Query 022425
Match_columns 297
No_of_seqs 287 out of 2805
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.4E-33 1.8E-37 236.3 21.6 163 4-188 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 2.2E-29 4.7E-34 186.9 22.0 183 1-189 1-192 (241)
3 TIGR01645 half-pint poly-U bin 100.0 5.4E-30 1.2E-34 230.0 21.8 171 5-188 106-283 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.4E-30 1.8E-34 222.6 21.2 161 5-187 2-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.5E-29 7.6E-34 225.9 22.3 172 3-187 86-264 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.7E-28 1.5E-32 210.6 24.5 181 5-189 88-349 (352)
7 KOG0148 Apoptosis-promoting RN 100.0 6.1E-29 1.3E-33 195.1 15.0 165 7-177 63-230 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.7E-28 1.5E-32 217.4 22.4 171 5-188 1-173 (481)
9 KOG0109 RNA-binding protein LA 100.0 5.2E-29 1.1E-33 197.4 11.1 145 7-182 3-147 (346)
10 TIGR01628 PABP-1234 polyadenyl 100.0 7.3E-28 1.6E-32 222.2 20.4 157 8-186 2-164 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-27 4.3E-32 213.3 21.6 176 6-189 58-307 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.7E-27 1E-31 211.9 23.1 183 4-188 273-479 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.4E-26 3E-31 211.9 22.4 177 5-185 294-498 (509)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-26 3.2E-31 211.6 22.6 177 3-187 172-373 (509)
15 KOG0131 Splicing factor 3b, su 99.9 3.5E-27 7.5E-32 175.0 12.8 161 4-187 7-175 (203)
16 KOG0145 RNA-binding protein EL 99.9 4.2E-27 9.2E-32 183.8 13.7 163 4-188 39-208 (360)
17 KOG0117 Heterogeneous nuclear 99.9 1.7E-26 3.7E-31 193.1 17.3 175 6-188 83-330 (506)
18 TIGR01628 PABP-1234 polyadenyl 99.9 2.8E-26 6.2E-31 211.7 19.1 178 5-188 177-363 (562)
19 TIGR01622 SF-CC1 splicing fact 99.9 1.9E-25 4.2E-30 201.6 22.6 176 6-185 186-444 (457)
20 KOG0144 RNA-binding protein CU 99.9 3.7E-26 8E-31 190.3 13.1 166 5-191 33-208 (510)
21 KOG0127 Nucleolar protein fibr 99.9 4.5E-25 9.8E-30 188.8 16.6 178 6-187 5-194 (678)
22 KOG0145 RNA-binding protein EL 99.9 7.4E-25 1.6E-29 171.3 15.5 172 6-177 127-350 (360)
23 KOG0127 Nucleolar protein fibr 99.9 4.4E-23 9.5E-28 176.7 18.8 162 6-167 117-354 (678)
24 KOG0106 Alternative splicing f 99.9 2.6E-23 5.7E-28 162.3 11.5 163 7-183 2-165 (216)
25 KOG0124 Polypyrimidine tract-b 99.9 8.5E-24 1.8E-28 172.9 8.2 168 6-186 113-287 (544)
26 KOG0123 Polyadenylate-binding 99.9 5.5E-22 1.2E-26 170.8 17.4 147 7-186 2-150 (369)
27 KOG4207 Predicted splicing fac 99.9 1.8E-21 3.9E-26 147.4 16.3 82 4-85 11-95 (256)
28 KOG0110 RNA-binding protein (R 99.9 3.5E-22 7.5E-27 176.3 13.8 165 7-186 516-690 (725)
29 KOG0107 Alternative splicing f 99.9 3.9E-21 8.5E-26 142.0 15.4 80 4-85 8-87 (195)
30 KOG4206 Spliceosomal protein s 99.9 9.2E-21 2E-25 146.5 17.0 171 2-173 5-209 (221)
31 TIGR01645 half-pint poly-U bin 99.9 7.8E-20 1.7E-24 164.8 22.4 78 5-82 203-283 (612)
32 KOG4676 Splicing factor, argin 99.9 1.6E-21 3.6E-26 160.7 8.9 167 4-172 5-213 (479)
33 KOG0148 Apoptosis-promoting RN 99.8 8.4E-21 1.8E-25 149.5 11.1 138 1-189 1-142 (321)
34 KOG0147 Transcriptional coacti 99.8 1.8E-20 3.8E-25 161.4 13.7 174 5-179 277-522 (549)
35 KOG0123 Polyadenylate-binding 99.8 2.9E-20 6.3E-25 160.1 15.0 158 4-174 74-235 (369)
36 KOG0107 Alternative splicing f 99.8 2.3E-19 4.9E-24 132.7 17.1 80 107-191 8-87 (195)
37 PLN03134 glycine-rich RNA-bind 99.8 1.5E-19 3.2E-24 136.1 13.2 82 4-85 32-116 (144)
38 KOG4207 Predicted splicing fac 99.8 6.6E-19 1.4E-23 133.6 16.2 82 103-188 7-92 (256)
39 KOG1457 RNA binding protein (c 99.8 6.2E-19 1.3E-23 135.3 15.2 170 5-174 33-275 (284)
40 KOG0147 Transcriptional coacti 99.8 1.1E-20 2.3E-25 162.8 6.0 170 3-179 176-352 (549)
41 KOG0144 RNA-binding protein CU 99.8 2.8E-19 6E-24 149.6 13.7 178 6-183 124-502 (510)
42 KOG1548 Transcription elongati 99.8 3.1E-18 6.7E-23 139.6 18.5 182 3-188 131-351 (382)
43 KOG0146 RNA-binding protein ET 99.8 5.4E-19 1.2E-23 139.2 13.6 177 5-181 18-361 (371)
44 KOG4205 RNA-binding protein mu 99.8 2.9E-19 6.4E-24 148.7 11.9 158 1-174 1-165 (311)
45 KOG0113 U1 small nuclear ribon 99.8 1.5E-17 3.2E-22 133.1 16.4 86 3-88 98-186 (335)
46 KOG0121 Nuclear cap-binding pr 99.8 1.3E-18 2.8E-23 121.9 7.1 78 4-81 34-114 (153)
47 PF00076 RRM_1: RNA recognitio 99.7 5.1E-18 1.1E-22 112.5 7.4 68 9-76 1-70 (70)
48 KOG4212 RNA-binding protein hn 99.7 2E-16 4.3E-21 132.8 17.5 169 6-174 44-283 (608)
49 KOG4211 Splicing factor hnRNP- 99.7 1.1E-16 2.4E-21 136.5 16.0 165 6-186 10-179 (510)
50 PLN03120 nucleic acid binding 99.7 2.5E-17 5.4E-22 132.3 11.3 78 6-84 4-81 (260)
51 KOG1190 Polypyrimidine tract-b 99.7 2.1E-16 4.6E-21 131.6 16.8 177 6-187 297-489 (492)
52 TIGR01648 hnRNP-R-Q heterogene 99.7 3.1E-17 6.8E-22 147.9 11.9 126 5-136 232-368 (578)
53 KOG0126 Predicted RNA-binding 99.7 1.3E-18 2.7E-23 129.5 0.8 83 4-86 33-118 (219)
54 KOG0110 RNA-binding protein (R 99.7 3.9E-16 8.6E-21 138.4 14.8 173 4-179 383-592 (725)
55 KOG0114 Predicted RNA-binding 99.7 6.9E-17 1.5E-21 109.0 7.5 81 5-85 17-97 (124)
56 PLN03121 nucleic acid binding 99.7 2.5E-16 5.4E-21 124.5 10.4 79 5-84 4-82 (243)
57 KOG0120 Splicing factor U2AF, 99.7 2.7E-16 5.9E-21 137.4 11.4 173 5-177 288-484 (500)
58 COG0724 RNA-binding proteins ( 99.7 1.6E-15 3.5E-20 128.2 14.7 141 6-146 115-262 (306)
59 KOG0122 Translation initiation 99.7 4.7E-16 1E-20 121.3 9.3 80 4-83 187-269 (270)
60 TIGR01659 sex-lethal sex-letha 99.7 6.9E-16 1.5E-20 132.5 10.8 81 5-85 192-277 (346)
61 PF14259 RRM_6: RNA recognitio 99.7 4.6E-16 1E-20 103.0 7.6 68 9-76 1-70 (70)
62 KOG0130 RNA-binding protein RB 99.6 5E-16 1.1E-20 110.0 6.5 77 7-83 73-152 (170)
63 PLN03213 repressor of silencin 99.6 1.4E-15 3.1E-20 129.6 9.8 78 4-82 8-87 (759)
64 KOG0124 Polypyrimidine tract-b 99.6 2.3E-14 5E-19 118.0 16.4 78 6-83 210-290 (544)
65 KOG0125 Ataxin 2-binding prote 99.6 1.7E-15 3.7E-20 122.9 7.9 80 4-83 94-174 (376)
66 smart00362 RRM_2 RNA recogniti 99.6 5.9E-15 1.3E-19 97.8 9.2 71 8-78 1-72 (72)
67 KOG1456 Heterogeneous nuclear 99.6 8.2E-14 1.8E-18 115.0 16.5 179 4-184 285-484 (494)
68 KOG0149 Predicted RNA-binding 99.6 8.5E-15 1.9E-19 113.9 10.0 76 6-82 12-90 (247)
69 PLN03134 glycine-rich RNA-bind 99.6 1.5E-13 3.3E-18 103.4 14.1 80 106-189 31-114 (144)
70 KOG1190 Polypyrimidine tract-b 99.6 2.3E-13 4.9E-18 113.7 16.1 177 7-189 151-373 (492)
71 KOG0113 U1 small nuclear ribon 99.6 6.3E-13 1.4E-17 106.8 17.4 80 104-187 96-179 (335)
72 cd00590 RRM RRM (RNA recogniti 99.5 7.2E-14 1.6E-18 93.0 9.4 72 8-79 1-74 (74)
73 PF13893 RRM_5: RNA recognitio 99.5 5.2E-14 1.1E-18 88.6 7.8 56 23-80 1-56 (56)
74 KOG0111 Cyclophilin-type pepti 99.5 1.2E-14 2.6E-19 111.7 5.7 84 4-87 8-94 (298)
75 KOG0415 Predicted peptidyl pro 99.5 1.8E-14 3.9E-19 118.1 6.7 85 4-88 237-324 (479)
76 smart00360 RRM RNA recognition 99.5 7.3E-14 1.6E-18 92.1 8.1 68 11-78 1-71 (71)
77 KOG1456 Heterogeneous nuclear 99.5 4E-12 8.6E-17 105.2 19.5 176 4-186 118-360 (494)
78 KOG0108 mRNA cleavage and poly 99.5 6E-14 1.3E-18 122.2 9.3 79 7-85 19-100 (435)
79 KOG0117 Heterogeneous nuclear 99.5 4.7E-14 1E-18 119.1 7.6 78 6-88 259-336 (506)
80 KOG0109 RNA-binding protein LA 99.5 7.4E-14 1.6E-18 111.7 6.6 76 4-84 76-151 (346)
81 KOG0130 RNA-binding protein RB 99.4 4.2E-13 9.2E-18 95.3 7.9 77 106-186 69-149 (170)
82 PF00076 RRM_1: RNA recognitio 99.4 1.7E-12 3.6E-17 85.7 9.8 63 112-174 1-66 (70)
83 KOG4212 RNA-binding protein hn 99.4 1.2E-11 2.7E-16 104.4 16.8 75 5-79 214-290 (608)
84 KOG0129 Predicted RNA-binding 99.4 5.9E-12 1.3E-16 108.7 14.5 167 5-174 258-444 (520)
85 smart00361 RRM_1 RNA recogniti 99.4 1.8E-12 3.8E-17 85.4 7.5 58 20-77 2-69 (70)
86 KOG0125 Ataxin 2-binding prote 99.4 2.6E-12 5.6E-17 104.7 9.1 81 104-188 91-173 (376)
87 KOG4454 RNA binding protein (R 99.4 1.5E-13 3.2E-18 105.7 1.6 139 4-172 7-150 (267)
88 KOG1365 RNA-binding protein Fu 99.3 3.9E-12 8.5E-17 105.6 8.9 173 8-185 163-358 (508)
89 KOG0132 RNA polymerase II C-te 99.3 3E-12 6.6E-17 115.0 8.9 77 6-85 421-497 (894)
90 PLN03120 nucleic acid binding 99.3 1.1E-11 2.5E-16 99.9 11.1 76 109-189 4-80 (260)
91 KOG0112 Large RNA-binding prot 99.3 1.2E-12 2.7E-17 119.3 4.6 158 4-187 370-529 (975)
92 KOG0105 Alternative splicing f 99.3 2.4E-11 5.2E-16 91.2 9.7 79 108-190 5-84 (241)
93 KOG0121 Nuclear cap-binding pr 99.3 1.3E-11 2.8E-16 87.0 7.4 80 106-189 33-116 (153)
94 KOG0120 Splicing factor U2AF, 99.3 1.6E-11 3.4E-16 107.8 9.7 170 4-177 173-361 (500)
95 KOG0146 RNA-binding protein ET 99.3 4.7E-12 1E-16 100.3 5.7 83 3-85 282-367 (371)
96 PF14259 RRM_6: RNA recognitio 99.3 2.9E-11 6.4E-16 79.8 8.5 63 112-174 1-66 (70)
97 KOG0122 Translation initiation 99.3 5E-11 1.1E-15 93.5 10.4 81 105-189 185-269 (270)
98 PLN03213 repressor of silencin 99.3 3.7E-11 8.1E-16 103.0 10.1 78 107-188 8-87 (759)
99 KOG0114 Predicted RNA-binding 99.2 6.5E-11 1.4E-15 80.3 8.5 78 105-186 14-92 (124)
100 PLN03121 nucleic acid binding 99.2 1.1E-10 2.3E-15 92.8 10.5 75 108-187 4-79 (243)
101 KOG0131 Splicing factor 3b, su 99.2 2.7E-11 5.8E-16 90.9 6.5 79 105-187 5-87 (203)
102 smart00362 RRM_2 RNA recogniti 99.2 2E-10 4.3E-15 75.7 9.8 64 111-174 1-66 (72)
103 KOG4208 Nucleolar RNA-binding 99.2 5E-11 1.1E-15 91.3 7.3 79 5-83 48-130 (214)
104 KOG0153 Predicted RNA-binding 99.1 1.4E-10 3E-15 95.5 8.0 76 4-82 226-302 (377)
105 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.3E-10 5E-15 99.8 7.6 80 6-85 405-487 (940)
106 KOG4660 Protein Mei2, essentia 99.1 4.6E-11 1E-15 104.1 3.3 163 4-174 73-239 (549)
107 KOG0533 RRM motif-containing p 99.1 4.3E-10 9.3E-15 90.5 8.4 82 5-86 82-165 (243)
108 cd00590 RRM RRM (RNA recogniti 99.1 1.9E-09 4.2E-14 71.3 10.3 64 111-174 1-67 (74)
109 KOG0126 Predicted RNA-binding 99.1 1.4E-11 3E-16 92.3 -0.3 77 108-188 34-114 (219)
110 smart00360 RRM RNA recognition 99.1 1E-09 2.2E-14 71.9 8.7 61 114-174 1-65 (71)
111 KOG0415 Predicted peptidyl pro 99.1 2.1E-10 4.4E-15 94.6 6.1 79 105-187 235-317 (479)
112 KOG2193 IGF-II mRNA-binding pr 99.1 1.4E-11 3E-16 103.6 -0.7 141 7-174 2-146 (584)
113 PF13893 RRM_5: RNA recognitio 99.1 1.3E-09 2.9E-14 68.3 8.1 55 126-185 1-55 (56)
114 KOG0111 Cyclophilin-type pepti 99.0 2.6E-10 5.7E-15 88.0 4.5 81 106-190 7-91 (298)
115 KOG4205 RNA-binding protein mu 99.0 4E-10 8.6E-15 94.4 5.9 83 5-88 96-181 (311)
116 KOG0151 Predicted splicing reg 99.0 6.1E-10 1.3E-14 99.5 7.0 80 4-83 172-257 (877)
117 KOG4211 Splicing factor hnRNP- 98.9 2.4E-08 5.3E-13 86.1 13.8 167 5-174 102-347 (510)
118 KOG0128 RNA-binding protein SA 98.9 7.2E-11 1.6E-15 107.5 -2.2 133 5-174 666-804 (881)
119 KOG4209 Splicing factor RNPS1, 98.9 1.7E-09 3.7E-14 87.3 5.9 79 4-83 99-180 (231)
120 KOG0116 RasGAP SH3 binding pro 98.9 3.8E-09 8.3E-14 91.9 7.1 76 6-82 288-366 (419)
121 KOG0149 Predicted RNA-binding 98.9 5.1E-09 1.1E-13 82.1 6.9 66 108-174 11-80 (247)
122 PF11608 Limkain-b1: Limkain b 98.9 1.3E-08 2.8E-13 66.8 7.5 71 7-84 3-78 (90)
123 KOG4210 Nuclear localization s 98.8 5E-09 1.1E-13 87.5 6.0 171 5-191 87-266 (285)
124 KOG0108 mRNA cleavage and poly 98.8 1E-08 2.2E-13 89.8 7.4 78 110-191 19-100 (435)
125 COG0724 RNA-binding proteins ( 98.8 3.6E-08 7.7E-13 83.1 10.2 75 109-187 115-193 (306)
126 PF04059 RRM_2: RNA recognitio 98.8 4.4E-08 9.6E-13 67.6 8.4 75 7-81 2-85 (97)
127 smart00361 RRM_1 RNA recogniti 98.8 5.3E-08 1.1E-12 64.0 8.3 52 123-174 2-64 (70)
128 KOG4676 Splicing factor, argin 98.7 3.8E-09 8.3E-14 88.3 1.6 63 7-71 152-214 (479)
129 KOG1457 RNA binding protein (c 98.7 1.7E-08 3.8E-13 78.3 3.9 67 3-70 207-273 (284)
130 KOG0226 RNA-binding proteins [ 98.6 6.1E-08 1.3E-12 76.8 4.4 77 5-81 189-268 (290)
131 KOG0106 Alternative splicing f 98.5 6.2E-08 1.3E-12 76.4 3.3 69 4-77 97-165 (216)
132 KOG4307 RNA binding protein RB 98.5 4.9E-07 1.1E-11 81.2 9.2 174 5-184 310-509 (944)
133 KOG4206 Spliceosomal protein s 98.5 5.9E-07 1.3E-11 70.4 8.4 78 107-188 7-89 (221)
134 KOG4661 Hsp27-ERE-TATA-binding 98.5 4.2E-07 9.1E-12 79.9 7.7 77 108-188 404-484 (940)
135 KOG1365 RNA-binding protein Fu 98.5 2.8E-06 6.1E-11 71.4 12.1 158 4-166 58-225 (508)
136 PF08777 RRM_3: RNA binding mo 98.5 4.3E-07 9.4E-12 64.3 5.9 70 7-79 2-76 (105)
137 KOG0533 RRM motif-containing p 98.4 1.1E-06 2.4E-11 71.0 8.2 71 107-177 81-154 (243)
138 KOG0132 RNA polymerase II C-te 98.4 9.7E-07 2.1E-11 80.4 8.4 76 108-189 420-495 (894)
139 KOG0226 RNA-binding proteins [ 98.4 3.9E-07 8.4E-12 72.4 4.8 153 8-174 98-259 (290)
140 KOG0153 Predicted RNA-binding 98.4 1.6E-06 3.4E-11 72.0 8.5 77 106-188 225-302 (377)
141 KOG1995 Conserved Zn-finger pr 98.4 2.9E-07 6.2E-12 76.8 4.3 81 4-84 64-155 (351)
142 KOG1548 Transcription elongati 98.3 2.7E-06 5.9E-11 70.6 8.5 80 105-188 130-220 (382)
143 KOG4208 Nucleolar RNA-binding 98.3 3.8E-06 8.2E-11 64.9 8.2 76 106-181 46-126 (214)
144 KOG2202 U2 snRNP splicing fact 98.3 2.6E-07 5.6E-12 73.6 1.9 62 21-82 83-147 (260)
145 KOG3152 TBP-binding protein, a 98.3 3.7E-07 8.1E-12 72.6 2.7 70 5-74 73-157 (278)
146 COG5175 MOT2 Transcriptional r 98.3 1.8E-06 4E-11 71.3 6.5 76 6-81 114-201 (480)
147 KOG4454 RNA binding protein (R 98.2 5E-07 1.1E-11 70.2 2.1 77 105-181 5-83 (267)
148 PF14605 Nup35_RRM_2: Nup53/35 98.2 3.3E-06 7.1E-11 51.7 5.2 53 6-62 1-53 (53)
149 KOG0116 RasGAP SH3 binding pro 98.2 1.6E-05 3.6E-10 69.6 10.6 77 108-189 287-367 (419)
150 PF05172 Nup35_RRM: Nup53/35/4 98.2 9.4E-06 2E-10 56.5 7.2 76 4-81 4-90 (100)
151 KOG0151 Predicted splicing reg 98.1 9.6E-06 2.1E-10 73.4 8.3 82 101-186 166-254 (877)
152 PF11608 Limkain-b1: Limkain b 98.1 3.1E-05 6.7E-10 51.1 8.0 69 110-188 3-76 (90)
153 KOG2416 Acinus (induces apopto 98.1 2.6E-06 5.6E-11 75.5 3.8 76 4-82 442-521 (718)
154 KOG4210 Nuclear localization s 98.1 2.9E-06 6.2E-11 71.1 3.6 81 4-85 182-266 (285)
155 KOG4307 RNA binding protein RB 98.1 1.1E-05 2.5E-10 72.7 7.4 73 7-79 868-943 (944)
156 PF04059 RRM_2: RNA recognitio 98.1 5.6E-05 1.2E-09 52.3 9.2 65 110-174 2-72 (97)
157 KOG2314 Translation initiation 98.0 1.7E-05 3.8E-10 70.0 7.6 76 6-82 58-143 (698)
158 PF08777 RRM_3: RNA binding mo 98.0 1.3E-05 2.9E-10 56.7 5.7 60 109-170 1-60 (105)
159 KOG4660 Protein Mei2, essentia 98.0 1.3E-05 2.8E-10 70.7 5.4 69 106-175 72-140 (549)
160 KOG1855 Predicted RNA-binding 97.9 7.2E-06 1.6E-10 70.0 3.5 76 3-78 228-319 (484)
161 PF08952 DUF1866: Domain of un 97.9 6.5E-05 1.4E-09 55.5 7.5 55 22-82 52-106 (146)
162 KOG4849 mRNA cleavage factor I 97.9 1.1E-05 2.4E-10 67.0 3.8 76 6-81 80-160 (498)
163 KOG0129 Predicted RNA-binding 97.8 8.1E-05 1.8E-09 65.3 7.6 60 4-63 368-431 (520)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.8E-09 44.6 5.4 52 110-164 2-53 (53)
165 KOG1996 mRNA splicing factor [ 97.7 0.00011 2.3E-09 59.9 6.3 62 20-81 300-365 (378)
166 KOG0115 RNA-binding protein p5 97.6 0.00016 3.4E-09 58.0 6.2 103 57-186 6-111 (275)
167 KOG4209 Splicing factor RNPS1, 97.6 9.2E-05 2E-09 60.1 5.0 76 106-186 98-177 (231)
168 KOG0112 Large RNA-binding prot 97.6 0.00013 2.7E-09 68.1 5.6 81 4-87 453-535 (975)
169 PF08675 RNA_bind: RNA binding 97.5 0.00065 1.4E-08 44.9 6.8 55 7-67 10-64 (87)
170 PF15023 DUF4523: Protein of u 97.5 0.001 2.2E-08 48.6 8.0 74 3-81 83-160 (166)
171 PF07576 BRAP2: BRCA1-associat 97.4 0.0018 3.9E-08 46.1 8.4 68 4-71 11-80 (110)
172 KOG1995 Conserved Zn-finger pr 97.4 0.00036 7.9E-09 58.7 5.5 70 106-175 63-144 (351)
173 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0017 3.7E-08 45.3 7.5 68 108-177 5-83 (100)
174 KOG3152 TBP-binding protein, a 97.3 0.0002 4.3E-09 57.4 2.7 68 108-175 73-156 (278)
175 KOG1855 Predicted RNA-binding 97.2 0.00057 1.2E-08 58.7 5.4 67 104-170 226-309 (484)
176 KOG0128 RNA-binding protein SA 97.2 0.00038 8.3E-09 64.7 4.2 81 6-86 736-818 (881)
177 KOG2314 Translation initiation 97.2 0.0019 4.2E-08 57.5 7.9 68 107-174 56-132 (698)
178 KOG2202 U2 snRNP splicing fact 97.1 0.00077 1.7E-08 54.2 4.9 53 125-177 84-140 (260)
179 KOG1996 mRNA splicing factor [ 97.1 0.0023 5.1E-08 52.4 7.0 54 123-176 300-358 (378)
180 COG5175 MOT2 Transcriptional r 97.0 0.0023 5E-08 53.4 6.8 75 103-177 108-195 (480)
181 PF03880 DbpA: DbpA RNA bindin 96.8 0.0092 2E-07 39.3 7.1 67 8-80 2-74 (74)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0017 3.7E-08 50.6 4.1 81 3-83 4-98 (176)
183 KOG2591 c-Mpl binding protein, 96.7 0.0023 5E-08 56.9 4.5 72 4-79 173-248 (684)
184 PF04847 Calcipressin: Calcipr 96.6 0.0096 2.1E-07 46.6 7.2 64 18-84 7-72 (184)
185 PF10309 DUF2414: Protein of u 96.5 0.023 5.1E-07 35.6 6.8 54 7-65 6-62 (62)
186 KOG2253 U1 snRNP complex, subu 96.5 0.0015 3.3E-08 59.3 2.1 70 5-80 39-108 (668)
187 KOG4285 Mitotic phosphoprotein 96.5 0.012 2.6E-07 48.6 6.9 72 6-82 197-269 (350)
188 KOG2135 Proteins containing th 96.4 0.0021 4.5E-08 56.1 2.5 77 4-84 370-447 (526)
189 KOG0804 Cytoplasmic Zn-finger 96.4 0.01 2.2E-07 51.7 6.6 68 5-72 73-142 (493)
190 KOG2068 MOT2 transcription fac 96.3 0.0014 3E-08 55.0 0.8 75 7-81 78-161 (327)
191 KOG2591 c-Mpl binding protein, 96.3 0.027 5.7E-07 50.5 8.5 85 54-167 146-232 (684)
192 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.18 3.9E-06 41.8 12.3 165 5-170 14-214 (309)
193 PF08675 RNA_bind: RNA binding 96.2 0.028 6.1E-07 37.3 6.1 56 109-169 9-64 (87)
194 PF08952 DUF1866: Domain of un 96.1 0.051 1.1E-06 40.4 8.0 50 124-178 51-100 (146)
195 PF10309 DUF2414: Protein of u 96.1 0.065 1.4E-06 33.7 7.2 54 110-167 6-62 (62)
196 KOG0115 RNA-binding protein p5 96.0 0.0086 1.9E-07 48.3 3.6 75 7-81 32-112 (275)
197 KOG4574 RNA-binding protein (c 95.6 0.0098 2.1E-07 55.7 3.2 75 10-87 302-378 (1007)
198 KOG2416 Acinus (induces apopto 95.6 0.0087 1.9E-07 53.8 2.8 66 106-173 441-507 (718)
199 PF07292 NID: Nmi/IFP 35 domai 95.5 0.029 6.2E-07 38.0 4.4 81 48-147 1-83 (88)
200 KOG2318 Uncharacterized conser 95.4 0.087 1.9E-06 47.5 8.1 80 4-83 172-308 (650)
201 PF11767 SET_assoc: Histone ly 94.9 0.15 3.2E-06 32.6 6.0 55 17-77 11-65 (66)
202 KOG2135 Proteins containing th 94.9 0.052 1.1E-06 47.7 5.1 72 110-188 373-445 (526)
203 KOG4285 Mitotic phosphoprotein 94.6 0.21 4.6E-06 41.5 7.7 63 109-175 197-259 (350)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.079 1.7E-06 41.4 4.7 81 107-187 5-96 (176)
205 PF07576 BRAP2: BRCA1-associat 94.1 0.78 1.7E-05 32.7 8.8 64 111-174 15-81 (110)
206 PF14111 DUF4283: Domain of un 94.0 0.069 1.5E-06 40.6 3.6 121 8-145 17-141 (153)
207 KOG2193 IGF-II mRNA-binding pr 93.9 0.0022 4.8E-08 55.1 -5.1 77 6-82 80-156 (584)
208 PF15023 DUF4523: Protein of u 92.6 0.8 1.7E-05 33.9 6.9 63 106-171 83-149 (166)
209 KOG0804 Cytoplasmic Zn-finger 92.4 0.72 1.6E-05 40.7 7.6 66 109-174 74-142 (493)
210 KOG0835 Cyclin L [General func 92.2 0.33 7.2E-06 40.9 5.2 19 45-63 173-191 (367)
211 KOG1847 mRNA splicing factor [ 92.0 0.11 2.4E-06 47.5 2.4 7 227-233 750-756 (878)
212 PF03880 DbpA: DbpA RNA bindin 91.7 1.4 3E-05 28.9 6.9 58 118-184 10-72 (74)
213 KOG4849 mRNA cleavage factor I 91.3 0.23 5E-06 42.1 3.4 67 108-174 79-151 (498)
214 KOG2891 Surface glycoprotein [ 91.1 0.14 3.1E-06 41.9 1.9 79 109-187 149-266 (445)
215 KOG4019 Calcineurin-mediated s 90.8 0.26 5.7E-06 37.8 3.0 77 7-86 11-93 (193)
216 KOG2253 U1 snRNP complex, subu 90.2 0.48 1E-05 43.7 4.7 68 104-176 35-102 (668)
217 KOG2146 Splicing coactivator S 90.1 6 0.00013 32.9 10.3 32 48-79 55-87 (354)
218 KOG2068 MOT2 transcription fac 89.7 0.19 4.2E-06 42.5 1.7 71 106-176 74-154 (327)
219 KOG0835 Cyclin L [General func 89.4 0.77 1.7E-05 38.9 4.9 8 122-129 214-221 (367)
220 PRK14548 50S ribosomal protein 88.7 2.2 4.9E-05 28.7 5.9 58 8-65 22-81 (84)
221 KOG4483 Uncharacterized conser 88.5 0.75 1.6E-05 39.8 4.3 55 6-63 391-445 (528)
222 KOG2891 Surface glycoprotein [ 87.9 0.18 3.9E-06 41.3 0.4 65 6-70 149-247 (445)
223 TIGR03636 L23_arch archaeal ri 87.7 3.1 6.7E-05 27.5 6.0 56 8-63 15-72 (77)
224 PF03468 XS: XS domain; Inter 87.4 0.51 1.1E-05 34.0 2.4 56 8-63 10-75 (116)
225 PF04847 Calcipressin: Calcipr 87.2 2.8 6E-05 33.0 6.6 53 122-176 8-62 (184)
226 KOG4574 RNA-binding protein (c 86.5 0.39 8.5E-06 45.5 1.7 55 118-174 307-361 (1007)
227 KOG2888 Putative RNA binding p 86.3 0.51 1.1E-05 39.8 2.1 8 125-132 228-235 (453)
228 KOG2888 Putative RNA binding p 84.4 0.47 1E-05 40.0 1.1 12 122-133 170-181 (453)
229 KOG2295 C2H2 Zn-finger protein 82.1 0.19 4E-06 45.3 -2.2 68 5-72 230-300 (648)
230 PF14893 PNMA: PNMA 81.5 1.8 4E-05 37.3 3.6 57 1-57 13-74 (331)
231 COG5638 Uncharacterized conser 81.1 6.8 0.00015 34.3 6.8 79 3-81 143-296 (622)
232 KOG4410 5-formyltetrahydrofola 80.2 5.9 0.00013 32.9 5.8 58 6-66 330-395 (396)
233 KOG1295 Nonsense-mediated deca 79.7 2.3 5E-05 36.8 3.6 66 5-70 6-77 (376)
234 PTZ00191 60S ribosomal protein 75.5 12 0.00026 28.0 5.9 54 9-62 84-139 (145)
235 PF15513 DUF4651: Domain of un 74.3 8.3 0.00018 24.2 4.0 19 20-38 8-26 (62)
236 KOG3580 Tight junction protein 74.0 77 0.0017 29.8 11.5 39 107-145 59-98 (1027)
237 KOG4410 5-formyltetrahydrofola 70.5 23 0.0005 29.6 6.9 50 108-158 329-378 (396)
238 PF09707 Cas_Cas2CT1978: CRISP 70.4 11 0.00024 25.5 4.3 49 6-54 25-73 (86)
239 PF11767 SET_assoc: Histone ly 67.8 29 0.00063 22.2 6.5 50 120-174 11-60 (66)
240 cd04908 ACT_Bt0572_1 N-termina 67.1 28 0.00061 21.8 6.5 44 19-63 14-58 (66)
241 PRK10629 EnvZ/OmpR regulon mod 65.8 51 0.0011 24.2 8.1 71 6-81 35-109 (127)
242 smart00596 PRE_C2HC PRE_C2HC d 65.0 16 0.00035 23.5 4.0 58 21-81 2-63 (69)
243 cd04889 ACT_PDH-BS-like C-term 62.4 31 0.00068 20.6 5.6 44 19-62 11-55 (56)
244 PF07530 PRE_C2HC: Associated 61.7 33 0.00072 22.0 5.1 59 21-82 2-64 (68)
245 PF07292 NID: Nmi/IFP 35 domai 61.2 4.6 9.9E-05 27.5 1.1 24 4-27 50-73 (88)
246 KOG1295 Nonsense-mediated deca 60.3 11 0.00024 32.8 3.5 67 108-174 6-79 (376)
247 PRK14548 50S ribosomal protein 60.0 50 0.0011 22.2 6.6 55 113-167 24-81 (84)
248 KOG4483 Uncharacterized conser 60.0 26 0.00057 30.8 5.6 56 108-166 390-446 (528)
249 KOG4008 rRNA processing protei 59.5 8.1 0.00018 31.3 2.4 35 4-38 38-72 (261)
250 PF11411 DNA_ligase_IV: DNA li 59.0 8.2 0.00018 21.2 1.6 17 16-32 19-35 (36)
251 COG0018 ArgS Arginyl-tRNA synt 57.4 74 0.0016 30.1 8.6 100 19-146 59-167 (577)
252 COG0030 KsgA Dimethyladenosine 57.0 16 0.00036 30.4 3.9 44 7-63 96-139 (259)
253 KOG4213 RNA-binding protein La 56.9 15 0.00033 28.4 3.3 46 18-63 118-168 (205)
254 PF03439 Spt5-NGN: Early trans 55.3 33 0.00071 23.0 4.5 35 32-68 33-67 (84)
255 PRK11558 putative ssRNA endonu 53.4 27 0.00059 24.2 3.8 49 6-55 27-76 (97)
256 CHL00123 rps6 ribosomal protei 52.9 50 0.0011 22.8 5.2 50 14-63 14-80 (97)
257 TIGR03636 L23_arch archaeal ri 51.5 69 0.0015 21.2 6.6 56 112-167 16-74 (77)
258 KOG4019 Calcineurin-mediated s 51.4 15 0.00032 28.6 2.5 64 110-175 11-79 (193)
259 KOG2318 Uncharacterized conser 49.4 1.4E+02 0.003 28.0 8.5 69 107-175 172-296 (650)
260 KOG2187 tRNA uracil-5-methyltr 49.1 61 0.0013 29.9 6.3 43 44-86 62-104 (534)
261 PF08544 GHMP_kinases_C: GHMP 48.2 76 0.0016 20.7 6.2 44 21-66 37-80 (85)
262 PF02829 3H: 3H domain; Inter 45.7 49 0.0011 23.0 4.2 51 17-67 8-58 (98)
263 PRK05738 rplW 50S ribosomal pr 44.8 62 0.0013 22.2 4.6 32 8-39 21-54 (92)
264 KOG4365 Uncharacterized conser 43.6 4.3 9.3E-05 35.9 -1.5 74 7-81 4-80 (572)
265 PF11823 DUF3343: Protein of u 43.5 30 0.00066 22.3 2.8 27 46-72 2-28 (73)
266 PF14111 DUF4283: Domain of un 43.4 32 0.00069 25.7 3.4 33 9-41 107-140 (153)
267 PF09902 DUF2129: Uncharacteri 43.4 62 0.0013 21.0 4.1 38 26-69 16-53 (71)
268 PF02714 DUF221: Domain of unk 43.2 59 0.0013 28.0 5.4 35 48-84 1-35 (325)
269 COG0150 PurM Phosphoribosylami 42.7 9.3 0.0002 32.9 0.3 50 18-68 273-322 (345)
270 PF08544 GHMP_kinases_C: GHMP 42.4 95 0.0021 20.2 6.5 45 123-168 36-80 (85)
271 PF10567 Nab6_mRNP_bdg: RNA-re 42.2 84 0.0018 26.6 5.7 55 108-162 14-79 (309)
272 PF14026 DUF4242: Protein of u 41.9 1E+02 0.0022 20.3 7.8 62 8-70 2-71 (77)
273 KOG0156 Cytochrome P450 CYP2 s 41.8 54 0.0012 30.3 5.1 59 10-75 36-97 (489)
274 PRK11634 ATP-dependent RNA hel 41.2 73 0.0016 30.5 6.0 60 16-81 497-561 (629)
275 PF00398 RrnaAD: Ribosomal RNA 40.8 22 0.00048 29.6 2.3 44 6-63 97-142 (262)
276 PF05189 RTC_insert: RNA 3'-te 40.8 42 0.0009 23.4 3.4 47 8-54 12-66 (103)
277 TIGR01873 cas_CT1978 CRISPR-as 40.7 57 0.0012 22.1 3.8 48 6-54 25-74 (87)
278 cd00187 TOP4c DNA Topoisomeras 39.9 1.6E+02 0.0034 26.9 7.6 57 7-63 226-287 (445)
279 KOG4246 Predicted DNA-binding 39.7 11 0.00024 36.2 0.4 16 44-59 58-73 (1194)
280 COG3254 Uncharacterized conser 39.2 1.4E+02 0.0029 21.1 5.5 40 22-62 28-68 (105)
281 PTZ00191 60S ribosomal protein 38.9 1.7E+02 0.0036 22.1 6.6 55 111-165 83-140 (145)
282 KOG2854 Possible pfkB family c 38.6 2E+02 0.0043 25.0 7.5 49 4-53 79-127 (343)
283 COG5353 Uncharacterized protei 38.6 1.6E+02 0.0034 22.3 6.0 53 5-57 86-154 (161)
284 PRK00911 dihydroxy-acid dehydr 38.2 1.3E+02 0.0028 28.3 6.8 37 45-84 398-434 (552)
285 cd04879 ACT_3PGDH-like ACT_3PG 38.2 94 0.002 18.9 5.3 47 9-55 2-50 (71)
286 PRK08559 nusG transcription an 36.9 1.6E+02 0.0034 22.4 6.2 33 33-67 36-68 (153)
287 PF08442 ATP-grasp_2: ATP-gras 36.4 79 0.0017 25.3 4.7 53 18-71 25-81 (202)
288 cd06405 PB1_Mekk2_3 The PB1 do 36.0 1.3E+02 0.0027 19.8 7.5 61 13-79 15-76 (79)
289 PTZ00338 dimethyladenosine tra 35.4 43 0.00093 28.6 3.2 47 8-68 103-149 (294)
290 PF00276 Ribosomal_L23: Riboso 34.7 1.1E+02 0.0024 20.9 4.6 50 8-57 21-85 (91)
291 PF01071 GARS_A: Phosphoribosy 34.5 1.2E+02 0.0025 24.2 5.3 61 18-79 24-87 (194)
292 PF00403 HMA: Heavy-metal-asso 33.8 1.1E+02 0.0024 18.5 6.4 54 111-166 1-58 (62)
293 TIGR00110 ilvD dihydroxy-acid 33.4 1.5E+02 0.0032 27.7 6.5 36 45-83 383-418 (535)
294 PF12829 Mhr1: Transcriptional 33.3 1.1E+02 0.0024 20.9 4.3 52 117-168 20-72 (91)
295 CHL00030 rpl23 ribosomal prote 32.9 1.6E+02 0.0034 20.3 5.1 32 8-39 20-53 (93)
296 TIGR00755 ksgA dimethyladenosi 32.8 52 0.0011 27.2 3.3 24 8-31 96-119 (253)
297 PRK02886 hypothetical protein; 32.3 1.1E+02 0.0023 20.8 4.0 38 26-69 20-57 (87)
298 PF13689 DUF4154: Domain of un 31.8 2.2E+02 0.0047 21.2 7.3 37 44-81 25-61 (145)
299 COG5470 Uncharacterized conser 31.7 1.1E+02 0.0025 21.0 4.1 21 43-63 51-71 (96)
300 KOG3702 Nuclear polyadenylated 31.5 29 0.00062 32.7 1.6 71 8-79 513-586 (681)
301 COG5193 LHP1 La protein, small 31.5 25 0.00053 31.0 1.1 57 7-63 175-244 (438)
302 PRK02302 hypothetical protein; 31.3 1.1E+02 0.0025 20.8 4.1 38 26-69 22-59 (89)
303 PF09702 Cas_Csa5: CRISPR-asso 31.3 66 0.0014 22.5 2.9 23 3-28 61-83 (105)
304 cd04883 ACT_AcuB C-terminal AC 31.2 1.4E+02 0.0029 18.7 6.3 45 19-63 14-62 (72)
305 COG3254 Uncharacterized conser 31.1 1.9E+02 0.0041 20.4 5.4 40 124-164 27-68 (105)
306 PF08734 GYD: GYD domain; Int 31.0 1.7E+02 0.0038 19.8 6.5 46 123-168 22-68 (91)
307 smart00650 rADc Ribosomal RNA 30.9 72 0.0016 24.4 3.7 23 7-29 78-100 (169)
308 COG0045 SucC Succinyl-CoA synt 30.9 2.4E+02 0.0052 25.1 7.0 64 18-81 26-96 (387)
309 PRK00274 ksgA 16S ribosomal RN 30.8 60 0.0013 27.2 3.4 22 8-29 107-128 (272)
310 cd04882 ACT_Bt0572_2 C-termina 30.6 1.3E+02 0.0028 18.2 5.3 44 20-63 13-58 (65)
311 PRK11230 glycolate oxidase sub 30.5 1.3E+02 0.0029 27.9 5.8 59 8-66 191-255 (499)
312 COG5507 Uncharacterized conser 30.3 49 0.0011 22.8 2.2 21 45-65 66-86 (117)
313 PF01782 RimM: RimM N-terminal 30.2 95 0.0021 20.5 3.7 24 45-69 54-77 (84)
314 PF09869 DUF2096: Uncharacteri 30.2 1.7E+02 0.0036 22.6 5.2 47 13-66 118-164 (169)
315 cd04909 ACT_PDH-BS C-terminal 29.7 1.4E+02 0.0031 18.5 5.5 47 19-65 14-62 (69)
316 COG0090 RplB Ribosomal protein 29.7 58 0.0013 27.1 2.9 33 105-137 123-155 (275)
317 PF15407 Spo7_2_N: Sporulation 29.6 19 0.00042 23.0 0.2 24 4-27 25-48 (67)
318 PF05036 SPOR: Sporulation rel 29.6 95 0.0021 19.5 3.6 60 109-168 4-65 (76)
319 PRK12758 DNA topoisomerase IV 28.8 5.3E+02 0.012 25.9 9.5 60 5-65 240-303 (869)
320 PF13820 Nucleic_acid_bd: Puta 28.2 87 0.0019 23.7 3.4 59 8-67 6-67 (149)
321 PTZ00380 microtubule-associate 27.8 1.1E+02 0.0024 22.2 3.7 13 45-57 97-109 (121)
322 smart00195 DSPc Dual specifici 27.8 2E+02 0.0044 20.8 5.5 29 8-38 7-35 (138)
323 PF06014 DUF910: Bacterial pro 27.3 41 0.00089 21.1 1.3 18 19-36 3-20 (62)
324 COG5584 Predicted small secret 26.9 57 0.0012 22.4 2.0 27 13-39 29-55 (103)
325 PRK09631 DNA topoisomerase IV 26.8 5.9E+02 0.013 24.6 10.0 59 6-65 220-282 (635)
326 cd04903 ACT_LSD C-terminal ACT 26.7 1.6E+02 0.0034 17.9 7.2 50 18-67 11-64 (71)
327 KOG2295 C2H2 Zn-finger protein 26.6 13 0.00028 34.1 -1.4 68 107-174 229-300 (648)
328 PRK11901 hypothetical protein; 26.5 2.6E+02 0.0057 24.2 6.3 60 107-170 243-307 (327)
329 PF08206 OB_RNB: Ribonuclease 25.6 35 0.00075 21.0 0.8 37 44-81 7-44 (58)
330 PRK09630 DNA topoisomerase IV 25.2 4.9E+02 0.011 24.0 8.0 59 6-65 220-282 (479)
331 TIGR00405 L26e_arch ribosomal 25.1 2.9E+02 0.0063 20.5 6.0 26 42-67 35-60 (145)
332 PF12993 DUF3877: Domain of un 25.1 1.4E+02 0.0031 23.0 4.1 17 16-32 107-123 (175)
333 PF14893 PNMA: PNMA 24.9 59 0.0013 28.3 2.3 27 106-132 15-41 (331)
334 PHA02592 52 DNA topisomerase I 24.9 4.6E+02 0.0099 24.0 8.0 52 6-60 227-282 (439)
335 PF14191 YodL: YodL-like 24.9 2.5E+02 0.0055 19.7 5.1 44 7-50 39-91 (103)
336 PRK06369 nac nascent polypepti 24.6 2.7E+02 0.0059 20.0 6.9 33 119-171 73-105 (115)
337 PRK12448 dihydroxy-acid dehydr 24.3 2.9E+02 0.0064 26.3 6.7 33 50-84 452-484 (615)
338 COG0225 MsrA Peptide methionin 24.1 2.3E+02 0.0049 22.1 5.1 72 8-81 59-136 (174)
339 cd04905 ACT_CM-PDT C-terminal 23.9 2.1E+02 0.0046 18.5 6.0 49 19-67 14-68 (80)
340 PF10281 Ish1: Putative stress 23.7 76 0.0016 17.5 1.9 18 17-34 3-20 (38)
341 COG3227 LasB Zinc metalloprote 23.6 5.9E+02 0.013 23.5 8.3 60 15-83 48-108 (507)
342 COG5227 SMT3 Ubiquitin-like pr 23.3 2.3E+02 0.005 19.3 4.3 64 4-68 32-101 (103)
343 PF15063 TC1: Thyroid cancer p 23.1 54 0.0012 21.4 1.3 24 10-33 29-52 (79)
344 PF07521 RMMBL: RNA-metabolisi 23.1 1.6E+02 0.0034 16.7 3.5 32 7-39 7-38 (43)
345 PRK06131 dihydroxy-acid dehydr 22.9 3.1E+02 0.0068 25.9 6.6 37 45-84 401-439 (571)
346 PF07045 DUF1330: Protein of u 22.7 2E+02 0.0044 17.9 5.2 41 23-63 11-57 (65)
347 PF11910 NdhO: Cyanobacterial 22.7 73 0.0016 20.1 1.8 22 26-54 31-52 (67)
348 PRK07400 30S ribosomal protein 22.5 5.1E+02 0.011 22.4 8.8 37 17-55 12-54 (318)
349 PLN02286 arginine-tRNA ligase 22.3 6.8E+02 0.015 23.8 9.8 51 71-145 115-166 (576)
350 COG0445 GidA Flavin-dependent 22.2 4.4E+02 0.0096 25.0 7.3 95 45-144 236-336 (621)
351 PF08156 NOP5NT: NOP5NT (NUC12 22.1 25 0.00055 22.5 -0.3 38 21-65 27-64 (67)
352 PF03389 MobA_MobL: MobA/MobL 22.0 1.7E+02 0.0037 23.7 4.4 46 10-55 71-124 (216)
353 KOG4357 Uncharacterized conser 21.7 1.8E+02 0.004 21.1 3.9 26 149-174 115-140 (164)
354 PF15585 Imm46: Immunity prote 21.5 86 0.0019 23.0 2.2 45 5-58 50-96 (129)
355 cd04874 ACT_Af1403 N-terminal 21.4 2.1E+02 0.0045 17.4 6.8 48 19-66 13-61 (72)
356 cd00027 BRCT Breast Cancer Sup 21.4 2E+02 0.0042 17.2 5.5 27 7-33 2-28 (72)
357 PF01984 dsDNA_bind: Double-st 21.3 65 0.0014 22.8 1.6 21 12-32 75-95 (107)
358 COG0002 ArgC Acetylglutamate s 21.2 1.9E+02 0.0042 25.3 4.6 43 14-56 253-304 (349)
359 cd01201 Neurobeachin Neurobeac 20.8 3.2E+02 0.007 19.4 5.8 53 12-66 52-106 (108)
360 COG4010 Uncharacterized protei 20.7 3E+02 0.0064 20.7 4.8 47 13-66 118-164 (170)
361 PRK15464 cold shock-like prote 20.6 68 0.0015 20.7 1.4 38 45-83 16-59 (70)
362 TIGR01639 P_fal_TIGR01639 Plas 20.6 44 0.00096 20.9 0.6 23 13-35 5-27 (61)
363 KOG3671 Actin regulatory prote 20.4 1.2E+02 0.0025 27.9 3.3 48 121-169 90-137 (569)
364 PRK05560 DNA gyrase subunit A; 20.3 5.6E+02 0.012 25.6 8.2 58 6-63 251-313 (805)
365 COG0150 PurM Phosphoribosylami 20.0 44 0.00095 29.0 0.6 49 122-170 274-322 (345)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.4e-33 Score=236.31 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=142.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
...++|||+|||+++|+++|+++|+.||+|+.|+|+. ++.+++||||+|.++++|++||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999964 5678999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~ 156 (297)
.+... ....++|||.|||..+++++|+++|.+||.|..+.|+.+..+ +||||+|.+
T Consensus 185 ~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 185 RPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 65321 123468999999999999999999999999999999987543 599999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
.++|++||+.||+..+.+.. ..|.|..+..
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~--~~l~V~~a~~ 274 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGS--QPLTVRLAEE 274 (346)
T ss_pred HHHHHHHHHHhCCCccCCCc--eeEEEEECCc
Confidence 99999999999999987732 3455555443
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.2e-29 Score=186.92 Aligned_cols=183 Identities=62% Similarity=1.067 Sum_probs=159.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
|+.+.+++|||+|||.++.+.+|.+||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 77889999999999999999999999999999999999887777899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEE
Q 022425 81 HGGRRHSSSMDRYSSYSSG--------G-SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGI 151 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~f 151 (297)
......... .+.+.+. + ..++.......|.|.+||+..++++|++.+.+.|.|++..+.++. ++.
T Consensus 81 rggr~s~~~---~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSDR---RGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGV 154 (241)
T ss_pred cCCCccccc---ccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---cee
Confidence 876632221 1212211 1 234556788899999999999999999999999999999999986 789
Q ss_pred EEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 152 VDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 152 v~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
|+|...++++.|+.+|+...+....+..+|.+......
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 99999999999999999999887667888888877655
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=5.4e-30 Score=230.00 Aligned_cols=171 Identities=20% Similarity=0.305 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..++|||+|||+.+++++|+++|..||+|..|.|+. +++++|||||+|.+.++|..||+.|||..|+|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 468999999999999999999999999999999964 57889999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~ 157 (297)
........ ............+|||+||+..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 186 ~~p~a~~~---------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 186 NMPQAQPI---------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccccc---------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 32211000 000111123457899999999999999999999999999999998754 46999999999
Q ss_pred HHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
++|..|+..||+..++| ..|+|.++..
T Consensus 257 e~A~kAI~amNg~elgG----r~LrV~kAi~ 283 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGG----QYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHhCCCeeCC----eEEEEEecCC
Confidence 99999999999999999 7888876654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=8.4e-30 Score=222.62 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+++|+++|+++|+.||+|..|+|+. ++.++|||||+|.++++|++||+.|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999965 56789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEcCH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSY 157 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~ 157 (297)
+... .....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSD--------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred cccc--------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 5432 2234689999999999999999999999999999988764 346999999999
Q ss_pred HHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
++|+.|++.|||..+.|.. ..|.+..+.
T Consensus 142 ~~A~~ai~~l~g~~~~g~~--~~i~v~~a~ 169 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCT--EPITVKFAN 169 (352)
T ss_pred HHHHHHHHHhCCCccCCCc--eeEEEEECC
Confidence 9999999999999998743 345555554
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.5e-29 Score=225.92 Aligned_cols=172 Identities=20% Similarity=0.278 Sum_probs=144.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
+.+.++|||+|||..+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 35688999999999999999999999999999999965 46789999999999999999998 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEc
Q 022425 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (297)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~ 155 (297)
+............. .........+|||+||+..+++++|+++|.+||.|..|.+..+..+ +||||+|.
T Consensus 165 ~~~~~~~~~~~~~~--------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 165 SQAEKNRAAKAATH--------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred cchhhhhhhhcccc--------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 75432221100000 0001123689999999999999999999999999999999987654 69999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
+.++|..|+..|||..|.| ..|.|..+.
T Consensus 237 ~~e~A~~A~~~l~g~~i~g----~~i~v~~a~ 264 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAG----RPIKVGYAQ 264 (457)
T ss_pred CHHHHHHHHHhcCCcEECC----EEEEEEEcc
Confidence 9999999999999999999 777777754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=6.7e-28 Score=210.63 Aligned_cols=181 Identities=23% Similarity=0.318 Sum_probs=143.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 79 (297)
..++|||+|||+.+++++|.++|..||.|..+.++. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999965 35679999999999999999999999999987 6788888
Q ss_pred ccCCCCCCCCCC------------CCCCC------------------------------------------------CCC
Q 022425 80 AHGGRRHSSSMD------------RYSSY------------------------------------------------SSG 99 (297)
Q Consensus 80 ~~~~~~~~~~~~------------~~~~~------------------------------------------------~~~ 99 (297)
+........... ..... ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 864431100000 00000 000
Q ss_pred -----------C-CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHH
Q 022425 100 -----------G-SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYA 163 (297)
Q Consensus 100 -----------~-~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a 163 (297)
+ ........+..|||+|||+.+++++|.++|.+||.|..+.|+.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0 0000012344799999999999999999999999999999998863 46999999999999999
Q ss_pred HHHhcCCeeccceeeeEEEEeeccCC
Q 022425 164 IRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+..|||..++| +.|.|.+...+
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccCC
Confidence 99999999999 78888776544
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.1e-29 Score=195.14 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=141.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
--|||+.|.+.++-++|++.|.+||+|.+++|+. |++++||+||.|.+.++|+.||..|||.+|+++.|.-.|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3589999999999999999999999999999965 6899999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHH
Q 022425 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYA 163 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a 163 (297)
....... ...-..-.......+++|||+|++..+++++|++.|..||.|..|.++++.. |+||.|++.|.|..|
T Consensus 143 p~e~n~~----~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 143 PSEMNGK----PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAHA 216 (321)
T ss_pred ccccCCC----CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHHH
Confidence 5221110 0000011234456889999999999999999999999999999999999864 999999999999999
Q ss_pred HHHhcCCeecccee
Q 022425 164 IRKLDRSEFRNAFS 177 (297)
Q Consensus 164 ~~~l~g~~~~g~~~ 177 (297)
|-.+||.+|.|..+
T Consensus 217 Iv~mNntei~G~~V 230 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLV 230 (321)
T ss_pred HHHhcCceeCceEE
Confidence 99999999999433
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.7e-28 Score=217.37 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=141.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHh--cCCcccCCcEEEEEEccC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG--RDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~i~v~~~~~ 82 (297)
|+++|||+|||+.+|+++|+++|+.||+|..|.|+. .++||||+|.++++|+.||.. +|+..|.|++|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 579999999999999999999999999999999985 378999999999999999986 478999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 162 (297)
........ .. ........-..|+|.||++.+++++|.++|+.||.|..|.++.+..+++|||+|.+.++|.+
T Consensus 78 ~~~~~~~~---~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 78 QEIKRDGN---SD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQH 149 (481)
T ss_pred cccccCCC---Cc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHH
Confidence 43221110 00 00111223457999999999999999999999999999999887776799999999999999
Q ss_pred HHHHhcCCeeccceeeeEEEEeeccC
Q 022425 163 AIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 163 a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
|+..|||..|.|.. ..|.|++++.
T Consensus 150 A~~~Lng~~i~~~~--~~l~v~~sk~ 173 (481)
T TIGR01649 150 AKAALNGADIYNGC--CTLKIEYAKP 173 (481)
T ss_pred HHHHhcCCcccCCc--eEEEEEEecC
Confidence 99999999997632 3566666554
No 9
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.96 E-value=5.2e-29 Score=197.43 Aligned_cols=145 Identities=28% Similarity=0.528 Sum_probs=135.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (297)
-+|||||||.++++.+|+.||++||+|++|+|+ |+||||-.++...|..||.+|||..|+|..|.|+.++.+.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 469999999999999999999999999999999 889999999999999999999999999999999999877543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHH
Q 022425 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 166 (297)
.++|+|+||.+.++.++|+..|++||.|+.|+|.++ |+||.|+..++|..|+..
T Consensus 78 ----------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 78 ----------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred ----------------------ccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhc
Confidence 358999999999999999999999999999999999 999999999999999999
Q ss_pred hcCCeeccceeeeEEE
Q 022425 167 LDRSEFRNAFSRSYVR 182 (297)
Q Consensus 167 l~g~~~~g~~~~~~i~ 182 (297)
|+|.++.|+...+++.
T Consensus 132 l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLS 147 (346)
T ss_pred ccccccccceeeeeee
Confidence 9999999966555553
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=7.3e-28 Score=222.24 Aligned_cols=157 Identities=24% Similarity=0.393 Sum_probs=138.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
+|||+|||+++||++|+++|++||+|..|+|.. +++++|||||+|.+.++|++|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999965 46788999999999999999999999999999999999976332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHH
Q 022425 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMK 161 (297)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~ 161 (297)
... .....+|||+||+..+++++|.++|++||.|..|.+..+.. .+||||+|.+.++|.
T Consensus 82 ~~~------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SLR------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred ccc------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 111 22345799999999999999999999999999999988754 479999999999999
Q ss_pred HHHHHhcCCeeccceeeeEEEEeec
Q 022425 162 YAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
.|++.|||..+.| ..|.+...
T Consensus 144 ~Ai~~lng~~~~~----~~i~v~~~ 164 (562)
T TIGR01628 144 AAIQKVNGMLLND----KEVYVGRF 164 (562)
T ss_pred HHHHHhcccEecC----ceEEEecc
Confidence 9999999999999 55665443
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2e-27 Score=213.27 Aligned_cols=176 Identities=23% Similarity=0.343 Sum_probs=138.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~ 82 (297)
.++|||+|||.+++|++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 58999999999999999999999999999999975 4788999999999999999999999998885 77776665431
Q ss_pred CCCC--------CC-----------------------C--CCCCCCC-----CC-------------C-----C------
Q 022425 83 GRRH--------SS-----------------------S--MDRYSSY-----SS-------------G-----G------ 100 (297)
Q Consensus 83 ~~~~--------~~-----------------------~--~~~~~~~-----~~-------------~-----~------ 100 (297)
.... .. . ......| .. . +
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 1000 00 0 0000000 00 0 0
Q ss_pred --CC-----CCCCCCCceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 101 --SR-----GVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 101 --~~-----~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
.. ........+|||+||+..+++++|+++|.+| |.|+.|.+..+ ||||+|.+.++|++|++.|||.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 00 0011234679999999999999999999999 99999988765 99999999999999999999999
Q ss_pred eccceeeeEEEEeeccCC
Q 022425 172 FRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 172 ~~g~~~~~~i~v~~~~~~ 189 (297)
|.| ..|.|..+.+.
T Consensus 294 i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 294 LEG----SEIEVTLAKPV 307 (578)
T ss_pred ECC----EEEEEEEccCC
Confidence 999 88888887654
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.7e-27 Score=211.87 Aligned_cols=183 Identities=20% Similarity=0.241 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++++|||+||++ .+|+++|+++|+.||.|..|+|+.+ .+|||||+|.+.++|..||..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4678999999998 6999999999999999999999765 379999999999999999999999999999999999876
Q ss_pred CCCCCCCCC----C---CCCCCCC--CCCC--------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEe
Q 022425 83 GRRHSSSMD----R---YSSYSSG--GSRG--------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 143 (297)
Q Consensus 83 ~~~~~~~~~----~---~~~~~~~--~~~~--------~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~ 143 (297)
......... . ...+... .... ....+..+|||.|||..+++++|+++|..||. +..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 432211100 0 0011110 0000 11235678999999999999999999999998 77777764
Q ss_pred cC--CCcEEEEEEcCHHHHHHHHHHhcCCeecccee--eeEEEEeeccC
Q 022425 144 DR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS--RSYVRVREYDS 188 (297)
Q Consensus 144 ~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~--~~~i~v~~~~~ 188 (297)
.. ..++|||+|.+.++|..|+..|||..|.+... .-.|++.+++.
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 33 23699999999999999999999999998532 22456666543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.4e-26 Score=211.89 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||..+|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999964 57789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCC--CCC--CCCC----CCCCCCCCCceEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEe
Q 022425 82 GGRRHSSSMDRY--SSY--SSGG----SRGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFR 143 (297)
Q Consensus 82 ~~~~~~~~~~~~--~~~--~~~~----~~~~~~~~~~~l~V~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~ 143 (297)
............ ... ...+ .......+..+|+|.||.... ..++|+++|.+||.|..|.|+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 544322211111 000 0000 001112345788999986421 2367899999999999999987
Q ss_pred cC-------CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 144 DR-------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 144 ~~-------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
+. ..|++||+|.+.++|++|+..|||.+|+| ..|.+.+
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g----r~v~~~~ 498 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND----RVVVAAF 498 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 52 13689999999999999999999999999 5555544
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.5e-26 Score=211.64 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=136.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC------------CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~------------G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (297)
+...++|||||||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 344445443 458999999999999999996 999999
Q ss_pred CCcEEEEEEccCCCCCCCCCC-----CCCCCCC----CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 022425 71 DGYRLRVELAHGGRRHSSSMD-----RYSSYSS----GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (297)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~ 141 (297)
.|+.|+|.............. ....... ............+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999976543321110000 0000000 0011112345679999999999999999999999999999999
Q ss_pred EecC----CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 142 FRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 142 ~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
+.+. ..|||||+|.+.++|..|+..|||..|.| ..|.|..+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~----~~l~v~~a~ 373 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD----NKLHVQRAC 373 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEECc
Confidence 8764 34699999999999999999999999999 666776654
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=174.96 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=139.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+...|||||||+..++++.|+++|-+.|+|+.++|+. +...+|||||+|.++|+|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5668999999999999999999999999999999965 4567999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEecCC----CcEEEEEEc
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG----GMTGIVDYT 155 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~----~~~~fv~f~ 155 (297)
.... .....+..|||+||.+.+++..|.+.|..||.+.. ..++.+.+ .+|+||.|.
T Consensus 87 s~~~-------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQ-------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred cccc-------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 7221 12344579999999999999999999999998877 45666554 349999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
..+.+.+|+..|||..++. +.|+|....
T Consensus 148 sfeasd~ai~s~ngq~l~n----r~itv~ya~ 175 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCN----RPITVSYAF 175 (203)
T ss_pred hHHHHHHHHHHhccchhcC----CceEEEEEE
Confidence 9999999999999999999 666666543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.2e-27 Score=183.85 Aligned_cols=163 Identities=22% Similarity=0.340 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
...++|+|.-||.++|+|+|+.||..+|+|+.|+|+. +|.+.||+||-|-+++||++|+..|||..+..++|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3567899999999999999999999999999999954 6889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~ 156 (297)
.+... ...+..|||.+||..++..+|+++|.+||.|..-.|..+..+ |.+||.|+.
T Consensus 119 RPSs~--------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 119 RPSSD--------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred cCChh--------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 86543 345678999999999999999999999999998777766544 589999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
..+|+.|++.|||.+..|.. ..|.|.++..
T Consensus 179 r~EAe~AIk~lNG~~P~g~t--epItVKFann 208 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCT--EPITVKFANN 208 (360)
T ss_pred hhHHHHHHHhccCCCCCCCC--CCeEEEecCC
Confidence 99999999999999998833 5677776643
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=193.14 Aligned_cols=175 Identities=23% Similarity=0.321 Sum_probs=138.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEEEEEEcc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 81 (297)
.|-||||.||.++.|++|..||++.|+|-++.|+. +|.++|||||.|.+.++|++||+.||+.+|. |+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 47799999999999999999999999999999966 4789999999999999999999999999995 9999988875
Q ss_pred CCCC-------CCCC--------------------------CCCCCCCC-----CC------------------------
Q 022425 82 GGRR-------HSSS--------------------------MDRYSSYS-----SG------------------------ 99 (297)
Q Consensus 82 ~~~~-------~~~~--------------------------~~~~~~~~-----~~------------------------ 99 (297)
..-. ..+. ......|. ..
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 2210 0000 00000000 00
Q ss_pred --CCC-----CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee
Q 022425 100 --GSR-----GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (297)
Q Consensus 100 --~~~-----~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (297)
+.. ...+..-..|||.||+..++++.|+++|.+||.|..|..++| ||||.|.+.++|.+||+.+||++|
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 000 011223457999999999999999999999999999999988 999999999999999999999999
Q ss_pred ccceeeeEEEEeeccC
Q 022425 173 RNAFSRSYVRVREYDS 188 (297)
Q Consensus 173 ~g~~~~~~i~v~~~~~ 188 (297)
+| ..|.|-.+++
T Consensus 319 dG----~~iEvtLAKP 330 (506)
T KOG0117|consen 319 DG----SPIEVTLAKP 330 (506)
T ss_pred cC----ceEEEEecCC
Confidence 99 4555554444
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.8e-26 Score=211.70 Aligned_cols=178 Identities=19% Similarity=0.302 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC----CcEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVE 78 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~ 78 (297)
..++|||+|||.++|+++|+++|+.||+|..+.|.. ++..+|||||+|.+.++|.+|++.|||..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999965 4567899999999999999999999999999 9999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEc
Q 022425 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYT 155 (297)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~ 155 (297)
++......... ....+..............+|||+||+..+++++|.++|.+||.|..+.++.+.. .+||||+|.
T Consensus 257 ~a~~k~er~~~--~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 257 RAQKRAEREAE--LRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred cccChhhhHHH--HHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 87654332100 0000000001111234567899999999999999999999999999999998753 369999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
+.++|.+|+..|||..+.| ..|.|..+..
T Consensus 335 ~~~~A~~A~~~~~g~~~~g----k~l~V~~a~~ 363 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGG----KPLYVALAQR 363 (562)
T ss_pred CHHHHHHHHHHhcCCeeCC----ceeEEEeccC
Confidence 9999999999999999999 6666665543
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.9e-25 Score=201.60 Aligned_cols=176 Identities=20% Similarity=0.307 Sum_probs=136.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
+++|||+|||..+|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999965 357799999999999999999999999999999999999763
Q ss_pred CCCCCCCCC------------------------------C---CCCCCCCC-----------------------------
Q 022425 83 GRRHSSSMD------------------------------R---YSSYSSGG----------------------------- 100 (297)
Q Consensus 83 ~~~~~~~~~------------------------------~---~~~~~~~~----------------------------- 100 (297)
......... . .....+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 211100000 0 00000000
Q ss_pred ----C-CCC---CCCCCceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHH
Q 022425 101 ----S-RGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (297)
Q Consensus 101 ----~-~~~---~~~~~~~l~V~~l~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~ 162 (297)
. ..+ .......|+|.||..... .++|++.|.+||.|+.|.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 000 113456788888855443 4679999999999999999877777899999999999999
Q ss_pred HHHHhcCCeeccceeeeEEEEee
Q 022425 163 AIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 163 a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
|+..|||..|+| +.|.+..
T Consensus 426 A~~~lnGr~f~g----r~i~~~~ 444 (457)
T TIGR01622 426 AFQALNGRYFGG----KMITAAF 444 (457)
T ss_pred HHHHhcCcccCC----eEEEEEE
Confidence 999999999999 5555543
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.7e-26 Score=190.28 Aligned_cols=166 Identities=20% Similarity=0.380 Sum_probs=141.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCccc-C--CcEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-D--GYRLRVE 78 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~--g~~i~v~ 78 (297)
+.-+||||-||..|+|.||+++|++||.|.+|.|++ ++.++|+|||.|.+.++|.+|+..|++... . ..+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 445799999999999999999999999999999966 578899999999999999999999998544 3 4688888
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEc
Q 022425 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYT 155 (297)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~ 155 (297)
++...... .....+|||+-|+..+++.+|+++|.+||.|++|.|.++..+ |||||.|.
T Consensus 113 ~Ad~E~er-------------------~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 113 YADGERER-------------------IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFS 173 (510)
T ss_pred ccchhhhc-------------------cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEe
Confidence 88654421 234678999999999999999999999999999999998764 69999999
Q ss_pred CHHHHHHHHHHhcCCee-ccceeeeEEEEeeccCCCC
Q 022425 156 SYDDMKYAIRKLDRSEF-RNAFSRSYVRVREYDSRRS 191 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~-~g~~~~~~i~v~~~~~~~~ 191 (297)
+.+.|..||+.|||..- .| +...+-|.+++..+.
T Consensus 174 tke~A~~Aika~ng~~tmeG--cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEG--CSQPLVVKFADTQKD 208 (510)
T ss_pred hHHHHHHHHHhhccceeecc--CCCceEEEecccCCC
Confidence 99999999999999854 44 235677777776643
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.5e-25 Score=188.78 Aligned_cols=178 Identities=20% Similarity=0.299 Sum_probs=146.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..||||++||+.++.++|.++|+.+|+|..|.++.. +..+||+||.|.=+++++.|+..+++..|.|+.|.|.+++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 489999999999999999999999999999999763 35689999999999999999999999999999999999986
Q ss_pred CCCCCCC--CCCC---CCCCCCC-CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEE
Q 022425 83 GRRHSSS--MDRY---SSYSSGG-SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (297)
Q Consensus 83 ~~~~~~~--~~~~---~~~~~~~-~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~ 153 (297)
....... .... ..+.+.. .......+.|.|+|.|||..+...+|+.+|+.||.|..|.|+....+ |||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 5543311 0110 0011100 00111234899999999999999999999999999999999987665 599999
Q ss_pred EcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
|....+|..|++.+|+.+|+| +.|-|+++-
T Consensus 165 fk~~~dA~~Al~~~N~~~i~g----R~VAVDWAV 194 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDG----RPVAVDWAV 194 (678)
T ss_pred EeeHHHHHHHHHhccCceecC----ceeEEeeec
Confidence 999999999999999999999 677777653
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.4e-25 Score=171.33 Aligned_cols=172 Identities=23% Similarity=0.336 Sum_probs=141.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEEEc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELA 80 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~~ 80 (297)
..+|||.+||+.+|..||.++|.+||.|..-.|+. ++.++|.+||.|....+|+.||+.|||..--| .+|.|+++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 46799999999999999999999999999888744 57889999999999999999999999988766 58999999
Q ss_pred cCCCCCCCCCCCC---------------------------------CCCCCCC----------CCCCCCCCCceEEEeCC
Q 022425 81 HGGRRHSSSMDRY---------------------------------SSYSSGG----------SRGVSRRSDYRVLVTGL 117 (297)
Q Consensus 81 ~~~~~~~~~~~~~---------------------------------~~~~~~~----------~~~~~~~~~~~l~V~~l 117 (297)
+.+.......... ..|.+.. ........+|.|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8764433211100 0111100 01223456899999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 118 PSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 118 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
.+++++..|+++|.+||.|.++++++|.+ +||+||.+.+.++|..||..|||..++++..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 99999999999999999999999999876 3699999999999999999999999999443
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.4e-23 Score=176.70 Aligned_cols=162 Identities=22% Similarity=0.376 Sum_probs=131.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.-.|+|.|||+.+.+.+|..+|+.||.|.+|.|+. +++..|||||+|.+..+|..||+.|||..|+|++|.|.||.+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56799999999999999999999999999999954 5677899999999999999999999999999999999999865
Q ss_pred CCCCCCCCC---------------C-------------CCCC-------CC--------------------CC-C-----
Q 022425 84 RRHSSSMDR---------------Y-------------SSYS-------SG--------------------GS-R----- 102 (297)
Q Consensus 84 ~~~~~~~~~---------------~-------------~~~~-------~~--------------------~~-~----- 102 (297)
......... . +... .+ .. .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 543321100 0 0000 00 00 0
Q ss_pred ---------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHh
Q 022425 103 ---------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 103 ---------~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l 167 (297)
......+.+|||.|||+++++++|.+.|.+||+|..+.+..++.+ |.|||.|.++.+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 011223478999999999999999999999999999998887665 59999999999999999976
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.6e-23 Score=162.31 Aligned_cols=163 Identities=39% Similarity=0.635 Sum_probs=134.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (297)
..||||+||+.+.+.+|..||..||+|.+|.|+ .+|+||+|.++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 469999999999999999999999999999998 789999999999999999999999999999999998754322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHH
Q 022425 87 SSSMDRYSSYS-SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (297)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 165 (297)
... ...+.-. ......++..+.+.++|.++...+.+++|.+.|.++|.+....+.. +++||+|.+.++|..|+.
T Consensus 77 ~g~-~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 77 RGR-PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cCC-CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccceeehhhhhhhhcch
Confidence 200 0000000 0122345567889999999999999999999999999996555522 389999999999999999
Q ss_pred HhcCCeeccceeeeEEEE
Q 022425 166 KLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 166 ~l~g~~~~g~~~~~~i~v 183 (297)
.|++.++.+ +.|.+
T Consensus 152 ~l~~~~~~~----~~l~~ 165 (216)
T KOG0106|consen 152 KLDGKKLNG----RRISV 165 (216)
T ss_pred hccchhhcC----ceeee
Confidence 999999999 56665
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.5e-24 Score=172.88 Aligned_cols=168 Identities=21% Similarity=0.332 Sum_probs=140.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.|.||||.|.+.+.|+.|+..|..||+|+.|.|-+ +++.+|||||+|+-+|.|+.|++.|||..++|+.|+|....+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 37899999999999999999999999999999965 678999999999999999999999999999999999985332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYD 158 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~ 158 (297)
-.....- ..........-..|||..+.+++++.+|+..|+.||+|..|.+.+++.+ ||+||+|.+..
T Consensus 193 mpQAQpi---------ID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 193 MPQAQPI---------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred CcccchH---------HHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 1110000 0000111234568999999999999999999999999999999988654 69999999999
Q ss_pred HHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 159 DMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
...+|+..||-..++| .+++|-.+
T Consensus 264 s~~eAiasMNlFDLGG----QyLRVGk~ 287 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGG----QYLRVGKC 287 (544)
T ss_pred chHHHhhhcchhhccc----ceEecccc
Confidence 9999999999999999 77776543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.5e-22 Score=170.75 Aligned_cols=147 Identities=25% Similarity=0.352 Sum_probs=132.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (297)
..|||| ++||+..|+++|+.+|+|..+.|..+-.+.|||||.|.++++|.+||..||...+.|++|.|-|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 469999 8999999999999999999999944223899999999999999999999999999999999999874332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEcCHHHHHHHH
Q 022425 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAI 164 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~ 164 (297)
.|||.||++.++...|.++|+.||.|..|.+..+.++ || ||+|++.++|.+|+
T Consensus 78 ------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 78 ------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred ------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 2999999999999999999999999999999998875 58 99999999999999
Q ss_pred HHhcCCeeccceeeeEEEEeec
Q 022425 165 RKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 165 ~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
+.|||..+.| ..|.|...
T Consensus 133 ~~~ng~ll~~----kki~vg~~ 150 (369)
T KOG0123|consen 133 EKLNGMLLNG----KKIYVGLF 150 (369)
T ss_pred HHhcCcccCC----CeeEEeec
Confidence 9999999999 55555443
No 27
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=147.42 Aligned_cols=82 Identities=38% Similarity=0.583 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
...++|-|-||.+-+|.++|+.+|++||.|-+|.|+. |+.++|||||.|....+|+.|++.|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4678999999999999999999999999999999965 6788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.....
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 86553
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=3.5e-22 Score=176.34 Aligned_cols=165 Identities=22% Similarity=0.387 Sum_probs=137.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CC----CCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
++|||.||++.+|.++|..+|...|.|+.|.|.. ++ -+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4499999999999999999999999999999944 22 24599999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~ 156 (297)
....... .+...+.....+.|+|.|||..++..+|+++|..||.+..|.|+.-. ..|||||+|.+
T Consensus 596 ~~k~~~~-----------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 596 ENKPAST-----------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred cCccccc-----------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 8222211 11222334447899999999999999999999999999999998762 23689999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
+.+|..|++.|.+..+.| +.+-++++
T Consensus 665 ~~ea~nA~~al~STHlyG----RrLVLEwA 690 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYG----RRLVLEWA 690 (725)
T ss_pred cHHHHHHHHhhcccceec----hhhheehh
Confidence 999999999999999999 45545444
No 29
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.9e-21 Score=142.04 Aligned_cols=80 Identities=49% Similarity=0.803 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.-.++||||||+..+++.||..+|..||+|..|+|.. .+.|||||+|+++.+|+.|+..|||..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3478999999999999999999999999999999975 45899999999999999999999999999999999999865
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.87 E-value=9.2e-21 Score=146.53 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=139.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHH----HHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 2 SSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~~----~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
+..++.||||.||+..+..++|+. ||++||+|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|++|.|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 456777999999999999999877 9999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCC-----------------------CCCCCC---CCCC----CCCCCCCCceEEEeCCCCCCCHHHHH
Q 022425 78 ELAHGGRRHSSSMD-----------------------RYSSYS---SGGS----RGVSRRSDYRVLVTGLPSSASWQDLK 127 (297)
Q Consensus 78 ~~~~~~~~~~~~~~-----------------------~~~~~~---~~~~----~~~~~~~~~~l~V~~l~~~~~~~~l~ 127 (297)
++|+.......... ..+.+. .... ......+...+++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99985432211100 000000 0000 02225677899999999999999999
Q ss_pred HHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 128 DHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 128 ~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
.+|.+|.....+.+...... .|||+|.+...|..|...++|..+.
T Consensus 165 ~lf~qf~g~keir~i~~~~~-iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSG-IAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHhhCcccceeEeccCCCc-eeEEecchhhhhHHHhhhhccceec
Confidence 99999998888877765433 7999999999999999999998886
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=7.8e-20 Score=164.84 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 46789999999999999999999999999999999999987
Q ss_pred C
Q 022425 82 G 82 (297)
Q Consensus 82 ~ 82 (297)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 5
No 32
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.85 E-value=1.6e-21 Score=160.75 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=118.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC------CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
.....|.|.||.+++|.++|+.||..+|+|.++.|..+ +.....|||.|.+...+..|.+ |.+++|-|+.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34458999999999999999999999999999999542 2346799999999999999998 7777777777777
Q ss_pred EEccCCCCCCC----------CCCCCCCCCCC----------C------CCCCCC----------CCCceEEEeCCCCCC
Q 022425 78 ELAHGGRRHSS----------SMDRYSSYSSG----------G------SRGVSR----------RSDYRVLVTGLPSSA 121 (297)
Q Consensus 78 ~~~~~~~~~~~----------~~~~~~~~~~~----------~------~~~~~~----------~~~~~l~V~~l~~~~ 121 (297)
-.......... .......+.+. + ...++. .-..+++|++|+..+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 66543221110 00000000000 0 000110 112468999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee
Q 022425 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (297)
Q Consensus 122 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (297)
...++.+.|..+|+|...++.......+|.++|-.......|+. ++|.++
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred cchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 99999999999999999888877777788899988777777766 444443
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.4e-21 Score=149.55 Aligned_cols=138 Identities=22% Similarity=0.347 Sum_probs=116.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
|++...+|||||||...|||+-|..||+++|.|..|+|+.+ .|+|-++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56778899999999999999999999999999999999854 4566665
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~ 156 (297)
....... .+.......+||+.|...++.++|++.|.+||+|.++.|++|.++ ||+||.|.+
T Consensus 49 ~~p~nQs---------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQS---------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCC---------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 5332111 122333568999999999999999999999999999999998765 699999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
.++|+.||..|||..|++ +.|+..++...
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWATRK 142 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWATRK 142 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeeccccccC
Confidence 999999999999999999 88888877655
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=1.8e-20 Score=161.41 Aligned_cols=174 Identities=20% Similarity=0.313 Sum_probs=130.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
|...||||||..++|+++|..+|+.||.|..|.+.. +|..+||+||+|.+.++|.+|+..|||..|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 444599999999999999999999999999999954 68899999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCC--------CCC--CCCC-------------C-----------------------------CCCCC---
Q 022425 82 GGRRHSSSMDRY--------SSY--SSGG-------------S-----------------------------RGVSR--- 106 (297)
Q Consensus 82 ~~~~~~~~~~~~--------~~~--~~~~-------------~-----------------------------~~~~~--- 106 (297)
............ ..+ ..++ . ...+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 543333220000 000 0000 0 00000
Q ss_pred ----CCCceEEEeCCCCC-------CC---HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee
Q 022425 107 ----RSDYRVLVTGLPSS-------AS---WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (297)
Q Consensus 107 ----~~~~~l~V~~l~~~-------~~---~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (297)
.+...+.+.|+-.. |. .+++.+.|.++|+|+.|.|..+.. |+.||.|.+.++|..|+..|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 12223444444221 11 457888899999999988888766 7999999999999999999999999
Q ss_pred ccceeee
Q 022425 173 RNAFSRS 179 (297)
Q Consensus 173 ~g~~~~~ 179 (297)
.|+.+..
T Consensus 516 ~gr~Ita 522 (549)
T KOG0147|consen 516 AGRMITA 522 (549)
T ss_pred ccceeEE
Confidence 9966543
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.9e-20 Score=160.11 Aligned_cols=158 Identities=24% Similarity=0.396 Sum_probs=136.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
++...|||.||++.+|..+|.++|+.||+|+.|++..+ ..++|| ||+|.++++|.+|++.|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45566999999999999999999999999999999763 347899 9999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDD 159 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~ 159 (297)
....... .......-+.++|.+++...++..|..+|..+|.|..+.++.+..+ +|+||.|.+.++
T Consensus 153 ~~er~~~------------~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 153 KEEREAP------------LGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred hhhhccc------------ccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 5532211 0012344568899999999999999999999999999999986543 599999999999
Q ss_pred HHHHHHHhcCCeecc
Q 022425 160 MKYAIRKLDRSEFRN 174 (297)
Q Consensus 160 a~~a~~~l~g~~~~g 174 (297)
|..|+..||+..+.+
T Consensus 221 a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGD 235 (369)
T ss_pred HHHHHHhccCCcCCc
Confidence 999999999999987
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=2.3e-19 Score=132.74 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
..+++|||+||+..+++.+|+.+|..||.+..|+|..++ .+||||+|+++.+|+.|+..|+|..|+| ..|+|+..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCccccC----ceEEEEee
Confidence 347899999999999999999999999999999999955 4599999999999999999999999999 88899888
Q ss_pred cCCCC
Q 022425 187 DSRRS 191 (297)
Q Consensus 187 ~~~~~ 191 (297)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76644
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=1.5e-19 Score=136.06 Aligned_cols=82 Identities=29% Similarity=0.499 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..+++|||+|||+++|+++|+++|++||.|..|.|+. ++++++||||+|.+.++|+.||+.||+..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3578999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86544
No 38
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=6.6e-19 Score=133.61 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=74.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.+.....+.|.|.||.+.++.++|..+|++||.|.+|.|+.+..+ |||||.|....+|+.|++.|+|.+++|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---- 82 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---- 82 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----
Confidence 566778899999999999999999999999999999999998764 699999999999999999999999999
Q ss_pred eEEEEeeccC
Q 022425 179 SYVRVREYDS 188 (297)
Q Consensus 179 ~~i~v~~~~~ 188 (297)
..|+|+.++.
T Consensus 83 RelrVq~ary 92 (256)
T KOG4207|consen 83 RELRVQMARY 92 (256)
T ss_pred ceeeehhhhc
Confidence 7777776554
No 39
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=135.32 Aligned_cols=170 Identities=21% Similarity=0.313 Sum_probs=130.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCC----CcEEEEEEcChHHHHHHHHhcCCcccC---CcEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRV 77 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v 77 (297)
.-+||||.+||-++...+|+.||..|--.+.+.|+.+.+. +.+|||.|.+.++|.+|++.|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999988888888766543 489999999999999999999999997 889999
Q ss_pred EEccCCCCCCCCCCCC-----CCCCC---------------------------CC-CCC---------------------
Q 022425 78 ELAHGGRRHSSSMDRY-----SSYSS---------------------------GG-SRG--------------------- 103 (297)
Q Consensus 78 ~~~~~~~~~~~~~~~~-----~~~~~---------------------------~~-~~~--------------------- 103 (297)
++++...+........ ..+.. .+ ...
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9998543322110000 00000 00 000
Q ss_pred ------------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 104 ------------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 104 ------------~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
.....-.+|||.||.+++++++|+++|+.|-....+.|.....-..||++|++.+.|..||..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00012237999999999999999999999988877766654444489999999999999999999987
Q ss_pred ecc
Q 022425 172 FRN 174 (297)
Q Consensus 172 ~~g 174 (297)
+..
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 753
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.1e-20 Score=162.77 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=139.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
|++.+|||+--|+..+++-+|++||+.+|+|.+|.|+. ++.++|.|||+|.+++.+..||. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 46778999999999999999999999999999999965 45779999999999999999997 999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEc
Q 022425 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYT 155 (297)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~ 155 (297)
....+... .......+++.. ..+...|||+||..++++++|..+|+.||.|..|.+..+.. +||+||+|.
T Consensus 255 sEaeknr~---a~~s~a~~~k~~---~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 255 SEAEKNRA---ANASPALQGKGF---TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cHHHHHHH---Hhcccccccccc---ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 76433221 111111111111 12222399999999999999999999999999999998853 369999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeee
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
+.++|..|+.+|||.++.|..+++
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEE
Confidence 999999999999999999965543
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.8e-19 Score=149.55 Aligned_cols=178 Identities=23% Similarity=0.330 Sum_probs=140.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcc-cCC--cEEEEEEc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDG--YRLRVELA 80 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~i~v~~~ 80 (297)
+.+||||-|++.+||.+|+++|.+||.|++|.|+. ++.++|+|||+|.+.+-|..||+.|||.. +.| .+|.|.|+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 67899999999999999999999999999999977 46889999999999999999999999944 444 69999999
Q ss_pred cCCCCCCCC-----------------------------------------CCCCCCCC----------------------
Q 022425 81 HGGRRHSSS-----------------------------------------MDRYSSYS---------------------- 97 (297)
Q Consensus 81 ~~~~~~~~~-----------------------------------------~~~~~~~~---------------------- 97 (297)
...+..... ......+.
T Consensus 204 Dtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~ 283 (510)
T KOG0144|consen 204 DTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAA 283 (510)
T ss_pred ccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhh
Confidence 744322100 00000000
Q ss_pred ---------------------------C---------C---------------------------C--------------
Q 022425 98 ---------------------------S---------G---------------------------G-------------- 100 (297)
Q Consensus 98 ---------------------------~---------~---------------------------~-------------- 100 (297)
+ . +
T Consensus 284 ~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~ 363 (510)
T KOG0144|consen 284 ATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAAS 363 (510)
T ss_pred cccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccccc
Confidence 0 0 0
Q ss_pred ----------------------------------------------------CCCCCCCCCceEEEeCCCCCCCHHHHHH
Q 022425 101 ----------------------------------------------------SRGVSRRSDYRVLVTGLPSSASWQDLKD 128 (297)
Q Consensus 101 ----------------------------------------------------~~~~~~~~~~~l~V~~l~~~~~~~~l~~ 128 (297)
.....-..+..+||.+||-+.-..+|-.
T Consensus 364 ~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~ 443 (510)
T KOG0144|consen 364 LANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIA 443 (510)
T ss_pred ccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHH
Confidence 0000012456899999999999999999
Q ss_pred HHHhcCCeeEEEEEecCCCc----EEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 129 HMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 129 ~f~~~g~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.|..||.|...+++.++.++ |+||.|++..+|..||..|||..++.+..+..+.+
T Consensus 444 ~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 444 TFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred HhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 99999999999999998876 89999999999999999999999999655555543
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.81 E-value=3.1e-18 Score=139.64 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=141.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--------~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
..-++.|||.|||.++|.+++.++|++||-|.. |+|.. .|+.+|-|+|.|...+++..|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345678999999999999999999999997763 55533 57889999999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCCCC----------------C--CCCCCCCCCCCCCCCceEEEeCCCCCC----C-------H
Q 022425 73 YRLRVELAHGGRRHSSSMDRY----------------S--SYSSGGSRGVSRRSDYRVLVTGLPSSA----S-------W 123 (297)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~----------------~--~~~~~~~~~~~~~~~~~l~V~~l~~~~----~-------~ 123 (297)
+.|.|+.|+-.......+... . .+.+.-..........+|.|.|+-... + .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999998543322111110 0 011111112234567788899885421 2 4
Q ss_pred HHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 124 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
++|.+.+.+||.|..|.|...++.|.+.|.|.+.++|..||..|+|..++| ++|......+
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg----Rql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG----RQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc----eEEEEEEeCC
Confidence 567788999999999999999999999999999999999999999999999 6666555443
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=5.4e-19 Score=139.18 Aligned_cols=177 Identities=20% Similarity=0.298 Sum_probs=136.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCccc-CC--cEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DG--YRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~i~v~~ 79 (297)
+.++||||.|.+.-.|||++.+|..||+|++|.+.. ++.++|+|||+|.+.-+|..||..|+|..- .| -.|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999976 678899999999999999999999999443 33 5788888
Q ss_pred ccCCCCCC------------------------------------------------------------------------
Q 022425 80 AHGGRRHS------------------------------------------------------------------------ 87 (297)
Q Consensus 80 ~~~~~~~~------------------------------------------------------------------------ 87 (297)
+...++..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 76221110
Q ss_pred ----CCCC-------------C-----CCCCCCC-----CC---------------------------------------
Q 022425 88 ----SSMD-------------R-----YSSYSSG-----GS--------------------------------------- 101 (297)
Q Consensus 88 ----~~~~-------------~-----~~~~~~~-----~~--------------------------------------- 101 (297)
.... . ...+.+. +.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000 0 0000000 00
Q ss_pred -----------C---------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCH
Q 022425 102 -----------R---------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (297)
Q Consensus 102 -----------~---------~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~ 157 (297)
. ......+|+|||..||.+....+|.++|-.||.|+..+++.|..+ .|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 001136889999999999999999999999999999888877654 3999999999
Q ss_pred HHHHHHHHHhcCCeeccceeeeEE
Q 022425 158 DDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
..|+.||..|||..|+-+..++.+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhh
Confidence 999999999999999884443333
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=2.9e-19 Score=148.67 Aligned_cols=158 Identities=20% Similarity=0.333 Sum_probs=133.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
|+..+.++||||+|++.+|++.|++.|.+||+|.+|.++. ++.+++|+||+|++++.+.++|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3455789999999999999999999999999999999966 57789999999999999999987 5567899999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEE
Q 022425 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVD 153 (297)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~ 153 (297)
..+.+....... .......+|||++|+..+++.+|++.|.+||.|..+.++.+..+ +|+||.
T Consensus 80 k~av~r~~~~~~--------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 80 KRAVSREDQTKV--------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred eeccCccccccc--------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeE
Confidence 998876543321 11124568999999999999999999999999999888887654 599999
Q ss_pred EcCHHHHHHHHHHhcCCeecc
Q 022425 154 YTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g 174 (297)
|.+.+.+..++. ..-..|+|
T Consensus 146 ~~~e~sVdkv~~-~~f~~~~g 165 (311)
T KOG4205|consen 146 FDSEDSVDKVTL-QKFHDFNG 165 (311)
T ss_pred eccccccceecc-cceeeecC
Confidence 999998888776 56666677
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=133.12 Aligned_cols=86 Identities=35% Similarity=0.560 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
++|=+||||+-|+++++|..|+..|+.||+|+.|.|+. +++++|||||+|+++.+...|++..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36779999999999999999999999999999999954 789999999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 022425 80 AHGGRRHSS 88 (297)
Q Consensus 80 ~~~~~~~~~ 88 (297)
-.......|
T Consensus 178 ERgRTvkgW 186 (335)
T KOG0113|consen 178 ERGRTVKGW 186 (335)
T ss_pred ccccccccc
Confidence 765544433
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.3e-18 Score=121.93 Aligned_cols=78 Identities=36% Similarity=0.544 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+.++|||||||+.-+||++|.+||+++|+|..|.| ..+..+.|||||+|...++|..||..++|+.++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999998 335678999999999999999999999999999999999996
Q ss_pred c
Q 022425 81 H 81 (297)
Q Consensus 81 ~ 81 (297)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 5
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=5.1e-18 Score=112.48 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=64.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
|||+|||+++|+++|.++|++||.|..+.+.. .+..+++|||+|.+.++|+.|++.|||..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 89999999999999999999999999999966 467789999999999999999999999999999885
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=2e-16 Score=132.80 Aligned_cols=169 Identities=24% Similarity=0.337 Sum_probs=132.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~-~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.+.+||+|||+++.+.+|++||. +.|+|..|.|.. .++++|+|.|+|+++|.+++|++.||...+.|++|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999997 789999999976 478999999999999999999999999999999999987653
Q ss_pred CCCCCCC--------------------CCCCCCCCCC----------------------------------------C--
Q 022425 83 GRRHSSS--------------------MDRYSSYSSG----------------------------------------G-- 100 (297)
Q Consensus 83 ~~~~~~~--------------------~~~~~~~~~~----------------------------------------~-- 100 (297)
....... ......+..+ .
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 1110000 0000000000 0
Q ss_pred ---CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 101 ---SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 101 ---~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
...-.++...++||.||.+.+....|.+.|...|+|+.+.+-.++.+ ++|.++|.++-+|.+||..|++..+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 00112334568999999999999999999999999999988877653 699999999999999999999855444
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=1.1e-16 Score=136.50 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=129.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
...|-+.+||+++|++||.++|+.| .|..+.+.. ++++.|-|||+|+++|++++|++ .+...+..+-|.|..+....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 4567789999999999999999999 588888866 48999999999999999999999 89999999999999987665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEec---CCCcEEEEEEcCHHHH
Q 022425 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRD---RGGMTGIVDYTSYDDM 160 (297)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~---~~~~~~fv~f~~~~~a 160 (297)
+.... ...+... ......|-+.+||..|++++|.++|...--+.+ +.+..+ +.++-|||+|++++.|
T Consensus 88 ~d~~~-------~~~g~~s--~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 88 ADWVM-------RPGGPNS--SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccccc-------cCCCCCC--CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 43221 1111111 145678999999999999999999997765555 333333 4567999999999999
Q ss_pred HHHHHHhcCCeeccceeeeEEEEeec
Q 022425 161 KYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
++|+. -|...|+. ++|.|..+
T Consensus 159 e~Al~-rhre~iGh----RYIEvF~S 179 (510)
T KOG4211|consen 159 EIALG-RHRENIGH----RYIEVFRS 179 (510)
T ss_pred HHHHH-HHHHhhcc----ceEEeehh
Confidence 99998 45555555 77776643
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.74 E-value=2.5e-17 Score=132.33 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5899999999999999999999999999999998877678999999999999999996 99999999999999987543
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=2.1e-16 Score=131.56 Aligned_cols=177 Identities=18% Similarity=0.198 Sum_probs=141.2
Q ss_pred CCeEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 6 SRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 6 ~~~l~V~nL~-~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
++.|.|.||. ..||++-|..+|+-||.|..|+|...+ +..|+|+|.+...|+.|++.|+|..+.|++|.|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 6889999996 559999999999999999999997644 4789999999999999999999999999999999998665
Q ss_pred CCCCCCCCC-----CCCCC--CCCCC--------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE
Q 022425 85 RHSSSMDRY-----SSYSS--GGSRG--------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 149 (297)
Q Consensus 85 ~~~~~~~~~-----~~~~~--~~~~~--------~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~ 149 (297)
-........ ..+.. ..... ..-++..+|++.|+|..+++++|+..|...|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 443321111 11111 01111 1124567899999999999999999999999888877777666669
Q ss_pred EEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 150 GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 150 ~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
+++++++.++|..|+-.+++..+++. ..++|.+++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen---~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC---ceEEEEeec
Confidence 99999999999999999999998873 355665543
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3.1e-17 Score=147.89 Aligned_cols=126 Identities=22% Similarity=0.290 Sum_probs=99.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~--G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..++|||+||+.++|+++|+++|+.| |+|+.|.++ ++||||+|.+.++|++||+.|||..|.|+.|.|.|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 35789999999999999999999999 999999887 67999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCC---------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe
Q 022425 83 GRRHSSSMDRYSSYSSGGS---------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i 136 (297)
........- .......+. .........++++.|+++.+++..+.++|..+|.+
T Consensus 307 ~~~~~~~~~-~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~ 368 (578)
T TIGR01648 307 VDKKSYVRY-TRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPI 368 (578)
T ss_pred CCccccccc-ccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCccc
Confidence 543311000 000000000 01122356789999999999999999999988865
No 53
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=1.3e-18 Score=129.50 Aligned_cols=83 Identities=30% Similarity=0.520 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+++..|||||||+.+||.||..+|++||+|++|.|+. ||+++||||+.|+++.+...|+.+|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 5678899999999999999999999999999999954 7899999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 765544
No 54
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=138.44 Aligned_cols=173 Identities=20% Similarity=0.249 Sum_probs=133.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
...+.|+|+|||..+..++|..+|..||+|..+-|+.. ...|+|+|.++.+|.+|+..|....+...+|.++|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45689999999999999999999999999999955521 235999999999999999999999999999999998643
Q ss_pred CCCCCCC--CC-----CC----------CCC-CC----C----CC----CCCCCCCceEEEeCCCCCCCHHHHHHHHHhc
Q 022425 84 RRHSSSM--DR-----YS----------SYS-SG----G----SR----GVSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (297)
Q Consensus 84 ~~~~~~~--~~-----~~----------~~~-~~----~----~~----~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~ 133 (297)
.....+. .. .. ... +. . .. .......+.|||.||+...+.+.|...|.+.
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 3221000 00 00 000 00 0 00 0011233449999999999999999999999
Q ss_pred CCeeEEEEEecCCC-------cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 134 GDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 134 g~i~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
|.|..+.|..-.+. |||||+|.+.++|+.|+..|+|..++|+.+..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 99999988766544 79999999999999999999999999954433
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=6.9e-17 Score=109.00 Aligned_cols=81 Identities=36% Similarity=0.460 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
-+..|||.|||+++|.+++.+||.+||.|..|.|=.+..-+|.|||.|++..+|.+|+..|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 45789999999999999999999999999999996666679999999999999999999999999999999999987554
Q ss_pred C
Q 022425 85 R 85 (297)
Q Consensus 85 ~ 85 (297)
+
T Consensus 97 ~ 97 (124)
T KOG0114|consen 97 A 97 (124)
T ss_pred H
Confidence 3
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.68 E-value=2.5e-16 Score=124.51 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |||..|.+++|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45799999999999999999999999999999999888888999999999999999997 99999999999999977543
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.7e-16 Score=137.36 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=129.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.|||+|||..++++++.+++..||.+..+.+.. ++.++||||.+|.++..+..|+..|||+.++++.|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999999855 46789999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC--CCCCCCCCCC--CCCCCCCceEEEeCCCC--CC-C-------HHHHHHHHHhcCCeeEEEEEec-CC
Q 022425 82 GGRRHSSSMDR--YSSYSSGGSR--GVSRRSDYRVLVTGLPS--SA-S-------WQDLKDHMRRAGDVCFSQVFRD-RG 146 (297)
Q Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~V~~l~~--~~-~-------~~~l~~~f~~~g~i~~~~~~~~-~~ 146 (297)
........... ...+.+.... .....+...|.+.|+=. .+ . .++++..|.+||.|..|.+.++ ..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 66554433222 0011111111 11222233333333311 11 1 2345667889999999999987 22
Q ss_pred ------CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 147 ------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 147 ------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
.|..||+|.+.++++.|+..|+|.++.|..+
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 3589999999999999999999999999544
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=128.20 Aligned_cols=141 Identities=28% Similarity=0.459 Sum_probs=109.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++|||+|||..+|+++|.++|..||.|..|.|.. ++.++|||||+|.++++|..|+..|+|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999955 478899999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCC-CCC--CCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Q 022425 83 -GRRHSSSMDR-YSS--YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (297)
Q Consensus 83 -~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 146 (297)
.......... ... ................+++.+++..+....+...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1110000000 000 000112223345677899999999999999999999999997666665544
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.7e-16 Score=121.29 Aligned_cols=80 Identities=36% Similarity=0.587 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|-|.||+.+++|++|.+||..||.|..|.|. .+|.++|||||.|.+.++|++||..|||.=++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 578999999999999999999999999999999994 47899999999999999999999999999999999999999
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 60
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=6.9e-16 Score=132.46 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 79 (297)
..++|||+|||.++|+++|+++|++||+|+.|.|+. ++++++||||+|.+.++|++||+.||++.+.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999964 56788999999999999999999999999876 7999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886544
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=4.6e-16 Score=102.99 Aligned_cols=68 Identities=32% Similarity=0.664 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999653 45689999999999999999999999999999874
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5e-16 Score=110.00 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=71.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
-.|||.++...+||++|.+.|..||+|++|+|.. +|-.+|||+|+|++.++|++|+..|||..+.|++|.|.|+--.
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 3689999999999999999999999999999954 6778999999999999999999999999999999999998643
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.63 E-value=1.4e-15 Score=129.62 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcCh--HHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
....+||||||++.||+++|..+|..||.|..|.|+.... +|||||+|... .++.+||..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4568999999999999999999999999999999975322 99999999988 78999999999999999999999998
Q ss_pred C
Q 022425 82 G 82 (297)
Q Consensus 82 ~ 82 (297)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.3e-14 Score=117.99 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
=+.|||..+.++++++||+.+|+-||+|+.|.|.. ....+||+||+|.+......|+..||-+.++|+.|.|..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 36899999999999999999999999999999954 356799999999999999999999999999999999998874
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 3
No 65
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=122.91 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
...+.|+|.|||...-+-||...|++||+|++|.|+. +..+|||+||.|++++||++|-++|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457899999999999999999999999999999976 457899999999999999999999999999999999999875
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=5.9e-15 Score=97.79 Aligned_cols=71 Identities=44% Similarity=0.778 Sum_probs=65.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
+|||+|||..+++++|.++|..||+|..+.+..+ +.+.++|||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5999999999999999999999999999999654 5568999999999999999999999999999998873
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.60 E-value=8.2e-14 Score=115.04 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=138.4
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~-~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
-+.+.+.|.+|. ..++.+.|.++|..||.|+.|+++++. .|.|.|++.+....+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 467899999996 458999999999999999999998765 78999999999999999999999999999999999885
Q ss_pred CCCCCCC---------------CCCCCCCCCCC--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEec
Q 022425 83 GRRHSSS---------------MDRYSSYSSGG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 144 (297)
Q Consensus 83 ~~~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~ 144 (297)
.-..... +.....|...+ .......+.+.|+.-|.|..++++.|.++|...+. ...+.++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 4322110 11112222221 12223467889999999999999999999987663 444666544
Q ss_pred CCC--cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 145 RGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 145 ~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
+.. ..+++||++.++|.+|+..+|...|.+........+.
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 432 3789999999999999999999999886654444433
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=8.5e-15 Score=113.91 Aligned_cols=76 Identities=26% Similarity=0.423 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
-++||||+|++.++.+.|+++|++||+|++..|+. +++++||+||.|.+.+.|.+|++. .+-.|+|++-.|.++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 37899999999999999999999999999988854 689999999999999999999994 44689999999999875
No 69
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=1.5e-13 Score=103.43 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+||+..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..|+| ..|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 45677999999999999999999999999999999998754 4699999999999999999999999999 778
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|+.+..+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 88877654
No 70
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.56 E-value=2.3e-13 Score=113.74 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=130.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEEccCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGR 84 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~~~~ 84 (297)
-.++|+|+-+.||.|-|.++|+.||.|..|.-.. +...=.|+|+|.+.+.|+.|...|+|..|. .+.|.|++++-..
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 4578999999999999999999999998875432 222345999999999999999999998885 4688888876221
Q ss_pred CCC----------CCCCCCCC-------------CC-----CCCCC-------------C--CCCCCCceEEEeCCCC-C
Q 022425 85 RHS----------SSMDRYSS-------------YS-----SGGSR-------------G--VSRRSDYRVLVTGLPS-S 120 (297)
Q Consensus 85 ~~~----------~~~~~~~~-------------~~-----~~~~~-------------~--~~~~~~~~l~V~~l~~-~ 120 (297)
... ........ +. .++.. + ..+..+..|.|.||.+ .
T Consensus 230 LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 230 LNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEA 309 (492)
T ss_pred ceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhc
Confidence 110 00000000 00 00000 0 0011257788888765 5
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 121 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
++.+.|..+|.-||.|..|.|..++.. -|+|+|.+...|+-|+..|+|..+.| ..|++..++..
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~g----k~lrvt~SKH~ 373 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYG----KKLRVTLSKHT 373 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceecC----ceEEEeeccCc
Confidence 799999999999999999999988763 79999999999999999999999999 77777766543
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=6.3e-13 Score=106.83 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=70.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
....+-++|||.-|++.+++..|+..|..||.|..|.|+.+.. .|||||+|++..++..|.+..+|.+|+| .
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg----r 171 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG----R 171 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC----c
Confidence 3346778999999999999999999999999999999998854 4699999999999999999999999999 5
Q ss_pred EEEEeecc
Q 022425 180 YVRVREYD 187 (297)
Q Consensus 180 ~i~v~~~~ 187 (297)
.|-|+...
T Consensus 172 ri~VDvER 179 (335)
T KOG0113|consen 172 RILVDVER 179 (335)
T ss_pred EEEEEecc
Confidence 55555443
No 72
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=7.2e-14 Score=93.02 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCC--CCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
+|+|+|||+.+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997643 4589999999999999999999999999999999864
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=5.2e-14 Score=88.59 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.2
Q ss_pred HHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 23 l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
|.++|++||+|..|.+.... .++|||+|.+.++|..|+..|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 699999999999999999999999999999999985
No 74
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-14 Score=111.68 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
...++||||+|...||+.-|...|-.||.|.+|.++. +.+.+|||||+|...|+|..||.+||+.++.|++|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 022425 81 HGGRRHS 87 (297)
Q Consensus 81 ~~~~~~~ 87 (297)
++.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9876544
No 75
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-14 Score=118.12 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.|.+.|||..|.+.+|.++|.-||+.||+|..|.|+. +|.+..||||+|.+.++|++|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 5789999999999999999999999999999999954 7888999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 022425 81 HGGRRHSS 88 (297)
Q Consensus 81 ~~~~~~~~ 88 (297)
+...+..+
T Consensus 317 QSVsk~k~ 324 (479)
T KOG0415|consen 317 QSVSKVKY 324 (479)
T ss_pred hhhhhhhc
Confidence 86655333
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=7.3e-14 Score=92.14 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=62.5
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 11 V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
|+|||..+++++|.++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999965 35678999999999999999999999999999998873
No 77
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.51 E-value=4e-12 Score=105.24 Aligned_cols=176 Identities=17% Similarity=0.154 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCC--CCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEE
Q 022425 4 RSSRTLYVGNLP--GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~--~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~ 79 (297)
.+++.|.+.=|. +.+|.+-|+.|....|+|..|.|... .--.|.|||.+.+.|++|.+.|||..|. .++|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 466777766554 56999999999999999999988642 3458999999999999999999998884 67999999
Q ss_pred ccCCCCCC-------CC------------CCC--------------CCCCCC-------C---CCC--------------
Q 022425 80 AHGGRRHS-------SS------------MDR--------------YSSYSS-------G---GSR-------------- 102 (297)
Q Consensus 80 ~~~~~~~~-------~~------------~~~--------------~~~~~~-------~---~~~-------------- 102 (297)
|++.+-.. |. ... ...+.+ + +..
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 98643211 00 000 000000 0 000
Q ss_pred -----CCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 103 -----GVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 103 -----~~~~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
.....+++.++|.+|... ++-+.|..+|+.||.|..|.+++...+ .|.|++.+..+.+.|+..||+..+.|
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lfG-- 352 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLFG-- 352 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCcccc--
Confidence 011235778999999764 688999999999999999999988765 79999999999999999999999988
Q ss_pred eeeEEEEeec
Q 022425 177 SRSYVRVREY 186 (297)
Q Consensus 177 ~~~~i~v~~~ 186 (297)
.+|.+..+
T Consensus 353 --~kl~v~~S 360 (494)
T KOG1456|consen 353 --GKLNVCVS 360 (494)
T ss_pred --ceEEEeec
Confidence 45555443
No 78
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.51 E-value=6e-14 Score=122.18 Aligned_cols=79 Identities=33% Similarity=0.644 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
+.|||||||+++++++|.++|+..|.|..++++. +|+++||||++|.++++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999965 6889999999999999999999999999999999999998754
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 79
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.7e-14 Score=119.06 Aligned_cols=78 Identities=28% Similarity=0.505 Sum_probs=72.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 85 (297)
-+.|||.||+.++|++.|+++|++||.|+.|+.+ +.||||-|.+-++|.+||+.|||++|+|..|.|.+|++..+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 4789999999999999999999999999999877 66999999999999999999999999999999999998766
Q ss_pred CCC
Q 022425 86 HSS 88 (297)
Q Consensus 86 ~~~ 88 (297)
...
T Consensus 334 ~k~ 336 (506)
T KOG0117|consen 334 KKK 336 (506)
T ss_pred hcc
Confidence 543
No 80
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=7.4e-14 Score=111.73 Aligned_cols=76 Identities=37% Similarity=0.657 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
+.+++|+||||.+.++.++|++.|++||+|.+|+|+ ++|+||.|.-.++|..|+..|||.+|.|+.|+|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 578999999999999999999999999999999999 889999999999999999999999999999999998754
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
-
T Consensus 151 l 151 (346)
T KOG0109|consen 151 L 151 (346)
T ss_pred c
Confidence 3
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=4.2e-13 Score=95.27 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
...+|.|||+++.+.+++++|.+.|..||+|.++++..+..+ |||+|+|++.++|+.|++.|||..+.| ..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Cce
Confidence 457899999999999999999999999999999999988765 499999999999999999999999999 677
Q ss_pred EEeec
Q 022425 182 RVREY 186 (297)
Q Consensus 182 ~v~~~ 186 (297)
.|+++
T Consensus 145 ~VDw~ 149 (170)
T KOG0130|consen 145 SVDWC 149 (170)
T ss_pred eEEEE
Confidence 77765
No 82
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=1.7e-12 Score=85.71 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=58.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
|||+|||..+++++|.++|.+||.+..+.+..+.. .++|||+|.+.++|+.|++.|+|..+.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 79999999999999999999999999999998622 3599999999999999999999999999
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.43 E-value=1.2e-11 Score=104.35 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
-..++||+||.+.+..+.|.+.|.--|.|..|.+-. .+.++|||.++|.++-+|..||..|++.-++.++..+.+
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 356899999999999999999999999999998844 467899999999999999999999997666666665555
No 84
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.9e-12 Score=108.67 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=119.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe-cC----CCCCc---EEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK-IP----PRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~-~~----~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
=++.||||+||++++|++|...|..||.+.-=+=. .. -.++| |+|+.|+++..++..|..+.- ....+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~y 334 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYY 334 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceE
Confidence 36889999999999999999999999976432221 11 12356 999999999999988765543 455555
Q ss_pred EEEccCCCCCCCCCCCCCCCCCC---CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCC----Cc
Q 022425 77 VELAHGGRRHSSSMDRYSSYSSG---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRG----GM 148 (297)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~----~~ 148 (297)
+.++.+..+...-......+... .....+..+..+|||++||-.++.++|..+|. -||.|+.+-|-.|+. .|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 55555544433211111100000 11334467788999999999999999999999 699999999988843 46
Q ss_pred EEEEEEcCHHHHHHHHHH----hcCCeecc
Q 022425 149 TGIVDYTSYDDMKYAIRK----LDRSEFRN 174 (297)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~----l~g~~~~g 174 (297)
-|-|.|.+...-.+||.. |+..+|..
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccce
Confidence 799999999998888874 45555554
No 85
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=1.8e-12 Score=85.40 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.8
Q ss_pred HHHHHHHHh----cCCCeeEEE-Eec---C--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 20 MREVEDLFY----KYGPIVDID-LKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 20 ~~~l~~~F~----~~G~V~~~~-~~~---~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
+++|.++|. +||.|..|. |.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999985 422 3 778999999999999999999999999999999986
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=2.6e-12 Score=104.66 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
........|+|.|||....+.||..+|.+||+|.+|+|+.+.. +||+||.|++.++|++|..+|||..|.| ++|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG----RkI 166 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG----RKI 166 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec----eEE
Confidence 3356678999999999999999999999999999999998864 4799999999999999999999999999 888
Q ss_pred EEeeccC
Q 022425 182 RVREYDS 188 (297)
Q Consensus 182 ~v~~~~~ 188 (297)
.|..+..
T Consensus 167 EVn~ATa 173 (376)
T KOG0125|consen 167 EVNNATA 173 (376)
T ss_pred EEeccch
Confidence 8876544
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.5e-13 Score=105.70 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=112.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
...+||||+||...|+|+-|.++|-+-|+|..|.|.. +++.+ ||||.|+++..+..|++.|||..+.+.+|+|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3568999999999999999999999999999999965 44545 99999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYD 158 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~ 158 (297)
...-. -|...++.+.+...|...|.+..+.+..+.++ .++|+.+.-..
T Consensus 86 G~sha-----------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 86 GNSHA-----------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred CCCcc-----------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 33211 14555677778888888898888777766542 37888888777
Q ss_pred HHHHHHHHhcCCee
Q 022425 159 DMKYAIRKLDRSEF 172 (297)
Q Consensus 159 ~a~~a~~~l~g~~~ 172 (297)
..-.++....+...
T Consensus 137 ~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 137 AVPFALDLYQGLEL 150 (267)
T ss_pred cCcHHhhhhcccCc
Confidence 77777777666554
No 88
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=3.9e-12 Score=105.60 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=118.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCC----CeeEEEE-ec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYG----PIVDIDL-KI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G----~V~~~~~-~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.|-..+||+++|+.||.++|..-. -++.|-+ .. +|+..|-|||.|..+++|+.|+. -|...++-+.|.|..+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHh
Confidence 455679999999999999996322 3334434 33 78889999999999999999997 45555555555544332
Q ss_pred CCCCC-----CCCCCC----CCCCCC--CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE---EEEEecCC-
Q 022425 82 GGRRH-----SSSMDR----YSSYSS--GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF---SQVFRDRG- 146 (297)
Q Consensus 82 ~~~~~-----~~~~~~----~~~~~~--~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~---~~~~~~~~- 146 (297)
..... ...... ..+..+ .....++......|-+.+||+.++.++|.++|..|...+. +++..+..
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qG 321 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQG 321 (508)
T ss_pred HHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCC
Confidence 11000 000000 000111 1223344455778999999999999999999999874433 66665543
Q ss_pred --CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 147 --GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 147 --~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
.|-|||+|.+.++|..|+...++....+ ++|.|-.
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp 358 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFP 358 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEee
Confidence 4689999999999999999999988866 7776654
No 89
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=3e-12 Score=115.00 Aligned_cols=77 Identities=30% Similarity=0.514 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~ 85 (297)
++|||||+|+.+|++.||.++|+.||+|..|.|.. ++++|||.+..-.+|.+|+.+|++..|.++.|+|.|+.....
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 68999999999999999999999999999999974 489999999999999999999999999999999999986543
No 90
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=1.1e-11 Score=99.94 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=68.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
..+|||+||++.+++++|+++|..||.|..|.|..+. ..+||||+|.+.++|+.|+. |||..|.| ..|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g----r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD----QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC----ceEEEEecc
Confidence 4689999999999999999999999999999999886 35799999999999999995 99999999 777777765
Q ss_pred CC
Q 022425 188 SR 189 (297)
Q Consensus 188 ~~ 189 (297)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 43
No 91
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.2e-12 Score=119.27 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=134.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.|||+|||+..+++.+|+..|..+|.|..|.|..+ +....||||.|.+...+-.|...|.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999999654 4446799999999999999999999988876666666654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~ 161 (297)
+. ....+.++|++|..-+....|..+|..||.|..|.+-+... |++|+|++...|+
T Consensus 450 ~k----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 PK----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQ 505 (975)
T ss_pred cc----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccch
Confidence 31 34456899999999999999999999999999988876654 9999999999999
Q ss_pred HHHHHhcCCeeccceeeeEEEEeecc
Q 022425 162 YAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
.|+..|-|..++|... .+.|+.+.
T Consensus 506 ~a~~~~rgap~G~P~~--r~rvdla~ 529 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPR--RLRVDLAS 529 (975)
T ss_pred hhHHHHhcCcCCCCCc--cccccccc
Confidence 9999999999998432 35555443
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.4e-11 Score=91.20 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=71.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
..+.|||+|||..+.+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..++| ..++|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEec
Confidence 457899999999999999999999999999999987655 4599999999999999999999999999 88899988
Q ss_pred cCCC
Q 022425 187 DSRR 190 (297)
Q Consensus 187 ~~~~ 190 (297)
...+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7653
No 93
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.3e-11 Score=87.00 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+||..-+++++|.++|.++|.|..|.+-.+..+ |||||+|.+.++|+.|+..++|..++. ..|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----cce
Confidence 346789999999999999999999999999999888777665 599999999999999999999999999 788
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
+++++-+-
T Consensus 109 r~D~D~GF 116 (153)
T KOG0121|consen 109 RIDWDAGF 116 (153)
T ss_pred eeeccccc
Confidence 88876543
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.6e-11 Score=107.83 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=131.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-----------C-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-----------G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
.....++|++||+.++++.+..+|..- | .|..|.|. ..++||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 445789999999999999999999754 2 35666654 348899999999999999999 9999999
Q ss_pred CcEEEEEEccCCCCCCCCCCCCC---CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--
Q 022425 72 GYRLRVELAHGGRRHSSSMDRYS---SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-- 146 (297)
Q Consensus 72 g~~i~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-- 146 (297)
|.++++.--......+....... .+...-....-......++|++||..+++.++.++...||.+....+..+.+
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 99988776544332222111111 1111122233345678899999999999999999999999999988887755
Q ss_pred --CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 147 --GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 147 --~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
++|||.+|-+......|+..|||+.+++...
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~l 361 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKL 361 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCcee
Confidence 4699999999999999999999999999433
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.7e-12 Score=100.32 Aligned_cols=83 Identities=22% Similarity=0.428 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.|+|||..||.+.++.||.+.|-.||.|+..++.. |+.++-|+||.|.++.+|+.||..|||..|+-+.|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35679999999999999999999999999999988843 678999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
..++..
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 776553
No 96
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=2.9e-11 Score=79.76 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=57.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
|+|+|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..++|..++|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 78999999999999999999999999999998864 3599999999999999999999999999
No 97
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5e-11 Score=93.48 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....++|.|.||+.++++.+|+++|.+||.|..+.|..+..+ |||||.|...++|.+||..|||.-++. .-
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EE
Confidence 3456778999999999999999999999999999999999886 499999999999999999999999988 78
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
+.|+++++.
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 888888754
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=3.7e-11 Score=103.05 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCH--HHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~--~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
.....|||+||++.+++++|..+|..||.|..+.|++....|||||+|.+. .++.+||..|||..+.| +.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEe
Confidence 445799999999999999999999999999999999777778999999987 78999999999999999 888888
Q ss_pred eccC
Q 022425 185 EYDS 188 (297)
Q Consensus 185 ~~~~ 188 (297)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 7664
No 99
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=6.5e-11 Score=80.33 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
++..+..|||.|||..++.+++-++|.+||.|..|.+-..+++ |.|||.|++..+|..|++.|+|..+++ +++.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEE
Confidence 3455678999999999999999999999999999999877665 699999999999999999999999999 66666
Q ss_pred eec
Q 022425 184 REY 186 (297)
Q Consensus 184 ~~~ 186 (297)
-..
T Consensus 90 lyy 92 (124)
T KOG0114|consen 90 LYY 92 (124)
T ss_pred Eec
Confidence 543
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=1.1e-10 Score=92.85 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=66.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
.+++|+|+||++.+++++|+++|..||+|..|.|..+... ++|||+|.+.++|+.|+. |+|..|.+ ..|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d----~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVD----QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCC----ceEEEEeC
Confidence 4689999999999999999999999999999999988654 599999999999999995 99999999 56666654
Q ss_pred c
Q 022425 187 D 187 (297)
Q Consensus 187 ~ 187 (297)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=2.7e-11 Score=90.85 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
+.....+|||+||+..++++.|+++|-++|.|++++++++. ..||||++|.+.++|+.|++.||..++.| ..
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg----rp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG----RP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC----ce
Confidence 45678899999999999999999999999999999999874 35799999999999999999999999999 67
Q ss_pred EEEeecc
Q 022425 181 VRVREYD 187 (297)
Q Consensus 181 i~v~~~~ 187 (297)
|+|....
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 7776655
No 102
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=2e-10 Score=75.66 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=59.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
+|+|.|||..++.++|.++|.+||.+..+.+..+. ..++|||+|.+.++|+.|+..+++..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 48999999999999999999999999999888765 34699999999999999999999999988
No 103
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=5e-11 Score=91.34 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEE---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~-G~V~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
....+||..||.-+.+.+|..+|.+| |.|..+.| +.||.++|||||+|++++.|.-|-+.||+..+.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999999 78888888 458999999999999999999999999999999999999996
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 544
No 104
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=95.47 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHH-HhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI-RGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~-~~l~g~~~~g~~i~v~~~~~ 82 (297)
...++|||+||...++|.+|+++|.+||+|..|.+... +++|||+|.+-+.|+.|. +.+|..+|+|..|+|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45689999999889999999999999999999999643 679999999999999877 45666788999999999887
No 105
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.10 E-value=2.3e-10 Score=99.84 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++|||.+|...+-..+|++||++||+|+..+|+.. +..+-|+||+|.+..+|.+||.+|+.+.|.|+.|.|+.+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999763 33467999999999999999999999999999999999986
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 543
No 106
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=4.6e-11 Score=104.10 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=100.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
-++.+|+|-|||..|++++|..+|+.||+|..|.. +....+.+||+|.+..+|+.|++.||+..|.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 46789999999999999999999999999999554 4445899999999999999999999999999999982111110
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCc---eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHH
Q 022425 84 RRHSSSM-DRYSSYSSGGSRGVSRRSDY---RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 159 (297)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~ 159 (297)
....... .....+... ....+..+| .+++ .|++.....-++..+.-+|.+..-....-. ..-|++|.+..+
T Consensus 151 ~~~~~~~~~~~~~~~~p--~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~--hq~~~~~~~~~s 225 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSP--LANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPGRETPLLN--HQRFVEFADNRS 225 (549)
T ss_pred cchhcccchhhhhccch--hhcCCCCCCcCCccee-eeccchhhhhhhcchhccCccccccccchh--hhhhhhhccccc
Confidence 0000000 000111111 111111221 2332 288887776666666666765441111111 145677777766
Q ss_pred HHHHHHHhcCCeecc
Q 022425 160 MKYAIRKLDRSEFRN 174 (297)
Q Consensus 160 a~~a~~~l~g~~~~g 174 (297)
+..+...+ |..+.+
T Consensus 226 ~a~~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 226 YAFSEPRG-GFLISN 239 (549)
T ss_pred hhhcccCC-ceecCC
Confidence 64444422 444444
No 107
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.09 E-value=4.3e-10 Score=90.51 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
-.++|+|.|||+.|+++||++||..||+++.+-|.. .+.+.|.|-|.|...++|..||+.|||+.++|.+|++.+...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 347899999999999999999999999888877744 578899999999999999999999999999999999999875
Q ss_pred CCCC
Q 022425 83 GRRH 86 (297)
Q Consensus 83 ~~~~ 86 (297)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5443
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=1.9e-09 Score=71.28 Aligned_cols=64 Identities=22% Similarity=0.404 Sum_probs=59.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
+|+|.|||..+++++|.++|..+|.+..+.+..... .++|||+|.+.++|..|++.+++..+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 478999999999999999999999999999998764 5699999999999999999999999988
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.4e-11 Score=92.29 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
....|||+|||+.+++.+|..+|++||+|++|.++++..+ ||||+.|++......|++.|||..|.| +.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEe
Confidence 3458999999999999999999999999999999999876 499999999999999999999999999 77887
Q ss_pred eeccC
Q 022425 184 REYDS 188 (297)
Q Consensus 184 ~~~~~ 188 (297)
+--..
T Consensus 110 DHv~~ 114 (219)
T KOG0126|consen 110 DHVSN 114 (219)
T ss_pred eeccc
Confidence 75433
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=1e-09 Score=71.93 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=56.3
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 114 V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
|.|||..++.++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..|++..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 578999999999999999999999999988765 4699999999999999999999999988
No 111
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-10 Score=94.62 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=73.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
..++.+.|||+.|.+.++.++|+-+|+.||+|..|.|+.+..+| ||||+|++.+.+++|.-+|++..|+. +.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD----rR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD----RR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc----ce
Confidence 35678899999999999999999999999999999999998886 99999999999999999999999999 78
Q ss_pred EEEeecc
Q 022425 181 VRVREYD 187 (297)
Q Consensus 181 i~v~~~~ 187 (297)
|.|+++.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 8887654
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.08 E-value=1.4e-11 Score=103.59 Aligned_cols=141 Identities=25% Similarity=0.388 Sum_probs=116.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCcEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~--G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~~~~~ 83 (297)
+.|||+||.+.++..+|..+|..- |--..+-|+ .|||||.+.++.+|.+|++.|+| ..+.|+.+.|+++.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 569999999999999999999744 222222222 78999999999999999999999 5667999999998765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-ecCCCcEEEEEEcCHHHHHH
Q 022425 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF-RDRGGMTGIVDYTSYDDMKY 162 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~~fv~f~~~~~a~~ 162 (297)
.... ..+.|.|+|+...++.|..++.+||.+..|... .+..+...-|.|.+.+.+..
T Consensus 77 kqrs----------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQRS----------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHHh----------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 5433 358899999999999999999999999998764 34444456688899999999
Q ss_pred HHHHhcCCeecc
Q 022425 163 AIRKLDRSEFRN 174 (297)
Q Consensus 163 a~~~l~g~~~~g 174 (297)
|+.+|+|-.+..
T Consensus 135 ai~kl~g~Q~en 146 (584)
T KOG2193|consen 135 AIHKLNGPQLEN 146 (584)
T ss_pred HHHhhcchHhhh
Confidence 999999998877
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=1.3e-09 Score=68.32 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=48.2
Q ss_pred HHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 126 l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|+..|||..+.| ..|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 67899999999999998776 5699999999999999999999999999 6677654
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.6e-10 Score=88.03 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....+|||++|...+++..|...|-.||.|.+|.++.+-. .+|+||+|+..++|..||+.||+.++.| +.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rti 82 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTI 82 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeE
Confidence 34557999999999999999999999999999999987743 4699999999999999999999999999 888
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
+|..+.+.+
T Consensus 83 rVN~AkP~k 91 (298)
T KOG0111|consen 83 RVNLAKPEK 91 (298)
T ss_pred EEeecCCcc
Confidence 998887764
No 115
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.03 E-value=4e-10 Score=94.40 Aligned_cols=83 Identities=24% Similarity=0.515 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.+|||++||.++++++|++.|++||.|..+.++. +..+++|+||.|.+++.+.+++. +..+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 467999999999999999999999999999988865 35679999999999999999998 88899999999999999
Q ss_pred CCCCCCC
Q 022425 82 GGRRHSS 88 (297)
Q Consensus 82 ~~~~~~~ 88 (297)
+......
T Consensus 175 pk~~~~~ 181 (311)
T KOG4205|consen 175 PKEVMQS 181 (311)
T ss_pred chhhccc
Confidence 8776544
No 116
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.02 E-value=6.1e-10 Score=99.51 Aligned_cols=80 Identities=24% Similarity=0.433 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC------CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
..+++|||+||++.++++.|...|..||+|..|+|++. .....++||.|.+-.+|++|++.|+|..|.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 35789999999999999999999999999999999763 234689999999999999999999999999999999
Q ss_pred EEccCC
Q 022425 78 ELAHGG 83 (297)
Q Consensus 78 ~~~~~~ 83 (297)
.|++..
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 998643
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.95 E-value=2.4e-08 Score=86.14 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=112.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~-~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.-+|-+.+||+.||++||.++|+-.-.|.. |.|+. -+.+.|-|||+|++++.|+.|+. -|...|..+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4467889999999999999999998755554 33433 35678999999999999999998 67788888888888764
Q ss_pred CCCCCC---------C---C-----CCCC--------C------C---C-------------C---CCC--------CCC
Q 022425 82 GGRRHS---------S---S-----MDRY--------S------S---Y-------------S---SGG--------SRG 103 (297)
Q Consensus 82 ~~~~~~---------~---~-----~~~~--------~------~---~-------------~---~~~--------~~~ 103 (297)
...... . . .... . . . . ..+ ...
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 110000 0 0 0000 0 0 0 0 000 000
Q ss_pred ---------------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHH
Q 022425 104 ---------------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIR 165 (297)
Q Consensus 104 ---------------~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~ 165 (297)
.....+..++..+||+..+..++..+|...-.+ .++|...+. ++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 000122567888999999999999999876554 555554443 4689999999999999987
Q ss_pred HhcCCeecc
Q 022425 166 KLDRSEFRN 174 (297)
Q Consensus 166 ~l~g~~~~g 174 (297)
-++..+..
T Consensus 340 -kd~anm~h 347 (510)
T KOG4211|consen 340 -KDGANMGH 347 (510)
T ss_pred -cCCcccCc
Confidence 34445544
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=7.2e-11 Score=107.52 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=111.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
...++||.||++.+.+.+|...|..+|.|..+.+. ..+..+|+|||+|..+++|.+||....+ .+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhhh--------
Confidence 34678999999999999999999999987777663 3577899999999999999999994444 44441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYD 158 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~ 158 (297)
..++|.|+|...+.++|+.+|.++|.+..+.++...+ .|.++|.|.+..
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 2678899999999999999999999999977665543 568999999999
Q ss_pred HHHHHHHHhcCCeecc
Q 022425 159 DMKYAIRKLDRSEFRN 174 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g 174 (297)
+|..++...+...+.-
T Consensus 789 ~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRE 804 (881)
T ss_pred hhhhhcccchhhhhhh
Confidence 9999988777776665
No 119
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.93 E-value=1.7e-09 Score=87.35 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.+.|||+|+.+.+|.++|..+|+.||.|..+.|+. .+++++||||+|.+.+.+..|+. |||..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 5678999999999999999999999999999888855 45789999999999999999999 9999999999999997
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 120
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.89 E-value=3.8e-09 Score=91.90 Aligned_cols=76 Identities=29% Similarity=0.562 Sum_probs=66.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
-.+|||.|||.++++++|.++|..||+|+...|.. .++...||||+|.+..+++.||. .+-..|+++.|.|+--..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 35599999999999999999999999999988832 24444899999999999999999 668899999999998654
No 121
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=5.1e-09 Score=82.06 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.-++|||+||++.+..+.|...|++||+|+.+.|+.|+++ ||+||.|.+.+.|..|++..| -.|+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG 80 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG 80 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccc
Confidence 3468999999999999999999999999999999998775 599999999999999998543 34566
No 122
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.88 E-value=1.3e-08 Score=66.75 Aligned_cols=71 Identities=27% Similarity=0.425 Sum_probs=50.2
Q ss_pred CeEEEcCCCCCCCHHHH----HHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 7 RTLYVGNLPGDTRMREV----EDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l----~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.|+|.|||.+.+...| .+|+..|| +|..| . .+.|+|.|.+++.|..|.+-|+|-.+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999999888775 67777785 77776 2 5799999999999999999999999999999999985
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 443
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.84 E-value=5e-09 Score=87.54 Aligned_cols=171 Identities=20% Similarity=0.240 Sum_probs=130.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCcEEEEEEc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~~ 80 (297)
..+++|++++..++.+.++..+|..+|.+..+.+.. ...++++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 468899999999999999999999999887776632 45679999999999999999999 555 4666766666665
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEc
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~ 155 (297)
....... .............+++ |.+|+..++.++|...|..+|.|..+.+...... ++++|.|.
T Consensus 166 ~~~~~~~----------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~ 235 (285)
T KOG4210|consen 166 TRRGLRP----------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFS 235 (285)
T ss_pred ccccccc----------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhh
Confidence 4333100 0001111223334455 9999999999999999999999999999987765 48999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeeccCCCC
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRRS 191 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~~ 191 (297)
+...+..++.. +...+.+ ..+.+++...+..
T Consensus 236 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 236 AGNSKKLALND-QTRSIGG----RPLRLEEDEPRPK 266 (285)
T ss_pred hchhHHHHhhc-ccCcccC----cccccccCCCCcc
Confidence 99999998887 7888887 6677777766643
No 124
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.82 E-value=1e-08 Score=89.79 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=72.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
..+||+|+|+.+++++|..+|...|.|..+.++.|..+ ||||++|.+.++|..|+..|||.++.| +.++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 79999999999999999999999999999999988765 599999999999999999999999999 8888888
Q ss_pred ccCCCC
Q 022425 186 YDSRRS 191 (297)
Q Consensus 186 ~~~~~~ 191 (297)
......
T Consensus 95 ~~~~~~ 100 (435)
T KOG0108|consen 95 ASNRKN 100 (435)
T ss_pred ccccch
Confidence 776643
No 125
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.80 E-value=3.6e-08 Score=83.10 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=67.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
..+|||+||+..+++++|.++|.+||.+..+.+..+.. .+||||+|.+.++|..|+..++|..+.| ..+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 68999999999999999999999999999999988752 3699999999999999999999999999 666666
Q ss_pred ecc
Q 022425 185 EYD 187 (297)
Q Consensus 185 ~~~ 187 (297)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 643
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=4.4e-08 Score=67.62 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=64.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccC----CcEEEE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~--G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v 77 (297)
+||.|.|||...|.++|.+++... |...-+.|+. ++-+.|||||-|.+++.|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999754 6777777755 3567899999999999999999999998885 567777
Q ss_pred EEcc
Q 022425 78 ELAH 81 (297)
Q Consensus 78 ~~~~ 81 (297)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 127
>smart00361 RRM_1 RNA recognition motif.
Probab=98.79 E-value=5.3e-08 Score=63.95 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHHHH----hcCCeeEEE-EEecC------CCcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 123 WQDLKDHMR----RAGDVCFSQ-VFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 123 ~~~l~~~f~----~~g~i~~~~-~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
+++|.++|. +||.|..+. +..+. ..|+|||+|.+.++|..|+..|||..+.|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456777777 999999985 55433 24699999999999999999999999999
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=3.8e-09 Score=88.31 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=54.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
+||+|++|+..|...++.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999999887743 2336688899999999999999 7787766
No 129
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=1.7e-08 Score=78.33 Aligned_cols=67 Identities=24% Similarity=0.385 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (297)
.....||||.||.+++||++|+.+|+.|--..-++|...+ ....|||+|++.+.|..||..|+|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHHhhccee
Confidence 3567899999999999999999999999776666665422 256899999999999999999999776
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.58 E-value=6.1e-08 Score=76.82 Aligned_cols=77 Identities=18% Similarity=0.350 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.-.||+|.|.-+++.+.|-..|.+|-.....++ ..+++++||+||.|.++.++..|+.+|||..++.++|++..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 3467999999999999999999999976666666 4478999999999999999999999999999999999987754
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=6.2e-08 Score=76.45 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
...+.|+|.||+..+.+.+|.++|.++|++....+. .+++||+|.++++|..|+..|+|..+.|+.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 456889999999999999999999999999555443 789999999999999999999999999999999
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.53 E-value=4.9e-07 Score=81.24 Aligned_cols=174 Identities=11% Similarity=-0.008 Sum_probs=122.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.+.+-+.+++.++.+.|++++|.-. .|..+.|.+ .+...|.++|+|..+.++++|++ -|.+.+-.+.|.|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45677788999999999999999643 466666643 23337899999999999999998 77778788888887754
Q ss_pred CCCCCCCCC----CC-------C-CCCCCC-----CC--CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEE
Q 022425 82 GGRRHSSSM----DR-------Y-SSYSSG-----GS--RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (297)
Q Consensus 82 ~~~~~~~~~----~~-------~-~~~~~~-----~~--~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~~ 141 (297)
...-..... .. . ...... +. ...+...+..|||.+||..++..++..+|.....|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 321110000 00 0 000000 01 1123456778999999999999999999999887777 666
Q ss_pred EecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 142 FRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 142 ~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
...+++ ..|||.|..++++..|+..-+...++. +.|+|+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 655443 589999999999988888666666655 666665
No 133
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=5.9e-07 Score=70.39 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEEecC-CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.+..+|||.||+..+..++|+. +|++||+|..|...... -.|.|||.|.+.+.|-.|+..|+|..+.| ..+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg----K~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG----KPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC----chh
Confidence 3444999999999999998887 99999999998888654 45799999999999999999999999999 555
Q ss_pred EEeeccC
Q 022425 182 RVREYDS 188 (297)
Q Consensus 182 ~v~~~~~ 188 (297)
++.++..
T Consensus 83 riqyA~s 89 (221)
T KOG4206|consen 83 RIQYAKS 89 (221)
T ss_pred heecccC
Confidence 5555543
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.49 E-value=4.2e-07 Score=79.93 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=68.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.+.+|+|.+|...+...+|+.+|.+||+|+-..|+.+... .|+||.|.+.++|.++|..||..++.| ..|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 4568999999999999999999999999999999887543 299999999999999999999999999 77777
Q ss_pred eeccC
Q 022425 184 REYDS 188 (297)
Q Consensus 184 ~~~~~ 188 (297)
+.++.
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 76654
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=2.8e-06 Score=71.38 Aligned_cols=158 Identities=19% Similarity=0.218 Sum_probs=106.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE---EEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD---IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+++..|-..+||+..++.+|-.||.-.--+.. +.+...+.--|.|.|.|.++|.-+-|++ -+...+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 45667778899999999999999975422211 1222234556899999999999999998 7778888999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhc---C-C---eeEEEEEecCCCcEEEEE
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA---G-D---VCFSQVFRDRGGMTGIVD 153 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~---g-~---i~~~~~~~~~~~~~~fv~ 153 (297)
.......-. +.................|-..+||++++..++.++|..- + . |.++.-..+..+|-|||.
T Consensus 137 ~ge~f~~ia----gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 137 TGEEFLKIA----GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred CchhheEec----CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 654322110 0000000111112234456678999999999999999632 2 2 223333334556899999
Q ss_pred EcCHHHHHHHHHH
Q 022425 154 YTSYDDMKYAIRK 166 (297)
Q Consensus 154 f~~~~~a~~a~~~ 166 (297)
|..+++|+.|+.+
T Consensus 213 fa~ee~aq~aL~k 225 (508)
T KOG1365|consen 213 FACEEDAQFALRK 225 (508)
T ss_pred ecCHHHHHHHHHH
Confidence 9999999999864
No 136
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.47 E-value=4.3e-07 Score=64.28 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=44.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc-----ccCCcEEEEEE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVEL 79 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~i~v~~ 79 (297)
+.|.|.+++..++-++|+++|..||.|..|.+... -..|||-|.+++.|+.|+..+.-. .|.+..+.+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999999752 458999999999999999766543 45555555554
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=1.1e-06 Score=71.03 Aligned_cols=71 Identities=25% Similarity=0.295 Sum_probs=64.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
.....|+|.||++.+...+|+++|..||.+..+.+..+..+ +.|-|.|...++|..|++.+||..++|...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~m 154 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPM 154 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCcee
Confidence 33478999999999999999999999999999999888776 699999999999999999999999999553
No 138
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.42 E-value=9.7e-07 Score=80.37 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
..++|+|++|+..+++.+|..+|+.||.|..|.++.+. ++|||.+....+|.+|+.+|++..+.+ ..|++.++-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~----k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVAD----KTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccc----eeeEEeeec
Confidence 56799999999999999999999999999999887765 499999999999999999999999988 666666655
Q ss_pred CC
Q 022425 188 SR 189 (297)
Q Consensus 188 ~~ 189 (297)
+.
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 44
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.40 E-value=3.9e-07 Score=72.36 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=110.5
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 8 TLYVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~-l--~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++++|+-..+..+- | ...|+.|-......+.. .+.-.+++|+.|.....-.++...-+++.++-.+|++--...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 345666666655555 3 56676666555555543 244578999999988888888776677766655544332221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYD 158 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~ 158 (297)
-.. . ....-...+..||.+.|...++.+.|-..|.+|-......++++.-+ ||+||.|.+..
T Consensus 178 wed-----P---------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 178 WED-----P---------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred cCC-----c---------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH
Confidence 100 0 01122456679999999999999999999999998888888887543 59999999999
Q ss_pred HHHHHHHHhcCCeecc
Q 022425 159 DMKYAIRKLDRSEFRN 174 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g 174 (297)
++..|+.+|+|..++.
T Consensus 244 d~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 244 DYVRAMREMNGKYVGS 259 (290)
T ss_pred HHHHHHHhhccccccc
Confidence 9999999999999988
No 140
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=71.97 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHH-hcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK-LDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~-l~g~~~~g~~~~~~i~v~ 184 (297)
...-.+|||++|...+++++|.++|.+||+|..+.+..... +|||+|.+.+.|+.|..+ +|...|+| ..|.+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEEEE
Confidence 34567899999999999999999999999999998887654 999999999999988775 46667788 778887
Q ss_pred eccC
Q 022425 185 EYDS 188 (297)
Q Consensus 185 ~~~~ 188 (297)
+..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 7655
No 141
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.40 E-value=2.9e-07 Score=76.82 Aligned_cols=81 Identities=28% Similarity=0.397 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEE---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--------~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
....+|||-+||..+++.+|.++|.+||.|+. |+| ++|+.+++-|.|.|.+...|+.|+..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34578999999999999999999999998753 333 4578899999999999999999999999999999
Q ss_pred cEEEEEEccCCC
Q 022425 73 YRLRVELAHGGR 84 (297)
Q Consensus 73 ~~i~v~~~~~~~ 84 (297)
.+|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999987544
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.34 E-value=2.7e-06 Score=70.58 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=69.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
.+..++.|||.|||..+|.+++.++|.+||.|.. |.+..+..+ |-|++.|...+....|++.|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456778999999999999999999999997754 777777664 57999999999999999999999999
Q ss_pred cceeeeEEEEeeccC
Q 022425 174 NAFSRSYVRVREYDS 188 (297)
Q Consensus 174 g~~~~~~i~v~~~~~ 188 (297)
| ..|+|+.++-
T Consensus 210 g----~~~rVerAkf 220 (382)
T KOG1548|consen 210 G----KKLRVERAKF 220 (382)
T ss_pred C----cEEEEehhhh
Confidence 9 8888886653
No 143
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.31 E-value=3.8e-06 Score=64.92 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=63.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
......++|..+|..+.+.++...|.++ |.+..+.+.++..+ |||||+|++.+.|+-|.+.||+..+.|+...+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455678999999999999999999998 56666767676544 599999999999999999999999999776554
Q ss_pred E
Q 022425 181 V 181 (297)
Q Consensus 181 i 181 (297)
+
T Consensus 126 v 126 (214)
T KOG4208|consen 126 V 126 (214)
T ss_pred E
Confidence 4
No 144
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.31 E-value=2.6e-07 Score=73.64 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=53.5
Q ss_pred HHHHHHHh-cCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 21 ~~l~~~F~-~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
++|...|+ +||+|+.+.|.. ..+..|.+||+|..+++|++|+..|||.+|.|++|.++++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 55666666 999999998843 235689999999999999999999999999999999999763
No 145
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.30 E-value=3.7e-07 Score=72.55 Aligned_cols=70 Identities=16% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-----------CCCC----cEEEEEEcChHHHHHHHHhcCCcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----------PRPP----GYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-----------~~~~----g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
.+-.||++|||+.+...-|++||+.||+|-.|.|... +... .-|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999999431 1111 237899999999999999999999
Q ss_pred cCCcE
Q 022425 70 FDGYR 74 (297)
Q Consensus 70 ~~g~~ 74 (297)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 146
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.29 E-value=1.8e-06 Score=71.27 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhcCCCeeEEEEec-C---CCCCcE--EEEEEcChHHHHHHHHhcCCcccCCc
Q 022425 6 SRTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-P---PRPPGY--AFLEFEDYRDAEDAIRGRDGYNFDGY 73 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l------~~~F~~~G~V~~~~~~~-~---~~~~g~--afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (297)
.+-|||-+||+.+..+++ .++|.+||+|..|.|.+ + ..-.+. .||.|...++|..||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999988777773 68999999999999843 2 111222 49999999999999999999999999
Q ss_pred EEEEEEcc
Q 022425 74 RLRVELAH 81 (297)
Q Consensus 74 ~i~v~~~~ 81 (297)
.|++.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998864
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=5e-07 Score=70.17 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.+....+|||.|+...++++.|.++|-+.|.|..+.|..+... .||||.|.+......|+.-|||..+.+..+..++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3556779999999999999999999999999999999876543 4999999999999999999999998885444433
No 148
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.23 E-value=3.3e-06 Score=51.72 Aligned_cols=53 Identities=32% Similarity=0.564 Sum_probs=44.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHH
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 62 (297)
++.|-|.+.++... ++|...|..||+|..+.+. ....++||+|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 36788999987755 5566699999999999886 23779999999999999985
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.19 E-value=1.6e-05 Score=69.57 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe----cCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR----DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
....|||.|||.+++..+|+++|.+||.|....|.. +....||||+|.+..+++.|+..- -..+++ +.+.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEE
Confidence 344599999999999999999999999999966554 333369999999999999999954 667777 88888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
++.+..
T Consensus 362 eek~~~ 367 (419)
T KOG0116|consen 362 EEKRPG 367 (419)
T ss_pred Eecccc
Confidence 887665
No 150
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.18 E-value=9.4e-06 Score=56.52 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE-ec---------CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL-KI---------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~-~~---------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (297)
...+-|.|-+.|+. ....|.+.|++||.|.+..- .. .....++..|.|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 35678999999987 77888999999999988751 00 11337899999999999999999 999999886
Q ss_pred EE-EEEEcc
Q 022425 74 RL-RVELAH 81 (297)
Q Consensus 74 ~i-~v~~~~ 81 (297)
.| -|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 44 466653
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.14 E-value=9.6e-06 Score=73.39 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-------CcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 101 SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 101 ~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
......+..++|||+||++.++++.|...|+.||.|..+.++.... ..++||.|.+..+|+.|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 3444466788999999999999999999999999999999987643 239999999999999999999999998
Q ss_pred cceeeeEEEEeec
Q 022425 174 NAFSRSYVRVREY 186 (297)
Q Consensus 174 g~~~~~~i~v~~~ 186 (297)
+ ..+++-+.
T Consensus 246 ~----~e~K~gWg 254 (877)
T KOG0151|consen 246 E----YEMKLGWG 254 (877)
T ss_pred e----eeeeeccc
Confidence 8 44444443
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.11 E-value=3.1e-05 Score=51.08 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=46.2
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 110 YRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
..|+|.|||...+... |++++..|| +|..+. ++.|+|.|.+++.|..|.+.|+|..+.| ..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 4789999999988664 566677776 665552 3489999999999999999999999999 778877
Q ss_pred eccC
Q 022425 185 EYDS 188 (297)
Q Consensus 185 ~~~~ 188 (297)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 6643
No 153
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.10 E-value=2.6e-06 Score=75.45 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCccc---CCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~v~~ 79 (297)
..++.|+|.||-.-+|.-+|++|+. .+|.|..+||-. -+..|||.|.+.++|.+...+|||..+ +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 4689999999999999999999999 778898887721 177899999999999999999999887 478888888
Q ss_pred ccC
Q 022425 80 AHG 82 (297)
Q Consensus 80 ~~~ 82 (297)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 763
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.08 E-value=2.9e-06 Score=71.15 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCCCeEE-EcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~-V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
.+..++| |+||+.++++++|+.+|..+|.|..+.+.. ++..++||||.|.....+..|+.. +...+++.++.|+.
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3455666 999999999999999999999999999954 577899999999999999999986 88999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
..+...
T Consensus 261 ~~~~~~ 266 (285)
T KOG4210|consen 261 DEPRPK 266 (285)
T ss_pred CCCCcc
Confidence 876543
No 155
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=72.74 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCee-EEEE--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~-~~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
+.|-+.|+|++++.+||.++|.-|-.+- +|.+ ..+|...|-|.|.|++.++|..|+..|++..|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999996553 3444 34678899999999999999999999999999999998875
No 156
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.07 E-value=5.6e-05 Score=52.32 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=56.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
++|.|.|+|...+.++|.+++... |....+.++.|.. -|||||.|.+++.|..-.+.++|..+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 689999999999999999988763 6677777776643 4799999999999999999999999875
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.7e-05 Score=69.97 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCCHH-------HHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEE
Q 022425 6 SRTLYVGNLPGDTRMR-------EVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRL 75 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~-------~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i 75 (297)
...|+|.|+|-- -++ -|..+|+++|+|..+.++. .+..+||+|++|++..+|+.|++.|||..|+ .+++
T Consensus 58 D~vVvv~g~PvV-~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVV-GPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCccc-ChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467899999853 222 3578899999999999975 4567999999999999999999999998886 7788
Q ss_pred EEEEccC
Q 022425 76 RVELAHG 82 (297)
Q Consensus 76 ~v~~~~~ 82 (297)
.|...+.
T Consensus 137 ~v~~f~d 143 (698)
T KOG2314|consen 137 FVRLFKD 143 (698)
T ss_pred Eeehhhh
Confidence 8877664
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=1.3e-05 Score=56.71 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=40.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCC
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 170 (297)
++.|+|.+++..++.++|+++|.+||.|.+|++..... .|+|.|.+.+.|+.|+..+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 35789999999999999999999999999998887655 7999999999999999877555
No 159
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=1.3e-05 Score=70.71 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
.....+|+|.|||..++.++|..+|+.||+|..+..-... .+.+||+|.+..+|++|++.|++.+|.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999985444333 34899999999999999999999999984
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.94 E-value=7.2e-06 Score=69.98 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCC--------C--------CCcEEEEEEcChHHHHHHHHhcC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--------R--------PPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~--------~--------~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
+-++++|.+.|||.+-.-+-|.+||+.||.|+.|.|...+ . .+-+|||+|.+.+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3578999999999998889999999999999999995531 1 14579999999999999999776
Q ss_pred CcccCCcEEEEE
Q 022425 67 GYNFDGYRLRVE 78 (297)
Q Consensus 67 g~~~~g~~i~v~ 78 (297)
.....-.-|+|.
T Consensus 308 ~e~~wr~glkvk 319 (484)
T KOG1855|consen 308 PEQNWRMGLKVK 319 (484)
T ss_pred hhhhhhhcchhh
Confidence 644433333333
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.90 E-value=6.5e-05 Score=55.50 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 22 EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 22 ~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
+|.+.|..||+|.-+++. .+.-+|.|.+-+.|.+|+. |+|..|.|+.|+|.+..+
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 678899999999999888 4578999999999999999 999999999999999653
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.90 E-value=1.1e-05 Score=67.03 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G--~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.-.+|||||-+.+|++||.+.+...| .|.++++.+ .|.++|||+|...+....++.|+.|....|.|+.-.|-..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 35689999999999999999998887 555666633 5789999999999999999999999999999986666554
Q ss_pred c
Q 022425 81 H 81 (297)
Q Consensus 81 ~ 81 (297)
+
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 4
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=8.1e-05 Score=65.31 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=55.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-cCCCeeEEEEecC---CCCCcEEEEEEcChHHHHHHHH
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~ 63 (297)
++.+|||||+||.-+|.++|..||+ -||.|..+-|=.+ +-++|-|-|.|.+...-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 6889999999999999999999999 8999999998544 4578999999999999999997
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.00013 Score=44.63 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHH
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 164 (297)
+.|-|.|.++...+. +...|..||+|..+.+....+ ..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 467888988776655 445888999999988883333 8999999999999985
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.70 E-value=0.00011 Score=59.91 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCeeEEEEecC----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 20 MREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 20 ~~~l~~~F~~~G~V~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
++++.+..++||.|..|.|... .+..--.||+|...++|.+|+-.|||.+|+|+.+...|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567888999999999988542 1234568999999999999999999999999999888754
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.00016 Score=57.98 Aligned_cols=103 Identities=27% Similarity=0.236 Sum_probs=83.2
Q ss_pred HHHHHHHhcCCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe
Q 022425 57 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (297)
Q Consensus 57 ~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i 136 (297)
-|..|-..|++....|+.|.|.|+.. ..|+|.||...+..+.|.+.|..||.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 35566667999999999999999864 379999999999999999999999999
Q ss_pred eEEEEEecC---CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 137 CFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 137 ~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
....+..+. .++-++|+|.....|.+|+..++-.-+.+.......-|+..
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 886655543 34589999999999999999987777766555555555543
No 167
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.62 E-value=9.2e-05 Score=60.12 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=64.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
......++|+|+...++.++++..|..||.+..+.+..+... +|+||+|.+.+.++.|+. |||..+.| ..|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~----~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG----PAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc----ccc
Confidence 345668999999999999999999999999988777766543 599999999999999999 99999999 455
Q ss_pred EEeec
Q 022425 182 RVREY 186 (297)
Q Consensus 182 ~v~~~ 186 (297)
.+...
T Consensus 173 ~vt~~ 177 (231)
T KOG4209|consen 173 EVTLK 177 (231)
T ss_pred eeeee
Confidence 54443
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.56 E-value=0.00013 Score=68.15 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~~~ 81 (297)
.+++.|||++|.+.+....|...|..||.|..|.+-. ...||||+|++...|+.|++.|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 5788999999999999999999999999999998863 37899999999999999999999999974 789999988
Q ss_pred CCCCCC
Q 022425 82 GGRRHS 87 (297)
Q Consensus 82 ~~~~~~ 87 (297)
...+.+
T Consensus 530 ~~~~~P 535 (975)
T KOG0112|consen 530 PPGATP 535 (975)
T ss_pred CCCCCh
Confidence 655443
No 169
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.50 E-value=0.00065 Score=44.88 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
...+|+ +|..+...||.++|+.||.|.--+|- -.-|||...+.+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhcc
Confidence 445565 99999999999999999998766665 34799999999999999987753
No 170
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.46 E-value=0.001 Score=48.58 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=59.0
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~----~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
+.+..||.|.=|..++.. ..|...++.||+|..|.+.- +..|.|.|.+..+|.+|+.+++. -..|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 456778999877666433 34677788999999998863 77899999999999999998876 6678888888
Q ss_pred Ecc
Q 022425 79 LAH 81 (297)
Q Consensus 79 ~~~ 81 (297)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 171
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.37 E-value=0.0018 Score=46.05 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=50.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEecCCCCCc-EEEEEEcChHHHHHHHHhcCCcccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~-G~V~~~~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
..+..+.+...|+.++.++|..+.+.+ ..|..+.|..++.+-. .++|+|.+.++|......+||+.|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455555556666667777666655 4677888888776444 5888999999999999999998885
No 172
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.37 E-value=0.00036 Score=58.68 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=59.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
.....+|||.+|+..++..+|.++|.++|.|.. |+|.++.. ++-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 456779999999999999999999999997743 55555544 358999999999999999999999999
Q ss_pred cc
Q 022425 174 NA 175 (297)
Q Consensus 174 g~ 175 (297)
+.
T Consensus 143 gn 144 (351)
T KOG1995|consen 143 GN 144 (351)
T ss_pred CC
Confidence 93
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.31 E-value=0.0017 Score=45.30 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-E----------EecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~-~----------~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
....|.|-|.|+. ....|.+.|++||.|.... + .....+....|.|.+..+|.+||. .||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899888 5667889999999998764 0 111223389999999999999999 8999998864
Q ss_pred e
Q 022425 177 S 177 (297)
Q Consensus 177 ~ 177 (297)
.
T Consensus 83 m 83 (100)
T PF05172_consen 83 M 83 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.26 E-value=0.0002 Score=57.39 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=59.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---------c-------EEEEEEcCHHHHHHHHHHhcCCe
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---------~-------~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
....||+.+||+.+....|.++|..||.|-.|.+...... + -|+|+|.....|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998754321 1 48999999999999999999999
Q ss_pred eccc
Q 022425 172 FRNA 175 (297)
Q Consensus 172 ~~g~ 175 (297)
|+|.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9994
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.24 E-value=0.00057 Score=58.73 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CC--------------CcEEEEEEcCHHHHHHHHHH
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RG--------------GMTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~--------------~~~~fv~f~~~~~a~~a~~~ 166 (297)
.+..+..+|.+.|||.+-..+.|.++|..+|.|..|.|.+. ++ ..+|+|+|++.+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34467889999999999999999999999999999999876 22 12799999999999999998
Q ss_pred hcCC
Q 022425 167 LDRS 170 (297)
Q Consensus 167 l~g~ 170 (297)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8554
No 176
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.00038 Score=64.72 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe--cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
...|||.|+|+..|.++|..+|..+|.+.++.++ ..|+++|-|||.|.++.+|..++...++..+.-..+.|..+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 3578999999999999999999999999999874 36889999999999999999999988888888888888887764
Q ss_pred CCC
Q 022425 84 RRH 86 (297)
Q Consensus 84 ~~~ 86 (297)
...
T Consensus 816 ~~K 818 (881)
T KOG0128|consen 816 RDK 818 (881)
T ss_pred ccc
Confidence 433
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0019 Score=57.50 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=56.1
Q ss_pred CCCceEEEeCCCCCCC------HHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 107 RSDYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~------~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.....|+|.|+|-.-. ...|..+|+++|+++++.++.+..+ ||.|++|.++.+|+.|++.|||..++.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4556888888875432 3356778999999999999977655 599999999999999999999999986
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.14 E-value=0.00077 Score=54.20 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHH-hcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 125 DLKDHMR-RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 125 ~l~~~f~-~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
+|...|. +||+|..+.|-.+-. -|-++|.|...++|+.|+..|||..+.|..+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi 140 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPI 140 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcc
Confidence 4444445 899999987766533 2579999999999999999999999999443
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.06 E-value=0.0023 Score=52.36 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCCc-----EEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 123 WQDLKDHMRRAGDVCFSQVFRDRGGM-----TGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 123 ~~~l~~~f~~~g~i~~~~~~~~~~~~-----~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
++++++.|.+||+|.+|.|+..++.. -.||+|...+.|.+|+-.|||..|+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 55788899999999999988776532 5899999999999999999999999943
No 180
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.03 E-value=0.0023 Score=53.41 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHH------HHHHHHhcCCeeEEEEEecCCC-----c-E-EEEEEcCHHHHHHHHHHhcC
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDRGG-----M-T-GIVDYTSYDDMKYAIRKLDR 169 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~-----~-~-~fv~f~~~~~a~~a~~~l~g 169 (297)
+.......-+||-+|++.+..++ -.++|.+||+|..|.|.+.... + + .||.|.+.++|..+|.+.+|
T Consensus 108 niRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 108 NIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred cceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 34456677899999999886655 3578999999999888765311 1 2 48999999999999999999
Q ss_pred Ceecccee
Q 022425 170 SEFRNAFS 177 (297)
Q Consensus 170 ~~~~g~~~ 177 (297)
..++|...
T Consensus 188 s~~DGr~l 195 (480)
T COG5175 188 SLLDGRVL 195 (480)
T ss_pred ccccCceE
Confidence 99999443
No 181
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.80 E-value=0.0092 Score=39.34 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=40.9
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhcCC-----CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 8 ~l~V~nL-~~~~t~~~l~~~F~~~G-----~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+|||.-= -..+++.+|..+|...+ .|-.|.|. ..|+||+.... .|..++..|++..+.|++|.|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555321 24589999999998775 55667776 67999998765 788899999999999999999875
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.79 E-value=0.0017 Score=50.63 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCe---eEEEEecC-----CCCCcEEEEEEcChHHHHHHHHhcCCcccCC-
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPI---VDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG- 72 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~V---~~~~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 72 (297)
+.....|.|.+||+++|++++.+.+.. ++.- ..+..... ..--.-|||.|.+.+++...+..++|..|-+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356679999999999999999997776 6655 23331111 1124579999999999999999999977642
Q ss_pred ----cEEEEEEccCC
Q 022425 73 ----YRLRVELAHGG 83 (297)
Q Consensus 73 ----~~i~v~~~~~~ 83 (297)
..-.|++|...
T Consensus 84 kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQ 98 (176)
T ss_dssp TS-EEEEEEEE-SS-
T ss_pred CCCCcceeEEEcchh
Confidence 25567776653
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.0023 Score=56.89 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=57.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh--cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFY--KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~--~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ 79 (297)
..-|.|+|.-||.++-+|+|+.||. .|-++++|.+.. -..=||.|++..||+.|++.|.. +.|-|++|...+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~----N~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH----NDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee----cCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3457889999999999999999997 478999999954 22459999999999999977655 556677666555
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.63 E-value=0.0096 Score=46.61 Aligned_cols=64 Identities=28% Similarity=0.349 Sum_probs=47.4
Q ss_pred CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCcEEEEEEccCCC
Q 022425 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~~~~~~ 84 (297)
-..+.|.++|..|+.+..+.++. +-+-..|.|.+.++|..|...|+ +..+.|..|.|.++....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35688999999999998888763 24668999999999999999999 999999999999985443
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.48 E-value=0.023 Score=35.64 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (297)
..|+|.++. +++.++|+.+|..| .....|..+.+ .-|=|.|.+++.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 578999985 69999999999998 12345555543 24789999999999999865
No 186
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.48 E-value=0.0015 Score=59.29 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+.-+|||+||...+..+-+..+...||-|..+.... |+|+.|....-+..|+..|+-..++|..|.+..-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 567899999999999999999999999999887753 9999999999999999999999999998887774
No 187
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.012 Score=48.59 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-EEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~~~~ 82 (297)
..=|-|.++|+. .-..|..+|++||+|+..... ....|-+|.|.+.-+|++||. -||+.|+|. -|-|..+..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 456778888775 456788999999999887554 336799999999999999999 899999875 445666544
No 188
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.42 E-value=0.0021 Score=56.09 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.+.+.|-+-.+|.. -|..+|...|.+||+|..|.+-.. .-.|.|+|.+.-+|-.|.. .++..|+++.|+|.|-++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34555666666655 467889999999999999988432 4679999999999988888 899999999999999886
Q ss_pred CC
Q 022425 83 GR 84 (297)
Q Consensus 83 ~~ 84 (297)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.42 E-value=0.01 Score=51.70 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-CCeeEEEEecCCCCCc-EEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~-G~V~~~~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
+++.|+|--+|..+|.-||..|...| -.|.+|.|+.++.+-. .++|+|.+..+|...++.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998866 4788999988876554 48899999999999999999988863
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.32 E-value=0.0014 Score=54.95 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHH---HHHHhcCCCeeEEEEecCC------CCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 7 RTLYVGNLPGDTRMREV---EDLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l---~~~F~~~G~V~~~~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
+-+||-+|+..+..+.+ .+.|.+||.|..|.+..+. ..---+||.|...++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45678888877655555 4678899999999885422 11123899999999999999999999999999877
Q ss_pred EEcc
Q 022425 78 ELAH 81 (297)
Q Consensus 78 ~~~~ 81 (297)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 7754
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.027 Score=50.46 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=67.5
Q ss_pred ChHHHHHHHHhcCCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHh-
Q 022425 54 DYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR- 132 (297)
Q Consensus 54 ~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~- 132 (297)
+.+-...+|....+..++.+-++|.. ....+.|++..|+.....++++.+|+.
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp--------------------------~~kRcIvilREIpettp~e~Vk~lf~~e 199 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRP--------------------------NHKRCIVILREIPETTPIEVVKALFKGE 199 (684)
T ss_pred chHHHHHHHhcCCCceeccCcccccc--------------------------CcceeEEEEeecCCCChHHHHHHHhccC
Confidence 44555667777777777776666655 344578999999999999999999985
Q ss_pred -cCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHh
Q 022425 133 -AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 133 -~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 167 (297)
|-+++.|.+..+.+ =||.|++..||+.|.+.|
T Consensus 200 ncPk~iscefa~N~n---WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 200 NCPKVISCEFAHNDN---WYITFESDTDAQQAYKYL 232 (684)
T ss_pred CCCCceeeeeeecCc---eEEEeecchhHHHHHHHH
Confidence 67888888887764 589999999999998765
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.19 E-value=0.18 Score=41.80 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=98.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCC----------CCCcEEEEEEcChHHHHHHHH----hcCC--c
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAIR----GRDG--Y 68 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~----------~~~g~afV~f~~~~~A~~A~~----~l~g--~ 68 (297)
-++.|.+.|+...++--.+...|-+||+|+.|.|.... +...-+.+.|.+.+.|..... .|+. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999996532 335678999999999875432 2222 4
Q ss_pred ccCCcEEEEEEccCCCCCCC-CCCCCCCCC----CCCC-CCCCCCCCceEEEeCCCCCCCHHH-HHHHH---HhcC----
Q 022425 69 NFDGYRLRVELAHGGRRHSS-SMDRYSSYS----SGGS-RGVSRRSDYRVLVTGLPSSASWQD-LKDHM---RRAG---- 134 (297)
Q Consensus 69 ~~~g~~i~v~~~~~~~~~~~-~~~~~~~~~----~~~~-~~~~~~~~~~l~V~~l~~~~~~~~-l~~~f---~~~g---- 134 (297)
.+.-..|.|.+..-.-.... ..+....+. .... .-........|.|.=- ..+..++ +.+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 45567777777652111100 011111110 0001 1122334455666533 3333333 33222 2223
Q ss_pred CeeEEEEEecC------CCcEEEEEEcCHHHHHHHHHHhcCC
Q 022425 135 DVCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLDRS 170 (297)
Q Consensus 135 ~i~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~ 170 (297)
-++.|+++... +..||.+.|-+...|.+.++.|...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 24446665432 2249999999999999999987643
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.16 E-value=0.028 Score=37.31 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=42.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 169 (297)
....+|+ +|..+...+|.++|..||.|.--.|... .|||.....+.|..|+..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 3455555 9999999999999999999865544333 799999999999999998864
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.09 E-value=0.051 Score=40.41 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 124 ~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.+|.+.|..||++.-+.+..+ .-+|.|.+-+.|.+|+. ++|.+++|....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 367888999999998888776 58999999999999998 999999994433
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.05 E-value=0.065 Score=33.66 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=43.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHh
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 167 (297)
..|+|.|+. .++.++|+.+|..| .....|..+.+. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 478999984 58889999999998 234456666665 5889999999999999764
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.95 E-value=0.0086 Score=48.29 Aligned_cols=75 Identities=28% Similarity=0.366 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCccc----CCcEEEEEEc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF----DGYRLRVELA 80 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~i~v~~~ 80 (297)
..|||.||+.-+.-+.|.+-|..||+|..-.++. .++..+-++|+|...-.|.+|+..++-.-| .+.+..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998765544 356778899999999999999987743333 3555555554
Q ss_pred c
Q 022425 81 H 81 (297)
Q Consensus 81 ~ 81 (297)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.64 E-value=0.0098 Score=55.69 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=62.4
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEEccCCCCCC
Q 022425 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHS 87 (297)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~~~~~~~ 87 (297)
++-|.+-+.+-.-|..+|..||.|.+.+...+ -..|.|+|...+.|..|+..|+|+++. |-+.+|.+++......
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 34455556788889999999999999998643 568999999999999999999998774 8899999998665543
No 198
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.63 E-value=0.0087 Score=53.85 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=53.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
....+.|+|.||--.++..+|+.++.. +|.|...+|-+. ...|||.|.+.++|...+..|||..+-
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI--KSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh--hcceeEecccHHHHHHHHHHHhccccC
Confidence 346778999999999999999999995 556655543333 237999999999999999999998774
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.55 E-value=0.029 Score=38.04 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=49.8
Q ss_pred EEEEEcChHHHHHHHHhcCC--cccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 022425 48 AFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (297)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~ 125 (297)
|+|.|.+++-|+..+. +.. ..+++..+.|............ -..-......+|.|.|||..+.++.
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k-----------~qv~~~vs~rtVlvsgip~~l~ee~ 68 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK-----------FQVFSGVSKRTVLVSGIPDVLDEEE 68 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE-----------EEEEEcccCCEEEEeCCCCCCChhh
Confidence 7899999999999987 433 3345666666554322211100 0001123556899999999999999
Q ss_pred HHHHHHhcCCeeEEEEEecCCC
Q 022425 126 LKDHMRRAGDVCFSQVFRDRGG 147 (297)
Q Consensus 126 l~~~f~~~g~i~~~~~~~~~~~ 147 (297)
|++.+. +++.+..++
T Consensus 69 l~D~Le-------IhFqK~snG 83 (88)
T PF07292_consen 69 LRDKLE-------IHFQKPSNG 83 (88)
T ss_pred heeeEE-------EEEecCCCC
Confidence 876543 555555444
No 200
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.087 Score=47.54 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEecC-------------CC-------------C--------
Q 022425 4 RSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------PR-------------P-------- 44 (297)
Q Consensus 4 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~----G~V~~~~~~~~-------------~~-------------~-------- 44 (297)
..++.|-|.||.+. |...+|.-+|+.| |.|+.|.|..+ |. +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 56889999999986 9999999999977 58999988221 11 0
Q ss_pred ----------------CcEEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEEccCC
Q 022425 45 ----------------PGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGG 83 (297)
Q Consensus 45 ----------------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~~~ 83 (297)
-=||.|+|.+.+.|.+.+..|+|..|. +..|-+.|....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 127999999999999999999999997 556666665433
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.90 E-value=0.15 Score=32.57 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 17 ~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
.++-++|+..+..|+- ..|..-. .|| ||.|.+.++|++++...+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4889999999999963 3333322 444 89999999999999999999998877765
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.87 E-value=0.052 Score=47.72 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 110 YRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 110 ~~l~V~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
+.|.+.-.+..+ +..+|...|.+||+|.+|.+-... .-|.|.|.+..+|-.|.. .++..|++ +.|++.+...
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnn----r~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNN----RFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecC----ceeEEEEecC
Confidence 344444445544 577899999999999998887662 268999999999877665 78888888 6677666554
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.21 Score=41.49 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=51.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
...|-|-++++... ..|..+|.+||+|++.... .++.+-+|.|....+|.+||. .||+.|+|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 56777888876544 4577899999999876665 444499999999999999999 799999985
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.41 E-value=0.079 Score=41.37 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHh-cCCe---eEEEEEecCCC------cEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
....+|.|.+||+.++++++++.+.. ++.. ..+.-...... .-|||.|.+.+++...++.++|..+-+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999997776 6655 22221122111 26999999999999999999998886633
Q ss_pred ee-eEEEEeecc
Q 022425 177 SR-SYVRVREYD 187 (297)
Q Consensus 177 ~~-~~i~v~~~~ 187 (297)
+. ....|+.+-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 32 333344443
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.05 E-value=0.78 Score=32.68 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC--cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.+.+...|..++.+.|..+...+- .|..+.+.++... -.+.++|.+.+.|.+-...+||+.+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455556666766655554 5556777776543 268999999999999999999999875
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.97 E-value=0.069 Score=40.59 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=81.0
Q ss_pred eEEEcCCC--CCCCHHHHHHHHhc-CCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 8 TLYVGNLP--GDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 8 ~l~V~nL~--~~~t~~~l~~~F~~-~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
...||.+. ..++-..|.+.+.. ++....+.+..- ..++..++|.+++++..++. .....++|..|.++...+..
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~ 93 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDF 93 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccc
Confidence 34555552 34667777777764 344444555321 26899999999999999987 55566778888877766432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecC
Q 022425 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (297)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 145 (297)
.... ........-|.|.|||.. .+++.|..+.+.+|++..++.....
T Consensus 94 ~~~~--------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 94 NPSE--------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc--------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 2111 001123446788899987 4778889999999999988776554
No 207
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.90 E-value=0.0022 Score=55.13 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
++.|.|.|||+..-.+-|-.|+..||.|..|....+....-..-|+|...+.+.-||+.|||..+....++|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 46688999999999999999999999999998865543344555789999999999999999999999999988653
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.57 E-value=0.8 Score=33.86 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCCCceEEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 106 RRSDYRVLVTGLPSSA----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
..+..+|.|.-|..++ +...+-+.+..||.|..+.+.... .|.|.|.+...|..|+.+++...
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 4556788887766655 344566667899999998876544 69999999999999999988743
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.35 E-value=0.72 Score=40.66 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=57.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC--cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
...|.|-.+|..++..+|..++..+- .|..+.++++... -.++|.|.+.++|......+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999998765 6777888886443 378999999999999999999999875
No 210
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=92.17 E-value=0.33 Score=40.94 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=13.2
Q ss_pred CcEEEEEEcChHHHHHHHH
Q 022425 45 PGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~ 63 (297)
..-.||-|..+.-|..++-
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 4567788877777766665
No 211
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.04 E-value=0.11 Score=47.53 Aligned_cols=7 Identities=86% Similarity=1.037 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 022425 227 RSRSYSP 233 (297)
Q Consensus 227 r~rsrs~ 233 (297)
++|++||
T Consensus 750 rsRsrSp 756 (878)
T KOG1847|consen 750 RSRSRSP 756 (878)
T ss_pred ccccCCc
Confidence 3334444
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.71 E-value=1.4 Score=28.88 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHhcC-----CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 118 PSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 118 ~~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
...++..+|..++...+ .|-.+.+..+ |+||+-... .|..++..|++..+.| ..+.++
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~g----k~v~ve 72 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKG----KKVRVE 72 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS--------EE
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCC----eeEEEE
Confidence 34678888988888765 4445666666 888887655 7889999999999999 555554
No 213
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.29 E-value=0.23 Score=42.05 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
....+||+||-+-++.++|.+.+...| .+.+++++.+.. +|||+|...+....++.++.|-.+.|.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 456799999999999999998887766 344455554433 3699999999999999999999999988
No 214
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.09 E-value=0.14 Score=41.93 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=51.9
Q ss_pred CceEEEeCCCCC------------CCHHHHHHHHHhcCCeeEEEEEecC---------CC-----c---------EEEEE
Q 022425 109 DYRVLVTGLPSS------------ASWQDLKDHMRRAGDVCFSQVFRDR---------GG-----M---------TGIVD 153 (297)
Q Consensus 109 ~~~l~V~~l~~~------------~~~~~l~~~f~~~g~i~~~~~~~~~---------~~-----~---------~~fv~ 153 (297)
..+|++.+||-. .+++.|...|..||.|.+++|+.-. .. + -|||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 346777777653 3577899999999999998876321 11 1 25667
Q ss_pred EcCHHHHHHHHHHhcCCeecc----ceeeeEEEEeecc
Q 022425 154 YTSYDDMKYAIRKLDRSEFRN----AFSRSYVRVREYD 187 (297)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g----~~~~~~i~v~~~~ 187 (297)
|-.......|++.|.|..+.- .+-...+.|+.++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDR 266 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccch
Confidence 777777788888888887643 2223344555443
No 215
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=90.81 E-value=0.26 Score=37.84 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCC--CH---HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-EEEEEEc
Q 022425 7 RTLYVGNLPGDT--RM---REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELA 80 (297)
Q Consensus 7 ~~l~V~nL~~~~--t~---~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~~ 80 (297)
++|++.+|+..+ +. .....+|-+|-+...+.+.. +.++.-|-|.+++.|..|...+++..|.|+ .+++.++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 557888887652 22 23466777777766666653 367788999999999999999999999988 9999998
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
...-..
T Consensus 88 Q~~~~~ 93 (193)
T KOG4019|consen 88 QPGHPE 93 (193)
T ss_pred cCCCcc
Confidence 865443
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.24 E-value=0.48 Score=43.74 Aligned_cols=68 Identities=15% Similarity=0.016 Sum_probs=58.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
.+..+..++||+|+...+..+-+..+...+|.|..+.... |||..|..+..+..|+..++...++|..
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 3456778999999999999999999999999887765544 8999999999999999999988888743
No 217
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=90.06 E-value=6 Score=32.88 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=15.8
Q ss_pred EEEEEcChHHHHHHHHhcCC-cccCCcEEEEEE
Q 022425 48 AFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVEL 79 (297)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~ 79 (297)
-+|-|++...++-.+..|.- ..++-+.|.|.+
T Consensus 55 eilgfEDdVViefvynqLee~k~ldpkkmQiNl 87 (354)
T KOG2146|consen 55 EILGFEDDVVIEFVYNQLEEAKNLDPKKMQINL 87 (354)
T ss_pred HhhccccchhHHHHHHHHhhhcCCCchheeeee
Confidence 34556666555555554444 334444444433
No 218
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.69 E-value=0.19 Score=42.45 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCC-----C--cEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-----G--MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~-----~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
+....-+||-+|+..+..+.+. +.|.+||.|..+.+..+.. + --++|.|+..++|..||...+|..++|.
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 3455667888888777544443 3588999999998888652 1 1589999999999999999999999985
Q ss_pred e
Q 022425 176 F 176 (297)
Q Consensus 176 ~ 176 (297)
.
T Consensus 154 ~ 154 (327)
T KOG2068|consen 154 A 154 (327)
T ss_pred h
Confidence 4
No 219
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=89.39 E-value=0.77 Score=38.85 Aligned_cols=8 Identities=0% Similarity=0.252 Sum_probs=3.2
Q ss_pred CHHHHHHH
Q 022425 122 SWQDLKDH 129 (297)
Q Consensus 122 ~~~~l~~~ 129 (297)
+..+|.++
T Consensus 214 ~k~eid~i 221 (367)
T KOG0835|consen 214 TKREIDEI 221 (367)
T ss_pred cHHHHHHH
Confidence 34444443
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=88.71 E-value=2.2 Score=28.69 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=43.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (297)
.-|+-..+..++..+|.+.++. || +|..|..........=|||.+...+.|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3455557789999999999986 55 7777777655444567999999999988865433
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.47 E-value=0.75 Score=39.85 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
.+.|=|.++|.....+||...|+.|++ ..|+|++-. ...||-.|.....|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 367889999999999999999999975 444454311 3579999999999999998
No 222
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=87.91 E-value=0.18 Score=41.31 Aligned_cols=65 Identities=20% Similarity=0.484 Sum_probs=46.7
Q ss_pred CCeEEEcCCCCC------------CCHHHHHHHHhcCCCeeEEEEec--------CCC-----CCcE---------EEEE
Q 022425 6 SRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPR-----PPGY---------AFLE 51 (297)
Q Consensus 6 ~~~l~V~nL~~~------------~t~~~l~~~F~~~G~V~~~~~~~--------~~~-----~~g~---------afV~ 51 (297)
..||++.+||-. -+++-|...|+.||.|..|.|+. +++ ..|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888743 36778999999999999999843 222 1333 4577
Q ss_pred EcChHHHHHHHHhcCCccc
Q 022425 52 FEDYRDAEDAIRGRDGYNF 70 (297)
Q Consensus 52 f~~~~~A~~A~~~l~g~~~ 70 (297)
|.....-..||..|-|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 7777777788888888655
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=87.67 E-value=3.1 Score=27.49 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=42.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
.-|+-.++..++..+|++.++. || +|..|..+.......=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566668889999999999986 55 67777665544445679999999888877544
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=87.40 E-value=0.51 Score=34.04 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHH-HHHHH
Q 022425 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA-EDAIR 63 (297)
Q Consensus 8 ~l~V~nL~~~---------~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A-~~A~~ 63 (297)
+++|-|++.. ++.++|.+.|..|.+++-..+.......++++|+|...-.. ..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4667788543 46788999999998876555543445589999999865443 34554
No 225
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.22 E-value=2.8 Score=32.96 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc--CCeeccce
Q 022425 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAF 176 (297)
Q Consensus 122 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~ 176 (297)
....|+++|..++.+........-. -..|.|.+.++|..|...|+ +..+.|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 4678999999999887766665533 58899999999999999999 99999943
No 226
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.45 E-value=0.39 Score=45.54 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 118 PSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 118 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
+-..+-..|..+|.+||.|..++..++-+ .|.|+|...+.|..|++.|+|+++.-
T Consensus 307 ~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~ 361 (1007)
T KOG4574|consen 307 AVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV 361 (1007)
T ss_pred cccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc
Confidence 33455667889999999999999988776 79999999999999999999998753
No 227
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.35 E-value=0.51 Score=39.78 Aligned_cols=8 Identities=0% Similarity=0.451 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 022425 125 DLKDHMRR 132 (297)
Q Consensus 125 ~l~~~f~~ 132 (297)
+|.+.|++
T Consensus 228 qId~~ie~ 235 (453)
T KOG2888|consen 228 QIDEKIEE 235 (453)
T ss_pred HHHHHHHh
Confidence 34444443
No 228
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=84.43 E-value=0.47 Score=39.97 Aligned_cols=12 Identities=25% Similarity=0.042 Sum_probs=5.5
Q ss_pred CHHHHHHHHHhc
Q 022425 122 SWQDLKDHMRRA 133 (297)
Q Consensus 122 ~~~~l~~~f~~~ 133 (297)
...+|+..|+.|
T Consensus 170 pp~dLw~WyEpy 181 (453)
T KOG2888|consen 170 PPADLWDWYEPY 181 (453)
T ss_pred ChhHHHHHhhhh
Confidence 344444444443
No 229
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=82.08 E-value=0.19 Score=45.30 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
.+|+|||.||+++++-.+|..+...+--+..+.+-.. .....+.+|.|.---....|+.+||+.-+.-
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4688999999999999999999998876777666332 2345789999988777777887788866653
No 230
>PF14893 PNMA: PNMA
Probab=81.53 E-value=1.8 Score=37.31 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEec----CCCCCcEEEEEEcChHH
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI----PPRPPGYAFLEFEDYRD 57 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~V~~~~~~~----~~~~~g~afV~f~~~~~ 57 (297)
|+.++.+.|.|.+||.++++++|.+.+.. +-+.-.+.|.. ......-|+|+|...-+
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 66788899999999999999999888753 22222233311 12235678888875433
No 231
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=81.11 E-value=6.8 Score=34.31 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcC----CCeeEEEEecC-------------C----------------------
Q 022425 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------P---------------------- 42 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~-~t~~~l~~~F~~~----G~V~~~~~~~~-------------~---------------------- 42 (297)
..+++.|-|-||.++ +...+|..+|+.| |+|..|.|..+ |
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 467889999999976 8999999999876 57776666110 0
Q ss_pred --------------CCCc-------------------EEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEEcc
Q 022425 43 --------------RPPG-------------------YAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAH 81 (297)
Q Consensus 43 --------------~~~g-------------------~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~ 81 (297)
.-.| ||.|++.+.+.+...+.+|+|..+. +..+-+.|..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0012 7889999999999999999998886 4455555543
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=80.24 E-value=5.9 Score=32.94 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=40.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEecCCCCCcEEEEEEcCh-------HHHHHHHHhcC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKIPPRPPGYAFLEFEDY-------RDAEDAIRGRD 66 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V-~~~~~~~~~~~~g~afV~f~~~-------~~A~~A~~~l~ 66 (297)
.+-|+|+||+.++.-.||+..+.+.|-+ ..+.+. | ..+-||+-|.+. .++.+++..+|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk--g-~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK--G-HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee--c-CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4569999999999999999999887632 333333 3 367899999764 44455554443
No 233
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=79.67 E-value=2.3 Score=36.84 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEec-----CCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (297)
.-+.|.|.+||+.+++.+|.+-+..|- .|....+.. .....+.|||.|..+++...-...++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 346788999999999999999888874 333333321 122367899999999998888888888655
No 234
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=75.49 E-value=12 Score=27.98 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=37.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHH
Q 022425 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 62 (297)
-|+-.++..++..+|.+.++. || .|..|..+.......=|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 344456778999999999986 54 5666666554444557999998888766543
No 235
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.28 E-value=8.3 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCeeEEEE
Q 022425 20 MREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 20 ~~~l~~~F~~~G~V~~~~~ 38 (297)
..+|+++|+..|+|.-+.+
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999988777
No 236
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=73.98 E-value=77 Score=29.77 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecC
Q 022425 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (297)
Q Consensus 107 ~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 145 (297)
.....++|.+++.. +....-.+++.++|++..|.|.+..
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 34557777777643 3444455667788888877776653
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.47 E-value=23 Score=29.60 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=37.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHH
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYD 158 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~ 158 (297)
..+-|+++||+.++...+|+..+.+.+.+ -+.+.+...-+-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCcc
Confidence 44569999999999999999999887643 244444444557999997754
No 238
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=70.43 E-value=11 Score=25.46 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=33.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~ 54 (297)
..-|||||++..+-+.-...+.+..+.=.-+-+..+....||+|-.+-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 4569999999888777766666655443333333344478999988743
No 239
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.85 E-value=29 Score=22.15 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 120 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.++.++++..+.+|+-.. |..+. +| -||.|.+..+|+++....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~-tG-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR-TG-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC-CE-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 457889999999887432 22332 22 4699999999999999999998876
No 240
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=67.11 E-value=28 Score=21.76 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=31.0
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
.-.+|.++|.+.| .|.++....... +++.-|.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 4567888888776 788887754433 5666667777777777776
No 241
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=65.79 E-value=51 Score=24.20 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCC---CCHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 6 SRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 6 ~~~l~V~nL~~~---~t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.-.|.|...... .+...|.+++..-| .++.+..- .+...|.|.++++-.+|.+.|....-++..|.+..+.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 455677766333 57778888888887 55565554 4478999999999999999888766566666666643
No 242
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.97 E-value=16 Score=23.45 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=41.9
Q ss_pred HHHHHHHhcCC-CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 21 ~~l~~~F~~~G-~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
++|.+-|..+| +|..+.-+. +..+...-||+....-+... .|+=+.++|..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 47888888888 777776654 24566788888876655444 466678889999998754
No 243
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=62.41 E-value=31 Score=20.60 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=31.0
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHH
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 62 (297)
.-.+|.++|...| .|..+.+...........+.+.+.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 3456667777776 8888877554445677778888888777765
No 244
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.69 E-value=33 Score=21.99 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=41.9
Q ss_pred HHHHHHHhcCC-CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 21 ~~l~~~F~~~G-~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
++|.+-|...| +|..|.-+. ++.+....||+.+...+...+ ++=..+.+..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 57888888888 666665543 355677889998877664444 555678888999988653
No 245
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.21 E-value=4.6 Score=27.45 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHH
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLF 27 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F 27 (297)
-..++|.|.|||..+.+++|.+.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999998654
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.26 E-value=11 Score=32.79 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=49.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-------cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-------~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
....+.|..||+.++..+|.+....+-...+...+..... ..++|.|..+++.+.-...++|..+-.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 3457889999999999999998888664444333321111 268999999999888888888887744
No 247
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.05 E-value=50 Score=22.23 Aligned_cols=55 Identities=16% Similarity=0.091 Sum_probs=40.4
Q ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHHh
Q 022425 113 LVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 113 ~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 167 (297)
|+-.++..++..+|++.++. || .|..+.....+.+ .-|+|.+..-.+|.+....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34445677889999999887 55 6677777665544 37999999988888776544
No 248
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.01 E-value=26 Score=30.77 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=45.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecCCCcEEEEEEcCHHHHHHHHHH
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 166 (297)
-...|-|.++|.....++|...|+.|+.- ..|.++.+. .+|..|.....|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 45678999999999999999999998743 345555554 689999999999999874
No 249
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=59.52 E-value=8.1 Score=31.26 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~ 38 (297)
....+||+-|||...|++.|..+.+++|-|..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35678999999999999999999999996666555
No 250
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=59.02 E-value=8.2 Score=21.22 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhcCCC
Q 022425 16 GDTRMREVEDLFYKYGP 32 (297)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (297)
.++++++|+++|.+.++
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46899999999988754
No 251
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.39 E-value=74 Score=30.09 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=64.1
Q ss_pred CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC--Cccc------CCcEEEEEEccCCCCCCCCC
Q 022425 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSM 90 (297)
Q Consensus 19 t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~------~g~~i~v~~~~~~~~~~~~~ 90 (297)
-.++|.+.|..-+-|..|.+.. .||-++.+...--+...+..+. +..+ .|++|.|+++.+.+
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------ 128 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------ 128 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC------
Confidence 3445555555555577777752 4676666665555555544444 2222 47899999987443
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC
Q 022425 91 DRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (297)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~ 146 (297)
...++|+.+-..+--+-|..++...| .|+....+.|..
T Consensus 129 ------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 129 ------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred ------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 34678888888888888999999888 455555555543
No 252
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=57.03 E-value=16 Score=30.39 Aligned_cols=44 Identities=23% Similarity=0.097 Sum_probs=31.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
....|+|||+++|-.-|..++...-.+..+.+ +...|-|++.+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~-------------M~QkEva~Rl~A 139 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL-------------MVQKEVAERLVA 139 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE-------------EeHHHHHHHHhC
Confidence 46789999999999999999987655434333 344466666555
No 253
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=56.88 E-value=15 Score=28.41 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCHHHHHHHHhcC-CCeeEEEEecC--C--CCCcEEEEEEcChHHHHHHHH
Q 022425 18 TRMREVEDLFYKY-GPIVDIDLKIP--P--RPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 18 ~t~~~l~~~F~~~-G~V~~~~~~~~--~--~~~g~afV~f~~~~~A~~A~~ 63 (297)
.|+++|..+...- |++..|.+... + ..+|-.||.|.+.+.|.+.++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 5666665554433 69999988542 2 347889999999999998776
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=55.26 E-value=33 Score=23.01 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=24.3
Q ss_pred CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 32 ~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
.|..+... +..+||.|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 44444443 446999999999999999999877664
No 255
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=53.42 E-value=27 Score=24.21 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE-ecCCCCCcEEEEEEcCh
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL-KIPPRPPGYAFLEFEDY 55 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~-~~~~~~~g~afV~f~~~ 55 (297)
..-||||+++..+-+.--..+-+.++. -.+.| -.+....||+|-.+.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 456999999887766655555555543 22222 23445569998887754
No 256
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=52.88 E-value=50 Score=22.84 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHhc-------C-CCeeEEEE--------ecCCCCCc-EEEEEEcChHHHHHHHH
Q 022425 14 LPGDTRMREVEDLFYK-------Y-GPIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 14 L~~~~t~~~l~~~F~~-------~-G~V~~~~~--------~~~~~~~g-~afV~f~~~~~A~~A~~ 63 (297)
|.++++++++.++.+. . |.|..+.- ...+...| |.++.|.-.-++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4577788887666544 3 46666554 22344455 68889987777777765
No 257
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.51 E-value=69 Score=21.17 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=40.3
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHHh
Q 022425 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 167 (297)
-|+-.++..++..+|+..++. |+ +|..+....-+.+ .-|||.+..-..|......+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 445556778899999999887 55 6666766655544 37999998888887765544
No 258
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=51.38 E-value=15 Score=28.58 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=43.3
Q ss_pred ceEEEeCCCCCCC-----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 110 YRVLVTGLPSSAS-----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 110 ~~l~V~~l~~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
+.++++++...+- ....+.+|.++.+.....+.+.. +...|.|.+++.|..|..++++..+.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 4567777776542 22344556665555443333332 2577999999999999999999999985
No 259
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.41 E-value=1.4e+02 Score=27.99 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEec--------------C------------------CC--
Q 022425 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R------------------GG-- 147 (297)
Q Consensus 107 ~~~~~l~V~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~~--------------~------------------~~-- 147 (297)
.....|-|.||.+. +...+|.-+|..| |.|..|.|... + ..
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45678999999875 5777888887755 57877777521 1 00
Q ss_pred -----------------cEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 148 -----------------MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 148 -----------------~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
-||.|+|.+.+.|......++|.++...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1799999999999999999999999763
No 260
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=49.12 E-value=61 Score=29.88 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=37.0
Q ss_pred CCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCC
Q 022425 44 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (297)
Q Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (297)
...++++.|+++..+.+|+..++|..+.+..+.|..+......
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 3679999999999999999999999999988888887754433
No 261
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=48.16 E-value=76 Score=20.70 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 21 ~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
.+|.+++..+| +....|.-.| .-+++|+-+.+.+.+..+++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG-~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG-GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS-SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC-CCCeEEEEECCHHHHHHHHHHHH
Confidence 45777788888 6666665332 25688888889999888887663
No 262
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=45.74 E-value=49 Score=23.00 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 17 ~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
+-++++|..+...=|.|.+|.+..+.-..=.|.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 446788888888778999999965443355678889999999999987765
No 263
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=44.78 E-value=62 Score=22.20 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEe
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLK 39 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~ 39 (297)
..|+-.++..+|..||++.|+. || +|..|..+
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 4555667889999999999986 55 56666553
No 264
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.60 E-value=4.3 Score=35.89 Aligned_cols=74 Identities=7% Similarity=-0.138 Sum_probs=53.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
...|+..||...+++++.-+|.-||-|..+.+.. .+-..-.+||.... .+|..+|..|--..+.|..+.|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 5667889999999999999999999999988833 33334566666543 44566666565666677777777765
No 265
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=43.53 E-value=30 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=22.0
Q ss_pred cEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 46 GYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
.+++|.|.+..+|.+|-+.|...-+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 478999999999999999887655433
No 266
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=43.44 E-value=32 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred EEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEecC
Q 022425 9 LYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIP 41 (297)
Q Consensus 9 l~V~nL~~~-~t~~~l~~~F~~~G~V~~~~~~~~ 41 (297)
|-|.|||.. ++++-|.++.+.+|++..++....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 557899987 888899999999999999998653
No 267
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=43.35 E-value=62 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=27.3
Q ss_pred HHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 26 ~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
-+.+||.|..+.=. ..|+ |-|-+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 35689999887433 3454 45789999999998887644
No 268
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.15 E-value=59 Score=27.96 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=25.2
Q ss_pred EEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 48 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
|||.|.++.+|..|++.+.... +..+.|+.|..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999555433 3445776665433
No 269
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=42.71 E-value=9.3 Score=32.90 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
|+...|++++.+.|+|..-.|..+ -+.|.+||-+..++++.++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 456788999999999887666432 23788999999999999999988874
No 270
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=42.44 E-value=95 Score=20.20 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc
Q 022425 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 123 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
..++.+.+.++| +....+.....+++.|+-+.+.+.++++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 346677778888 444555555446688898988888888877663
No 271
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.17 E-value=84 Score=26.63 Aligned_cols=55 Identities=7% Similarity=0.089 Sum_probs=45.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------CCcEEEEEEcCHHHHHH
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----------GGMTGIVDYTSYDDMKY 162 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----------~~~~~fv~f~~~~~a~~ 162 (297)
-...|.+.|+...++.-.+...|.+||.|+.|.++.+. +.....+.|.+.+.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 34568889999999999999999999999999999765 12367899999887754
No 272
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=41.87 E-value=1e+02 Score=20.30 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcC-------CCeeEEEE-ecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKY-------GPIVDIDL-KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~-------G~V~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (297)
.|...+||..+|.++|.++...- ..|..+.- ......+-||+.+=.+++.+.++-+ -.|..+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCc
Confidence 46678899889999998777543 23333333 2223446777777778888777766 446543
No 273
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.83 E-value=54 Score=30.27 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=43.4
Q ss_pred EEcCCCCCC---CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEE
Q 022425 10 YVGNLPGDT---RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (297)
Q Consensus 10 ~V~nL~~~~---t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 75 (297)
+||||+.-. ....|..+=.+||+|-.++|= ..-.|...+.+.|+.|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 578886432 334556666689999988772 123677889999999998 77888888876
No 274
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=41.18 E-value=73 Score=30.53 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhcCCCeeE-----EEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 16 GDTRMREVEDLFYKYGPIVD-----IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 16 ~~~t~~~l~~~F~~~G~V~~-----~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+++.+|..++..-+.|.. |.|. ..|.||+.... .|...+..|++..+.|+.|.|+.+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 45999999999887765544 4454 57999998754 4788888899999999999999875
No 275
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=40.83 E-value=22 Score=29.65 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHh--cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFY--KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~--~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
...++|+|||++++..-|..++. .||.+.- +-+-..|.|++.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~--------------~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRM--------------VLMVQKEVAERLLA 142 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEE--------------EEEEEHHHHHHHHT
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccce--------------EEEEehhhhhhccC
Confidence 56789999999999999999987 3443222 33344567777766
No 276
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=40.79 E-value=42 Score=23.42 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=29.0
Q ss_pred eEEEcCCCCCCCHHHH---HHHHhcCCCeeEEEE-----ecCCCCCcEEEEEEcC
Q 022425 8 TLYVGNLPGDTRMREV---EDLFYKYGPIVDIDL-----KIPPRPPGYAFLEFED 54 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l---~~~F~~~G~V~~~~~-----~~~~~~~g~afV~f~~ 54 (297)
..|+.|||.++-+.++ +.+|..++.-..|.+ .......|++.+-+..
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ae 66 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVAE 66 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEEE
Confidence 3588999999888886 455556665555554 2234556766665543
No 277
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=40.71 E-value=57 Score=22.14 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEE-ecCCCCCcEEEEEEcC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDL-KIPPRPPGYAFLEFED 54 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~-~G~V~~~~~-~~~~~~~g~afV~f~~ 54 (297)
..-||||+++..+-+.--..+-+. .++ -.+.| ..++...||+|-.+.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 456999999887665544444443 232 12223 2344567888887765
No 278
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=39.91 E-value=1.6e+02 Score=26.92 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=32.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEecCC-CCCcEEEE-EEcChHHHHHHHH
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIPP-RPPGYAFL-EFEDYRDAEDAIR 63 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~~~-~~~g~afV-~f~~~~~A~~A~~ 63 (297)
++|.|.-||+.++.+.+.+.+... +++..|.=..+- ...+..|| ++.....++..+.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHH
Confidence 689999999999999988766432 333222111111 12355554 4555545544433
No 279
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=39.72 E-value=11 Score=36.25 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=8.6
Q ss_pred CCcEEEEEEcChHHHH
Q 022425 44 PPGYAFLEFEDYRDAE 59 (297)
Q Consensus 44 ~~g~afV~f~~~~~A~ 59 (297)
+..|+.+.+...+.+.
T Consensus 58 ~~~y~~t~~~~~qq~a 73 (1194)
T KOG4246|consen 58 GSVYGSTSLSSSQQLA 73 (1194)
T ss_pred cccccccchhhhhhhH
Confidence 3456666665544443
No 280
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=39.18 E-value=1.4e+02 Score=21.06 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCeeEEEE-ecCCCCCcEEEEEEcChHHHHHHH
Q 022425 22 EVEDLFYKYGPIVDIDL-KIPPRPPGYAFLEFEDYRDAEDAI 62 (297)
Q Consensus 22 ~l~~~F~~~G~V~~~~~-~~~~~~~g~afV~f~~~~~A~~A~ 62 (297)
+|.+++..+|. .+-.| +......-|||+++.+.+..-++|
T Consensus 28 E~~a~lk~agi-~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAGI-RNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcCC-ceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 56788888874 44344 333455789999999666655554
No 281
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=38.95 E-value=1.7e+02 Score=22.06 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=38.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHH
Q 022425 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIR 165 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~ 165 (297)
..|+-.++..++..+|++.+++ |+ .|..|.....+.+ .-|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4555557778899999999987 55 6666766655544 379999987777655444
No 282
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=38.64 E-value=2e+02 Score=24.99 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~ 53 (297)
.+..++|+|-+-.+=--+.|.+....-|--....+.+++ +.|.|-|-..
T Consensus 79 ~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~-~TGtCavli~ 127 (343)
T KOG2854|consen 79 QPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDG-PTGTCAVLIT 127 (343)
T ss_pred CCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCC-CCceEEEEEe
Confidence 466899999776554444555555555533333333333 3555444443
No 283
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.60 E-value=1.6e+02 Score=22.26 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEec------------CCCCCc-EEEEEEcChHH
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKI------------PPRPPG-YAFLEFEDYRD 57 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~------------~~~~~g-~afV~f~~~~~ 57 (297)
+...|++..+..-+++++..++.+.= ++++.|.|-. +...+. |-+|.|++-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 34689999999999999999998864 5777777711 222344 88999987654
No 284
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=38.20 E-value=1.3e+02 Score=28.25 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=27.3
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
.|-| +.|.++++|.+||. +|..-.|..|.|.+.-++.
T Consensus 398 ~GpA-~VF~see~a~~ai~--~g~I~~gdVvViRyeGPkG 434 (552)
T PRK00911 398 TGPA-RVFDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 4444 55999999999997 5766678878777765443
No 285
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=38.18 E-value=94 Score=18.92 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=26.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEecCC-CCCcEEEEEEcCh
Q 022425 9 LYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDY 55 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~~~-~~~g~afV~f~~~ 55 (297)
|+|-.-...-.-.+|..+|..+| .|..+...... .......+.+.+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 33433333445677889999886 77777775432 2233444445443
No 286
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=36.92 E-value=1.6e+02 Score=22.35 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.2
Q ss_pred eeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 33 V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
|..|.++. ...||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 55555442 3699999999988999999887765
No 287
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=36.42 E-value=79 Score=25.31 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCHHHHHHHHhcCCC---eeEEEEecCCCCCcEEEEEE-cChHHHHHHHHhcCCcccC
Q 022425 18 TRMREVEDLFYKYGP---IVDIDLKIPPRPPGYAFLEF-EDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~---V~~~~~~~~~~~~g~afV~f-~~~~~A~~A~~~l~g~~~~ 71 (297)
.+.+++.++...+|. |....+..-+..++ +-|.+ .++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~-GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKA-GGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTT-TCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccC-CceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888877764 55555555555565 44544 5789999999888888775
No 288
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=35.99 E-value=1.3e+02 Score=19.78 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
-+|..+.-+||..-.. .||.-.++.+... --.|-..++++-.+|++.|+. ...-+.|.|-+
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~-----eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN-----ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc-----cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 4667778888766654 7999888888642 267889999999999997776 44445555544
No 289
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=35.36 E-value=43 Score=28.57 Aligned_cols=47 Identities=15% Similarity=-0.002 Sum_probs=31.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
.+.|+|||++++...|..++.....+..+ |-+-..|-|++.+. -.|.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~-------------vlm~QkEvA~Rl~A-~pg~ 149 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCA-------------VLMFQKEFALRLLA-QPGD 149 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCcee-------------eeeehHHHHHHHhc-CCCC
Confidence 47899999999999999998653333222 22334677777665 4553
No 290
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.72 E-value=1.1e+02 Score=20.87 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=32.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEec-------CCC------CCcEEEEEEcChHH
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI-------PPR------PPGYAFLEFEDYRD 57 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~-------~~~------~~g~afV~f~~~~~ 57 (297)
..|+-.++..+|..||++.|+. || +|..|.... .+. ...-|+|++...+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 3455567889999999999985 55 555665532 111 01468898887743
No 291
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=34.50 E-value=1.2e+02 Score=24.22 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC-cccC--CcEEEEEE
Q 022425 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFD--GYRLRVEL 79 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~--g~~i~v~~ 79 (297)
.+.++..+++..++.-. +-|+.++-..|-+.+...+.++|..|+..+-. ..++ +..|.|+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 46778888888776433 55666665555566777999999999876643 3332 34444444
No 292
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.82 E-value=1.1e+02 Score=18.53 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCH----HHHHHHHHH
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY----DDMKYAIRK 166 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~----~~a~~a~~~ 166 (297)
++.|.|+.-.-....|+..+...-.|..+.+....+ .+.|.|... ++..+++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~--~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK--TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC--EEEEEEecCCCCHHHHHHHHHH
Confidence 467788887778899999999998888887765543 688888754 344455543
No 293
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=33.41 E-value=1.5e+02 Score=27.71 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=27.5
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.|-| +.|.++++|.+|+. +|..-.|-.|.|.+.-++
T Consensus 383 ~G~A-~VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPA-KVFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeE-EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 4444 45999999999997 576777888888886554
No 294
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=33.27 E-value=1.1e+02 Score=20.93 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHhcCCeeE-EEEEecCCCcEEEEEEcCHHHHHHHHHHhc
Q 022425 117 LPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 117 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
+-+.++...|..+|..-|.-.. ..+-+|--..+|.|+|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 4556777788877776663322 334444334489999999999988887664
No 295
>CHL00030 rpl23 ribosomal protein L23
Probab=32.88 E-value=1.6e+02 Score=20.31 Aligned_cols=32 Identities=9% Similarity=0.310 Sum_probs=24.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEe
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLK 39 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~ 39 (297)
..|+--++.++|..+|.+.|+. || .|..|..+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 4566667889999999999986 55 66666663
No 296
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=32.84 E-value=52 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCC
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYG 31 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G 31 (297)
.++|+|||++++...|..++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999997443
No 297
>PRK02886 hypothetical protein; Provisional
Probab=32.28 E-value=1.1e+02 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 26 ~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
-+.+||.|..+.=. ..|+ |-|-+.++|+..++.|....
T Consensus 20 ~LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 20 QLRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred HHhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 34689999886432 3444 55789999999998887644
No 298
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=31.76 E-value=2.2e+02 Score=21.19 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.9
Q ss_pred CCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 44 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
...+-+..+.+..- ..++..|.+..+.|++|.|....
T Consensus 25 ~~~~~icv~g~~~~-~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 25 SSPFRICVLGDDPF-AEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCCeEEEEECChHH-HHHHHHhhhcccCCCcEEEEECC
Confidence 35566667766664 45677799999999999998864
No 299
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=31.73 E-value=1.1e+02 Score=21.02 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=16.9
Q ss_pred CCCcEEEEEEcChHHHHHHHH
Q 022425 43 RPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 43 ~~~g~afV~f~~~~~A~~A~~ 63 (297)
.+.....|+|.+.+.|..+..
T Consensus 51 ~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 51 RPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred CcccEEEEEcCCHHHHHHHhc
Confidence 346789999999999887753
No 300
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=31.48 E-value=29 Score=32.68 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=54.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
+||+-|-...-++.-+...+..++++....++. .+...+-|+++|..+..|..|.. |.+..+....+++..
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks~p 586 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKSHP 586 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceeccc
Confidence 788888888888888888888899888877744 33445689999999999977766 777777655554433
No 301
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.45 E-value=25 Score=31.00 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=43.2
Q ss_pred CeEEEcCCCCCCCHH--------HHHHHHhc--CCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHH
Q 022425 7 RTLYVGNLPGDTRMR--------EVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~--------~l~~~F~~--~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
+.+|+.++....+.+ ++...|.. .+.+..+.+.. .....|-.|++|...+.|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456777776654444 89999988 67777777743 34668889999999999999863
No 302
>PRK02302 hypothetical protein; Provisional
Probab=31.31 E-value=1.1e+02 Score=20.78 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=27.0
Q ss_pred HHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 26 ~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
-+.+||.|..+.=. ..|+ |-|-+.++|+..++.|....
T Consensus 22 ~LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 34689999886432 3454 55889999999998887644
No 303
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=31.27 E-value=66 Score=22.49 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=16.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHh
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFY 28 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~ 28 (297)
+++.+.++++.||. .+|+.+|+.
T Consensus 61 ekeg~~i~~g~lPt---~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLPT---DEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCCC---hHHHHHHHH
Confidence 56778999999995 455555543
No 304
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.17 E-value=1.4e+02 Score=18.66 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=26.5
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecC-CCCCcEEEEEEc--ChHHHHHHHH
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIP-PRPPGYAFLEFE--DYRDAEDAIR 63 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~-~~~~g~afV~f~--~~~~A~~A~~ 63 (297)
.-..|.++|..+| .|..+..... .......+|.+. +.+.+.++|.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4567888898887 7777765433 222333445554 5555566665
No 305
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=1.9e+02 Score=20.35 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCeeEEEEEecC--CCcEEEEEEcCHHHHHHHH
Q 022425 124 QDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAI 164 (297)
Q Consensus 124 ~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~ 164 (297)
-+|..+++++|-- +..|+.+. +..||++++.+.++...++
T Consensus 27 PE~~a~lk~agi~-nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAGIR-NYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcCCc-eeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 3677788888744 44444444 5569999999665554444
No 306
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.03 E-value=1.7e+02 Score=19.85 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc
Q 022425 123 WQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 123 ~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
.+.+.++++++| ++..+.+....-.....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 455677777765 7777888777766678888988888877665443
No 307
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=30.94 E-value=72 Score=24.37 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=18.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYK 29 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~ 29 (297)
..++|+|+|++++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35779999999998888888764
No 308
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=30.88 E-value=2.4e+02 Score=25.08 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=44.5
Q ss_pred CCHHHHHHHHhcCC---CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC----cccCCcEEEEEEcc
Q 022425 18 TRMREVEDLFYKYG---PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG----YNFDGYRLRVELAH 81 (297)
Q Consensus 18 ~t~~~l~~~F~~~G---~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g----~~~~g~~i~v~~~~ 81 (297)
.+.+++..+-.++| -|....++.-+..+.=+..--.+.++|..+.+.|-| +.+.|.++..-+..
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlve 96 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVE 96 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEE
Confidence 67888888888886 344455555555555444445689999999988989 88888766655543
No 309
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=30.82 E-value=60 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYK 29 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~ 29 (297)
.++|+|||+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888754
No 310
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.61 E-value=1.3e+02 Score=18.19 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCC-CeeEEEEecCC-CCCcEEEEEEcChHHHHHHHH
Q 022425 20 MREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 20 ~~~l~~~F~~~G-~V~~~~~~~~~-~~~g~afV~f~~~~~A~~A~~ 63 (297)
-.+|.++|.++| .|..+...... .......+...+.+.+..+++
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 456777887776 67666553322 223444555667666666665
No 311
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=30.47 E-value=1.3e+02 Score=27.86 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHh----cCCCeeEEEEecCC--CCCcEEEEEEcChHHHHHHHHhcC
Q 022425 8 TLYVGNLPGDTRMREVEDLFY----KYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~----~~G~V~~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
.|.++.-..+.+--+|..+|. .+|-|..+.|+... ......++.|.+.++|..|+..+-
T Consensus 191 i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 191 ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344443222333456777775 68899998885432 334677899999999999987653
No 312
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=49 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=17.9
Q ss_pred CcEEEEEEcChHHHHHHHHhc
Q 022425 45 PGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l 65 (297)
--|.+++|.+.+.+.+|++.+
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 469999999999999988754
No 313
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=30.25 E-value=95 Score=20.49 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=17.7
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
.+..+|.|+..++-..|.. |.|..
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~~ 77 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGCE 77 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-E
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCCE
Confidence 7789999999999998887 66644
No 314
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.20 E-value=1.7e+02 Score=22.59 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
+|+..+.++-|.++-+.+|-|... . -..-.+.|.+.+..+.|++.|-
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---e----e~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---E----EDDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---c----CCcEEEEeccHHHHHHHHHHHH
Confidence 688999999999999999998887 2 1234788999999999998663
No 315
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.70 E-value=1.4e+02 Score=18.45 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=28.5
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecCC-CCCcEEEEEEcChHHHHHHHHhc
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l 65 (297)
.-.+|..+|..+| .|..+...... ...+...+.+...++...+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888998887 67777653321 12455667776555555555544
No 316
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=29.65 E-value=58 Score=27.09 Aligned_cols=33 Identities=6% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCee
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 137 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~ 137 (297)
+...++.|-+.|+|..+..-.|+....+-|++.
T Consensus 123 ~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~a 155 (275)
T COG0090 123 DIKPGNALPLGNIPEGTIVHNVELKPGDGGQLA 155 (275)
T ss_pred CcCCcceeeeccCCCCceEEeeeeccCCCceEE
Confidence 356677888889988776555555555555444
No 317
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=29.61 E-value=19 Score=23.03 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=17.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHH
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLF 27 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F 27 (297)
..+++||||.||..|-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 356899999999877666544444
No 318
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=29.56 E-value=95 Score=19.54 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=31.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE-E-EEEEcCHHHHHHHHHHhc
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-G-IVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~-fv~f~~~~~a~~a~~~l~ 168 (297)
.+.|.|+.+...-..+.+...+...|.-..+.........| . .-.|.+.++|+.++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 45666666554444444555555555443322222222222 2 336789999999999887
No 319
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=28.77 E-value=5.3e+02 Score=25.87 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=35.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhc---CCCeeEEEEecCCCCCcEEE-EEEcChHHHHHHHHhc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGR 65 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~---~G~V~~~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (297)
+.++|.|.-||+.++.+.|.+-... =|.|. |.-..+....+.-| |++....+++..+..|
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHH
Confidence 4578999999999888887665543 35554 33333222233433 5566655666665544
No 320
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=28.23 E-value=87 Score=23.69 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=35.6
Q ss_pred eEEEcCCC-CCCCHHHHHHHHhcC-CCe-eEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 8 TLYVGNLP-GDTRMREVEDLFYKY-GPI-VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 8 ~l~V~nL~-~~~t~~~l~~~F~~~-G~V-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
.+|+|+|. ...+-++|+..+... +.. .++.+. .-...+-+.|+|.-+.+|..-+..|-.
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~-~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVR-KVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceee-ccccCceEEEEEechHHHHHHHHHHhh
Confidence 35678885 224445555555433 322 223332 223467899999999999887766644
No 321
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=27.83 E-value=1.1e+02 Score=22.24 Aligned_cols=13 Identities=8% Similarity=0.409 Sum_probs=8.8
Q ss_pred CcEEEEEEcChHH
Q 022425 45 PGYAFLEFEDYRD 57 (297)
Q Consensus 45 ~g~afV~f~~~~~ 57 (297)
=||-||.|.+++.
T Consensus 97 DGFLYi~Ys~e~t 109 (121)
T PTZ00380 97 DGFLYVSVRTEQA 109 (121)
T ss_pred CCeEEEEEccccc
Confidence 4677777776654
No 322
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=27.82 E-value=2e+02 Score=20.79 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~ 38 (297)
.||||++|.....+.|.+. .+..|.++.-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~ 35 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTN 35 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccC
Confidence 5999999977665555443 4456665543
No 323
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=27.34 E-value=41 Score=21.15 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=10.6
Q ss_pred CHHHHHHHHhcCCCeeEE
Q 022425 19 RMREVEDLFYKYGPIVDI 36 (297)
Q Consensus 19 t~~~l~~~F~~~G~V~~~ 36 (297)
|-=||.+++.+||-+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345889999999976553
No 324
>COG5584 Predicted small secreted protein [Function unknown]
Probab=26.88 E-value=57 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEe
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVDIDLK 39 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~~~~~ 39 (297)
||....--+-+.+.|.++|+|+.-+|.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~ 55 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIV 55 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEE
Confidence 566666677789999999999988774
No 325
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=26.81 E-value=5.9e+02 Score=24.61 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=34.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc---CCCeeEEEEecCCCCCcEEE-EEEcChHHHHHHHHhc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGR 65 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~---~G~V~~~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 65 (297)
.++|.|.-||+.++.+.|.+.... -|+|. |.=..+....+..| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999998876543 34543 22222222233433 5556555666555433
No 326
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.70 E-value=1.6e+02 Score=17.93 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=27.2
Q ss_pred CCHHHHHHHHhcCC-CeeEEEEec-CCCCCcEEEEEEcCh--HHHHHHHHhcCC
Q 022425 18 TRMREVEDLFYKYG-PIVDIDLKI-PPRPPGYAFLEFEDY--RDAEDAIRGRDG 67 (297)
Q Consensus 18 ~t~~~l~~~F~~~G-~V~~~~~~~-~~~~~g~afV~f~~~--~~A~~A~~~l~g 67 (297)
-.-.+|..+|..+| .|..+.... .+....+..|...+. +++.++++.+.|
T Consensus 11 g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~ 64 (71)
T cd04903 11 GAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPN 64 (71)
T ss_pred ChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 35667888888886 677776643 222233444555543 334444444443
No 327
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.56 E-value=13 Score=34.12 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=48.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
...+.+++.|++++++..+|..+|..+--+..+.+...... .+++|.|.---....|+..||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45678999999999999999999998876665554433221 267888876666666666666665544
No 328
>PRK11901 hypothetical protein; Reviewed
Probab=26.45 E-value=2.6e+02 Score=24.18 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=37.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEE--EEEEcCHHHHHHHHHHhcCC
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTG--IVDYTSYDDMKYAIRKLDRS 170 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~--fv~f~~~~~a~~a~~~l~g~ 170 (297)
...++|.|..+ ..++.|..+..+.+ +..++++..... .|. +=.|.+.++|..|+..|-..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 45556666554 35777777777765 344555543222 243 34678899999999887543
No 329
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.64 E-value=35 Score=20.96 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=19.2
Q ss_pred CCcEEEEEEcC-hHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 44 PPGYAFLEFED-YRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 44 ~~g~afV~f~~-~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+|||||...+ .++.--.-..|++. ++|-.+.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 48999999987 33333333445543 344455555544
No 330
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=25.22 E-value=4.9e+02 Score=23.97 Aligned_cols=59 Identities=17% Similarity=0.037 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc---CCCeeEEEEecCCCCCcE-EEEEEcChHHHHHHHHhc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~---~G~V~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l 65 (297)
.++|.|.-||+.++.+.|.+.+.. -|.|. |.=..+....+. -.|++....+++..+..|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~~v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDLPHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCCCceEEEEECCCCCHHHHHHHH
Confidence 468999999999999998876543 35553 111222111223 345666666666666544
No 331
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=25.11 E-value=2.9e+02 Score=20.49 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 42 PRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 42 ~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
...+||.||++....+...++..+.|
T Consensus 35 ~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 35 ESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred CCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 35699999999988888888877766
No 332
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=25.09 E-value=1.4e+02 Score=23.04 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHhcCCC
Q 022425 16 GDTRMREVEDLFYKYGP 32 (297)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (297)
..+|-++|.++|.+|++
T Consensus 107 hgcT~e~I~~~F~~ys~ 123 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD 123 (175)
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 56999999999999996
No 333
>PF14893 PNMA: PNMA
Probab=24.94 E-value=59 Score=28.27 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=22.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRR 132 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~ 132 (297)
.+....|.|.+||.++.+.+|++.+..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHH
Confidence 344567999999999999999888764
No 334
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=24.90 E-value=4.6e+02 Score=23.97 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEecCCCCCcEEE-EEEcChHHHHH
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIPPRPPGYAF-LEFEDYRDAED 60 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~~~~~~g~af-V~f~~~~~A~~ 60 (297)
.++|.|.-||+.++.+.+.+..... |.|..+.= . ...+..| |++.....+..
T Consensus 227 ~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~d--s-~~~~v~i~I~lk~~~~~~~ 282 (439)
T PHA02592 227 KTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDD--C-TEDGFRFKVTLKREENEEA 282 (439)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCccc--C-CCCceEEEEEECCCCCHHH
Confidence 4579999999999988887766533 55555433 1 2244544 45555444443
No 335
>PF14191 YodL: YodL-like
Probab=24.86 E-value=2.5e+02 Score=19.73 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=27.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC---------CeeEEEEecCCCCCcEEEE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYG---------PIVDIDLKIPPRPPGYAFL 50 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G---------~V~~~~~~~~~~~~g~afV 50 (297)
..||.+.|....+.++|...|+.-- .|-+|.++..+....+-||
T Consensus 39 ~~VY~~~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~~g~~~~yYv 91 (103)
T PF14191_consen 39 RLVYDGELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVELYDGGKSSFYYV 91 (103)
T ss_pred eEEEEEecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEEEEcCCceEEEEE
Confidence 4689999987888888888886522 4555555443332333343
No 336
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=24.62 E-value=2.7e+02 Score=20.03 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 119 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
..++++++.-+..+.|. +.++|.+||...+|-.
T Consensus 73 ~~i~~edI~lv~~q~gv--------------------s~~~A~~AL~~~~gDl 105 (115)
T PRK06369 73 VEIPEEDIELVAEQTGV--------------------SEEEARKALEEANGDL 105 (115)
T ss_pred CCCCHHHHHHHHHHHCc--------------------CHHHHHHHHHHcCCcH
Confidence 35789999999988773 5788999999888754
No 337
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=24.30 E-value=2.9e+02 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=26.0
Q ss_pred EEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 50 LEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 50 V~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
+.|.++++|.+||. +|..-.|..|.|.+.-++.
T Consensus 452 ~VFdsee~a~~ai~--~g~I~~gdVvVIRyeGPkG 484 (615)
T PRK12448 452 RVFESQDDAVEAIL--GGKVKAGDVVVIRYEGPKG 484 (615)
T ss_pred EEECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCC
Confidence 56999999999997 4766678888888865544
No 338
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.09 E-value=2.3e+02 Score=22.09 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCc--EE-EEEEcChHHHHHH---HHhcCCcccCCcEEEEEEcc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPG--YA-FLEFEDYRDAEDA---IRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g--~a-fV~f~~~~~A~~A---~~~l~g~~~~g~~i~v~~~~ 81 (297)
.|.|.-=|..++-++|.++| |-.+.-..+..-+.-.| |- -|-+.++++.+.| ++.+......+++|.+++..
T Consensus 59 ~V~V~yDp~~isy~~LL~~f--f~ihDPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p 136 (174)
T COG0225 59 AVEVTYDPKVISYEELLEVF--FEIHDPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEP 136 (174)
T ss_pred EEEEEeCCccccHHHHHHHH--heecCCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeec
Confidence 45566567778888888888 32122222222222222 22 2445566655544 44455445566677777743
No 339
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=23.90 E-value=2.1e+02 Score=18.48 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=30.3
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecCCCCC--cEEEEEEcC---hHHHHHHHHhcCC
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIPPRPP--GYAFLEFED---YRDAEDAIRGRDG 67 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~~~~~--g~afV~f~~---~~~A~~A~~~l~g 67 (297)
.-.+|.++|.++| .|..+......... -..||++.. .++...+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4667888998886 67777654332212 244566663 5666677776665
No 340
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.69 E-value=76 Score=17.47 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHhcCCCee
Q 022425 17 DTRMREVEDLFYKYGPIV 34 (297)
Q Consensus 17 ~~t~~~l~~~F~~~G~V~ 34 (297)
.++.++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 478999999999998543
No 341
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=23.56 E-value=5.9e+02 Score=23.51 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 15 PGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 15 ~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
+...++++|.++|++-+.-.++++.. +..+.|+-+|.|.. ..||..+.|..|.|.+.+..
T Consensus 48 ~~a~~~Kei~~~l~~~n~~~nlk~~~~~td~~G~t~vr~~q---------~vnGvpv~g~~v~vh~dk~g 108 (507)
T COG3227 48 KSAPNEKEILQFLENVNADNNLKAISTDTDPNGFTHVRYQQ---------VVNGVPVKGSEVIVHLDKNG 108 (507)
T ss_pred cccCChHHHHHHHhcCChhhceeeEEeeccCCCceEEEEEe---------eECCeeccCceEEEEECCCC
Confidence 35588999999998666556666644 34568999999973 37999999999999997543
No 342
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=2.3e+02 Score=19.33 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHh-cCC-CeeEEEEecCCCC----CcEEEEEEcChHHHHHHHHhcCCc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYG-PIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~-~~G-~V~~~~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
++.+.||+ +|-..++-.-|.+.|+ ..| ....+.++.+|+. +.=+=+.|++-++.++..+.+.|.
T Consensus 32 qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 32 QDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred CCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 45566654 6888888889999997 445 4555666554321 223446678877777777655553
No 343
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.13 E-value=54 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCCe
Q 022425 10 YVGNLPGDTRMREVEDLFYKYGPI 33 (297)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~~G~V 33 (297)
-+.||=.+++.+.|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 367888899999999999999854
No 344
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=23.10 E-value=1.6e+02 Score=16.71 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=23.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~ 39 (297)
+.|..-++...++.++|.+++..+.+ ..+.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHCS-SEEEEE
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcCC-CEEEEe
Confidence 45555568999999999999999865 665553
No 345
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=22.88 E-value=3.1e+02 Score=25.91 Aligned_cols=37 Identities=27% Similarity=0.202 Sum_probs=26.3
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCccc--CCcEEEEEEccCCC
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGGR 84 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~~~~~~ 84 (297)
.|-| +.|.++++|.+|+. +|..- .|..|.|.+.-++.
T Consensus 401 ~G~A-~VF~see~a~~ai~--~g~i~i~~gdVvVIRyeGPkG 439 (571)
T PRK06131 401 EGRA-VVFEGYEDYKARID--DPDLDVDEDTVLVLRNAGPKG 439 (571)
T ss_pred Eeee-EEECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCC
Confidence 3444 55999999999986 66542 68788887765544
No 346
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=22.69 E-value=2e+02 Score=17.88 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.6
Q ss_pred HHHHHhcCC-CeeE----EEEecC-CCCCcEEEEEEcChHHHHHHHH
Q 022425 23 VEDLFYKYG-PIVD----IDLKIP-PRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 23 l~~~F~~~G-~V~~----~~~~~~-~~~~g~afV~f~~~~~A~~A~~ 63 (297)
+..++.+|| +|+- ..++.. .......+|+|.+.+.|...+.
T Consensus 11 ~~~~l~~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 11 VPPILEKYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHTT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHcCCEEEEECCceeEEecCCCCCeEEEEECCCHHHHHHHHC
Confidence 456777776 3322 122222 3446789999999999888753
No 347
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=22.68 E-value=73 Score=20.14 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=16.1
Q ss_pred HHhcCCCeeEEEEecCCCCCcEEEEEEcC
Q 022425 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (297)
Q Consensus 26 ~F~~~G~V~~~~~~~~~~~~g~afV~f~~ 54 (297)
+|+.=|+|.+++ -.||+|.|.-
T Consensus 31 ife~~GEvl~ik-------gdYa~vr~~~ 52 (67)
T PF11910_consen 31 IFEGPGEVLDIK-------GDYAQVRFRV 52 (67)
T ss_pred eecCCCeEEEec-------CCEEEEEecC
Confidence 577778887763 4599999953
No 348
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=22.45 E-value=5.1e+02 Score=22.40 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHhcC------CCeeEEEEecCCCCCcEEEEEEcCh
Q 022425 17 DTRMREVEDLFYKY------GPIVDIDLKIPPRPPGYAFLEFEDY 55 (297)
Q Consensus 17 ~~t~~~l~~~F~~~------G~V~~~~~~~~~~~~g~afV~f~~~ 55 (297)
..+++++.++|++| |.|....+..- ....+||.+...
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i--~~~g~~Vdig~k 54 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSL--EPRGALIDIGAK 54 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEE--ECCEEEEEECCC
Confidence 46778888888654 78877777431 145677777543
No 349
>PLN02286 arginine-tRNA ligase
Probab=22.28 E-value=6.8e+02 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=34.6
Q ss_pred CCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC
Q 022425 71 DGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR 145 (297)
Q Consensus 71 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 145 (297)
.+++|.|+|+.+.. ...++|+.+-..+--+-|..++..+| .|.......|.
T Consensus 115 ~~~~v~VEfsSpNp------------------------~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 115 PVKRAVVDFSSPNI------------------------AKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred CCceEEEEecCCCC------------------------CCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 35789999987443 34567777777777777888888877 44445444443
No 350
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.24 E-value=4.4e+02 Score=24.96 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=57.3
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcccCCcEEE-EEEccCCCCCCCC-CCCCCCCCCCCCC----CCCCCCCceEEEeCCC
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR-VELAHGGRRHSSS-MDRYSSYSSGGSR----GVSRRSDYRVLVTGLP 118 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~-v~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~l~V~~l~ 118 (297)
+--|||.+.+++.-+-.-++|+-..+.+-.|. |.. ..+++ .+.-..|.....+ -+.......+|+.+|.
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GP-----RYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlS 310 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGP-----RYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLS 310 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCC-----CCCCCHHHhhccCCCCccceEEecCCCCCCceEecCccc
Confidence 45799999999988888888887665543332 100 00000 0000111111111 1222346689999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEEec
Q 022425 119 SSASWQDLKDHMRRAGDVCFSQVFRD 144 (297)
Q Consensus 119 ~~~~~~~l~~~f~~~g~i~~~~~~~~ 144 (297)
..+.++.-.++....-.++++.+.+.
T Consensus 311 TSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 311 TSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred ccCCHHHHHHHHHhCcccccceeecc
Confidence 99998888888887777777777764
No 351
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.06 E-value=25 Score=22.46 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhc
Q 022425 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 21 ~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 65 (297)
++|.+.|..++....+. +-.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHh
Confidence 67777776654333321 224788999999988877654
No 352
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=22.03 E-value=1.7e+02 Score=23.66 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEcCCCCCCCHHHH--------HHHHhcCCCeeEEEEecCCCCCcEEEEEEcCh
Q 022425 10 YVGNLPGDTRMREV--------EDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (297)
Q Consensus 10 ~V~nL~~~~t~~~l--------~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~ 55 (297)
||-.||..+|.++- .++|..+|-+.++.|..++...-.|-|-|.+-
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~R 124 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTTR 124 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--B
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeecC
Confidence 56679999888873 44466778888888875444445666766543
No 353
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.68 E-value=1.8e+02 Score=21.06 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=21.4
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 149 TGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
-|...|.+-+.|-.|.+.|-|..+.-
T Consensus 115 raifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 115 RAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred eEEEEEeChhHHHHHHHHhhccchhe
Confidence 57788999999999998888877764
No 354
>PF15585 Imm46: Immunity protein 46
Probab=21.50 E-value=86 Score=23.00 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=34.6
Q ss_pred CCCeEEEcCCCCCCC--HHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHH
Q 022425 5 SSRTLYVGNLPGDTR--MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA 58 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t--~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A 58 (297)
-...|.|++++.+-+ .++|.++|...|++. +..|+++-..+.|+.
T Consensus 50 G~~~l~~~g~~NHr~~~~~eii~lf~~i~e~a---------PGSYGlLy~rDDEd~ 96 (129)
T PF15585_consen 50 GSYFLHFGGLSNHRGQEAPEIIELFERIAEIA---------PGSYGLLYIRDDEDP 96 (129)
T ss_pred CcEEEEEccccCCCccchHHHHHHHHHHHHhC---------CCceeEEEEecCCCC
Confidence 345788999987766 668999999988743 267888888888865
No 355
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.44 E-value=2.1e+02 Score=17.45 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=27.6
Q ss_pred CHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 19 t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
.-.+|..+|..++ .|..+..........+..|.+.+......+++.|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 13 VLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEeccccHHHHHHHHh
Confidence 4567788888775 77777664432223445566665544444444443
No 356
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.41 E-value=2e+02 Score=17.18 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCe
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPI 33 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V 33 (297)
..++|.+.....+.++|.+++..+|--
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467788877688999999999999863
No 357
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=21.34 E-value=65 Score=22.83 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=16.5
Q ss_pred cCCCCCCCHHHHHHHHhcCCC
Q 022425 12 GNLPGDTRMREVEDLFYKYGP 32 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G~ 32 (297)
|.|...+|+++|.+|+.....
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 678889999999999998764
No 358
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=21.22 E-value=1.9e+02 Score=25.30 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHhc-CCCeeEEEEecC--------CCCCcEEEEEEcChH
Q 022425 14 LPGDTRMREVEDLFYK-YGPIVDIDLKIP--------PRPPGYAFLEFEDYR 56 (297)
Q Consensus 14 L~~~~t~~~l~~~F~~-~G~V~~~~~~~~--------~~~~g~afV~f~~~~ 56 (297)
|...+|.++|.++|.. |..-.-|+|... -....||.|-|...+
T Consensus 253 l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 253 LKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred cCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 4445899999999985 454445555331 134678888887665
No 359
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=20.79 E-value=3.2e+02 Score=19.43 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=34.5
Q ss_pred cCCCCCCCHHHHHHHHh-cCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 12 GNLPGDTRMREVEDLFY-KYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F~-~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
-++...|.-.+|+++|. .|. .=..+.|.... ..-.|+.|.+.+.+++.+..|.
T Consensus 52 ~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d--~~~~f~~F~~~~~~k~vv~~lp 106 (108)
T cd01201 52 EELHGKWPFSEIRAIFSRRYLLQNTALELFLAS--RTSIFFAFPDQNAVKKVVYALP 106 (108)
T ss_pred ccccceeeHHHHHHHHHHhhhcccceEEEEEeC--CceEEEEeCcHHHHHHHHhhcC
Confidence 34455688889999887 443 11122222211 4678999999999999887664
No 360
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.74 E-value=3e+02 Score=20.70 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
.|+..+.++-|.++-+..|.|..+.-. --.+.|.+.+...+|++.+-
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E~-------D~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEEY-------DLVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeeec-------cEEEEeccHHHHHHHHHHHH
Confidence 467778889999999999988876532 23567899999999998653
No 361
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.62 E-value=68 Score=20.70 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=20.5
Q ss_pred CcEEEEEEcCh-HHHH---HHHHhcCC--cccCCcEEEEEEccCC
Q 022425 45 PGYAFLEFEDY-RDAE---DAIRGRDG--YNFDGYRLRVELAHGG 83 (297)
Q Consensus 45 ~g~afV~f~~~-~~A~---~A~~~l~g--~~~~g~~i~v~~~~~~ 83 (297)
+||+||+=.+- +++- .||. -+| ....|..|..++....
T Consensus 16 KGfGFI~~~~g~~DvFvH~s~l~-~~g~~~l~~G~~V~f~v~~~~ 59 (70)
T PRK15464 16 SGKGFIIPSDGRKEVQVHISAFT-PRDAEVLIPGLRVEFCRVNGL 59 (70)
T ss_pred CCeEEEccCCCCccEEEEehheh-hcCCCCCCCCCEEEEEEEECC
Confidence 89999976652 2322 2332 122 2445667766665543
No 362
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=20.58 E-value=44 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=17.5
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeE
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVD 35 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~ 35 (297)
.|...+|+++|.+.....+.+..
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~~ 27 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIPN 27 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCCC
Confidence 45677889999888888876554
No 363
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=20.44 E-value=1.2e+02 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC
Q 022425 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (297)
Q Consensus 121 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 169 (297)
+-+++|.+.|.-+..-.+.+.+. ...+++-+.|.++++|++..+.+..
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFe-gddc~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFE-GDDCQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred eehHHhhhhceeccCccceeeec-cccceeeecccCHHHHHHHHHHHHH
Confidence 34566666666544333333333 2233666888999999887766543
No 364
>PRK05560 DNA gyrase subunit A; Validated
Probab=20.28 E-value=5.6e+02 Score=25.60 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEecC-CCCCcEEEE-EEcChHHHHHHHH
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIP-PRPPGYAFL-EFEDYRDAEDAIR 63 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~~-~~~~g~afV-~f~~~~~A~~A~~ 63 (297)
.++|.|.-||+.++.+.|.+..... ++|..+.=..+ ....|+.|| ++....+++..+.
T Consensus 251 ~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~~~i~~~~~~~~~~~~~ 313 (805)
T PRK05560 251 REAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESDRDGMRIVIELKRDAVPEVVLN 313 (805)
T ss_pred CcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHH
Confidence 4679999999999988876665432 33333211222 123455554 4554445555444
No 365
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=20.00 E-value=44 Score=28.95 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=40.2
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCC
Q 022425 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (297)
Q Consensus 122 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~ 170 (297)
....+.+.+.+.|.+..-.+.+.-|=|.+||-.-..+++.++++.|++.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3567888888899887776666666668899999999999999999875
Done!