Your job contains 1 sequence.
>022425
MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED
AIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS
ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY
VRVREYDSRRSYSRSPSRSPYYSRSRSRSPYYSRSRSPSRSWSYSPRSRSYSPRGKYSRR
SPSLSPARSASQRSPSGSPPRSFSRSRSRSSSPLSSPRSPRGRSRSRTRSISRSLSP
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022425
(297 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 643 5.4e-63 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 623 7.1e-61 1
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 592 1.4e-57 1
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 560 3.4e-54 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 254 3.6e-42 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 254 3.6e-42 2
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 431 1.6e-40 1
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 431 1.6e-40 1
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 427 4.2e-40 1
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 427 4.2e-40 1
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 427 4.2e-40 1
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 427 4.2e-40 1
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 427 4.2e-40 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 427 4.2e-40 1
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 427 4.2e-40 1
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 427 4.2e-40 1
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 423 1.1e-39 1
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 409 3.4e-38 1
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 207 1.7e-36 2
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 208 2.2e-36 2
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 206 3.5e-36 2
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 204 5.7e-36 2
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 203 9.2e-36 2
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 201 1.2e-35 2
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 204 1.5e-35 2
GENEDB_PFALCIPARUM|PF10_0217 - symbol:PF10_0217 "pre-mRNA... 203 1.4e-29 2
UNIPROTKB|Q8IJI0 - symbol:PF10_0217 "Pre-mRNA splicing fa... 203 1.4e-29 2
UNIPROTKB|H0YIB4 - symbol:SRSF9 "Serine/arginine-rich-spl... 172 5.9e-29 2
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 297 2.5e-26 1
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 297 2.5e-26 1
UNIPROTKB|F1NQW8 - symbol:SRSF1 "Serine/arginine-rich-spl... 286 3.6e-25 1
UNIPROTKB|F1NRH9 - symbol:SRSF1 "Serine/arginine-rich-spl... 286 3.6e-25 1
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 141 1.6e-21 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 254 3.8e-21 1
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 254 3.9e-21 1
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 254 3.9e-21 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 254 4.0e-21 1
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 254 4.0e-21 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 138 2.6e-20 2
ASPGD|ASPL0000075947 - symbol:AN4978 species:162425 "Emer... 134 4.6e-20 2
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 133 1.2e-19 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 233 1.5e-19 1
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 233 1.5e-19 1
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 233 1.5e-19 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 232 1.9e-19 1
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 232 1.9e-19 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 230 3.1e-19 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 227 6.5e-19 1
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 227 6.5e-19 1
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 220 3.6e-18 1
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 220 3.6e-18 1
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 220 3.6e-18 1
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 220 3.6e-18 1
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 220 3.6e-18 1
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 220 3.6e-18 1
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 220 3.6e-18 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 222 5.2e-18 1
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 210 4.1e-17 1
UNIPROTKB|J3KSR8 - symbol:SRSF1 "Serine/arginine-rich-spl... 206 1.1e-16 1
POMBASE|SPAC16.02c - symbol:srp2 "mRNA export factor Srp2... 117 1.2e-16 2
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 200 4.7e-16 1
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 203 5.4e-16 1
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 118 1.6e-15 2
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 118 1.6e-15 2
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 195 1.6e-15 1
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli... 170 3.2e-15 2
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 168 4.5e-15 2
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 168 4.5e-15 2
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 168 4.5e-15 2
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 168 4.5e-15 2
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1... 168 4.5e-15 2
UNIPROTKB|F1NJ04 - symbol:SRSF4 "Uncharacterized protein"... 188 8.8e-15 1
UNIPROTKB|F1PEZ0 - symbol:SRSF4 "Uncharacterized protein"... 194 1.3e-14 1
UNIPROTKB|F1LSN0 - symbol:Srsf4 "Protein Sfrs4" species:1... 194 1.4e-14 1
FB|FBgn0030479 - symbol:Rbp1-like "Rbp1-like" species:722... 183 3.0e-14 1
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 159 3.9e-14 2
UNIPROTKB|F1NJ03 - symbol:SRSF4 "Uncharacterized protein"... 188 4.9e-14 1
ZFIN|ZDB-GENE-050913-95 - symbol:srsf7 "serine/arginine-r... 157 7.9e-14 2
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 179 7.9e-14 1
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 179 7.9e-14 1
UNIPROTKB|E1C270 - symbol:E1C270 "Uncharacterized protein... 142 9.1e-14 2
UNIPROTKB|J3KSW7 - symbol:SRSF1 "Serine/arginine-rich-spl... 178 1.0e-13 1
FB|FBgn0260944 - symbol:Rbp1 "RNA-binding protein 1" spec... 177 1.3e-13 1
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ... 172 4.4e-13 1
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"... 170 7.9e-13 1
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing... 168 1.2e-12 1
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 115 1.6e-12 2
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 115 1.6e-12 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 164 3.1e-12 1
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 164 3.1e-12 1
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 164 3.1e-12 1
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 164 3.1e-12 1
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 164 3.1e-12 1
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 164 3.1e-12 1
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 164 3.1e-12 1
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 164 3.1e-12 1
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 164 3.1e-12 1
FB|FBgn0028554 - symbol:x16 species:7227 "Drosophila mela... 164 3.2e-12 1
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 163 3.9e-12 1
CGD|CAL0003843 - symbol:NPL3 species:5476 "Candida albica... 105 6.0e-12 2
WARNING: Descriptions of 394 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 124/176 (70%), Positives = 137/176 (77%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MSSR +RT+YVGNLPGD R EVEDLFYKYGPIVDIDLKIPPRPPGYAF+EFED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSS 120
AI GRDGY+FDG RLRVE+AHGG VLVTGLP S
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASRAPSRRSDYR-VLVTGLPPS 119
Query: 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176
ASWQDLKDHMR+AGDVCFS+VF DR GM+G+VDY++YDDMKYAIRKLD +EFRNAF
Sbjct: 120 ASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAF 175
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 122/185 (65%), Positives = 136/185 (73%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MSSRSSRT+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAF+EF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX---------XXXXXXX 111
AI GRDGY+FDG+RLRVELAHGG
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 172 FRNAF 176
FRNAF
Sbjct: 181 FRNAF 185
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 121/186 (65%), Positives = 133/186 (71%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MSSRSSRT+YVGNLPGD R REVEDLF KYGP+V IDLKIPPRPPGYAF+EFED RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX----------XXXXXX 110
AI GRDGY+FDG+ LRVELAHGG
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120
Query: 111 XVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170
V+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRD G TGIVDYTSY+DMKYA LD +
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 177
Query: 171 EFRNAF 176
EFRNAF
Sbjct: 178 EFRNAF 183
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 112/186 (60%), Positives = 127/186 (68%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MS R SR++YVGNLPGD R E+ED+FYKYG IVDI+LK+PPRPP Y F+EFE RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXX------------XXXXXXXXXX 108
AI+GRDGYN DG RLRVELAHGG
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 109 XXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
V+V GLPSSASWQDLKDHMR+AGDVCF++V RD G G+VDYT+YDDMKYAIRKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 169 RSEFRN 174
+EFRN
Sbjct: 181 DTEFRN 186
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 254 (94.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLPGD R +EVED+F+KYG I +D+K R P +AF+EFED+RDAEDA+R RDGY
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 69 NFDGYRLRVELAHG 82
FDG R+RVE G
Sbjct: 70 EFDGRRIRVEFTRG 83
Score = 209 (78.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+V GLP + SWQDLKDHMR AGDVC++ V RD G TG+V++T Y+D+KYA+RKLD ++
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD-G--TGVVEFTRYEDVKYAVRKLDDTK 181
Query: 172 FRN 174
FR+
Sbjct: 182 FRS 184
Score = 34 (17.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 54 DYRDAEDAIRGRDGYNFDGYRLRVE 78
D+R RG GYR+ VE
Sbjct: 104 DFRGGRGGGRGGGPQRRTGYRVIVE 128
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 254 (94.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLPGD R +EVED+F+KYG I +D+K R P +AF+EFED+RDAEDA+R RDGY
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 69 NFDGYRLRVELAHG 82
FDG R+RVE G
Sbjct: 70 EFDGRRIRVEFTRG 83
Score = 209 (78.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+V GLP + SWQDLKDHMR AGDVC++ V RD G TG+V++T Y+D+KYA+RKLD ++
Sbjct: 125 VIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD-G--TGVVEFTRYEDVKYAVRKLDDTK 181
Query: 172 FRN 174
FR+
Sbjct: 182 FRS 184
Score = 34 (17.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 54 DYRDAEDAIRGRDGYNFDGYRLRVE 78
D+R RG GYR+ VE
Sbjct: 104 DFRGGRGGGRGGGPQRRTGYRVIVE 128
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 87/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 88/168 (52%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 137 KDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 86/168 (51%), Positives = 109/168 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVLVTGLPSSASWQDL 126
++DGYRLRVE G V+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
KDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 138 KDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 182
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
Identities = 85/180 (47%), Positives = 115/180 (63%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
M SR+ +YVGNLP D R ++++DLF+K+G + +DLK PP +AF+EFED RDA+D
Sbjct: 1 MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-FAFVEFEDARDADD 59
Query: 61 AIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX------XXXXXXXVLV 114
A++ RDGY++DGYRLRVE GG V+V
Sbjct: 60 AVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMV 119
Query: 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
TGLP+S SWQDLKDHMR AGDVCF+ ++D G +G+V++ ++DMKYAI+KLD S FR+
Sbjct: 120 TGLPASGSWQDLKDHMREAGDVCFADTYKD-G--SGVVEFLRHEDMKYAIKKLDDSRFRS 176
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 88/178 (49%), Positives = 109/178 (61%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGYRLRVELAH------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTG 116
++DGYRLRVE GG V+V+G
Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136
Query: 117 LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
LP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++FR+
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKFRS 191
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 207 (77.9 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGG 83
++ RLRVE +GG
Sbjct: 76 DYGQCRLRVEFPRTYGG 92
Score = 202 (76.2 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDETK 169
Query: 172 FRN 174
FR+
Sbjct: 170 FRS 172
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 208 (78.3 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGG 83
++ RLRVE A+GG
Sbjct: 76 DYGQCRLRVEFPRAYGG 92
Score = 200 (75.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTK 169
Query: 172 FRN 174
FR+
Sbjct: 170 FRS 172
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 206 (77.6 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGYRLRVEL--AHGG 83
++ RLRVE +GG
Sbjct: 77 DYGQCRLRVEFPRTYGG 93
Score = 200 (75.5 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++
Sbjct: 114 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTK 170
Query: 172 FRN 174
FR+
Sbjct: 171 FRS 173
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 204 (76.9 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGG 83
++ RLRVE +GG
Sbjct: 76 DYGQCRLRVEFPRTYGG 92
Score = 200 (75.5 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTK 169
Query: 172 FRN 174
FR+
Sbjct: 170 FRS 172
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 203 (76.5 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S +YVGNLP D + R++EDLF+KYG I DI+LK +AF+ FED RDAEDA+ G
Sbjct: 2 SDGRIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFG 61
Query: 65 RDGYNFDGYRLRVE 78
R+GY F +LRVE
Sbjct: 62 RNGYGFGDCKLRVE 75
Score = 199 (75.1 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+VTGLP + SWQDLKDHMR AGDVCF+ V RD G G+V++ +DM+YA+R+LD +E
Sbjct: 112 VIVTGLPPTGSWQDLKDHMREAGDVCFADVQRD-G--EGVVEFLRREDMEYALRRLDSTE 168
Query: 172 FRN 174
FR+
Sbjct: 169 FRS 171
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 201 (75.8 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVE 78
++ RLRVE
Sbjct: 76 DYGQCRLRVE 85
Score = 200 (75.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTK 169
Query: 172 FRN 174
FR+
Sbjct: 170 FRS 172
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 204 (76.9 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGG 83
++ RLRVE +GG
Sbjct: 76 DYGQCRLRVEFPRTYGG 92
Score = 196 (74.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 38/63 (60%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLV+GLP S SWQDLKDHMR AGDVC++ V +D G+ G+V+Y +DM+YA+RKLD ++
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GV-GMVEYLRKEDMEYALRKLDDTK 169
Query: 172 FRN 174
FR+
Sbjct: 170 FRS 172
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 203 (76.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 46/83 (55%), Positives = 55/83 (66%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPG--YAFLEFEDYRDAED 60
S+SS +YVGNLPG+ EV DLF KYG I ID+K P R YAF+ + D +DA+
Sbjct: 8 SKSSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIK-PSRSSSSSYAFVHYYDLKDADY 66
Query: 61 AIRGRDGYNFDGYRLRVELAHGG 83
AI RDGY FDG+RLRVE H G
Sbjct: 67 AIERRDGYKFDGFRLRVE--HSG 87
Score = 157 (60.3 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+VT LP + WQ LKD MR+ GDV ++ + +RG GIV++ SYDDM YAI K D +E
Sbjct: 112 VIVTNLPDNCRWQHLKDIMRQCGDVGYANI--ERG--KGIVEFVSYDDMLYAIEKFDGAE 167
Query: 172 FR 173
F+
Sbjct: 168 FK 169
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 203 (76.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 46/83 (55%), Positives = 55/83 (66%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPG--YAFLEFEDYRDAED 60
S+SS +YVGNLPG+ EV DLF KYG I ID+K P R YAF+ + D +DA+
Sbjct: 8 SKSSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIK-PSRSSSSSYAFVHYYDLKDADY 66
Query: 61 AIRGRDGYNFDGYRLRVELAHGG 83
AI RDGY FDG+RLRVE H G
Sbjct: 67 AIERRDGYKFDGFRLRVE--HSG 87
Score = 157 (60.3 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+VT LP + WQ LKD MR+ GDV ++ + +RG GIV++ SYDDM YAI K D +E
Sbjct: 112 VIVTNLPDNCRWQHLKDIMRQCGDVGYANI--ERG--KGIVEFVSYDDMLYAIEKFDGAE 167
Query: 172 FR 173
F+
Sbjct: 168 FK 169
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 172 (65.6 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+G
Sbjct: 4 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 62
Score = 165 (63.1 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 116 GLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167
GLP S SWQDLKDHMR AGDVC++ V +D G+ G+V+Y +DM+YA+RKL
Sbjct: 62 GLPPSGSWQDLKDHMREAGDVCYADVQKD--GV-GMVEYLRKEDMEYALRKL 110
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 70/166 (42%), Positives = 91/166 (54%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP R+VE+ F KYG I+ D+K +AF+EFED RDA DAI+ +DG
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKD 128
+F+G +LRVE+ V VTGLP S SWQDLKD
Sbjct: 70 DFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQDLKD 129
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
H+R AG+ + VF+D G TG V + + DDM AI K + S FR+
Sbjct: 130 HLREAGECGHADVFKD-G--TGEVSFFNKDDMLEAIDKFNGSIFRS 172
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 70/166 (42%), Positives = 91/166 (54%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP R+VE+ F KYG I+ D+K +AF+EFED RDA DAI+ +DG
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 69 NFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDLKD 128
+F+G +LRVE+ V VTGLP S SWQDLKD
Sbjct: 70 DFEGNKLRVEVPFNARENGRYNARGGGRGMMHRGPKSRRGRYVVEVTGLPISGSWQDLKD 129
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
H+R AG+ + VF+D G TG V + + DDM AI K + S FR+
Sbjct: 130 HLREAGECGHADVFKD-G--TGEVSFFNKDDMLEAIDKFNGSIFRS 172
>UNIPROTKB|F1NQW8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 IPI:IPI00573494 EMBL:AADN02025726
Ensembl:ENSGALT00000039052 Uniprot:F1NQW8
Length = 184
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/121 (48%), Positives = 74/121 (61%)
Query: 56 RDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVL 113
RDAEDA+ GRDGY++DGYRLRVE G V+
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVI 60
Query: 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++FR
Sbjct: 61 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKFR 117
Query: 174 N 174
+
Sbjct: 118 S 118
>UNIPROTKB|F1NRH9 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0060048 "cardiac muscle contraction"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0000395
GeneTree:ENSGT00700000104103 EMBL:AADN02025726 IPI:IPI00819428
Ensembl:ENSGALT00000008863 OMA:EVRQEDI Uniprot:F1NRH9
Length = 192
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 59/121 (48%), Positives = 74/121 (61%)
Query: 56 RDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXX--XXXXXXXVL 113
RDAEDA+ GRDGY++DGYRLRVE G V+
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVI 60
Query: 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
V+GLP S SWQDLKDHMR AGDVC++ VFRD G TG+V++ +DM YA+RKLD ++FR
Sbjct: 61 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD-G--TGVVEFVRKEDMTYAVRKLDNTKFR 117
Query: 174 N 174
+
Sbjct: 118 S 118
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 141 (54.7 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
++V L S SWQDLKD+MR+AG+V ++ + R G+V++ S DMK AI KLD +E
Sbjct: 122 LIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRN-EGVVEFASLSDMKTAIEKLDDTE 180
Score = 139 (54.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 34/74 (45%), Positives = 43/74 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP R R++E F YG DI +K GY F+EFEDYRDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGYRLRVELAHG 82
G R+ VE A G
Sbjct: 61 ELLGERVVVEPARG 74
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 254 (94.5 bits), Expect = 3.8e-21, P = 3.8e-21
Identities = 60/167 (35%), Positives = 87/167 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 254 (94.5 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 60/167 (35%), Positives = 87/167 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 254 (94.5 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 60/167 (35%), Positives = 87/167 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 254 (94.5 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 60/167 (35%), Positives = 87/167 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 254 (94.5 bits), Expect = 4.0e-21, P = 4.0e-21
Identities = 60/167 (35%), Positives = 87/167 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTE 164
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 138 (53.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
++V L S SWQDLKD+MR+AG+V ++ + R G++++ Y DMK A+ KLD +E
Sbjct: 109 LIVENLSSRCSWQDLKDYMRQAGEVTYADTNKGRKN-EGVIEFRQYSDMKRALEKLDGTE 167
Score = 130 (50.8 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG L R ++VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYVGKLSYRAREKDVERFFKGYGKILEVDLK-----NGYGFVEFDDPRDADDAVYDLNGK 58
Query: 69 NFDGYRLRVE 78
+ G R+ VE
Sbjct: 59 DLCGKRVIVE 68
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 134 (52.2 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170
++++GLP + SWQDLKD R++G DV +S+ R+ G GIV++ + +D+K A+ KLD
Sbjct: 105 MIISGLPET-SWQDLKDFARQSGLDVVYSETGREPG--RGIVEFETANDLKTAVEKLDGR 161
Query: 171 EFR 173
EF+
Sbjct: 162 EFK 164
Score = 128 (50.1 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
M+ SS LY+GNLP + +++E+ F +G ++K+ G+ F+E+ED DA D
Sbjct: 1 MTEVSSTRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMN---GFGFIEYEDAMDARD 57
Query: 61 AIRGRDGYNFDGYRLRVELAHG 82
+ G +F G RL V+ A G
Sbjct: 58 IVPAFHGSDFKGERLTVQFARG 79
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 133 (51.9 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
++V L S SWQDLKD MR+ G+V F R + G+V++ S+ DMK AI KLD ++
Sbjct: 115 IIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKN-EGVVEFASHSDMKNAIEKLDGTD 173
Score = 122 (48.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R R+VE F YG I +I+LK G+ F+EF+DYRDA+DA+ +G
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLK-----NGFGFVEFDDYRDADDAVYELNGK 60
Query: 69 NFDGYRLRVELA 80
R+ +E A
Sbjct: 61 ELCSERVTIEHA 72
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 58/173 (33%), Positives = 87/173 (50%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 58/173 (33%), Positives = 87/173 (50%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 58/173 (33%), Positives = 87/173 (50%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 60/166 (36%), Positives = 83/166 (50%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
++VG+L R R+VE F YG I +I LK G+ F+EFED+RDA+DAI +G
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLK-----NGFGFVEFEDHRDADDAIYELNGK 60
Query: 69 NF-DGYRLRVELAHG--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQD 125
D R+ +E A G ++V L S SWQD
Sbjct: 61 ELCDERRVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSSRISWQD 120
Query: 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
LKD MR+AG+V + R+ G+V++ SY DMK A+ KLD +E
Sbjct: 121 LKDVMRKAGEVTYVDAHRNNRN-EGVVEFASYSDMKSALEKLDGTE 165
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 57/173 (32%), Positives = 87/173 (50%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++++DLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 58/173 (33%), Positives = 86/173 (49%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++ IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 57/173 (32%), Positives = 86/173 (49%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNSK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 57/173 (32%), Positives = 86/173 (49%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNSK 58
Query: 69 NFDGYRLRVELAHG----------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLP 118
G R+ VE A G G ++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 170
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 60/169 (35%), Positives = 81/169 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXX--XXXXXXVLVTGLPSSAS 122
R+ +E A GG ++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKE 168
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 222 (83.2 bits), Expect = 5.2e-18, P = 5.2e-18
Identities = 55/177 (31%), Positives = 86/177 (48%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R ++++ F YG ++++DLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDLK-----NGYGFVEFEDTRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLV 114
G R+ VE A G G ++V
Sbjct: 59 ELCGERVMVEHARGPRRDRDSYGGGGGGGGGGGRSGYSSRSRTGRDKYGPPVRTEYRLIV 118
Query: 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
L S SWQDLKD MR+AG+V ++ ++R G++++ SY DM+ A+ KLD ++
Sbjct: 119 ENLSSRCSWQDLKDFMRQAGEVTYADAHKERAN-EGVIEFRSYSDMRRALEKLDGTD 174
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 59/171 (34%), Positives = 81/171 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK R G+ F+EF+D RDAEDA+ DG
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLK---R--GFGFVEFDDPRDAEDAVYELDGK 60
Query: 69 NFDGYRLRVELAH----GGXXXXXXXXXXXXXXXXXXXXXXX----XXXXXVLVTGLPSS 120
R+ +E A GG ++V L S
Sbjct: 61 ELCNERVTIEHARVRLRGGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLIVENLSSR 120
Query: 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
SWQDLKD MR+AG+V F+ R G+V++ S+ D+K A+ KL E
Sbjct: 121 VSWQDLKDFMRQAGEVTFADAHRPNLN-EGVVEFASHSDLKNALEKLSGKE 170
>UNIPROTKB|J3KSR8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813 Ensembl:ENST00000584668
Uniprot:J3KSR8
Length = 143
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 38/63 (60%), Positives = 51/63 (80%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
V+V+GLP S SWQDLKDHMR AGDVC++ V+RD G TG+V++ +DM YA+RKLD ++
Sbjct: 18 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-G--TGVVEFVRKEDMTYAVRKLDNTK 74
Query: 172 FRN 174
FR+
Sbjct: 75 FRS 77
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 117 (46.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
++V L SWQDLKD MR+AG+ F+ R+ G G+V++++ +DM+ A+ L+
Sbjct: 100 LIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
Score = 117 (46.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S L+VG +P ++ D F YG I+D L G+ F+E ED RDA D +
Sbjct: 2 SETRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-----NGFGFVEVEDARDARDIVND 56
Query: 65 RDGYNFDGYRLRVELAHG 82
G F G R+ VE A G
Sbjct: 57 FQGKEFMGSRIVVEPARG 74
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 52/153 (33%), Positives = 73/153 (47%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
++VG+L R R+VE F YG I +I LK G+ F+EFED+RDA+DAI +G
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLK-----NGFGFVEFEDHRDADDAIYELNGK 60
Query: 69 NFDGYRLRVELAHG--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQDL 126
R+ +E A G ++V L S SWQDL
Sbjct: 61 ELCDERVTIEHARARRGRGRFAQRFSYYSQSGSSRYGPPVRTEHRIIVENLSSRISWQDL 120
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 159
KD MR+AG+V + R+ G+V++ SY D
Sbjct: 121 KDVMRKAGEVTYVDAHRNNRN-EGVVEFASYSD 152
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 203 (76.5 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 54/174 (31%), Positives = 84/174 (48%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R ++++ F YG +++ DLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGKLSYHVREKDIQRFFGGYGKLMETDLK-----NGYGFVEFEDTRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELA---------HGGXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXVLV 114
G R+ VE A +GG ++V
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYGGGYGGFGGRSNSGYSSRSRSGRDKYGPPVRTEYRLIV 118
Query: 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
L S SWQDLKD MR+AG+V ++ ++R G++++ S+ DM+ A+ KLD
Sbjct: 119 ENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSHSDMRRALDKLD 171
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 118 (46.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G LP R+VE F YG + D+ +K G+ F++F+D RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGYRLRVE 78
G R+ +E
Sbjct: 59 ELCGERVILE 68
Score = 101 (40.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167
+++ L + SWQD+KDH+R+ G + +S+ + R IV +TS+DD++ A+ KL
Sbjct: 114 LVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 118 (46.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G LP R+VE F YG + D+ +K G+ F++F+D RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGYRLRVE 78
G R+ +E
Sbjct: 59 ELCGERVILE 68
Score = 101 (40.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167
+++ L + SWQD+KDH+R+ G + +S+ + R IV +TS+DD++ A+ KL
Sbjct: 114 LVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 56/168 (33%), Positives = 77/168 (45%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+ D RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFV---DPRDADDAVYELDGK 57
Query: 69 NFDGYRLRVELAHG-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASW 123
R+ +E A G ++V L S SW
Sbjct: 58 ELCSERVTIEHARARSRGRGRGRYSDRFSSRRPRSDRRSAPPLRTENRLIVENLSSRVSW 117
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
QDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 118 QDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYSDLKNAIEKLSGKE 164
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 170 (64.9 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S +YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG
Sbjct: 38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRG 95
Query: 65 RDGYNFDGYRLRVELAHG 82
DG G R+RVEL+ G
Sbjct: 96 LDGKVICGSRVRVELSTG 113
Score = 36 (17.7 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 133 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 163
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 168 (64.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 168 (64.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 168 (64.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 168 (64.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 168 (64.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 44/129 (34%), Positives = 65/129 (50%)
Query: 47 YAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXX- 105
Y F+EF+D RDA+DA+ +G + G R+ VE A G
Sbjct: 38 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDSSYGSGRSGYGYRRSGRDKY 97
Query: 106 ---XXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162
++V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK
Sbjct: 98 GPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFKSYSDMKR 156
Query: 163 AIRKLDRSE 171
A+ KLD +E
Sbjct: 157 ALEKLDGTE 165
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 45/129 (34%), Positives = 66/129 (51%)
Query: 47 YAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXX 102
Y F+EF+D RDA+DA+ +G + G R+ VE A G G
Sbjct: 16 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKY 75
Query: 103 XXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162
++V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK
Sbjct: 76 GPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKR 134
Query: 163 AIRKLDRSE 171
A+ KLD +E
Sbjct: 135 ALEKLDGTE 143
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/129 (34%), Positives = 66/129 (51%)
Query: 47 YAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXX 102
Y F+EF+D RDA+DA+ +G + G R+ VE A G G
Sbjct: 41 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKY 100
Query: 103 XXXXXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162
++V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK
Sbjct: 101 GPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKR 159
Query: 163 AIRKLDRSE 171
A+ KLD +E
Sbjct: 160 ALEKLDGTE 168
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E+ F KYGP+ ++ + PPG+AF+EFED RDAEDA RG DG
Sbjct: 13 VYVGNLGSSASKYEIENAFSKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRGLDGT 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVE++ G
Sbjct: 71 RCCGTRIRVEMSSG 84
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 159 (61.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 37/79 (46%), Positives = 47/79 (59%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
R +YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+
Sbjct: 6 RYETKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVL 63
Query: 64 GRDGYNFDGYRLRVELAHG 82
G DG G R+RVE++ G
Sbjct: 64 GLDGKIICGSRVRVEVSTG 82
Score = 36 (17.7 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 102 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 132
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 188 (71.2 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 44/129 (34%), Positives = 65/129 (50%)
Query: 47 YAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXX- 105
Y F+EF+D RDA+DA+ +G + G R+ VE A G
Sbjct: 1 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDSSYGSGRSGYGYRRSGRDKY 60
Query: 106 ---XXXXXXVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162
++V L S SWQDLKD+MR+AG+V ++ + R G++++ SY DMK
Sbjct: 61 GPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN-EGVIEFKSYSDMKR 119
Query: 163 AIRKLDRSE 171
A+ KLD +E
Sbjct: 120 ALEKLDGTE 128
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 157 (60.3 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I P G+AF+EFED RDAED++RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFGYYGPLRSV--WIARNPAGFAFVEFEDPRDAEDSVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
Score = 35 (17.4 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRTRSRSRS 134
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AF+E++D RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGYRLRVELAHG 82
G R RVEL+ G
Sbjct: 63 RICGVRARVELSTG 76
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AF+E++D RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGYRLRVELAHG 82
G R RVEL+ G
Sbjct: 63 RICGVRARVELSTG 76
>UNIPROTKB|E1C270 [details] [associations]
symbol:E1C270 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KPRSSHR
EMBL:AADN02019572 EMBL:AADN02019573 IPI:IPI00578317
ProteinModelPortal:E1C270 Ensembl:ENSGALT00000001462 Uniprot:E1C270
Length = 348
Score = 142 (55.0 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
++V L S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 113 LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTE 171
Score = 62 (26.9 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39
+Y+G L R ++++ F YG ++++DLK
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLK 34
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F KYGP+ ++ + PPG+AF+EFED RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVE++ G
Sbjct: 71 RCCGTRIRVEMSSG 84
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 2 SSRSS-RT----LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYR 56
SSRSS RT +YVG+L E+E F YGP+ + + PPG+AF+E+ED R
Sbjct: 4 SSRSSSRTSDCKVYVGDLGNGAAKGELERAFSYYGPLRSV--WVARNPPGFAFVEYEDAR 61
Query: 57 DAEDAIRGRDGYNFDGYRLRVELAHG 82
DAEDA++G DG G R+RVEL++G
Sbjct: 62 DAEDAVKGMDGKVLCGARVRVELSNG 87
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 170 (64.9 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 40/78 (51%), Positives = 50/78 (64%)
Query: 6 SRT-LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S+T +YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG
Sbjct: 36 SKTKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRG 93
Query: 65 RDGYNFDGYRLRVELAHG 82
DG G R+RVEL+ G
Sbjct: 94 LDGKVICGSRVRVELSTG 111
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 38/74 (51%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 115 (45.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L +++E F YG I D+ LK G+ F+EF+D RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGYRLRVELA--HGG 83
G R+ ++ + GG
Sbjct: 60 ELGGERVILDYSKPRGG 76
Score = 77 (32.2 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
V+V L S SWQDLKD +RR G + +++ + ++ + + D+K I K D
Sbjct: 131 VVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPN--EALLCFATPSDLKRCIEKCD 186
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 115 (45.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L +++E F YG I D+ LK G+ F+EF+D RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGYRLRVELA--HGG 83
G R+ ++ + GG
Sbjct: 60 ELGGERVILDYSKPRGG 76
Score = 77 (32.2 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
V+V L S SWQDLKD +RR G + +++ + ++ + + D+K I K D
Sbjct: 131 VVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPN--EALLCFATPSDLKRCIEKCD 186
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDATDAVRELDGR 68
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 69 TLCGCRVRVELSNG 82
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S R +YVG+L + R ++E +F YG + + I PPG+AF+EFE RDA DA+RG
Sbjct: 6 SDRKVYVGDLGNNARKNDLEYVFGAYGSLRSV--WIARNPPGFAFVEFESARDAADAVRG 63
Query: 65 RDGYNFDGYRLRVELAHG 82
DG G R RVEL+ G
Sbjct: 64 LDGRTVCGRRARVELSTG 81
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGG 69
Query: 69 NFDGYRLRVELAHG 82
G R+RVEL++G
Sbjct: 70 TLCGCRVRVELSNG 83
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 105 (42.0 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65
++ L+V L D EV+D F + P+V++ L GYAF+ FE+ DA+ A+
Sbjct: 8 TKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLM-----EGYAFVTFENEDDAKQALELL 62
Query: 66 DGYNFDGYRLRVELA 80
+ F+G +L++E A
Sbjct: 63 NDAEFNGEKLQIEFA 77
Score = 94 (38.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR--DRGGMTGIVDYTSYDDMKYAIRKL 167
+L+T L +WQD+KD +R D + +VF D G T + + S +D+ AI L
Sbjct: 90 LLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAIPLL 149
Query: 168 DRSEFRN 174
D++ FR+
Sbjct: 150 DKAVFRD 156
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 105 (42.0 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65
++ L+V L D EV+D F + P+V++ L GYAF+ FE+ DA+ A+
Sbjct: 8 TKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLM-----EGYAFVTFENEDDAKQALELL 62
Query: 66 DGYNFDGYRLRVELA 80
+ F+G +L++E A
Sbjct: 63 NDAEFNGEKLQIEFA 77
Score = 94 (38.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR--DRGGMTGIVDYTSYDDMKYAIRKL 167
+L+T L +WQD+KD +R D + +VF D G T + + S +D+ AI L
Sbjct: 90 LLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAIPLL 149
Query: 168 DRSEFRN 174
D++ FR+
Sbjct: 150 DKAVFRD 156
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 16 VYVGNLGNSGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDATDAVRELDGR 73
Query: 69 NFDGYRLRVELAHG 82
G R+RVE+++G
Sbjct: 74 TLCGCRVRVEMSNG 87
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 163 (62.4 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMK-----RDYAFVEFGDPRDADDARHYLDGR 67
Query: 69 NFDGYRLRVELAHG 82
+FDG R+ VE + G
Sbjct: 68 DFDGSRITVEFSRG 81
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 162 (62.1 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMK-----RDYAFVEFSDPRDADDARYYLDGR 67
Query: 69 NFDGYRLRVELAHG 82
+FDG R+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 42/123 (34%), Positives = 57/123 (46%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPSSASWQ 124
+ G R+ VE A G G ++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLK 127
DLK
Sbjct: 119 DLK 121
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 37/75 (49%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G I + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 NFDGYRLRVELAHGG 83
N G+R+ GG
Sbjct: 62 N--GWRVEQSHNRGG 74
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/73 (50%), Positives = 46/73 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 NFDGYRLRVELAH 81
N G+R VE +H
Sbjct: 62 N--GWR--VEQSH 70
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 156 (60.0 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 39/79 (49%), Positives = 49/79 (62%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
R ++VGN +TR ++E LF KYG + +D+K GYAF+ FED RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMK-----SGYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNFDGY---RLRVELAHG 82
+ F GY RL VE A G
Sbjct: 57 NFPF-GYEKRRLSVEWAKG 74
>UNIPROTKB|F1M582 [details] [associations]
symbol:F1M582 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00700000104103 IPI:IPI00557396
Ensembl:ENSRNOT00000034162 Uniprot:F1M582
Length = 284
Score = 154 (59.3 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 44/128 (34%), Positives = 61/128 (47%)
Query: 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGXXXXXXXXXXXXXXXXXXXXXX 105
GY F+EFED RDA+DAI + G R VE A G
Sbjct: 6 GYDFMEFEDSRDADDAIYELNSKR--GERRIVEHAQGPRCASTGSRSGGSGGYSRQRTGR 63
Query: 106 XXXXXXVL-----VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160
VL + L S +SWQDLKD MR+ G+ ++ ++R G+++++SY DM
Sbjct: 64 DKYGPPVLQNTDLLRNLSSRSSWQDLKDFMRQ-GEGTYADAHKERTD-EGVIEFSSYSDM 121
Query: 161 KYAIRKLD 168
K A+ KLD
Sbjct: 122 KCALNKLD 129
>UNIPROTKB|J3QQV5 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471109
UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3QQV5 Ensembl:ENST00000583741 Uniprot:J3QQV5
Length = 65
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYR 56
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED R
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPR 65
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + +PPG+AF++F+D RDAEDAIR DG
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSV--WVARKPPGFAFIDFDDRRDAEDAIRDLDGK 61
Query: 69 NFDGYRLRVELAHG 82
N G+R+ + G
Sbjct: 62 N--GWRVELSTKAG 73
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 149 (57.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 38/77 (49%), Positives = 47/77 (61%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
R +YVGN DTR ++E LF K+G + +D+K GYAF+ FED RDAEDAIR D
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMK-----SGYAFVYFEDERDAEDAIRRTD 56
Query: 67 GYNFDGY---RLRVELA 80
F GY +L VE A
Sbjct: 57 NTTF-GYGRRKLSVEWA 72
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 127 (49.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDA+ ++
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAKPLLKSSKSR 70
Query: 69 NFDGYRLRVELAHG 82
G R+RVE++ G
Sbjct: 71 VICGSRVRVEVSTG 84
Score = 36 (17.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 104 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 134
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/73 (49%), Positives = 46/73 (63%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + ++ + RPPGYAFLEF+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 NFDGYRLRVELAH 81
N G+R VEL+H
Sbjct: 62 N--GWR--VELSH 70
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 117 (46.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGY-RLRVELA 80
RG D F G+ R+ LA
Sbjct: 129 RGLDNTEFQGWWSTRLPLA 147
Score = 40 (19.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 117 (46.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDG 72
RG D F G
Sbjct: 129 RGLDNTEFQG 138
Score = 40 (19.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 117 (46.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDG 72
RG D F G
Sbjct: 129 RGLDNTEFQG 138
Score = 40 (19.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 117 (46.2 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRL 75
RG D F +L
Sbjct: 129 RGLDNTEFQDIQL 141
Score = 38 (18.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 158 DDMKYAIRKLDRSEFRN 174
+D AIR LD +EF++
Sbjct: 122 EDAVEAIRGLDNTEFQD 138
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 145 (56.1 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 145 (56.1 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 145 (56.1 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 117 (46.2 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNF 70
RG D F
Sbjct: 129 RGLDNTEF 136
Score = 37 (18.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LY+G +P + R R+VE YG I +I +K G+AF++FED RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--YRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LY+G +P + R R+VE YG I +I +K G+AF++FED RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--YRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/80 (43%), Positives = 47/80 (58%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
M +R ++ +YVGNL E+E YG + + I PPG+AF+EFED RDAED
Sbjct: 9 MKTRETK-VYVGNLGTGAGKGELERALSYYGSLRTV--WIARNPPGFAFVEFEDPRDAED 65
Query: 61 AIRGRDGYNFDGYRLRVELA 80
+RG DG G +RVEL+
Sbjct: 66 LVRGLDGKVICGSGVRVELS 85
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDA 58
+ RS R+++VGN+ D + +F K G ++ I + + +P GY F+EF D + A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 59 EDAIRGRDGYNFDGYRLRVELAHGG 83
E AIR +GY G LRV+ A GG
Sbjct: 73 EVAIRNLNGYELSGRILRVDSAAGG 97
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/73 (47%), Positives = 43/73 (58%)
Query: 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69
YVGNL E+E F YGP+ + I PPG+AF+ FED RDAEDA+ G G
Sbjct: 9 YVGNLGTGVGKGELERAFSYYGPLRTV--WIARNPPGFAFV-FEDPRDAEDAVGGLGGKV 65
Query: 70 FDGYRLRVELAHG 82
G R+RVEL+ G
Sbjct: 66 ICGSRVRVELSTG 78
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 140 (54.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ D R ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDKKWICGRQIEIQFAQG 88
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 138 (53.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ ++R ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWVCGRQIEIQFAQG 88
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG +++IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHG 82
G R+ VE A G
Sbjct: 59 ELCGERVIVEHARG 72
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 126 (49.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 37 (18.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 137 (53.3 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 34/71 (47%), Positives = 43/71 (60%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDA 61
+S +LYVGNLP ++V +LF YG IVD++L K R G AFL+FE RDAE A
Sbjct: 125 TSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVA 184
Query: 62 IRGRDGYNFDG 72
G D Y +G
Sbjct: 185 KYGMDRYMIEG 195
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 139 (54.0 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 33/74 (44%), Positives = 44/74 (59%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
+ ++ GN D R ++E LF KYG + +D+K G+AF+ ED RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNFD--GYRLRVE 78
+ F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 114 (45.2 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDA +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAXXXXASKPLL 70
Query: 69 N-FDGYRLRVELAHG 82
G R+RVE++ G
Sbjct: 71 KVICGSRVRVEVSTG 85
Score = 36 (17.7 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174
DR G + +YD +Y+ R+ RS R+
Sbjct: 105 DRCYECGEKGHYAYDCHRYSRRRRSRSRSRS 135
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|F1Q237 [details] [associations]
symbol:F1Q237 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104403 EMBL:AAEX03004837
Ensembl:ENSCAFT00000004966 OMA:DNTRSED Uniprot:F1Q237
Length = 261
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ +TR ++ F +YGPIVD+ + + P G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADNTRSEDLPREFGRYGPIVDVYVPLDFYTRHPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 125 (49.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 40 (19.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
Q+L+ G V + +D V +D AIR LD +EF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKDYA----FVHMERAEDAVEAIRGLDNTEFQ 137
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/74 (43%), Positives = 44/74 (59%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
+ ++ GN D R ++E LF KYG + +D+K G+AF+ ED RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNFD--GYRLRVE 78
+ + G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L DT + +ED F KYG I ++ + + R G+ F+ FE+ DA+DA+ G
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 66 DGYNFDGYRLRV-ELAHGG 83
+G + DG +RV E GG
Sbjct: 67 NGKSVDGRTIRVDEAGKGG 85
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 138 (53.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELAHGG 83
A+DA+ +G + DG ++RV+ A GG
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGGG 85
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/86 (44%), Positives = 47/86 (54%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYR 56
MS RS RTLYV R RE+ F +GP++ D+ IP RP +AF+E+ED R
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRP--FAFVEYEDSR 58
Query: 57 DAEDAIRGRDGYNFD--GYRLRVELA 80
DAEDA G + G LRVE A
Sbjct: 59 DAEDAYYEVHGRRLERGGGVLRVEWA 84
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 126 (49.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
Score = 117 (46.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + GP+V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 131 (51.2 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPR---PPGYAFLEFEDYRDAEDAIRG 64
TL V NL T + +F KYG + D+ + P P G+AF+ F D RDA+DA
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAELDGRELRVQVARYG 93
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
M + +YVGNL + ++E F KYG + + + PPG+AF+EFE DAE
Sbjct: 1 MGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAF--NPPGFAFVEFEHRDDAEK 58
Query: 61 AIRGRDGYNFDGYRLRVELAHG 82
A +G G +LRVE++ G
Sbjct: 59 ACDILNGSELLGSQLRVEISKG 80
>ZFIN|ZDB-GENE-081104-82 [details] [associations]
symbol:si:ch1073-335m2.2 "si:ch1073-335m2.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-081104-82 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU652212 EMBL:CU693473 IPI:IPI00932066
Ensembl:ENSDART00000110807 ArrayExpress:F1Q618 Bgee:F1Q618
Uniprot:F1Q618
Length = 3103
Score = 144 (55.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
+++RTL++GNL T +++ D+F ++G IVDID+K P YAF+++ D AI+
Sbjct: 433 KATRTLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQYAFVQYSDIASVCKAIK 492
Query: 64 GRDGYNFDGYRLRVELAHG 82
DG RL V+L G
Sbjct: 493 KMDGEYLGTNRLNVQLGFG 511
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ TR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
+ G ++ ++ A G
Sbjct: 71 LNRKWVCGRQIEIQFAQG 88
>UNIPROTKB|F1P4F6 [details] [associations]
symbol:Gga.8379 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 GO:GO:0000375
GeneTree:ENSGT00700000104403 OMA:FAYVQYT EMBL:AADN02043720
IPI:IPI00584494 Ensembl:ENSGALT00000006576 Uniprot:F1P4F6
Length = 262
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+ + D RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYSQIVDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
D G ++ ++ A G
Sbjct: 71 LDRKWICGRQIEIQFAQG 88
>UNIPROTKB|H0Y5U7 [details] [associations]
symbol:SPEN "Msx2-interacting protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL450998
EMBL:AL034555 HGNC:HGNC:17575 ChiTaRS:SPEN PRIDE:H0Y5U7
Ensembl:ENST00000442985 Bgee:H0Y5U7 Uniprot:H0Y5U7
Length = 297
Score = 130 (50.8 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
+++RTL++GNL T ++ ++F ++G IVDID+K P YAFL++ D AI+
Sbjct: 175 KATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIK 234
Query: 64 GRDGYNFDGYRLRV 77
DG RL++
Sbjct: 235 KMDGEYLGNNRLKL 248
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRG 64
+L++ N+ TR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70
Query: 65 RDGYNFDGYRLRVELAHG 82
+ G ++ ++ A G
Sbjct: 71 LNRKWVCGRQIEIQFAQG 88
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 94 (38.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAG-DVCFSQV-FRDRGGMTGIVDYTSYDDMKYAIRKLDR 169
+ + LP SWQDLKD R + FS V RD G TG +++ S + + A+ +L+
Sbjct: 202 ITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG-TGALEFPSEEILVEALERLNN 260
Query: 170 SEFRNA 175
EFR +
Sbjct: 261 IEFRGS 266
Score = 83 (34.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S+ L+V P D + E+ ++F +GP+ ++ + G+AF+EFE+ A AI
Sbjct: 123 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEE 177
Query: 65 RDGYNFDGYRLRV 77
G +F L V
Sbjct: 178 VHGKSFANQPLEV 190
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 132 (51.5 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP---GYAFLEFEDYRDAEDA 61
+S ++VGNL + ++ DLF YG ++D D K+ +P GYAF+ E DAE A
Sbjct: 81 NSTKVFVGNLCASCSVEDLYDLFSPYGKVLDCD-KVKTKPSSLTGYAFVYMEHKEDAEQA 139
Query: 62 IRGRDGYNFDGYRLRVELA 80
I G G F G L VEL+
Sbjct: 140 IEGLHGTTFMGRPLAVELS 158
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELA 80
R+ +E A
Sbjct: 61 ELCSERVTIEHA 72
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELA 80
R+ +E A
Sbjct: 61 ELCSERVTIEHA 72
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELA 80
R+ +E A
Sbjct: 61 ELCSERVTIEHA 72
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELA 80
R+ +E A
Sbjct: 61 ELCSERVTIEHA 72
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 128 (50.1 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 3 SRSSRTLYVGNL-PGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDA 61
S++S L+VGN+ P T + E+ F +YGP+++ D+ YAF+ E DA +A
Sbjct: 74 SKASTKLHVGNISPTCTNL-ELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEA 127
Query: 62 IRGRDGYNFDGYRLRVELA 80
IRG D F G R+RV+L+
Sbjct: 128 IRGLDNTEFQGKRMRVQLS 146
Score = 109 (43.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHH 58
Query: 69 NFDGYRLRVE 78
G + VE
Sbjct: 59 KLHGVCINVE 68
Score = 37 (18.1 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 158 DDMKYAIRKLDRSEFR 173
+D AIR LD +EF+
Sbjct: 122 EDAVEAIRGLDNTEFQ 137
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 93 (37.8 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170
+++ +P + +WQ L+D R GDV F+++ RG G+V + D + AI +D S
Sbjct: 565 IIIKNVPITCTWQTLRDKFREIGDVKFAEI---RGNDVGVVRFFKERDAELAIALMDGS 620
Score = 88 (36.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 3 SRSSRT--LYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPP--RPPGYAFLEFEDYRD 57
SR R +Y+ N+P D R ++++DLF + G I + L + G +EF+D +
Sbjct: 51 SRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPEN 110
Query: 58 AEDAIRGRDGYNFDGYRLRVELAHG 82
+ A+ + Y +G L V+ HG
Sbjct: 111 VQKALEKMNRYEVNGRELVVKEDHG 135
Score = 52 (23.4 bits), Expect = 0.00040, Sum P(2) = 0.00039
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPR--PPGYAFLEFEDYRDAEDAIRGRD 66
++V NL ++++ +F G + +DL + G+A +E++ +A AI D
Sbjct: 234 VFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLD 293
Query: 67 GYNFDGYRLRVEL 79
R+ V L
Sbjct: 294 RQMLFDRRMTVRL 306
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 122 (48.0 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 130 (50.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 17 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 76
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 77 AMRNLNGREFSGRALRVDNA 96
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 127 (49.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67
+LY+G L +T + + D F KYG I D+K YAF+E+++ RDA+DA++ +G
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVK-KTNGRCYAFVEYKERRDADDALKALNG 60
Query: 68 YNFDGYRLRVELAHGG 83
++ VE A GG
Sbjct: 61 TTLLNSKISVEWAKGG 76
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 129 (50.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
+ R +YVG + T +ED F K+G ++ D+K GYAF+EF++ + A DAI
Sbjct: 173 AERRVYVGRISNKTTRESLEDSFLKFGKVLSCDVK-----NGYAFVEFDNEKSARDAIEE 227
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG ++ VE +H G
Sbjct: 228 MHDSIVDGEKILVEKSHSG 246
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 123 (48.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L DT + +E+ F KYG I +D+ + R G+ F+ FE+ DA+DA+
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 66 DGYNFDGYRLRVELA 80
+G DG +RV+ A
Sbjct: 85 NGKQVDGRMIRVDEA 99
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 122 (48.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP---PGYAFLEFEDYRDAEDAIRGR 65
++V N+ + + ++ D+F +YG I +I L I R GYA +E+E +AEDAI+
Sbjct: 73 IFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNG 132
Query: 66 DGYNFDGYRLRVELA 80
GY G +L V+ A
Sbjct: 133 SGYELAGLKLSVDWA 147
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVE 78
A+DA+ +G + DG ++RV+
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L +T + +E +F KYG IV++ L + + G+AF+ FE DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ DA+DA+ G
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 66 DGYNFDGYRLRVELA 80
+G DG ++RV+ A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
+S R+++VGN+P + +++++F + GP++ + L + +P G+ F E++D A
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +GY G LRV+ A
Sbjct: 73 AMRNLNGYEIGGRTLRVDNA 92
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 73 AMRNLNGREFSGRALRVDNA 92
>UNIPROTKB|F1MB97 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:DAAA02043252 IPI:IPI01003198
Ensembl:ENSBTAT00000055533 Uniprot:F1MB97
Length = 636
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
+++RTL++GNL T ++ ++F ++G IVDID+K P YAFL++ D AI+
Sbjct: 521 KATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIK 580
Query: 64 GRDGYNFDGYRLRV 77
DG RL++
Sbjct: 581 KMDGEYLGNNRLKL 594
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/86 (34%), Positives = 48/86 (55%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
MSS + L+VG L +T + +ED F +GPI ++ + + R G+ F+ F D
Sbjct: 1 MSSEEGK-LFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEH 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELAHGG 83
A DA+R +G + DG ++RV+ H G
Sbjct: 60 ASDAMRAMNGESLDGRQIRVD--HAG 83
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 121 (47.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAILDGRELRVQMARYG 93
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAED 60
RS R+++VGN+P + +++D+F + G +V L + +P GY F E++D A
Sbjct: 21 RSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALS 80
Query: 61 AIRGRDGYNFDGYRLRVELA 80
A+R +G F G LRV+ A
Sbjct: 81 AMRNLNGREFSGRALRVDNA 100
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 121 (47.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGALLDGRELRVQMARYG 93
>DICTYBASE|DDB_G0268004 [details] [associations]
symbol:snrp70 "U1 small nuclear ribonucleoprotein 70
kDa protein" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0268004 GenomeReviews:CM000150_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724
HSSP:Q14103 GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
RefSeq:XP_647483.1 ProteinModelPortal:Q55FQ0 STRING:Q55FQ0
EnsemblProtists:DDB0233134 GeneID:8616290 KEGG:ddi:DDB_G0268004
OMA:YLMEPAP Uniprot:Q55FQ0
Length = 459
Score = 113 (44.8 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDI----DLKIPPRPPGYAFLEFEDYRDAEDAI 62
+T++V + T +++E F ++GPI + D P + GYAF+EFE RD + A
Sbjct: 99 KTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEFERERDMKAAY 158
Query: 63 RGRDGYNFDGYRLRVELAHG 82
+ DG D R+ V++ G
Sbjct: 159 KQADGMKIDDRRIVVDIERG 178
Score = 35 (17.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTG 150
+DH G+ + RDRGG G
Sbjct: 293 RDHRGSGGERERERDQRDRGGDRG 316
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 119 (46.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>SGD|S000003012 [details] [associations]
symbol:RNA15 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
KO:K14407 InterPro:IPR026896 Pfam:PF14304
GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
GermOnline:YGL044C Uniprot:P25299
Length = 296
Score = 123 (48.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---RPPGYAFLEFEDYRDAEDAI 62
SR +Y+G++P D ++ DL GP++++ + P R GYAF+EF D + A+
Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76
Query: 63 RGRDGY 68
R +GY
Sbjct: 77 RNLNGY 82
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 12 GNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
GN+P + +++D+F + GP+V L + +P GY F E++D A A+R +G
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 69 NFDGYRLRVELA 80
F G LRV+ A
Sbjct: 62 EFSGRALRVDNA 73
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65
+R +YVGN+P D +E+E +F GPI I + RPPG+AF+ F+ A DA++
Sbjct: 16 NRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMA--KRPPGFAFVTFKRTVHAFDAVKYL 73
Query: 66 DGYNFDGYRLRVEL 79
+G +VE+
Sbjct: 74 NGKKICDLEAKVEM 87
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 125 (49.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---RPPGYAFLEFEDYRDAEDAI 62
S +YVGN+P + +V D+F + GP+ L I P +P GY F E+ D A A+
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
Query: 63 RGRDGYNFDGYRLRVE 78
R + Y+ RLRV+
Sbjct: 64 RNLNNYDAGTRRLRVD 79
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 119 (46.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRG 64
+L V NL T + +F KYG + D+ + + G+AF+ F D RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGYRLRVELAHGG 83
DG DG LRV++A G
Sbjct: 75 MDGAVLDGRELRVQMARYG 93
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 122 (48.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRD 57
M+S + L+VG L DT + +E +F KYG I ++ + + R G+ F+ FE+ D
Sbjct: 1 MASDEGK-LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 58 AEDAIRGRDGYNFDGYRLRVELA 80
A+DA+ +G + DG ++RV+ A
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L+VG L +T +E +F KYG + ++ + + R G+ F+ FE+ DA+DA+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 120 (47.3 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L +T + +E +F KYG IV++ L + + G+AF+ FE DA+DA R
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++VE A
Sbjct: 72 NGKSLDGKAIKVEQA 86
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 120 (47.3 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L +T + +E +F KYG IV++ L + + G+AF+ FE DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 122 (48.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP----GYAFLEFEDYRDAEDAIRG 64
L++G L +T + +E +F KYG IV++ L I R G+AF+ FE DA+DA R
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEV-LLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 65 RDGYNFDGYRLRVELA 80
+G + DG ++VE A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 120 (47.3 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGR 65
L++G L +T + +E +F KYG IV++ L + + G+AF+ FE DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGYRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>WB|WBGene00017929 [details] [associations]
symbol:grld-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 EMBL:FO080227 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 RefSeq:NP_741283.1
ProteinModelPortal:H2KYB8 SMR:H2KYB8 PRIDE:H2KYB8
EnsemblMetazoa:F29C4.7a.1 EnsemblMetazoa:F29C4.7a.2 GeneID:176827
KEGG:cel:CELE_F29C4.7 CTD:176827 WormBase:F29C4.7a OMA:ERNDCAR
Uniprot:H2KYB8
Length = 520
Score = 111 (44.1 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPG-YAFLEFEDYRDAEDA 61
++RTL+VGN+P D + RE+ +F ++G + ++D+K P YAF+ F+ A A
Sbjct: 167 ATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
Score = 34 (17.0 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 134 GDVCFSQVFRDRGGMTGIVDYTSYD 158
G C ++ + G G V+ YD
Sbjct: 259 GSWCDKEILQKAFGEFGFVENIDYD 283
>ASPGD|ASPL0000065410 [details] [associations]
symbol:AN7456 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACD01000129 EMBL:BN001304 eggNOG:COG0724
HOGENOM:HOG000276232 KO:K12833 OrthoDB:EOG4HB1W3 RefSeq:XP_680725.1
ProteinModelPortal:Q5AW74 SMR:Q5AW74 STRING:Q5AW74
EnsemblFungi:CADANIAT00000549 GeneID:2869562 KEGG:ani:AN7456.2
Uniprot:Q5AW74
Length = 172
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
++ ++R L+V NL + ++ DLF K+GPI I I G AF+ +ED DA+
Sbjct: 64 LAPEANRILFVKNLNYNVTAEQLFDLFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQ 123
Query: 61 AIRGRDGYNFDGYRLRVELAH 81
A +G+NF R V L H
Sbjct: 124 ACDKLNGFNFQN-RYLVVLYH 143
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65
+R L+V NL + E+ DLF K+GPI + I G AF+ +ED DA+ A
Sbjct: 12 NRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDKL 71
Query: 66 DGYNFDGYRLRVELAH 81
+G+NF R V L H
Sbjct: 72 NGFNFQN-RYLVVLYH 86
WARNING: HSPs involving 244 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.142 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 297 148 0.00068 104 3 11 22 0.45 31
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 494
No. of states in DFA: 591 (63 KB)
Total size of DFA: 144 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.71u 0.17s 13.88t Elapsed: 00:00:01
Total cpu time: 13.73u 0.17s 13.90t Elapsed: 00:00:01
Start: Thu May 9 22:21:11 2013 End: Thu May 9 22:21:12 2013
WARNINGS ISSUED: 2