ss_dssp CHHHHHHHHHHSC---STTTCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHHHH
T ss_pred HHHHHHHhhhccc---cCCCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHHHH
Confidence 3466777777773 3 6799999999999999999976 69999999999996 25789999999999999
Q ss_pred HHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCccc
Q 022424 107 RRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (297)
Q Consensus 107 ~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (297)
+|++++ ||++ |+||+|+++|| |||+|+++||+|+||++
T Consensus 77 ~Ral~~--------GI~~------------------vvfDrgg~~yh--grV~Ala~~are~GL~f 114 (114)
T 2zjr_L 77 AAAAEK--------GIKQ------------------VVFDRGSYKYH--GRVKALADAAREGGLDF 114 (114)
T ss_dssp HHHHTT--------CCCC------------------CEECCCSSCSC--SHHHHHHHHHHHHC---
T ss_pred HHHHHC--------CCCE------------------EEEecCCcccc--HHHHHHHHHHHHhCCcC
Confidence 999999 9998 99999999996 79999999999999974
No 11
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.95 E-value=5.7e-30 Score=222.45 Aligned_cols=110 Identities=24% Similarity=0.218 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccc---ccccccCCCcHHHHHHHHHH
Q 022424 28 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP---RYGLEVGLTNYAAAYCTGLL 104 (297)
Q Consensus 28 TdY~~R~rli~qdknky~s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~---~~g~k~g~~N~~AAy~tGlL 104 (297)
...+.|.|..+.++ +.+|||+|++||+||||||||+ .+++||+||||.|.+ .++| +.++|++||++||.+
T Consensus 49 ~rR~~RiR~ki~gt----~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~VG~l 121 (161)
T 3bbo_Q 49 TARHVRIRKKVEGT----PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKKVGEV 121 (161)
T ss_dssp GGTSCCSCSGGGGS----SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhccC----CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHHHHHH
Confidence 34455666677775 6699999999999999999987 588999999998754 2445 467899999999999
Q ss_pred HHHHHHhhhcccccccCcccccCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCccc
Q 022424 105 LARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDI 172 (297)
Q Consensus 105 lA~Ral~k~~l~~~y~Gi~e~~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~I 172 (297)
||+|++++ ||++ ||||+|+++|| |||+|+++||+|+||+.
T Consensus 122 iAeRA~e~--------GI~~------------------VvFDRgg~~Yh--GRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 122 IASACLEK--------GITK------------------VAFDRGGYPYH--GRVKALADAAREKGLQF 161 (161)
T ss_dssp SSSHHHHT--------SSCC------------------CCCCCSSSCSS--STTHHHHHHHTTTTCCC
T ss_pred HHHHHHHC--------CCCE------------------EEEeCCCCcch--HHHHHHHHHHHHhCCcC
Confidence 99999999 9998 99999999998 69999999999999974
No 12
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.89 E-value=6.3e-25 Score=155.32 Aligned_cols=43 Identities=60% Similarity=0.930 Sum_probs=41.7
Q ss_pred CcceeeecCccccccccccchhhccCchhHHHHHHHHHhCCCC
Q 022424 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNK 43 (297)
Q Consensus 1 m~fvk~~knkay~~ryqvk~rRRRegkTdY~~R~rli~qdknk 43 (297)
||||||+||+|||+||||+|||||||||||++|++||.|||+.
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKas 43 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKGS 43 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999854
No 13
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.90 E-value=0.031 Score=47.26 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=75.8
Q ss_pred CcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCccccc
Q 022424 47 PKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEAT 126 (297)
Q Consensus 47 ~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~ 126 (297)
+..-+-|+-|-+++++.|.|. .|..||+.+|+-..-..|-. -...-||++++.-+|+++++. |++.+.
T Consensus 13 ~~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~--------Gi~~v~ 80 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK--------GIVGVH 80 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH--------TEEEEE
T ss_pred cceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc--------CCeEEE
Confidence 356677889999999999996 58679988887766444332 235668999999999999999 987622
Q ss_pred CccccccCCCCCCCceEEEee-cCCcccC-CCceEeeecccccCCcc---------ccCCCcccCCC
Q 022424 127 GEDYSVEPTENRRPFRALLDV-GLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAGF 182 (297)
Q Consensus 127 g~~~~ve~~~~~~~f~~vlD~-Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpgy 182 (297)
+.|-- |+.++.+ |.---+|+++...+||. |||+-.|-||-
T Consensus 81 ----------------V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~ 131 (137)
T 3j20_M 81 ----------------IRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG 131 (137)
T ss_dssp ----------------EEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred ----------------EEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence 44422 3333321 22124567777778887 69999999984
No 14
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=95.48 E-value=0.038 Score=46.16 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccc
Q 022424 46 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (297)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~ 125 (297)
-+...+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -...-||+.++..+|+++.+. |+..+
T Consensus 14 ~~~gi~hI~as~NNTivtiTd~--~G-~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 80 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY--------GMQSV 80 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEECT--TS-CEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT--------TCCEE
T ss_pred ccceEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh--------CCeEE
Confidence 4568899999999999999996 57 67877777766543432 346789999999999999998 88762
Q ss_pred cCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCcc---------ccCCCcccCC
Q 022424 126 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (297)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (297)
. ++| .|. +-|| .+++++....||. |||+-.|-|.
T Consensus 81 ~----------------V~v-kG~----G~Gr-e~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K 123 (129)
T 2vqe_K 81 D----------------VIV-RGT----GAGR-EQAIRALQASGLQVKSIVDDTPVPHNGCRPKK 123 (129)
T ss_dssp E----------------EEE-ESC----CTTH-HHHHHHHHTSSSEEEECEECCCCCSSCSCCCG
T ss_pred E----------------EEE-ECC----CCCH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1 333 232 2244 4678888888986 7999988886
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=94.88 E-value=0.061 Score=44.18 Aligned_cols=101 Identities=18% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccc
Q 022424 46 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (297)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~ 125 (297)
-+.--+-|+-|-+++++.|.|. .| .+|+.+|+-.+...|-. -...-||++++.-+++++++. |++.+
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 70 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDR--QG-NALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY--------GIKNL 70 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TS-CCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS--------CCCEE
T ss_pred cceeEEEEEcccCCEEEEEEcC--CC-CEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh--------CCcEE
Confidence 3445566888999999999996 57 58888887766544433 235668899999999999998 88762
Q ss_pred cCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCcc---------ccCCCcccCC
Q 022424 126 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (297)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (297)
. ++| .|. +-|| -+++++....||. |||+-.|-|.
T Consensus 71 ~----------------v~v-kG~----G~Gr-~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K 113 (117)
T 3r8n_K 71 E----------------VMV-KGP----GPGR-ESTIRALNAAGFRITNITDVTPIPHNGCRPPK 113 (117)
T ss_dssp E----------------EEE-ECS----SSST-THHHHHHHHTTCEEEEEEECCCCCSSCSCCCC
T ss_pred E----------------EEE-eCC----CccH-HHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCC
Confidence 1 444 232 2133 4567777778887 5999888875
No 16
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=94.56 E-value=0.037 Score=47.50 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=73.8
Q ss_pred cceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccC
Q 022424 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATG 127 (297)
Q Consensus 48 KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~~g 127 (297)
..-+-|+-|-+++++.|.|. .|..|+++++.-..-+.+-. -...-||.+++.-+|+++++. |++.+.
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r~--ksTpyAAq~aa~~~a~~a~e~--------Gi~~v~- 94 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADRE--ESSPYAAMQAAIDVVNRCKEL--------KINALH- 94 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGGG--GSCHHHHHHHHHHHHHHHHHH--------TCCEEE-
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCCC--cCCHHHHHHHHHHHHHHHHHc--------CCeEEE-
Confidence 46788899999999999996 58777777655432222211 235668899999999999999 887621
Q ss_pred ccccccCCCCCCCceEEE-eecCCcccC-CCceEeeecccccCCcc---------ccCCCcccCC
Q 022424 128 EDYSVEPTENRRPFRALL-DVGLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (297)
Q Consensus 128 ~~~~ve~~~~~~~f~~vl-D~Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (297)
+.| ..|+.++.+ |.--.+|+++...+||. |||+-.|-|+
T Consensus 95 ---------------V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K 144 (151)
T 2xzm_K 95 ---------------IKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG 144 (151)
T ss_dssp ---------------EEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred ---------------EEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence 444 245555433 22235677887788987 7999999887
No 17
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=94.46 E-value=0.048 Score=46.29 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccc
Q 022424 46 TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (297)
Q Consensus 46 s~KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~ 125 (297)
-+..-+-|+-|-+++++.|.|. .| .+++.+|+-.+...|-. -...-||+.++.-+|+++.+. |+..+
T Consensus 27 ~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~--------Gi~~v 93 (140)
T 3bbn_K 27 IPKGVIHVQASFNNTIVTVTDV--RG-RVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ--------GMQRA 93 (140)
T ss_dssp CCCCEEEEEECSSCEEEEEECS--SS-CEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT--------CCCEE
T ss_pred ceeeEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh--------CCeEE
Confidence 4568999999999999999996 57 67887887666543432 356788899999999999888 88751
Q ss_pred cCccccccCCCCCCCceEEEeecCCcccCCCceEeeecccccCCcc---------ccCCCcccCC
Q 022424 126 TGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (297)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vlD~Gl~r~t~G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (297)
. ++| .|. +-|| .+++++....||. |||+-.|-|.
T Consensus 94 ~----------------V~v-kG~----G~GR-eaairaL~~~Gl~I~~I~DvTpiPhnGcRppK 136 (140)
T 3bbn_K 94 E----------------VMI-KGP----GLGR-DAALRAIRRSGILLSFVRDVTPMPHNGCRPPK 136 (140)
T ss_dssp E----------------EEE-ESC----STTS-SHHHHHHHTTTCEEEEEEECCCCCCSCCCCCC
T ss_pred E----------------EEE-ECC----CCcH-HHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1 333 231 2244 3678888888976 7999888885
No 18
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=93.22 E-value=0.071 Score=45.08 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=69.5
Q ss_pred cceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCC--CcHHHHHHHHHHHHHHHHhhhcccccccCcccc
Q 022424 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGL--TNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (297)
Q Consensus 48 KpRLvVrrTNkhI~aQII~~~~~GD~tLasAsS~EL~~~g~k~g~--~N~~AAy~tGlLlA~Ral~k~~l~~~y~Gi~e~ 125 (297)
..-+-|+-|-+++++.|.|. .|..+++ .||--+ |++++. ...-||.+++..+|+++++. |++.+
T Consensus 14 ~gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~---gfKg~r~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v 79 (137)
T 3u5c_O 14 FGVARIYASFNDTFVHVTDL--SGKETIA-RVTGGM---KVKADRDESSPYAAMLAAQDVAAKCKEV--------GITAV 79 (137)
T ss_dssp EEECCEEEETTEEEECCEET--TSSSCCC-CCBTTT---TSCCSTTTTCHHHHHHHHHHHHHHHHHH--------TCCEE
T ss_pred eEEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCc---EEeCCcccCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 34556889999999999996 5855444 444444 333322 45568899999999999999 98762
Q ss_pred cCccccccCCCCCCCceEEE-eecCCcccC-CCceEeeecccccCCcc---------ccCCCcccCC
Q 022424 126 TGEDYSVEPTENRRPFRALL-DVGLVKTTT-GNRVFGALKGALDGGLD---------IPHSEKRFAG 181 (297)
Q Consensus 126 ~g~~~~ve~~~~~~~f~~vl-D~Gl~r~t~-G~RVfaa~KGA~DgGL~---------IPh~~~~fpg 181 (297)
. +.| -.|+.++.+ |-==-+|+++...+||. |||+-.|-|+
T Consensus 80 ~----------------V~vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K 130 (137)
T 3u5c_O 80 H----------------VKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG 130 (137)
T ss_dssp E----------------CEEECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred E----------------EEEeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence 1 444 234444422 11124577777778987 6999999887
No 19
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=54.49 E-value=17 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=32.6
Q ss_pred HHHHHHHhcccChHHH-HhhHHHH-HHcCCCcchHHHHHHHHHHHHhcC
Q 022424 203 VAAYMRTLMEDEPEKY-QSHFCEY-IKRGIEADNLEELYKKVHAAIRAD 249 (297)
Q Consensus 203 Va~Ym~~L~eed~e~y-k~qFS~y-ik~gi~~~~ie~~y~~~~~~I~~~ 249 (297)
+.+|+..-.| .-.| ..+||+. |+.+|.||+|-.+.+++...+--+
T Consensus 15 L~~yl~~~~E--~~Ly~~q~fs~~~iek~i~PEeiV~iHk~~i~el~~~ 61 (84)
T 1w53_A 15 LSRYIAELTE--TSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKELYPS 61 (84)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccH--HHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4566655444 2333 4579986 578999999999999999988444
No 20
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}
Probab=48.97 E-value=9.3 Score=37.88 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=41.8
Q ss_pred eeecc-cccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 022424 160 GALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL 238 (297)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~ 238 (297)
|++.| |.||||.||.+ +|-++ ++.+. .+.+.. =+|.-..-+|.|| ..|++++|..|
T Consensus 24 a~l~Gla~DgGLyvP~~---~P~~~-------~~~~~-~~~~~s-----------y~ela~~il~~f~-~~i~~~~l~~~ 80 (487)
T 3v7n_A 24 ILLGGLAKDGGLYLPSE---YPQVS-------ADELA-RWRTLP-----------YADLAFEILSKFC-DDIAAADLRAI 80 (487)
T ss_dssp HTTCCCCTTSCCEEESS---CCCCC-------HHHHH-HHTTCC-----------HHHHHHHHHHHHC-SSSCHHHHHHH
T ss_pred HHHhCCCCCCceEcCcc---CCCCC-------HHHHH-HHhCCC-----------HHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 57888 89999999985 55432 22221 122222 2334445678888 88999999999
Q ss_pred HHHHHH
Q 022424 239 YKKVHA 244 (297)
Q Consensus 239 y~~~~~ 244 (297)
-.++-.
T Consensus 81 i~~ay~ 86 (487)
T 3v7n_A 81 TRRTYT 86 (487)
T ss_dssp HHHHSC
T ss_pred HHHHhC
Confidence 988875
No 21
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=46.23 E-value=29 Score=27.36 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=45.2
Q ss_pred cCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHHHHHHHHH
Q 022424 188 QLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAA 245 (297)
Q Consensus 188 ~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~y~~~~~~ 245 (297)
.||.+.+.+ +-.+++..|.++|=+.-...||.=++..++++.|+ +++.+...
T Consensus 10 ~fde~~v~~-----~A~~~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~ 61 (114)
T 4hyz_A 10 GFDKETVRK-----QAMEDIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEK 61 (114)
T ss_dssp TCCHHHHHH-----HHHHHHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHT
T ss_pred hhhHHHHHH-----HHHHHHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHh
Confidence 588887776 67799999999999999999999999999999999 98876553
No 22
>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}
Probab=42.22 E-value=8.3 Score=37.88 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=58.8
Q ss_pred eeecc-cccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 022424 160 GALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL 238 (297)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~ 238 (297)
|++.| |.||||.||.+ +|-++ ++.++ .+.+..- +|.-..-+|.||...|++++|.+|
T Consensus 23 a~l~gla~dgGLy~P~~---~p~~~-------~~~~~-~~~~~sy-----------~~~a~~i~~~f~~~~i~~~~l~~~ 80 (468)
T 4f4f_A 23 ALLAGLARDGGLYLPQE---YPQFT-------AEQIR-ALRGKSY-----------VEVALAVLTPFTGGEIPAADFERM 80 (468)
T ss_dssp HHHHCSCTTSCCEEESS---CCCCC-------HHHHH-TTTTCCH-----------HHHHHHHHGGGGTTCSCHHHHHHH
T ss_pred HHHhCCCCCCceEcCcc---CCCCC-------HHHHH-HHhCCCH-----------HHHHHHHHHHHhcCCCCHHHHHHH
Confidence 57888 89999999985 55432 22222 2222222 334444677788778999999999
Q ss_pred HHHHHHHHh-cCCCCCcCCCCCCcccccCCCCCCCHHHHHHHHH
Q 022424 239 YKKVHAAIR-ADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLV 281 (297)
Q Consensus 239 y~~~~~~I~-~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv~ 281 (297)
-.++-..-. .+.+|-.+-....-.+-=|..|-.+.+.|-....
T Consensus 81 ~~~ay~~F~~~~~~pl~~l~~~~~~kee~~~PTgSFKDRga~~~ 124 (468)
T 4f4f_A 81 VREAYGTFRHDAVCPLVQTDANEFVLELFHGPTLAFKDVAMQLL 124 (468)
T ss_dssp HHHHHHTSSSTTSSCEEEEETTEEEEECCCSTTSBTHHHHHHHH
T ss_pred HHHHHhcCCCCCCCceEEecCCeehHHhccCCcccHHHHHHHHH
Confidence 999987432 1122222211111112236668888888876554
No 23
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=39.91 E-value=38 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.4
Q ss_pred hHHHH-HHcCCCcchHHHHHHHHHHHHhcCCC
Q 022424 221 HFCEY-IKRGIEADNLEELYKKVHAAIRADPN 251 (297)
Q Consensus 221 qFS~y-ik~gi~~~~ie~~y~~~~~~I~~~p~ 251 (297)
+||+. |+.+|.||+|-++.++|...+ +|+
T Consensus 32 ~fsr~liek~I~PEeiV~iHk~~i~~l--~~~ 61 (111)
T 2j6y_A 32 KFSRKTIEHQIPPEEIISIHRKVLKEL--YPS 61 (111)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh--CCC
Confidence 78885 778999999999999999999 554
No 24
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=39.54 E-value=40 Score=26.86 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=50.3
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|.-..-||.+|... =|++ .|..++++. |..++..|. |.+.+-.+.+.--. .||+|++++.+-+--...|.+
T Consensus 37 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2r80_A 37 PQTKTYFPHFDLSH--GSAQIKGHGKKVAEA-LVEAANHID--DIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAV 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhcCCCC--CCHHHHHHHHHHHHH-HHHHHHhhh--hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 66667888875543 3344 666666654 777888874 46666667776555 499999999988888888865
No 25
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=32.95 E-value=11 Score=34.63 Aligned_cols=68 Identities=25% Similarity=0.332 Sum_probs=39.5
Q ss_pred eecccccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcch
Q 022424 161 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEADN 234 (297)
Q Consensus 161 a~KGA~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~---qFS~yik~gi~~~~ 234 (297)
+++|.+|. =++|-|-+|=-=. +++- -.++++. .+.-|.++.+.|.++|+|.|.+ +|+..||.|+-.|.
T Consensus 96 FvkGVVDS-~DLpLNvSRE~LQ--~~~~--l~~Irk~-l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~G~~eD~ 166 (263)
T 1y6z_A 96 FLRGIVDS-ENLPLNVGREILQ--KSKM--LSIINKR-IVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVEDK 166 (263)
T ss_dssp TCEEEEEE-CC--------------CTT--HHHHHHH-HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHeecccc-ccCCCccchhhhc--ccHH--HHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHccccccCH
Confidence 46777774 2444444332111 1111 2244444 5678889999999999999986 89999999976543
No 26
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=32.05 E-value=17 Score=34.22 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.8
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcc
Q 022424 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEAD 233 (297)
Q Consensus 199 ~G~hVa~Ym~~L~eed~e~yk~---qFS~yik~gi~~~ 233 (297)
.++-|.++.+.|.++|+|.|++ +|+..||.|+-.|
T Consensus 124 l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~eD 161 (303)
T 2gq0_A 124 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAED 161 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhhcC
Confidence 5778889999999999998876 8999999997544
No 27
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1
Probab=30.97 E-value=28 Score=33.17 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=50.3
Q ss_pred eeecc-cccCCccccCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHHcCCCcchHHHH
Q 022424 160 GALKG-ALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEEL 238 (297)
Q Consensus 160 aa~KG-A~DgGL~IPh~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik~gi~~~~ie~~ 238 (297)
|+++| |.||||.||.. +|-. +++.+++ +.+..-.+ .=..-++.|+...|++++|..+
T Consensus 18 a~~~gl~~~GGl~vp~~---~p~~-------~~~~~~~-~~~~~y~~-----------~a~~i~~~f~~~~~~~~~l~~~ 75 (428)
T 1vb3_A 18 AVTQGLGKNQGLFFPHD---LPEF-------SLTEIDE-MLKLDFVT-----------RSAKILSAFIGDEIPQEILEER 75 (428)
T ss_dssp HHHHCSBGGGBCEEESS---CCCC-------CHHHHHH-HTTSCHHH-----------HHHHHHHHHHGGGSCHHHHHHH
T ss_pred HHHccCCCCCcEEeccc---cCCC-------CHHHHHH-HhCCCHHH-----------HHHHHHHHHhcCCCCHHHHHHH
Confidence 47789 79999999975 5764 3332222 11211111 1122346777777899999888
Q ss_pred HHHHHHHHhcCCCCCcCCCCCCcccccCCCCCCCHHHHHHHH
Q 022424 239 YKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARL 280 (297)
Q Consensus 239 y~~~~~~I~~~p~~~~~~k~~~~~~k~~~~~Klt~~qrk~rv 280 (297)
..++-. -|+|--+-....--.=-++.+-.+.+-|....
T Consensus 76 ~~~~~~----~~TPL~~l~~~i~~~E~~~~pTgSfKdr~a~~ 113 (428)
T 1vb3_A 76 VRAAFA----FPAPVANVESDVGCLELFHGPTLAFKDFGGRF 113 (428)
T ss_dssp HHHHCC----SCCCEEEEETTEEEEECCCSTTSBTHHHHHHH
T ss_pred HHHHhC----CCCCeEEecCCeEEeeccCCCcccHHHHHHHH
Confidence 876642 23332111001001112333567777777654
No 28
>2zs0_A Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_A* 2d2m_A* 2zfo_A* 2zs1_A*
Probab=29.28 E-value=78 Score=24.96 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=46.4
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHH----HHcCCCcchHHHHHHHHHHHH
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEY----IKRGIEADNLEELYKKVHAAI 246 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~y----ik~gi~~~~ie~~y~~~~~~I 246 (297)
|.-..-||.++..+.. |++ .|-.++++ -|..++..| +|++.....+++. ...||+|++++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~~~-~~~~~~h~~~v~~-al~~~v~~l--d~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 2zs0_A 40 GSSRALFSGVGVDDMN-SAAFTAHCLRVTG-ALNRLISQL--DQQATINADLAHLAGQHASRNLDASNFAAMGQAVMSVV 115 (140)
T ss_dssp GGGGGGGGGGTTTSTT-SHHHHHHHHHHHH-HHHHHHHTT--TCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHhhhhcCCCCCC-CHHHHHHHHHHHH-HHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6666677776432221 554 45566665 577788887 4666555544443 224999999998888888887
Q ss_pred hc
Q 022424 247 RA 248 (297)
Q Consensus 247 ~~ 248 (297)
.+
T Consensus 116 ~~ 117 (140)
T 2zs0_A 116 PT 117 (140)
T ss_dssp GG
T ss_pred HH
Confidence 65
No 29
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.87 E-value=46 Score=20.61 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 022424 273 YEERKARLVERLKALN 288 (297)
Q Consensus 273 ~~qrk~rv~~k~~~~~ 288 (297)
++|+-+.++||++++.
T Consensus 12 leqkiaalkqkiaslk 27 (28)
T 3ra3_A 12 LEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5788888888888875
No 30
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=28.83 E-value=84 Score=24.67 Aligned_cols=72 Identities=14% Similarity=0.313 Sum_probs=46.2
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHH---H-HcCCCcchHHHHHHHHHHHH
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEY---I-KRGIEADNLEELYKKVHAAI 246 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~y---i-k~gi~~~~ie~~y~~~~~~I 246 (297)
|.-...||.++..+ .-|++ .|..++++. |..++..|. |++.....+++. - ..||+|+.++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~-~~s~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (140)
T 1x9f_D 40 PEIKAPFSRVRGDN-IYSPEFGAHSQRVLSG-LDITISMLD--TPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVL 115 (140)
T ss_dssp GGGGGGGGGGTTTC-TTSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCC-CCCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66666777654322 22443 455666554 777888774 666555554443 2 24999999998888888887
Q ss_pred hc
Q 022424 247 RA 248 (297)
Q Consensus 247 ~~ 248 (297)
++
T Consensus 116 ~~ 117 (140)
T 1x9f_D 116 GD 117 (140)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 31
>2zs0_C Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_C* 2d2m_C* 2zfo_C* 2zs1_C*
Probab=28.70 E-value=75 Score=25.28 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=44.9
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhh---HHHHHH-c-CCCcchHHHHHHHHHHH
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSH---FCEYIK-R-GIEADNLEELYKKVHAA 245 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~q---FS~yik-~-gi~~~~ie~~y~~~~~~ 245 (297)
|.-..-||.++.++. -|++ .|..++++. |..++..|. |++..... .+.--. . ||+|+.++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--d~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (147)
T 2zs0_C 44 AAAQGLFSGVSADNP-DSADFRAHCVRVVNG-LDVAINMLN--DPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEV 119 (147)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCccCC-CCHHHHHHHHHHHHH-HHHHHHHcC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 556667776543222 2444 455666654 667777774 66554444 444333 4 99999999888888888
Q ss_pred Hhc
Q 022424 246 IRA 248 (297)
Q Consensus 246 I~~ 248 (297)
|.+
T Consensus 120 l~~ 122 (147)
T 2zs0_C 120 MPQ 122 (147)
T ss_dssp GGG
T ss_pred HHH
Confidence 765
No 32
>1yhu_D Hemoglobin B2 chain; globin fold, oxygen storage-transport complex; HET: HEM; 3.15A {Riftia pachyptila}
Probab=27.50 E-value=1e+02 Score=24.54 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=46.1
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHH---HHH-c-CCCcchHHHHHHHHHHH
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCE---YIK-R-GIEADNLEELYKKVHAA 245 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~---yik-~-gi~~~~ie~~y~~~~~~ 245 (297)
|.-...||.++..+. -|++ .|..++++. |..++..|. |++.....+++ --. . ||+|+.++.+-+-....
T Consensus 44 P~~k~~F~~~~~~~~-~~~~~~~h~~~v~~~-l~~~v~~ld--~~~~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~ 119 (149)
T 1yhu_D 44 PDAVGLFGAVKGDEV-NSNEFKAHCIRVVNG-LDSSIGLLS--DPATLNEQLSHLATQHKARSGVTKGGFSAIAQSFLRV 119 (149)
T ss_dssp GGGGGGGGGGTSSST-TSHHHHHHHHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCC-CCHHHHHHHHHHHHH-HHHHHHHCC--CHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 666667777643322 2443 566666654 677777774 66655544444 333 3 99999999888888888
Q ss_pred Hhc
Q 022424 246 IRA 248 (297)
Q Consensus 246 I~~ 248 (297)
|++
T Consensus 120 l~~ 122 (149)
T 1yhu_D 120 MPQ 122 (149)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 33
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=27.07 E-value=39 Score=34.06 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcch
Q 022424 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEADN 234 (297)
Q Consensus 199 ~G~hVa~Ym~~L~eed~e~yk~---qFS~yik~gi~~~~ 234 (297)
.++-|.++.+.|.++|+|.|++ +|+..||.|+-.|.
T Consensus 352 l~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~ 390 (559)
T 1y4s_A 352 LTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDF 390 (559)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSTTTCG
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCH
Confidence 4677889999999999998876 89999999987664
No 34
>3d1k_A Hemoglobin subunit alpha-1; antarctic FISH hemoglobin, intermediate R/T quaternary structure, oxidation pathway, heme, iron, metal-binding; HET: HEM; 1.25A {Dusky notothen} SCOP: a.1.1.2 PDB: 2aa1_A* 1t1n_A* 1la6_A* 3nfe_A* 3ng6_A* 2h8f_A* 1pbx_A* 1s5x_A* 1s5y_A* 1hbh_A* 2h8d_A* 2peg_A* 3gkv_A* 3gqg_A* 1v4x_A* 1v4u_A* 1v4w_A*
Probab=25.76 E-value=98 Score=24.44 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=47.7
Q ss_pred cCCCcccCCC-CCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 022424 173 PHSEKRFAGF-SKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIR 247 (297)
Q Consensus 173 Ph~~~~fpgy-~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~ 247 (297)
|.-..-||.+ |... =|++ .|..++++. |..++..|. |-+.+-.+.+.--. .||+|++++.+-+--...|.
T Consensus 37 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~ 111 (142)
T 3d1k_A 37 PQTKIYFSHWPDVTP--GSPNIKAHGKKVMGG-IALAVSKID--DLKTGLMELSEQHAYKLRVDPSNFKILNHCILVVIS 111 (142)
T ss_dssp GGGGGGGTTSSCCST--TCHHHHHHHHHHHHH-HHHHHHTTT--CHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCC--CCHHHHHHHHHHHHH-HHHHHHhHH--HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 6666778876 3322 2333 556666553 777788774 35566666666444 59999999998888888886
Q ss_pred c
Q 022424 248 A 248 (297)
Q Consensus 248 ~ 248 (297)
+
T Consensus 112 ~ 112 (142)
T 3d1k_A 112 T 112 (142)
T ss_dssp H
T ss_pred H
Confidence 5
No 35
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=25.19 E-value=95 Score=24.38 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=49.2
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|.-..-||.+|.++ =|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|++++.+-+-....|++
T Consensus 37 P~~~~~F~~~d~~~--~~~~~~~h~~~v~~-al~~~v~~ld--~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (141)
T 2w72_C 37 PTTKTYFPHFDLSH--GSAQVKGQGKKVAD-ALTNAVAHVD--DMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (141)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--SHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66667888876544 3444 55555544 4666777664 46666666666553 699999999988888888865
Q ss_pred C
Q 022424 249 D 249 (297)
Q Consensus 249 ~ 249 (297)
-
T Consensus 112 ~ 112 (141)
T 2w72_C 112 H 112 (141)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=23.86 E-value=31 Score=31.80 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=27.8
Q ss_pred ccccHHHHHHHhcccChHHHHh---hHHHHHHcCCCcc
Q 022424 199 YCGHVAAYMRTLMEDEPEKYQS---HFCEYIKRGIEAD 233 (297)
Q Consensus 199 ~G~hVa~Ym~~L~eed~e~yk~---qFS~yik~gi~~~ 233 (297)
.+.-|.+..+.|. +|+|.|++ +|+..||.|+--|
T Consensus 126 i~kkvl~~l~~la-~d~e~Y~~f~~~fg~~lK~G~~eD 162 (268)
T 3pry_A 126 IVKKCLELFSELA-EDKENYKKFYEAFSKNLKLGIHED 162 (268)
T ss_dssp HHHHHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHhHhhCC
Confidence 5677888999999 89998875 8899999998433
No 37
>1gcv_B Hemoglobin; oxygen storage/transport complex; HET: HEM; 2.00A {Mustelus griseus} SCOP: a.1.1.2 PDB: 1gcw_B*
Probab=23.70 E-value=98 Score=24.65 Aligned_cols=68 Identities=6% Similarity=0.117 Sum_probs=47.7
Q ss_pred cCCCcccCCC-CCCcccCCHHhhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGF-SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy-~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|-.-.-||.+ |. ++..|..++++. |.+++..|.+ -+.+-.+.|.--. .||+|++++-+-+--...|.+
T Consensus 36 P~~k~~F~~f~d~-----~~~~h~~~v~~a-l~~~v~~ld~--l~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~ 106 (136)
T 1gcv_B 36 PWTNRYFQKRTDF-----RSSIHAGIVVGA-LQDAVKHMDD--VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAY 106 (136)
T ss_dssp GGGGGGTTTCTTC-----CHHHHHHHHHHH-HHHHHHTTTC--HHHHTHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhhcccCC-----CccHHHHHHHHH-HHHHHHhHhh--HHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 6666778865 33 233788887765 7788888863 5556666666544 599999999887777777754
No 38
>3bom_A Hemoglobin subunit alpha-4; FISH hemoglobin, structural genomics community request, protein structure initiative, PSI-2; HET: HEM; 1.35A {Oncorhynchus mykiss} PDB: 2r1h_A*
Probab=22.19 E-value=1.1e+02 Score=24.31 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=47.6
Q ss_pred cCCCcccCCC-CCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHh
Q 022424 173 PHSEKRFAGF-SKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIR 247 (297)
Q Consensus 173 Ph~~~~fpgy-~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~ 247 (297)
|.-..-||.+ |... =|++ .|..++++. |.+++..|. |-+.+-.+.+.--. .||+|++++.+-+--...|.
T Consensus 38 P~~~~~F~~~~~~~~--~s~~~~~h~~~v~~a-l~~~v~~ld--~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~ 112 (143)
T 3bom_A 38 PQTKAYFSHWASVAP--GSAPVKKHGITIMNQ-IDDCVGHMD--DLFGFLTKLSELHATKLRVDPTNFKILAHNLIVVIA 112 (143)
T ss_dssp GGGGGGCTTSSCCST--TCHHHHHHHHHHHHH-HHHHHTTTT--CHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCC--CCHHHHHHHHHHHHH-HHHHHHhHH--hHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHH
Confidence 6666778876 3322 2333 556666553 677787774 35566666666544 59999999998888888886
Q ss_pred c
Q 022424 248 A 248 (297)
Q Consensus 248 ~ 248 (297)
+
T Consensus 113 ~ 113 (143)
T 3bom_A 113 A 113 (143)
T ss_dssp H
T ss_pred H
Confidence 5
No 39
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.81 E-value=36 Score=26.82 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcc
Q 022424 270 KLTYEERKARLVERLKALNAAE 291 (297)
Q Consensus 270 Klt~~qrk~rv~~k~~~~~~~~ 291 (297)
-|+.+||+.++++|+..+...-
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei 31 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSREL 31 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998887653
No 40
>1jeb_A Hemoglobin zeta chain; oxygen transport, oxygen storage/transport complex; HET: HEM; 2.10A {Homo sapiens} SCOP: a.1.1.2
Probab=21.03 E-value=1.2e+02 Score=23.73 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=49.1
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|.-..-||.+|.+. =|++ .|..++++ -|..++..|. |.+.+-.+.+.--. .||+|+.++.+-+-....|++
T Consensus 38 P~~k~~F~~~~~~~--~s~~~~~h~~~v~~-~l~~~v~~ld--~l~~~l~~L~~~H~~k~~V~p~~f~~~~~~ll~~l~~ 112 (142)
T 1jeb_A 38 PQTKTYFPHFDLHP--GSAQLRAHGSKVVA-AVGDAVKSID--DIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAA 112 (142)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHH-HHHHHHHTTT--CHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHCCCCC--CCHHHHHHHHHHHH-HHHHHHHhHh--hHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 66667888876543 2343 44555443 5677777774 46677777777653 699999999988888888865
No 41
>3ubc_A Hemoglobin-like flavoprotein; oxygen-bound, autoxidation, nanotemplate, langmuir-blodgett, films, oxygen transport; HET: HEM; 1.65A {Methylacidiphilum infernorum V4} PDB: 3ubv_A* 3s1i_A* 3s1j_A*
Probab=21.02 E-value=1.6e+02 Score=22.59 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=42.1
Q ss_pred cCCCcccCCCCCCcccCCHHhhhcccccccHHHHHHHhcccChHHHH---hhHHHH-HHcCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQ---SHFCEY-IKRGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae~~~~ri~G~hVa~Ym~~L~eed~e~yk---~qFS~y-ik~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|.-..-||. |-..|..++++ -|..++..|. |++... .+.+.- .+.||+|++++.+-+--...|++
T Consensus 36 P~~k~~F~~--------d~~~h~~~l~~-al~~~v~~ld--~~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l~~ 104 (131)
T 3ubc_A 36 PTVSVLFQN--------PISSQSRKLMQ-VLGILVQGID--NLEGLIPTLQDLGRRHKQYGVVDSHYPLVGDCLLKSIQE 104 (131)
T ss_dssp GGGGGGCCS--------CHHHHHHHHHH-HHHHHHHTGG--GGGGGHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHccc--------cHHHHHHHHHH-HHHHHHHhCC--ChHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 555566765 34556666554 6777888774 455443 333332 35799999999888877777765
No 42
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=20.91 E-value=1.1e+02 Score=27.13 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=51.0
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHHHH--cCCCcchHHHHHHHHHHHHhc
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIK--RGIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~yik--~gi~~~~ie~~y~~~~~~I~~ 248 (297)
|.-...||.+|.++ -|++ .|..++++. |.+++..|.+ .+.+-.+.+.--. .||+|+.++.+-+--...|++
T Consensus 37 P~~~~~F~~~~~~~--~n~~~~~h~~~v~~~-l~~~v~~ld~--l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~ 111 (283)
T 1c7c_A 37 PTTKTYFPHFDLSH--GSAQVKGHGKKVADA-LTNAVAHVDD--MPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAA 111 (283)
T ss_dssp GGGGGGCTTSCCST--TCHHHHHHHHHHHHH-HHHHHHTGGG--HHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCC--CChHHHHHHHHHHHH-HHHHHHcccC--chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77777888876543 3454 677777765 7788888853 5555556665444 599999999888888888876
Q ss_pred C
Q 022424 249 D 249 (297)
Q Consensus 249 ~ 249 (297)
-
T Consensus 112 ~ 112 (283)
T 1c7c_A 112 H 112 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>2zs0_B Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2d2n_B* 2d2m_B* 2zfo_B* 2zs1_B*
Probab=20.83 E-value=1.8e+02 Score=22.75 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=44.9
Q ss_pred cCCCcccCCCCCCcccCCHH--hhhcccccccHHHHHHHhcccChHHHHhhHHHH---HH-cCCCcchHHHHHHHHHHHH
Q 022424 173 PHSEKRFAGFSKDSKQLDAE--VHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEY---IK-RGIEADNLEELYKKVHAAI 246 (297)
Q Consensus 173 Ph~~~~fpgy~~e~k~~~ae--~~~~ri~G~hVa~Ym~~L~eed~e~yk~qFS~y---ik-~gi~~~~ie~~y~~~~~~I 246 (297)
|.-...||.++..+. -|++ .|-.++++ -|..++..|. |++.....+++. -. .||+|+.++.+-+-....|
T Consensus 40 P~~k~~F~~~~~~~~-~s~~~~~h~~~v~~-~l~~~v~~ld--d~~~l~~~l~~L~~~H~~~gV~p~~f~~~~~~Ll~~l 115 (142)
T 2zs0_B 40 PDARGLFSRVNGNDI-DSSEFQAHSLRVLG-GLDMCVASLD--DVPVLNALLARLNSQHDSRGIPAAGYPAFVASAISAV 115 (142)
T ss_dssp GGGGGGGGGGTTTST-TSHHHHHHHHHHHH-HHHHHHHTTT--CHHHHHHHHHHHHHHHTTSCCCTTHHHHHHHHHHHHH
T ss_pred hHHHHhhhhccCCCC-CCHHHHHHHHHHHH-HHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 666667776643222 3444 56666554 3566676663 666555544443 22 4999999998888888887
Q ss_pred hc
Q 022424 247 RA 248 (297)
Q Consensus 247 ~~ 248 (297)
++
T Consensus 116 ~~ 117 (142)
T 2zs0_B 116 RA 117 (142)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 44
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=20.57 E-value=1.1e+02 Score=24.50 Aligned_cols=42 Identities=21% Similarity=0.442 Sum_probs=35.8
Q ss_pred HHHhcccChHHHHhhHHHHHHc---CCCcchHHHHHHHHHHHHhc
Q 022424 207 MRTLMEDEPEKYQSHFCEYIKR---GIEADNLEELYKKVHAAIRA 248 (297)
Q Consensus 207 m~~L~eed~e~yk~qFS~yik~---gi~~~~ie~~y~~~~~~I~~ 248 (297)
|..|.+++...|..||.++... .+++++..++=+++++++.+
T Consensus 42 ~~~M~~k~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~k 86 (100)
T 2xrh_A 42 MEKMPEDKRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALKK 86 (100)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 6778889999999999998775 57899998888888888854
Done!