Query 022425
Match_columns 297
No_of_seqs 287 out of 2805
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:17:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.6E-35 1.2E-39 237.4 17.9 164 4-189 13-181 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.7E-33 5.9E-38 225.3 20.2 179 4-184 2-202 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 3.3E-33 1.1E-37 217.1 20.8 159 7-187 1-165 (166)
4 1fxl_A Paraneoplastic encephal 100.0 5.4E-33 1.9E-37 216.0 20.1 151 5-175 1-158 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.6E-32 5.5E-37 213.7 20.7 150 5-174 2-158 (168)
6 3pgw_A U1-A; protein-RNA compl 100.0 3.9E-32 1.3E-36 229.1 24.7 181 2-187 5-281 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 1.8E-32 6.2E-37 218.8 19.8 167 3-189 10-183 (196)
8 2yh0_A Splicing factor U2AF 65 100.0 1.4E-31 4.9E-36 213.9 24.1 178 4-189 2-194 (198)
9 2qfj_A FBP-interacting repress 100.0 8.3E-32 2.8E-36 218.2 20.6 172 5-189 27-205 (216)
10 2adc_A Polypyrimidine tract-bi 100.0 1.9E-31 6.5E-36 217.9 21.1 178 4-188 32-227 (229)
11 3nmr_A Cugbp ELAV-like family 100.0 8.8E-32 3E-36 210.8 18.2 161 5-185 2-173 (175)
12 2g4b_A Splicing factor U2AF 65 100.0 1.9E-31 6.6E-36 208.4 19.9 155 4-186 2-171 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 1.4E-32 4.7E-37 215.6 12.7 163 3-189 10-174 (175)
14 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-31 7.8E-36 212.8 19.3 176 5-187 2-195 (198)
15 2cjk_A Nuclear polyadenylated 100.0 2.8E-32 9.5E-37 212.1 12.5 159 4-189 1-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 4.6E-30 1.6E-34 216.7 20.1 165 4-189 93-264 (284)
17 3sde_A Paraspeckle component 1 100.0 3.4E-30 1.2E-34 214.6 18.3 157 4-189 20-179 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 4.5E-30 1.6E-34 217.5 18.1 167 5-189 116-291 (292)
19 3smz_A Protein raver-1, ribonu 100.0 1.8E-29 6.2E-34 213.0 21.3 152 4-189 20-175 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.8E-29 1.3E-33 211.8 18.9 154 4-189 39-197 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.8E-25 9.6E-30 161.3 9.5 109 5-125 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.3E-22 4.3E-27 179.5 20.1 85 4-88 100-187 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-23 1.2E-27 145.8 9.6 78 5-82 18-98 (99)
24 3lqv_A PRE-mRNA branch site pr 99.9 3.5E-23 1.2E-27 150.4 8.9 105 3-135 5-109 (115)
25 3pgw_S U1-70K; protein-RNA com 99.9 4.5E-22 1.5E-26 176.0 16.9 165 13-189 4-182 (437)
26 1x4a_A Splicing factor, argini 99.9 8.4E-22 2.9E-26 141.6 11.4 84 2-85 18-101 (109)
27 3s8s_A Histone-lysine N-methyl 99.9 6.1E-22 2.1E-26 142.0 10.2 81 3-83 3-86 (110)
28 2hvz_A Splicing factor, argini 99.9 4E-22 1.4E-26 141.3 9.0 100 7-118 1-100 (101)
29 2fy1_A RNA-binding motif prote 99.9 3.3E-21 1.1E-25 139.8 12.8 85 1-85 2-88 (116)
30 2lxi_A RNA-binding protein 10; 99.9 3.9E-22 1.3E-26 138.2 7.5 80 6-85 1-85 (91)
31 1whw_A Hypothetical protein ri 99.9 4.2E-21 1.4E-25 135.5 12.9 84 3-86 5-91 (99)
32 2wbr_A GW182, gawky, LD47780P; 99.9 9.6E-22 3.3E-26 131.7 8.9 75 4-81 5-79 (89)
33 1sjq_A Polypyrimidine tract-bi 99.9 1.1E-21 3.7E-26 137.8 9.2 81 3-86 13-95 (105)
34 3r27_A HnRNP L, heterogeneous 99.9 2E-21 6.7E-26 135.2 10.2 78 4-84 19-98 (100)
35 2lkz_A RNA-binding protein 5; 99.9 8E-22 2.7E-26 137.2 8.2 80 3-82 6-94 (95)
36 2a3j_A U1 small nuclear ribonu 99.9 2.4E-21 8.2E-26 142.1 10.7 82 3-84 26-111 (127)
37 2cpf_A RNA binding motif prote 99.9 3E-21 1E-25 136.0 10.4 84 3-86 2-91 (98)
38 2x1f_A MRNA 3'-END-processing 99.9 3.3E-21 1.1E-25 135.2 10.5 80 5-84 1-83 (96)
39 2cqi_A Nucleolysin TIAR; RNA r 99.9 8.2E-21 2.8E-25 135.0 12.5 83 3-85 12-95 (103)
40 2dnz_A Probable RNA-binding pr 99.9 7.7E-21 2.6E-25 133.1 12.0 83 3-85 2-87 (95)
41 2dnm_A SRP46 splicing factor; 99.9 4.4E-21 1.5E-25 136.4 10.8 84 3-86 10-96 (103)
42 2dgx_A KIAA0430 protein; RRM d 99.8 5.5E-21 1.9E-25 134.0 10.5 81 4-84 7-91 (96)
43 3md1_A Nuclear and cytoplasmic 99.8 4.6E-21 1.6E-25 130.7 9.9 78 6-83 1-81 (83)
44 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.9E-21 1.7E-25 135.9 10.3 84 4-87 10-96 (102)
45 1x5u_A Splicing factor 3B subu 99.8 9.5E-21 3.2E-25 135.2 11.9 83 3-85 12-97 (105)
46 2do4_A Squamous cell carcinoma 99.8 7.6E-21 2.6E-25 134.4 11.2 81 4-84 15-97 (100)
47 2dgs_A DAZ-associated protein 99.8 1.3E-20 4.4E-25 133.0 12.3 83 3-86 7-92 (99)
48 2ad9_A Polypyrimidine tract-bi 99.8 5.3E-21 1.8E-25 137.8 10.5 82 3-87 28-111 (119)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.1E-21 1.4E-25 131.6 9.5 79 3-81 4-85 (85)
50 2d9p_A Polyadenylate-binding p 99.8 6.5E-21 2.2E-25 135.5 10.7 84 3-86 12-96 (103)
51 1nu4_A U1A RNA binding domain; 99.8 1.6E-21 5.3E-26 137.2 7.4 84 1-84 3-90 (97)
52 1x4d_A Matrin 3; structural ge 99.8 2E-21 6.9E-26 136.5 7.8 80 3-85 12-94 (102)
53 2dgo_A Cytotoxic granule-assoc 99.8 1.6E-20 5.3E-25 136.3 12.8 84 3-86 12-98 (115)
54 2e5h_A Zinc finger CCHC-type a 99.8 7.9E-21 2.7E-25 132.8 10.8 78 4-81 14-94 (94)
55 1x5t_A Splicing factor 3B subu 99.8 5.8E-21 2E-25 134.0 10.1 83 3-85 2-88 (96)
56 2cq1_A PTB-like protein L; RRM 99.8 1.1E-20 3.9E-25 132.8 11.5 81 3-86 12-94 (101)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.7E-21 1.3E-25 132.4 8.8 80 4-83 4-86 (87)
58 2cq0_A Eukaryotic translation 99.8 5.1E-21 1.7E-25 136.1 9.7 83 3-85 12-97 (103)
59 2i2y_A Fusion protein consists 99.8 1.4E-20 4.7E-25 143.2 12.6 138 42-189 10-148 (150)
60 2cq3_A RNA-binding protein 9; 99.8 2E-20 6.8E-25 133.0 12.5 84 3-86 12-96 (103)
61 2dgv_A HnRNP M, heterogeneous 99.8 7.3E-21 2.5E-25 132.4 10.0 83 3-85 5-88 (92)
62 1x5s_A Cold-inducible RNA-bind 99.8 7.7E-21 2.6E-25 134.9 10.0 82 4-85 10-94 (102)
63 2cqd_A RNA-binding region cont 99.8 3.8E-20 1.3E-24 134.5 13.8 82 3-85 14-98 (116)
64 2do0_A HnRNP M, heterogeneous 99.8 2.6E-20 8.9E-25 134.9 12.8 83 3-85 12-96 (114)
65 2dgu_A Heterogeneous nuclear r 99.8 2.6E-20 8.8E-25 132.4 12.5 79 4-87 9-87 (103)
66 2cph_A RNA binding motif prote 99.8 1.6E-20 5.4E-25 134.5 11.5 83 3-85 12-99 (107)
67 2kn4_A Immunoglobulin G-bindin 99.8 4.1E-20 1.4E-24 141.9 14.6 144 36-190 3-151 (158)
68 2cpz_A CUG triplet repeat RNA- 99.8 9.2E-21 3.1E-25 137.5 10.0 83 4-86 23-108 (115)
69 2cqc_A Arginine/serine-rich sp 99.8 8.2E-21 2.8E-25 133.0 9.4 80 3-82 12-94 (95)
70 2dgt_A RNA-binding protein 30; 99.8 2.4E-20 8.4E-25 129.7 11.6 78 3-85 7-84 (92)
71 4a8x_A RNA-binding protein wit 99.8 1.1E-20 3.9E-25 130.3 9.8 81 4-84 2-86 (88)
72 1wex_A Hypothetical protein (r 99.8 1.3E-20 4.5E-25 133.3 10.2 79 4-85 13-93 (104)
73 2div_A TRNA selenocysteine ass 99.8 8.8E-21 3E-25 133.8 9.3 82 3-84 6-95 (99)
74 1p27_B RNA-binding protein 8A; 99.8 8.1E-21 2.8E-25 135.8 9.2 81 4-84 21-104 (106)
75 1x4h_A RNA-binding protein 28; 99.8 2.7E-20 9.2E-25 134.2 12.0 82 4-85 13-103 (111)
76 2ywk_A Putative RNA-binding pr 99.8 9E-21 3.1E-25 132.8 9.2 80 3-82 13-94 (95)
77 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-20 5.3E-25 134.1 10.6 82 4-85 13-99 (105)
78 2dnq_A RNA-binding protein 4B; 99.8 1.9E-20 6.5E-25 129.7 10.7 78 3-85 5-82 (90)
79 1x4c_A Splicing factor, argini 99.8 2.4E-20 8.3E-25 133.6 11.6 78 4-85 13-95 (108)
80 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-20 5.2E-25 133.8 10.2 81 3-85 12-96 (104)
81 1why_A Hypothetical protein ri 99.8 2.4E-20 8.1E-25 131.1 10.7 78 4-84 15-94 (97)
82 2dgp_A Bruno-like 4, RNA bindi 99.8 2E-20 6.8E-25 133.8 10.2 83 3-85 10-98 (106)
83 2jvr_A Nucleolar protein 3; RN 99.8 1.4E-20 4.6E-25 134.6 9.3 79 4-83 26-105 (111)
84 2kxn_B Transformer-2 protein h 99.8 1.1E-20 3.6E-25 139.6 9.0 82 3-84 43-127 (129)
85 2dnp_A RNA-binding protein 14; 99.8 2.7E-20 9.3E-25 128.9 10.6 78 3-85 6-83 (90)
86 2nlw_A Eukaryotic translation 99.8 2.6E-20 9E-25 132.7 10.7 81 4-84 13-101 (105)
87 3ns6_A Eukaryotic translation 99.8 3E-21 1E-25 136.3 5.7 80 3-82 3-92 (100)
88 2cpi_A CCR4-NOT transcription 99.8 9.4E-21 3.2E-25 136.5 8.4 81 4-84 13-102 (111)
89 1s79_A Lupus LA protein; RRM, 99.8 1.4E-20 4.7E-25 133.2 9.0 79 3-82 8-88 (103)
90 3ulh_A THO complex subunit 4; 99.8 1.9E-20 6.7E-25 134.0 9.7 78 4-81 27-106 (107)
91 2khc_A Testis-specific RNP-typ 99.8 1.6E-20 5.5E-25 136.9 9.4 79 3-81 37-118 (118)
92 1oo0_B CG8781-PA, drosophila Y 99.8 2E-20 6.7E-25 134.7 9.5 81 4-84 24-107 (110)
93 3p5t_L Cleavage and polyadenyl 99.8 3.1E-21 1E-25 133.6 5.0 79 7-85 2-85 (90)
94 2jrs_A RNA-binding protein 39; 99.8 1.6E-20 5.4E-25 134.5 8.9 81 3-83 23-106 (108)
95 2err_A Ataxin-2-binding protei 99.8 2.1E-20 7.2E-25 134.1 9.5 80 4-83 27-107 (109)
96 2xnq_A Nuclear polyadenylated 99.8 4.2E-20 1.4E-24 129.6 10.7 76 3-83 19-95 (97)
97 3s7r_A Heterogeneous nuclear r 99.8 4.8E-20 1.6E-24 126.8 10.6 77 3-80 8-87 (87)
98 3ex7_B RNA-binding protein 8A; 99.8 2.5E-20 8.7E-25 137.5 9.8 83 4-86 20-105 (126)
99 1x4f_A Matrin 3; structural ge 99.8 8.4E-21 2.9E-25 135.2 6.8 80 3-85 22-104 (112)
100 2cpe_A RNA-binding protein EWS 99.8 2.7E-20 9.3E-25 134.6 9.6 83 3-85 12-105 (113)
101 2la6_A RNA-binding protein FUS 99.8 2.3E-20 7.9E-25 131.6 9.0 78 4-81 11-99 (99)
102 2dng_A Eukaryotic translation 99.8 4.4E-20 1.5E-24 131.2 10.5 81 3-85 12-95 (103)
103 2cpj_A Non-POU domain-containi 99.8 3.6E-20 1.2E-24 130.7 9.9 79 4-85 13-91 (99)
104 3ucg_A Polyadenylate-binding p 99.8 5.3E-20 1.8E-24 127.2 10.4 78 5-83 5-85 (89)
105 2jvo_A Nucleolar protein 3; nu 99.8 3.3E-20 1.1E-24 132.7 9.5 77 3-84 28-104 (108)
106 2dhg_A TRNA selenocysteine ass 99.8 4.3E-20 1.5E-24 131.5 10.1 83 3-85 6-92 (104)
107 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-20 1.3E-24 126.7 9.5 76 3-81 9-85 (85)
108 1x4g_A Nucleolysin TIAR; struc 99.8 6.8E-20 2.3E-24 131.6 11.2 79 4-85 23-101 (109)
109 1u6f_A Tcubp1, RNA-binding pro 99.8 8.1E-20 2.8E-24 137.1 12.0 84 3-86 39-125 (139)
110 2krb_A Eukaryotic translation 99.8 1.6E-20 5.6E-25 127.3 7.1 72 6-77 1-80 (81)
111 2kvi_A Nuclear polyadenylated 99.8 3E-20 1E-24 130.3 8.4 78 3-85 7-85 (96)
112 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-19 4.4E-24 127.8 11.7 77 4-85 13-91 (99)
113 2cpx_A Hypothetical protein FL 99.8 5.4E-20 1.9E-24 133.5 9.8 82 4-86 23-108 (115)
114 2e5j_A Methenyltetrahydrofolat 99.8 4.6E-20 1.6E-24 129.6 9.0 79 4-84 17-95 (97)
115 2fc9_A NCL protein; structure 99.8 6.5E-20 2.2E-24 129.8 9.9 81 4-85 13-93 (101)
116 1p1t_A Cleavage stimulation fa 99.8 2.2E-20 7.6E-25 133.0 7.4 81 4-84 6-89 (104)
117 2kt5_A RNA and export factor-b 99.8 1.2E-19 4E-24 133.5 11.5 83 4-86 33-117 (124)
118 2dis_A Unnamed protein product 99.8 1.5E-19 5.2E-24 129.8 11.8 83 3-85 5-94 (109)
119 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 3.9E-24 130.2 11.0 81 4-85 23-106 (109)
120 1whx_A Hypothetical protein ri 99.8 4.9E-20 1.7E-24 132.6 8.9 78 4-84 8-85 (111)
121 2dh8_A DAZ-associated protein 99.8 5.4E-20 1.8E-24 131.2 9.1 83 3-86 13-98 (105)
122 2cqp_A RNA-binding protein 12; 99.8 2.4E-20 8.2E-25 131.3 7.0 80 4-83 13-95 (98)
123 2la4_A Nuclear and cytoplasmic 99.8 4E-20 1.4E-24 131.0 8.1 76 4-82 25-100 (101)
124 3n9u_C Cleavage and polyadenyl 99.8 5.9E-20 2E-24 140.0 9.6 78 5-82 54-136 (156)
125 1h2v_Z 20 kDa nuclear CAP bind 99.8 9E-20 3.1E-24 139.6 10.7 82 4-85 37-121 (156)
126 2cqh_A IGF-II mRNA-binding pro 99.8 7.5E-20 2.6E-24 127.5 9.0 79 3-85 5-85 (93)
127 2cq2_A Hypothetical protein LO 99.8 7.6E-20 2.6E-24 130.3 9.1 80 2-84 21-107 (114)
128 2ek1_A RNA-binding protein 12; 99.8 1.9E-20 6.6E-25 131.0 5.8 79 4-82 13-94 (95)
129 2mss_A Protein (musashi1); RNA 99.8 4.6E-20 1.6E-24 123.2 7.3 72 8-80 1-75 (75)
130 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.5E-25 129.1 4.7 79 3-81 2-83 (85)
131 2cq4_A RNA binding motif prote 99.8 8.9E-20 3E-24 132.1 9.1 78 5-83 24-104 (114)
132 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.9E-20 1.3E-24 130.6 7.0 78 4-83 17-98 (100)
133 1fjc_A Nucleolin RBD2, protein 99.8 4.3E-20 1.5E-24 129.5 7.0 79 4-84 14-92 (96)
134 2dgw_A Probable RNA-binding pr 99.8 1.9E-19 6.4E-24 124.9 10.1 80 3-84 7-88 (91)
135 2lea_A Serine/arginine-rich sp 99.8 6.3E-20 2.1E-24 136.6 7.7 82 4-85 45-129 (135)
136 2diu_A KIAA0430 protein; struc 99.8 3.1E-19 1.1E-23 120.6 10.4 76 4-86 6-87 (96)
137 1wf1_A RNA-binding protein RAL 99.8 1.7E-19 5.8E-24 129.7 9.7 76 5-85 26-102 (110)
138 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.2E-20 2.1E-24 123.2 6.7 73 7-80 1-76 (77)
139 2cqg_A TDP-43, TAR DNA-binding 99.8 4E-19 1.4E-23 126.2 11.3 81 3-85 12-95 (103)
140 2m2b_A RNA-binding protein 10; 99.8 5.4E-20 1.9E-24 136.5 6.9 82 3-85 20-110 (131)
141 2kn4_A Immunoglobulin G-bindin 99.8 3.3E-19 1.1E-23 136.8 11.4 82 4-85 68-152 (158)
142 2fc8_A NCL protein; structure 99.8 1.1E-19 3.7E-24 128.9 8.1 83 3-85 12-94 (102)
143 1wg5_A Heterogeneous nuclear r 99.8 2.6E-19 9E-24 127.3 10.0 80 4-84 13-95 (104)
144 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-19 4.3E-24 140.0 9.0 82 4-85 70-154 (165)
145 2ki2_A SS-DNA binding protein 99.8 3E-20 1E-24 128.7 5.0 78 7-85 2-82 (90)
146 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.4E-19 8.4E-24 134.7 10.3 77 4-80 61-140 (140)
147 2jwn_A Embryonic polyadenylate 99.8 2.9E-19 9.8E-24 131.4 10.3 79 5-84 35-116 (124)
148 1x4b_A Heterogeneous nuclear r 99.8 3E-19 1E-23 129.7 10.3 80 5-85 26-108 (116)
149 1wg1_A KIAA1579 protein, homol 99.8 1.3E-19 4.5E-24 124.8 8.0 78 3-84 2-79 (88)
150 1x5o_A RNA binding motif, sing 99.8 2.2E-19 7.6E-24 130.0 9.5 80 4-83 23-112 (114)
151 3egn_A RNA-binding protein 40; 99.8 9.3E-20 3.2E-24 137.5 7.7 82 3-84 42-131 (143)
152 2cpy_A RNA-binding protein 12; 99.8 1.4E-19 4.9E-24 130.9 8.1 79 4-83 13-94 (114)
153 1x5p_A Negative elongation fac 99.8 7.5E-19 2.6E-23 123.3 11.4 77 4-85 13-89 (97)
154 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-19 5.6E-24 127.6 7.9 79 4-84 13-93 (102)
155 2e5g_A U6 snRNA-specific termi 99.8 5.6E-19 1.9E-23 123.2 10.4 79 4-85 6-84 (94)
156 3beg_B Splicing factor, argini 99.8 1.4E-19 4.9E-24 131.0 7.7 75 4-82 14-93 (115)
157 2i2y_A Fusion protein consists 99.8 2.7E-19 9.2E-24 136.0 9.2 78 4-83 71-148 (150)
158 3zzy_A Polypyrimidine tract-bi 99.8 4.5E-19 1.5E-23 129.2 9.9 77 7-85 29-108 (130)
159 2db1_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 131.2 7.5 78 4-82 15-97 (118)
160 2e44_A Insulin-like growth fac 99.8 5.3E-19 1.8E-23 123.9 9.6 80 4-84 13-93 (96)
161 1fj7_A Nucleolin RBD1, protein 99.8 5.3E-20 1.8E-24 130.3 4.4 80 4-84 15-96 (101)
162 1sjr_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 133.2 10.4 78 6-84 46-125 (164)
163 2f3j_A RNA and export factor b 99.8 4.6E-19 1.6E-23 138.0 9.9 81 4-84 86-168 (177)
164 1iqt_A AUF1, heterogeneous nuc 99.8 1.7E-19 5.7E-24 120.4 6.2 72 8-80 1-75 (75)
165 3q2s_C Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 144.6 8.9 78 5-82 67-149 (229)
166 2hgl_A HNRPF protein, heteroge 99.8 2.7E-19 9.3E-24 132.6 7.6 78 4-82 42-124 (136)
167 2e5i_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 126.4 10.4 77 5-84 22-103 (124)
168 1wel_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 130.2 7.8 78 4-82 23-103 (124)
169 2dnn_A RNA-binding protein 12; 99.8 1.3E-18 4.5E-23 124.0 9.6 75 6-82 16-92 (109)
170 2lmi_A GRSF-1, G-rich sequence 99.8 3.1E-19 1.1E-23 127.6 6.0 79 3-82 8-91 (107)
171 3d2w_A TAR DNA-binding protein 99.8 1.9E-18 6.4E-23 119.0 9.2 76 3-84 8-85 (89)
172 2hgn_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 132.1 5.7 80 4-85 44-125 (139)
173 3beg_B Splicing factor, argini 99.8 1.9E-18 6.6E-23 125.0 9.0 81 106-189 13-94 (115)
174 2hzc_A Splicing factor U2AF 65 99.8 1.7E-18 5.8E-23 119.0 8.3 73 3-79 3-86 (87)
175 2lcw_A RNA-binding protein FUS 99.6 4.5E-20 1.5E-24 134.1 0.0 83 3-85 4-97 (116)
176 2dha_A FLJ20171 protein; RRM d 99.8 4.8E-19 1.6E-23 128.9 5.4 77 4-81 21-103 (123)
177 2bz2_A Negative elongation fac 99.8 3.5E-18 1.2E-22 124.5 9.4 76 4-84 37-112 (121)
178 2hgm_A HNRPF protein, heteroge 99.8 2.2E-18 7.5E-23 125.7 8.2 77 4-82 40-120 (126)
179 1wf0_A TDP-43, TAR DNA-binding 99.8 2E-18 6.9E-23 118.9 7.5 79 3-85 2-80 (88)
180 1x4c_A Splicing factor, argini 99.8 3.7E-17 1.3E-21 116.9 14.4 83 104-189 10-93 (108)
181 2xs2_A Deleted in azoospermia- 99.7 1.4E-18 4.7E-23 123.2 6.0 79 4-84 7-87 (102)
182 2pe8_A Splicing factor 45; RRM 99.7 9.4E-18 3.2E-22 118.8 9.5 80 3-82 5-93 (105)
183 2dnl_A Cytoplasmic polyadenyla 99.7 7.7E-18 2.6E-22 121.7 9.3 75 3-80 5-85 (114)
184 4f02_A Polyadenylate-binding p 99.7 8E-18 2.7E-22 135.5 9.3 79 5-83 102-181 (213)
185 2j8a_A Histone-lysine N-methyl 99.7 7.6E-18 2.6E-22 120.3 7.3 76 7-82 3-95 (136)
186 3md3_A Nuclear and cytoplasmic 99.7 1.8E-17 6E-22 128.0 9.9 78 4-81 85-165 (166)
187 2qfj_A FBP-interacting repress 99.7 2.1E-17 7.2E-22 133.2 10.8 82 4-85 123-207 (216)
188 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.9E-17 1.7E-21 125.4 11.9 136 50-189 11-152 (165)
189 3u1l_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.8E-22 133.8 7.9 78 4-84 132-230 (240)
190 2dit_A HIV TAT specific factor 99.7 6.4E-17 2.2E-21 116.4 9.9 81 4-85 13-104 (112)
191 2g4b_A Splicing factor U2AF 65 99.7 3E-17 1E-21 127.5 8.8 77 5-81 93-172 (172)
192 2yh0_A Splicing factor U2AF 65 99.7 4.5E-17 1.5E-21 129.5 9.9 81 4-84 112-195 (198)
193 1fje_B Nucleolin RBD12, protei 99.7 2.8E-17 9.7E-22 128.1 8.3 78 4-83 97-174 (175)
194 2cjk_A Nuclear polyadenylated 99.7 3.3E-17 1.1E-21 126.6 8.5 78 5-83 86-166 (167)
195 4fxv_A ELAV-like protein 1; RN 99.7 2.4E-16 8.1E-21 110.7 11.7 78 107-188 17-98 (99)
196 2lea_A Serine/arginine-rich sp 99.7 4.8E-17 1.6E-21 121.0 7.3 120 45-189 4-127 (135)
197 1l3k_A Heterogeneous nuclear r 99.7 1.2E-16 4.1E-21 126.8 9.9 81 5-86 103-186 (196)
198 3nmr_A Cugbp ELAV-like family 99.7 9.1E-17 3.1E-21 125.1 8.9 77 5-81 94-175 (175)
199 1b7f_A Protein (SXL-lethal pro 99.7 1.2E-16 4.1E-21 123.6 9.5 77 4-80 87-168 (168)
200 2voo_A Lupus LA protein; RNA-b 99.7 1.5E-16 5E-21 125.6 9.8 78 6-84 109-188 (193)
201 2jvr_A Nucleolar protein 3; RN 99.7 2E-16 6.7E-21 112.9 9.2 80 106-189 25-105 (111)
202 3v4m_A Splicing factor U2AF 65 99.7 1.9E-16 6.6E-21 112.1 8.4 79 3-81 2-95 (105)
203 3pgw_A U1-A; protein-RNA compl 99.7 3.1E-16 1.1E-20 131.7 10.9 76 4-81 205-281 (282)
204 1fxl_A Paraneoplastic encephal 99.7 2.6E-16 8.8E-21 121.5 9.2 76 5-80 87-167 (167)
205 2wbr_A GW182, gawky, LD47780P; 99.6 1.5E-15 5.1E-20 101.7 10.5 73 108-186 6-78 (89)
206 1qm9_A Polypyrimidine tract-bi 99.6 3.2E-16 1.1E-20 124.6 8.6 78 4-83 118-197 (198)
207 2fy1_A RNA-binding motif prote 99.6 2.5E-15 8.5E-20 108.7 12.3 80 106-189 4-86 (116)
208 2cqi_A Nucleolysin TIAR; RNA r 99.6 8.3E-15 2.8E-19 103.7 14.8 83 104-190 10-94 (103)
209 2adc_A Polypyrimidine tract-bi 99.6 6.7E-16 2.3E-20 125.6 10.3 77 5-83 150-228 (229)
210 4f25_A Polyadenylate-binding p 99.6 1.9E-15 6.5E-20 109.2 11.3 78 108-189 4-83 (115)
211 1x4a_A Splicing factor, argini 99.6 5E-15 1.7E-19 106.0 13.3 83 104-190 17-100 (109)
212 1sjq_A Polypyrimidine tract-bi 99.6 2.4E-15 8.3E-20 105.4 10.9 78 106-189 13-92 (105)
213 3ex7_B RNA-binding protein 8A; 99.6 1.3E-15 4.5E-20 112.0 10.1 81 105-189 18-102 (126)
214 3tyt_A Heterogeneous nuclear r 99.6 3.7E-16 1.3E-20 124.7 7.5 76 5-80 122-204 (205)
215 2cq3_A RNA-binding protein 9; 99.6 9.3E-15 3.2E-19 103.5 13.9 83 104-190 10-94 (103)
216 2dnm_A SRP46 splicing factor; 99.6 2.9E-15 9.9E-20 106.1 11.0 85 102-190 6-94 (103)
217 3s8s_A Histone-lysine N-methyl 99.6 4.3E-15 1.5E-19 106.2 11.9 78 107-188 4-85 (110)
218 2dgt_A RNA-binding protein 30; 99.6 7.5E-15 2.6E-19 101.7 12.8 79 104-190 5-83 (92)
219 3ue2_A Poly(U)-binding-splicin 99.6 5.5E-16 1.9E-20 111.8 6.9 78 4-81 18-107 (118)
220 2dgx_A KIAA0430 protein; RRM d 99.6 6.9E-15 2.3E-19 102.7 12.3 81 106-190 6-91 (96)
221 2d9p_A Polyadenylate-binding p 99.6 4.4E-15 1.5E-19 105.1 11.5 83 104-190 10-94 (103)
222 2dnq_A RNA-binding protein 4B; 99.6 8E-15 2.7E-19 101.1 12.2 77 106-190 5-81 (90)
223 2dgo_A Cytotoxic granule-assoc 99.6 3.1E-14 1.1E-18 102.9 15.8 83 104-190 10-96 (115)
224 1x5s_A Cold-inducible RNA-bind 99.6 6.1E-15 2.1E-19 104.2 11.8 81 105-189 8-92 (102)
225 2cq0_A Eukaryotic translation 99.6 7.7E-15 2.6E-19 103.9 12.2 82 105-190 11-96 (103)
226 1wf1_A RNA-binding protein RAL 99.6 3.4E-15 1.2E-19 107.1 10.4 76 106-189 24-100 (110)
227 1whw_A Hypothetical protein ri 99.6 9E-15 3.1E-19 102.7 12.3 82 106-191 5-90 (99)
228 2dgs_A DAZ-associated protein 99.6 9.1E-15 3.1E-19 102.7 12.1 82 104-190 5-90 (99)
229 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.6E-15 1.9E-19 104.4 10.9 81 106-190 9-93 (102)
230 3tht_A Alkylated DNA repair pr 99.6 1.6E-15 5.5E-20 128.8 9.4 77 2-81 14-97 (345)
231 2cpz_A CUG triplet repeat RNA- 99.6 2.1E-14 7.3E-19 103.7 14.1 81 106-190 22-106 (115)
232 2dnz_A Probable RNA-binding pr 99.6 1E-14 3.5E-19 101.6 11.9 80 107-190 3-86 (95)
233 4a8x_A RNA-binding protein wit 99.6 6.8E-15 2.3E-19 101.0 10.7 77 109-189 4-85 (88)
234 2dgu_A Heterogeneous nuclear r 99.6 2.7E-14 9.2E-19 101.0 14.0 77 106-190 8-84 (103)
235 2cqc_A Arginine/serine-rich sp 99.6 1.6E-14 5.4E-19 100.6 12.6 81 103-187 9-93 (95)
236 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.1E-14 3.8E-19 101.7 11.6 77 5-85 9-92 (100)
237 2cpf_A RNA binding motif prote 99.6 1E-14 3.5E-19 102.2 11.6 80 107-190 3-89 (98)
238 1x4d_A Matrin 3; structural ge 99.6 4.2E-15 1.4E-19 104.2 9.5 78 106-189 12-92 (102)
239 2dnp_A RNA-binding protein 14; 99.6 1.4E-14 4.6E-19 99.9 12.0 76 106-189 6-81 (90)
240 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-14 3.8E-19 101.9 11.5 80 105-189 15-94 (97)
241 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.2E-14 4.1E-19 99.5 11.4 78 107-188 4-85 (87)
242 2cph_A RNA binding motif prote 99.6 1.8E-14 6.3E-19 102.7 12.6 83 104-190 10-98 (107)
243 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.1E-14 3.7E-19 99.3 10.9 77 106-186 4-84 (85)
244 1x4g_A Nucleolysin TIAR; struc 99.6 2E-14 6.8E-19 102.8 12.6 79 106-190 22-100 (109)
245 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-14 4.7E-19 102.8 11.7 82 104-191 10-96 (104)
246 2do0_A HnRNP M, heterogeneous 99.6 7.1E-14 2.4E-18 100.8 15.6 81 105-189 11-94 (114)
247 3r27_A HnRNP L, heterogeneous 99.6 1.2E-14 4.1E-19 100.9 10.9 78 106-189 18-97 (100)
248 1x5u_A Splicing factor 3B subu 99.6 1.9E-14 6.4E-19 102.3 12.2 82 104-189 10-95 (105)
249 2do4_A Squamous cell carcinoma 99.6 2.4E-14 8.4E-19 100.7 12.6 81 105-189 13-96 (100)
250 1jmt_A Splicing factor U2AF 35 99.6 3.5E-16 1.2E-20 110.6 3.0 69 12-80 21-103 (104)
251 2dng_A Eukaryotic translation 99.6 2.9E-14 1E-18 100.9 12.9 81 104-190 10-94 (103)
252 2e5h_A Zinc finger CCHC-type a 99.6 1.4E-14 4.7E-19 100.8 11.0 81 102-186 9-93 (94)
253 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.5E-19 102.6 12.0 80 103-186 23-105 (107)
254 1x4h_A RNA-binding protein 28; 99.6 3.4E-14 1.1E-18 102.0 13.1 83 104-190 10-102 (111)
255 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-14 6.8E-19 102.3 11.8 82 105-190 9-97 (106)
256 2ywk_A Putative RNA-binding pr 99.6 1.8E-14 6E-19 100.4 11.2 80 104-187 11-93 (95)
257 2hvz_A Splicing factor, argini 99.6 1.3E-14 4.4E-19 102.3 10.6 75 110-189 1-75 (101)
258 2x1f_A MRNA 3'-END-processing 99.6 1.6E-14 5.6E-19 100.8 11.0 77 109-189 2-82 (96)
259 1x5t_A Splicing factor 3B subu 99.6 1.2E-14 4.2E-19 101.5 10.3 80 107-190 3-87 (96)
260 3md1_A Nuclear and cytoplasmic 99.6 2.4E-14 8.4E-19 97.0 11.3 76 110-189 2-81 (83)
261 1why_A Hypothetical protein ri 99.6 1.3E-14 4.5E-19 101.5 10.1 78 106-189 14-93 (97)
262 2cq1_A PTB-like protein L; RRM 99.6 5E-14 1.7E-18 98.8 13.0 78 106-189 12-91 (101)
263 2div_A TRNA selenocysteine ass 99.6 2.2E-14 7.6E-19 100.7 11.3 84 106-189 6-94 (99)
264 2jvo_A Nucleolar protein 3; nu 99.6 1.3E-14 4.6E-19 103.4 10.2 79 104-190 26-104 (108)
265 2ad9_A Polypyrimidine tract-bi 99.6 1.7E-14 5.7E-19 103.8 10.7 78 106-189 28-107 (119)
266 1wex_A Hypothetical protein (r 99.6 3.4E-14 1.2E-18 100.2 11.9 78 106-189 12-91 (104)
267 2dgv_A HnRNP M, heterogeneous 99.6 2.9E-14 9.9E-19 98.7 11.4 80 106-189 5-86 (92)
268 2cpd_A Apobec-1 stimulating pr 99.6 8.3E-14 2.8E-18 97.8 13.8 77 106-190 12-90 (99)
269 2cpi_A CCR4-NOT transcription 99.6 1.8E-14 6.1E-19 103.4 10.3 81 106-190 12-102 (111)
270 2e44_A Insulin-like growth fac 99.6 2.7E-14 9.3E-19 99.7 10.8 81 105-189 11-92 (96)
271 2lxi_A RNA-binding protein 10; 99.6 6.1E-15 2.1E-19 101.8 7.2 77 110-190 2-84 (91)
272 1u6f_A Tcubp1, RNA-binding pro 99.6 9.3E-14 3.2E-18 103.9 14.3 83 104-190 37-123 (139)
273 2dhg_A TRNA selenocysteine ass 99.6 4.7E-14 1.6E-18 100.0 12.0 80 106-189 6-90 (104)
274 1p27_B RNA-binding protein 8A; 99.6 3.3E-14 1.1E-18 101.1 11.2 80 106-189 20-103 (106)
275 3s6e_A RNA-binding protein 39; 99.6 1.3E-14 4.4E-19 103.9 9.0 77 4-81 5-91 (114)
276 3sde_A Paraspeckle component 1 99.6 8.5E-15 2.9E-19 121.4 9.3 81 4-84 94-180 (261)
277 2kxn_B Transformer-2 protein h 99.6 2.1E-14 7.2E-19 105.7 10.1 82 104-189 41-126 (129)
278 2cpj_A Non-POU domain-containi 99.6 4.3E-14 1.5E-18 99.2 11.1 78 106-189 12-89 (99)
279 1sjr_A Polypyrimidine tract-bi 99.6 2.8E-14 9.5E-19 107.8 10.7 82 106-189 43-124 (164)
280 2la6_A RNA-binding protein FUS 99.6 4.5E-14 1.5E-18 99.1 11.2 79 104-186 8-98 (99)
281 2cpe_A RNA-binding protein EWS 99.6 5.9E-14 2E-18 101.1 11.9 81 106-190 12-104 (113)
282 2xnq_A Nuclear polyadenylated 99.6 5.3E-14 1.8E-18 98.3 11.3 78 104-189 17-95 (97)
283 2dnh_A Bruno-like 5, RNA bindi 99.6 8.5E-14 2.9E-18 98.8 12.6 83 106-189 12-97 (105)
284 2fc9_A NCL protein; structure 99.6 2.4E-14 8E-19 101.0 9.5 82 105-190 11-92 (101)
285 2cqh_A IGF-II mRNA-binding pro 99.6 2.3E-14 7.9E-19 99.4 9.3 78 106-190 5-84 (93)
286 2lkz_A RNA-binding protein 5; 99.6 1.2E-14 4.2E-19 100.8 7.8 79 106-188 6-94 (95)
287 1oo0_B CG8781-PA, drosophila Y 99.5 4.6E-14 1.6E-18 101.1 11.2 80 106-189 23-106 (110)
288 2jrs_A RNA-binding protein 39; 99.5 8.7E-14 3E-18 99.2 12.4 82 104-189 21-106 (108)
289 2ytc_A PRE-mRNA-splicing facto 99.5 4.8E-14 1.6E-18 96.0 10.6 76 105-186 8-84 (85)
290 2err_A Ataxin-2-binding protei 99.5 2.8E-14 9.7E-19 102.0 9.8 82 104-189 24-107 (109)
291 2la4_A Nuclear and cytoplasmic 99.5 3.5E-14 1.2E-18 100.1 10.1 76 107-188 25-100 (101)
292 2dh8_A DAZ-associated protein 99.5 8.4E-14 2.9E-18 98.8 12.1 82 104-190 11-96 (105)
293 2cpx_A Hypothetical protein FL 99.5 7.2E-14 2.5E-18 100.9 11.7 81 106-190 22-106 (115)
294 2cqp_A RNA-binding protein 12; 99.5 4E-14 1.4E-18 99.2 9.7 81 105-189 11-95 (98)
295 2kt5_A RNA and export factor-b 99.5 9.6E-14 3.3E-18 101.7 12.2 83 103-189 29-114 (124)
296 2dgw_A Probable RNA-binding pr 99.5 1E-13 3.4E-18 95.7 11.5 80 104-189 5-87 (91)
297 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.2E-13 4E-18 105.4 13.0 80 106-189 36-119 (156)
298 2kvi_A Nuclear polyadenylated 99.5 3.1E-14 1E-18 99.4 8.4 76 106-189 7-83 (96)
299 1whx_A Hypothetical protein ri 99.5 2.1E-14 7E-19 103.0 7.7 76 107-188 8-83 (111)
300 2khc_A Testis-specific RNP-typ 99.5 8.8E-14 3E-18 100.9 10.9 78 105-186 36-117 (118)
301 3p5t_L Cleavage and polyadenyl 99.5 1.7E-14 5.8E-19 99.4 6.7 76 110-189 2-83 (90)
302 1x5p_A Negative elongation fac 99.5 3E-13 1E-17 94.5 13.0 77 106-190 12-88 (97)
303 2cqd_A RNA-binding region cont 99.5 2.3E-13 7.8E-18 98.4 12.6 81 104-189 12-96 (116)
304 2a3j_A U1 small nuclear ribonu 99.5 7.6E-14 2.6E-18 102.0 10.0 80 106-189 26-110 (127)
305 3ucg_A Polyadenylate-binding p 99.5 1.5E-13 5E-18 94.5 10.8 76 109-189 6-85 (89)
306 3s7r_A Heterogeneous nuclear r 99.5 1.3E-13 4.4E-18 94.3 10.5 75 106-185 8-86 (87)
307 1x4e_A RNA binding motif, sing 99.5 1.2E-14 4E-19 99.1 5.1 68 107-174 3-74 (85)
308 3lqv_A PRE-mRNA branch site pr 99.5 1E-13 3.6E-18 100.1 10.4 80 106-189 5-85 (115)
309 1s79_A Lupus LA protein; RRM, 99.5 5.9E-14 2E-18 99.0 8.5 75 106-185 8-85 (103)
310 3n9u_C Cleavage and polyadenyl 99.5 1.5E-13 5.1E-18 104.4 11.2 76 108-187 54-135 (156)
311 2jwn_A Embryonic polyadenylate 99.5 1.6E-13 5.6E-18 100.4 11.0 77 108-189 35-115 (124)
312 2cqg_A TDP-43, TAR DNA-binding 99.5 7.6E-13 2.6E-17 93.5 14.1 80 104-189 10-93 (103)
313 3zzy_A Polypyrimidine tract-bi 99.5 2.1E-13 7.3E-18 99.2 11.3 81 106-189 25-106 (130)
314 2e5i_A Heterogeneous nuclear r 99.5 5.7E-13 2E-17 96.5 13.6 78 108-189 24-102 (124)
315 2ek1_A RNA-binding protein 12; 99.5 4.4E-14 1.5E-18 98.4 7.4 78 106-187 12-93 (95)
316 1wez_A HnRNP H', FTP-3, hetero 99.5 1.1E-13 3.6E-18 97.6 9.1 80 104-189 10-92 (102)
317 2dnn_A RNA-binding protein 12; 99.5 1.1E-13 3.9E-18 98.3 9.1 76 106-187 13-91 (109)
318 1x4b_A Heterogeneous nuclear r 99.5 1.8E-13 6.1E-18 99.0 10.3 79 107-190 25-107 (116)
319 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.5E-13 8.4E-18 101.7 11.4 80 102-185 56-139 (140)
320 1nu4_A U1A RNA binding domain; 99.5 9.8E-14 3.3E-18 97.0 8.5 80 106-189 5-89 (97)
321 1x4f_A Matrin 3; structural ge 99.5 3.5E-14 1.2E-18 101.0 6.1 78 106-189 22-102 (112)
322 2diu_A KIAA0430 protein; struc 99.5 1.9E-13 6.4E-18 92.4 9.3 73 108-190 8-85 (96)
323 1wg5_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 97.8 8.9 80 103-187 9-92 (104)
324 2cq4_A RNA binding motif prote 99.5 1.7E-13 5.9E-18 98.7 9.8 78 107-189 23-104 (114)
325 1p1t_A Cleavage stimulation fa 99.5 1.3E-13 4.5E-18 97.6 8.9 79 107-189 6-88 (104)
326 2cq2_A Hypothetical protein LO 99.5 1.3E-13 4.3E-18 98.1 8.6 80 107-188 23-105 (114)
327 2hgn_A Heterogeneous nuclear r 99.5 1.2E-14 4.1E-19 107.9 3.4 119 46-189 2-123 (139)
328 3ns6_A Eukaryotic translation 99.5 1.2E-13 4.2E-18 97.0 8.4 77 107-186 4-90 (100)
329 1fjc_A Nucleolin RBD2, protein 99.5 9.3E-14 3.2E-18 96.9 7.7 79 106-189 13-91 (96)
330 2e5g_A U6 snRNA-specific termi 99.5 4E-13 1.4E-17 93.3 10.7 75 108-189 7-82 (94)
331 2db1_A Heterogeneous nuclear r 99.5 1.7E-13 5.8E-18 99.3 9.0 79 104-187 12-96 (118)
332 2fc8_A NCL protein; structure 99.5 6.3E-13 2.2E-17 93.7 11.7 80 104-190 10-93 (102)
333 1x5o_A RNA binding motif, sing 99.5 5.7E-13 2E-17 96.0 11.6 83 106-188 22-111 (114)
334 2krb_A Eukaryotic translation 99.5 5.1E-14 1.7E-18 95.0 5.6 66 110-175 2-75 (81)
335 2hgl_A HNRPF protein, heteroge 99.5 1.2E-13 4E-18 102.2 8.0 80 103-187 38-123 (136)
336 2nlw_A Eukaryotic translation 99.5 1.6E-13 5.5E-18 97.3 8.4 80 106-189 12-100 (105)
337 2m2b_A RNA-binding protein 10; 99.5 2E-13 6.7E-18 101.0 9.0 79 106-189 20-108 (131)
338 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.1E-14 1.7E-18 99.0 4.8 80 104-189 14-98 (100)
339 2rs2_A Musashi-1, RNA-binding 99.5 4E-13 1.4E-17 95.9 9.5 79 106-189 22-104 (109)
340 2hzc_A Splicing factor U2AF 65 99.4 4.7E-13 1.6E-17 91.5 9.3 71 107-184 4-85 (87)
341 2mss_A Protein (musashi1); RNA 99.4 1.2E-13 4.2E-18 91.6 6.1 70 111-185 1-74 (75)
342 2dis_A Unnamed protein product 99.4 5E-13 1.7E-17 95.5 9.8 80 107-190 6-93 (109)
343 2cpy_A RNA-binding protein 12; 99.4 2.3E-13 7.7E-18 98.1 8.0 79 105-188 11-93 (114)
344 2f3j_A RNA and export factor b 99.4 5.1E-13 1.7E-17 103.7 10.5 80 104-187 83-165 (177)
345 1wg1_A KIAA1579 protein, homol 99.4 2.3E-13 7.7E-18 93.3 7.4 74 108-188 4-77 (88)
346 1uaw_A Mouse-musashi-1; RNP-ty 99.4 1.2E-13 4.2E-18 92.1 5.5 71 110-185 1-75 (77)
347 1owx_A Lupus LA protein, SS-B, 99.4 7.8E-13 2.7E-17 94.6 9.9 75 4-81 16-94 (121)
348 3d2w_A TAR DNA-binding protein 99.4 1.1E-12 3.6E-17 90.0 9.6 78 105-189 7-84 (89)
349 3q2s_C Cleavage and polyadenyl 99.4 4.2E-13 1.4E-17 108.6 8.6 76 108-187 67-148 (229)
350 1fj7_A Nucleolin RBD1, protein 99.4 7.5E-13 2.6E-17 93.2 8.8 78 106-189 14-95 (101)
351 2ki2_A SS-DNA binding protein 99.4 9.6E-14 3.3E-18 95.6 4.0 74 110-188 2-79 (90)
352 3egn_A RNA-binding protein 40; 99.4 1E-12 3.5E-17 98.6 9.9 80 106-189 42-130 (143)
353 1wel_A RNA-binding protein 12; 99.4 2.8E-13 9.7E-18 99.1 6.4 79 104-187 20-102 (124)
354 2bz2_A Negative elongation fac 99.4 1E-12 3.4E-17 95.5 9.3 76 106-189 36-111 (121)
355 2lmi_A GRSF-1, G-rich sequence 99.4 2.3E-13 7.9E-18 96.9 5.2 78 105-187 7-90 (107)
356 2hgm_A HNRPF protein, heteroge 99.4 8.6E-13 2.9E-17 96.0 7.0 77 104-186 37-118 (126)
357 2dha_A FLJ20171 protein; RRM d 99.4 8.1E-13 2.8E-17 95.9 6.8 75 107-186 21-102 (123)
358 2dnr_A Synaptojanin-1; RRM dom 99.4 2E-12 6.7E-17 86.6 7.8 74 4-83 5-86 (91)
359 1iqt_A AUF1, heterogeneous nuc 99.4 4.4E-13 1.5E-17 88.9 4.6 64 111-175 1-68 (75)
360 2xs2_A Deleted in azoospermia- 99.4 2E-12 6.9E-17 91.1 7.6 76 106-187 6-84 (102)
361 2dit_A HIV TAT specific factor 99.4 1.4E-11 4.9E-16 88.2 12.2 81 105-189 11-102 (112)
362 2lcw_A RNA-binding protein FUS 99.0 7.5E-14 2.6E-18 101.0 0.0 80 107-190 5-96 (116)
363 1wf0_A TDP-43, TAR DNA-binding 99.3 1.2E-12 4.1E-17 89.6 6.1 74 108-190 4-79 (88)
364 2pe8_A Splicing factor 45; RRM 99.3 1.5E-11 5E-16 86.8 10.8 77 107-187 6-92 (105)
365 2voo_A Lupus LA protein; RNA-b 99.3 3.7E-11 1.3E-15 94.6 13.4 119 54-188 63-186 (193)
366 2j8a_A Histone-lysine N-methyl 99.3 8.2E-12 2.8E-16 89.3 8.3 74 110-187 3-94 (136)
367 3u1l_A PRE-mRNA-splicing facto 99.3 9.9E-12 3.4E-16 100.2 8.5 78 106-189 131-229 (240)
368 2dnl_A Cytoplasmic polyadenyla 99.3 9.4E-12 3.2E-16 89.5 7.2 61 107-168 6-73 (114)
369 3s6e_A RNA-binding protein 39; 99.2 1E-10 3.4E-15 83.6 9.5 76 107-186 5-90 (114)
370 3v4m_A Splicing factor U2AF 65 99.2 7.8E-11 2.7E-15 83.1 8.7 75 108-186 4-94 (105)
371 3ue2_A Poly(U)-binding-splicin 99.2 1.1E-10 3.8E-15 83.9 9.3 75 108-186 19-106 (118)
372 1ufw_A Synaptojanin 2; RNP dom 99.2 3.1E-11 1.1E-15 81.1 5.8 72 4-81 13-93 (95)
373 3tht_A Alkylated DNA repair pr 99.1 1.1E-10 3.7E-15 99.2 8.2 66 106-173 15-82 (345)
374 1jmt_A Splicing factor U2AF 35 99.1 5.9E-11 2E-15 83.6 3.9 68 114-185 20-102 (104)
375 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.2E-09 7.4E-14 74.7 11.7 64 119-189 27-90 (100)
376 3dxb_A Thioredoxin N-terminall 99.0 3.4E-10 1.2E-14 91.3 7.4 76 6-81 124-211 (222)
377 1owx_A Lupus LA protein, SS-B, 99.0 8.1E-10 2.8E-14 79.0 8.4 71 104-176 13-87 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.9 1.1E-08 3.7E-13 70.1 8.8 72 5-79 20-96 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.9 6.2E-09 2.1E-13 69.6 7.5 73 108-189 6-86 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 2.7E-08 9.2E-13 66.9 6.8 71 107-186 13-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 2.8E-07 9.6E-12 62.7 11.1 89 4-122 6-99 (104)
382 1wey_A Calcipressin 1; structu 98.5 2.4E-07 8.3E-12 63.3 6.9 76 5-83 4-84 (104)
383 3dxb_A Thioredoxin N-terminall 98.4 8.1E-07 2.8E-11 71.3 7.3 61 122-186 142-210 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.3 4.7E-06 1.6E-10 57.1 9.2 71 108-184 20-95 (117)
385 1uw4_A UPF3X; nonsense mediate 98.3 8.7E-06 3E-10 54.8 9.2 65 7-71 2-71 (91)
386 1wwh_A Nucleoporin 35, nucleop 98.2 9.2E-06 3.2E-10 57.2 8.6 72 5-81 23-95 (119)
387 1whv_A Poly(A)-specific ribonu 98.0 2E-05 6.7E-10 52.9 6.6 55 6-66 16-70 (100)
388 3ctr_A Poly(A)-specific ribonu 97.9 2.2E-05 7.7E-10 52.8 5.2 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.8 8.5E-05 2.9E-09 50.2 6.7 77 5-81 8-94 (97)
390 3p3d_A Nucleoporin 53; structu 97.8 3.6E-05 1.2E-09 54.9 5.0 76 4-81 5-97 (132)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.0011 3.7E-08 46.7 9.3 67 106-176 21-87 (119)
392 1uw4_A UPF3X; nonsense mediate 97.5 0.0011 3.6E-08 44.5 8.9 68 110-177 2-75 (91)
393 1whv_A Poly(A)-specific ribonu 97.4 0.0011 3.8E-08 44.5 8.5 58 106-168 13-70 (100)
394 1wey_A Calcipressin 1; structu 97.4 0.00075 2.6E-08 46.1 7.7 73 109-187 5-82 (104)
395 3pq1_A Poly(A) RNA polymerase; 97.2 0.00024 8.4E-09 62.4 3.9 56 5-63 52-107 (464)
396 2dhx_A Poly (ADP-ribose) polym 97.1 0.0022 7.7E-08 43.6 7.6 56 107-166 6-66 (104)
397 3ctr_A Poly(A)-specific ribonu 96.9 0.0026 8.8E-08 42.9 5.8 53 111-168 8-60 (101)
398 2l08_A Regulator of nonsense t 96.1 0.01 3.5E-07 40.0 5.2 69 109-177 9-83 (97)
399 3p3d_A Nucleoporin 53; structu 95.7 0.018 6.3E-07 41.0 5.2 67 108-176 6-90 (132)
400 3d45_A Poly(A)-specific ribonu 94.3 0.085 2.9E-06 47.3 6.9 55 7-67 441-495 (507)
401 3pq1_A Poly(A) RNA polymerase; 94.2 0.027 9.1E-07 49.6 3.3 55 109-165 53-107 (464)
402 2g0c_A ATP-dependent RNA helic 93.3 0.32 1.1E-05 31.0 6.5 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 90.3 2.6 8.9E-05 27.5 8.3 69 4-79 10-78 (129)
404 3d45_A Poly(A)-specific ribonu 85.4 2.5 8.6E-05 37.8 7.7 56 109-169 440-495 (507)
405 4e8u_A Putative uncharacterize 78.8 3.2 0.00011 31.0 4.8 56 8-63 14-81 (172)
406 3j21_T 50S ribosomal protein L 73.0 17 0.00057 23.7 6.6 55 9-63 25-81 (86)
407 4eyt_A Telomerase associated p 69.7 20 0.00068 23.3 8.2 58 106-167 9-66 (129)
408 1vq8_S 50S ribosomal protein L 67.2 19 0.00063 23.4 5.8 55 9-63 24-80 (85)
409 3lpe_A Putative transcription 59.9 34 0.0011 22.4 6.5 34 32-67 39-72 (92)
410 3ts2_A Protein LIN-28 homolog 59.5 1.5 5.1E-05 32.1 -0.6 29 21-54 2-30 (148)
411 4a17_R RPL23A, 60S ribosomal p 53.4 35 0.0012 24.7 5.7 54 10-63 90-145 (150)
412 3fut_A Dimethyladenosine trans 53.3 11 0.00038 30.5 3.6 47 7-68 111-157 (271)
413 2zkr_s 60S ribosomal protein L 52.9 39 0.0013 24.7 6.0 55 9-63 95-151 (156)
414 2f06_A Conserved hypothetical 52.3 59 0.002 22.9 15.1 112 20-172 20-135 (144)
415 2e5p_A Protein PHF1, PHD finge 50.8 7.2 0.00025 23.8 1.5 21 31-56 28-48 (68)
416 3u5e_X 60S ribosomal protein L 50.7 41 0.0014 24.1 5.7 54 10-63 82-137 (142)
417 3uzu_A Ribosomal RNA small sub 49.2 6.3 0.00021 32.1 1.5 33 6-38 114-146 (279)
418 3iz5_X 60S ribosomal protein L 48.4 35 0.0012 24.8 5.1 54 10-63 92-147 (152)
419 2cu1_A Mitogen-activated prote 45.6 58 0.002 21.7 5.3 66 13-84 23-89 (103)
420 2eqj_A Metal-response element- 44.2 11 0.00039 23.0 1.7 12 44-55 40-51 (66)
421 2m0o_A PHD finger protein 1; t 44.1 10 0.00036 23.8 1.5 21 31-56 45-65 (79)
422 3h7h_B Transcription elongatio 41.0 39 0.0013 22.9 4.2 35 32-68 40-74 (106)
423 1qyr_A KSGA, high level kasuga 39.8 19 0.00066 28.7 3.0 29 7-35 91-119 (252)
424 3ftd_A Dimethyladenosine trans 39.6 17 0.00058 28.9 2.6 32 7-38 96-127 (249)
425 3tqs_A Ribosomal RNA small sub 38.8 8.4 0.00029 30.9 0.7 31 8-38 98-128 (255)
426 2e5q_A PHD finger protein 19; 38.5 5.9 0.0002 23.8 -0.2 13 44-56 34-46 (63)
427 2cs4_A Protein C12ORF2; GTP bi 38.3 19 0.00065 23.9 2.2 23 11-33 21-44 (95)
428 3fry_A Probable copper-exporti 37.0 67 0.0023 19.2 5.8 54 110-166 7-60 (73)
429 1i4w_A Mitochondrial replicati 36.1 23 0.00078 29.9 3.0 23 7-29 143-165 (353)
430 3swz_A Steroid 17-alpha-hydrox 35.6 55 0.0019 28.4 5.6 60 8-74 16-79 (494)
431 2od0_A Hypothetical protein VP 35.4 33 0.0011 23.0 3.2 22 18-39 4-25 (105)
432 2gu3_A YPMB protein; APC1927, 35.2 44 0.0015 23.7 4.0 45 11-55 68-128 (136)
433 2ns6_A Mobilization protein A; 32.9 76 0.0026 23.9 5.1 46 10-55 74-127 (185)
434 1ytr_A Bacteriocin plantaricin 30.8 29 0.00098 16.0 1.5 14 18-31 12-25 (26)
435 4hcz_A PHD finger protein 1; p 30.8 26 0.00089 20.7 1.7 12 45-56 31-42 (58)
436 4bby_A Alkyldihydroxyacetoneph 30.4 40 0.0014 31.2 3.8 54 12-65 349-408 (658)
437 3j21_T 50S ribosomal protein L 30.4 1.1E+02 0.0038 19.7 6.7 55 112-166 25-82 (86)
438 1ik9_C DNA ligase IV; DNA END 30.1 38 0.0013 18.0 2.2 15 16-30 20-34 (37)
439 3tbg_A Cytochrome P450 2D6; mo 29.1 36 0.0012 29.3 3.2 55 10-71 20-77 (479)
440 3u5e_X 60S ribosomal protein L 28.7 1.6E+02 0.0055 21.0 6.6 56 111-166 80-138 (142)
441 4a17_R RPL23A, 60S ribosomal p 28.7 1.7E+02 0.0057 21.2 6.5 55 112-166 89-146 (150)
442 1eij_A Hypothetical protein MT 27.4 38 0.0013 21.6 2.2 20 12-31 50-69 (80)
443 2inr_A DNA topoisomerase 4 sub 27.1 1.3E+02 0.0044 26.8 6.2 60 6-65 275-339 (514)
444 2c60_A Human mitogen-activated 26.9 84 0.0029 21.0 3.8 61 13-79 46-107 (111)
445 2exu_A Transcription initiatio 24.8 66 0.0023 24.6 3.5 35 33-69 139-173 (200)
446 2npt_B Mitogen-activated prote 24.3 1.5E+02 0.0051 19.5 4.6 61 13-79 35-96 (100)
447 1nz8_A Transcription antitermi 23.9 1.7E+02 0.006 19.8 6.8 24 44-67 61-89 (119)
448 2kcm_A Cold shock domain famil 23.8 28 0.00097 21.8 1.1 38 45-82 12-54 (74)
449 1wvf_A 4-cresol dehydrogenase 23.5 54 0.0018 29.2 3.3 42 22-63 217-262 (520)
450 2jrh_A Mitogen-activated prote 23.0 1.6E+02 0.0055 19.1 5.1 65 13-83 19-84 (94)
451 2ki0_A DS119; beta-alpha-beta, 22.9 48 0.0017 16.5 1.6 18 5-27 4-21 (36)
452 3fjv_A Uncharacterized novel p 22.8 47 0.0016 25.2 2.3 48 18-69 65-112 (194)
453 3e6i_A CYPIIE1, P450-J, cytoch 22.4 81 0.0028 27.0 4.2 48 10-63 20-70 (476)
454 2fh0_A Hypothetical 16.0 kDa p 22.2 45 0.0015 21.4 1.8 19 12-30 48-66 (81)
455 3iz5_X 60S ribosomal protein L 21.8 1.7E+02 0.0059 21.2 5.0 54 112-165 91-147 (152)
456 2k5n_A Putative cold-shock pro 21.6 36 0.0012 21.3 1.3 37 45-81 14-52 (74)
457 2kpo_A Rossmann 2X2 fold prote 21.3 76 0.0026 20.0 2.7 48 17-74 32-80 (110)
458 3lo3_A Uncharacterized conserv 21.2 1.8E+02 0.006 18.9 5.6 40 24-63 27-71 (94)
459 2jsh_A Appetite-regulating hor 21.2 34 0.0012 16.6 0.8 23 13-35 2-24 (26)
460 4e8u_A Putative uncharacterize 21.2 2.6E+02 0.0088 20.7 6.5 49 110-158 13-73 (172)
461 2nn4_A Hypothetical protein YQ 20.8 38 0.0013 21.1 1.2 17 19-35 4-20 (72)
462 3p8b_B Transcription antitermi 20.6 83 0.0028 22.6 3.3 34 33-68 33-66 (152)
463 3pm0_A Cypib1, cytochrome P450 20.3 1.5E+02 0.0052 25.5 5.6 49 9-63 18-68 (507)
464 4a4j_A Pacszia, cation-transpo 20.1 1.4E+02 0.0047 17.2 5.3 54 110-165 4-60 (69)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.6e-35 Score=237.39 Aligned_cols=164 Identities=24% Similarity=0.343 Sum_probs=144.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|.+||..||+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEcCHH
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~ 158 (297)
....... .....+|||+||+..+++++|.++|.+||.|..+.|+.+.++ +||||+|.+.+
T Consensus 93 ~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 93 QRDPSLR------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCTHHH------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred ccccccc------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 6433211 223468999999999999999999999999999999987653 69999999999
Q ss_pred HHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+|.+|++.|||..|+| ..|.|..+..+
T Consensus 155 ~a~~Ai~~lng~~~~g----~~i~V~~a~~~ 181 (213)
T 4f02_A 155 AAERAIEKMNGMLLND----RKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCCH
T ss_pred HHHHHHHHhCCCEECC----EEEEEEEcCCC
Confidence 9999999999999999 78888877543
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.7e-33 Score=225.33 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~-~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++++|||+||| ..+|+++|+++|++||.|..|+|+.+ .+|||||+|.++++|+.||+.|||..|.|++|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 368999999999 79999999999999999999999764 479999999999999999999999999999999999975
Q ss_pred CCCCCCCC-CC-C-----CCCCCC--CCC--------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe--eEEEEEe
Q 022425 83 GRRHSSSM-DR-Y-----SSYSSG--GSR--------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 143 (297)
Q Consensus 83 ~~~~~~~~-~~-~-----~~~~~~--~~~--------~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i--~~~~~~~ 143 (297)
....+... .. . ..+... ... .....+..+|||.|||..+++++|+++|.+||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 00 0 000000 000 0112356789999999999999999999999999 8888887
Q ss_pred cCC--CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 144 ~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
+.. .++|||+|.+.++|..|+..|||..+.|......+.|.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 643 37999999999999999999999999997655555554
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-33 Score=217.05 Aligned_cols=159 Identities=23% Similarity=0.364 Sum_probs=142.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999965 35678999999999999999999899999999999999987544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHH
Q 022425 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDM 160 (297)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a 160 (297)
.. ......+|+|+|||..+++++|.++|.+||.|..+.+..+.. .|+|||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 31 234567999999999999999999999999999999998754 35999999999999
Q ss_pred HHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 161 KYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
..|+..|||..++| ..|.|..++
T Consensus 143 ~~A~~~l~g~~~~g----~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNG----RPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETT----EECEEEESC
T ss_pred HHHHHHhCCCccCC----cEEEEEecC
Confidence 99999999999999 777777654
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=5.4e-33 Score=216.03 Aligned_cols=151 Identities=25% Similarity=0.377 Sum_probs=137.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.++++|..|++.|||..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999965 56678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~ 157 (297)
+... .....+|+|.|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 5432 23457899999999999999999999999999999988763 36999999999
Q ss_pred HHHHHHHHHhcCCeeccc
Q 022425 158 DDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~ 175 (297)
++|..|+..|||..+.|.
T Consensus 141 ~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp HHHHHHHHHHTTCCCTTC
T ss_pred HHHHHHHHHhcCCccCCC
Confidence 999999999999999994
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.6e-32 Score=213.66 Aligned_cols=150 Identities=27% Similarity=0.387 Sum_probs=137.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.++++|..|++.|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999954 56678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~ 157 (297)
+... .....+|+|.|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 5442 234579999999999999999999999999999999987632 5999999999
Q ss_pred HHHHHHHHHhcCCeecc
Q 022425 158 DDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g 174 (297)
++|..|+..|||..+.|
T Consensus 142 ~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhcCCEecC
Confidence 99999999999999977
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=3.9e-32 Score=229.11 Aligned_cols=181 Identities=19% Similarity=0.280 Sum_probs=147.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 2 SSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
+..++++|||+|||+++|+++|+ ++|+.||.|..|.|+.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 35789999999999999999966 99999999999999888889999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCC--------------------------------------CC----------------------CCC
Q 022425 78 ELAHGGRRHSSSMDR--------------------------------------YS----------------------SYS 97 (297)
Q Consensus 78 ~~~~~~~~~~~~~~~--------------------------------------~~----------------------~~~ 97 (297)
.++............ .. .+.
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 999754421000000 00 000
Q ss_pred -------CCC------------------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Q 022425 98 -------SGG------------------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (297)
Q Consensus 98 -------~~~------------------------~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 146 (297)
+.+ .........++|||+||+..+++++|+++|.+||.|..+.+..+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000 000112356789999999999999999999999999999998665
Q ss_pred CcEEEEEEcCHHHHHHHHHHhcCCeec-cceeeeEEEEeecc
Q 022425 147 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (297)
Q Consensus 147 ~~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (297)
.+||||+|.+.++|..|+..|||..+. | ..|.|.+++
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEec
Confidence 369999999999999999999999999 8 777777654
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.8e-32 Score=218.77 Aligned_cols=167 Identities=17% Similarity=0.295 Sum_probs=140.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.++++|.+||. +++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeec
Confidence 35678999999999999999999999999999999965 46678999999999999999998 599999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEc
Q 022425 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYT 155 (297)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~ 155 (297)
+........ ........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.
T Consensus 89 ~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~ 154 (196)
T 1l3k_A 89 AVSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 154 (196)
T ss_dssp CCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ccCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEEC
Confidence 875443211 11234557999999999999999999999999999999998754 359999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+.++|.+|+.. +|..++| ..|.|..+.++
T Consensus 155 ~~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k 183 (196)
T 1l3k_A 155 DHDSVDKIVIQ-KYHTVNG----HNCEVRKALSK 183 (196)
T ss_dssp SHHHHHHHHHC-SCCEETT----EECEEEECC--
T ss_pred CHHHHHHHHHh-CCcEECC----EEEEEEecCCh
Confidence 99999999986 8999999 77888877655
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.4e-31 Score=213.90 Aligned_cols=178 Identities=22% Similarity=0.366 Sum_probs=145.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
..+++|||+|||+++|+++|.++|+.| | .|..+.+. .++|||||+|.++++|++|| .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 467999999999999999999999999 5 56666664 45899999999999999999 699999999
Q ss_pred cEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----Cc
Q 022425 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (297)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~ 148 (297)
+.|.|.++.................+............+|||+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998765433322111111111112223346778999999999999999999999999999999998863 35
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
||||+|.+.++|..|+..|||..++| ..|.|..+.+.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999 78888887655
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8.3e-32 Score=218.24 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=144.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.++++|.+|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 458999999999999999999999999999999965 56789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCH
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~ 157 (297)
.......... ..........+|||.|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 107 ~~~~~~~~~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPIID---------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHHH---------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhhh---------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 4431100000 0000123557999999999999999999999999999999998854 35999999999
Q ss_pred HHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
++|.+|+..|||..|+| ..|.|..+...
T Consensus 178 ~~A~~A~~~l~g~~~~g----~~i~V~~a~~~ 205 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGG----QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHTTCBCSS----SBCEEEECSSC
T ss_pred HHHHHHHHHccCCEeCC----cEEEEEEecCC
Confidence 99999999999999999 77888887655
No 10
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.9e-31 Score=217.95 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=144.5
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++++|||+|||+ ++|+++|+++|+.||.|..|.|+.+. +|||||+|.++++|++|++.|||..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999998654 89999999999999999999999999999999999986
Q ss_pred CCCCCCCCCC-----CCCCCCC--------C--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC
Q 022425 83 GRRHSSSMDR-----YSSYSSG--------G--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (297)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~--------~--~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~ 146 (297)
.......... ...+... . .......+..+|||.|||..+++++|.++|.+|| .|..+.+... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~ 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-D 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-S
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-C
Confidence 5322111000 0000000 0 0011134578999999999999999999999999 9999998653 3
Q ss_pred CcEEEEEEcCHHHHHHHHHHhcCCeec-cceeeeEEEEeeccC
Q 022425 147 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYDS 188 (297)
Q Consensus 147 ~~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~v~~~~~ 188 (297)
.+||||+|.+.++|.+|+..|||..+. | ..|.|.++++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~~ 227 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSKS 227 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECSS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEecC
Confidence 469999999999999999999999999 7 6777776643
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.8e-32 Score=210.83 Aligned_cols=161 Identities=16% Similarity=0.291 Sum_probs=137.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC---C--CCCcEEEEEEcChHHHHHHHHhcCCcccC---CcEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---P--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~---~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~ 76 (297)
++++|||+|||+++|+++|+++|++||+|..|.|+.+ + .++|||||+|.++++|++|++.|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999653 2 56899999999999999999999998876 68888
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEE
Q 022425 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (297)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~ 153 (297)
+.++..... ......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+
T Consensus 82 ~~~~~~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKN-------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCC-------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Ecccccccc-------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 888764432 1335679999999999999999999999999999999988653 599999
Q ss_pred EcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
|.+.++|..|+..|||..+.+.. ...|.|..
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~-~~~l~V~~ 173 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGC-SSPMVVKF 173 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTC-SSCCEEEE
T ss_pred ECCHHHHHHHHHHhcCCcccCCC-CCCeEEEe
Confidence 99999999999999998776410 14455544
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.9e-31 Score=208.39 Aligned_cols=155 Identities=23% Similarity=0.398 Sum_probs=137.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
+++++|||+|||+++|+++|+++|++| | .|..+.+.. ++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 467999999999999999999999999 6 777777753 4899999999999999999 799999999
Q ss_pred cEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----Cc
Q 022425 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (297)
Q Consensus 73 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~ 148 (297)
+.|.|.++..... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 78 QSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp EECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999998764332 23367999999999999999999999999999999998864 35
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
||||+|.+.++|.+|+..|||..++| ..|.|..+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETT----EECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEeC
Confidence 99999999999999999999999999 67777654
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.4e-32 Score=215.55 Aligned_cols=163 Identities=16% Similarity=0.245 Sum_probs=140.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ |||..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 467899999999999999999999999998776333 3357789999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHH
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a 160 (297)
...... ......+|||+|||..+++++|.++|.+||.|..+ .......+||||+|.+.++|
T Consensus 89 ~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHH
Confidence 764321 23467899999999999999999999999998877 22334457999999999999
Q ss_pred HHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 161 KYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
.+|+..|||..+.| ..|.|..+.++
T Consensus 150 ~~A~~~l~g~~~~g----~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDG----RSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETT----EEEEEEECSSC
T ss_pred HHHHHHhCCCEECC----eEEEEEecCCC
Confidence 99999999999999 78888887654
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=2.3e-31 Score=212.81 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 5 ~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
++++|||+|||+ ++|+++|+++|+.||.|..|.|+.+. +|||||+|.++++|..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999998654 799999999999999999999999999999999999865
Q ss_pred CCCCCCCCC-----CCCC--------CCCC--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC
Q 022425 84 RRHSSSMDR-----YSSY--------SSGG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG 147 (297)
Q Consensus 84 ~~~~~~~~~-----~~~~--------~~~~--~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~ 147 (297)
......... ...+ ...+ .......+..+|+|.|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 322111000 0000 0000 0111124578999999999999999999999999 99999986643 5
Q ss_pred cEEEEEEcCHHHHHHHHHHhcCCeec-cceeeeEEEEeecc
Q 022425 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (297)
Q Consensus 148 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~v~~~~ 187 (297)
++|||+|.+.++|..|+..|||..++ | ..|.|.+++
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a~ 195 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSK 195 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSC----CSCCEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCC----CeEEEEeec
Confidence 69999999999999999999999998 7 566666554
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.8e-32 Score=212.14 Aligned_cols=159 Identities=19% Similarity=0.381 Sum_probs=140.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+++++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.++++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999965 577899999999999999999994 67899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~ 156 (297)
.+... .....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 79 ~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 79 IPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred cchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 64321 23456899999999999999999999999999999987753 3699999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
.++|.+|++ ++|..+.| ..|.|..+.++
T Consensus 139 ~~~a~~A~~-~~~~~~~g----~~i~V~~a~pk 166 (167)
T 2cjk_A 139 ADAVDRVCQ-NKFIDFKD----RKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHHH-CSEECSSS----SCEEEEECCCC
T ss_pred HHHHHHHHh-CCCEEeCC----eEEEEeecCCC
Confidence 999999998 89999999 77888877553
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.6e-30 Score=216.66 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=146.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4568999999999999999999999999999999864 5677899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcC
Q 022425 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTS 156 (297)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~ 156 (297)
.+..... ......+|||.|||..+ ++++|.++|.+||.|..+.+..+..+ ++|||+|.+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 7644321 23456799999999995 99999999999999999999887543 599999999
Q ss_pred HHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
.++|..|+..|||..++| ..|.|..+.+.
T Consensus 236 ~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHHHHHHhCCCccCC----eEEEEEEecCC
Confidence 999999999999999999 78888877654
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=3.4e-30 Score=214.58 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=136.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|.++|+.||.|..|.|.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 4567999999999999999999999999999999964 389999999999999999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHH
Q 022425 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDM 160 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a 160 (297)
..+|||+|||..+++++|.++|.+||.|..+.++.+..+ |||||+|.+.++|
T Consensus 96 -------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 96 -------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp -------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred -------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 348999999999999999999999999999999988543 5999999999999
Q ss_pred HHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 161 KYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
..|+..||+..+........|.|......
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999995544432122266677666543
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.5e-30 Score=217.52 Aligned_cols=167 Identities=16% Similarity=0.282 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+.+|+++|.++|..|| +|..|.|+.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 5679999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCC-----CcEEEEEEc
Q 022425 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYT 155 (297)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~ 155 (297)
+....... ........+|||.|||.. +++++|.++|.+||.|..+.+..+.. .+||||+|.
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 65432211 123456789999999999 99999999999999999999988654 469999999
Q ss_pred CHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+.++|..|+ .|||..+.| ..|.|..+.++
T Consensus 263 ~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGN----REISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETT----EEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECC----cEEEEEEecCC
Confidence 999999999 999999999 88888877653
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.8e-29 Score=212.97 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=138.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.++++|||+|||+++|+++|.++|+.|| |..|.+ +.++|||||+|.++++|.+|+..|||..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 3679999999999999999999999999 999988 4568999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHH
Q 022425 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~ 159 (297)
...+|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++
T Consensus 94 ------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 94 ------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp ------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 2359999999999999999999999999999999887643 599999999999
Q ss_pred HHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
|..|+..|||..+.| ..|.|..+...
T Consensus 150 a~~A~~~l~~~~~~g----~~i~v~~a~~~ 175 (284)
T 3smz_A 150 AARAKSDLLGKPLGP----RTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCGG
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 999999999999999 77778776544
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.8e-29 Score=211.82 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=135.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.+.++|||+|||+++|+++|.++|+.||+|..|.|+.+ ..++|||||+|.++++|.+|++ |||..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999763 3358999999999999999996 99999999999999852
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC---CCcEEEEEEcCHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR---GGMTGIVDYTSYD 158 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~~~~~fv~f~~~~ 158 (297)
..+|||+|||..+++++|.++|.+|| .|..+.+..+. ..+||||+|.+.+
T Consensus 117 --------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 --------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp --------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred --------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 45999999999999999999999999 99999998765 4579999999999
Q ss_pred HHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+|..|+..|||..+.| ..|.|..+.+.
T Consensus 171 ~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 197 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEG----YTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCCC
T ss_pred HHHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 9999999999999999 77778776544
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=2.8e-25 Score=161.29 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+++|||+|||+++|+++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|++||+.|||..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999999653 456899999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 022425 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (297)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~ 125 (297)
..... ..........+|||.|||+.++++.
T Consensus 84 ~~~~~------------~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREA------------ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------------
T ss_pred ccccc------------ccccccCCCCceEeCCCCCCccccc
Confidence 43221 1111233445799999999988753
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.3e-22 Score=179.54 Aligned_cols=85 Identities=33% Similarity=0.554 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+. ++.++|||||+|.++++|++||..|||+.|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 022425 81 HGGRRHSS 88 (297)
Q Consensus 81 ~~~~~~~~ 88 (297)
.+.....+
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 87654433
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=145.85 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|++|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999964 56788999999999999999999999999999999999987
Q ss_pred C
Q 022425 82 G 82 (297)
Q Consensus 82 ~ 82 (297)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.89 E-value=3.5e-23 Score=150.38 Aligned_cols=105 Identities=30% Similarity=0.437 Sum_probs=94.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..++++|||+|||+++|+++|.++|+.||.|..|.|+.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~ 135 (297)
.... .+++....+++|+++|.+||.
T Consensus 85 ~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4432 346667789999999999984
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=4.5e-22 Score=176.01 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=107.7
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeEEEE----ecCC-CCCcEE-----EEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVDIDL----KIPP-RPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~~~~----~~~~-~~~g~a-----fV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.||++ |.+||.++|+|..|.. +... ...+|+ |+.|....+|..++..++......+.........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45665 7899999999988733 2111 233444 8888887777666654544333222100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHH
Q 022425 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYD 158 (297)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~ 158 (297)
..... .....+.+.........+.++|||+||++.+++++|.++|.+||.|..|.|+.+.. .+||||+|.+.+
T Consensus 79 ~~~~~---~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 155 (437)
T 3pgw_S 79 QQEVE---TELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER 155 (437)
T ss_pred HHHHH---HhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH
Confidence 00000 00000000111112234567999999999999999999999999999999987743 469999999999
Q ss_pred HHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+|.+||..|||..|.| ..|.|.++...
T Consensus 156 ~A~~Ai~~lng~~i~g----r~i~V~~a~~~ 182 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDG----RRVLVDVERGR 182 (437)
T ss_pred HHHHHHHHcCCCEECC----EEEEEEEeCCC
Confidence 9999999999999999 77777776543
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.4e-22 Score=141.64 Aligned_cols=84 Identities=58% Similarity=1.042 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
...+.++|||+|||+++|+++|+++|++||+|..|.|+.++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=142.03 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46889999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred ccCC
Q 022425 80 AHGG 83 (297)
Q Consensus 80 ~~~~ 83 (297)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=141.30 Aligned_cols=100 Identities=41% Similarity=0.575 Sum_probs=84.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~ 86 (297)
++|||+|||+++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999866 6899999999999999999999999999999999999876532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q 022425 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (297)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~ 118 (297)
.. .+..........+|||+||+
T Consensus 79 ~~----------~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SR----------FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SC----------CCSCCCSCCCCSCCCSCCCC
T ss_pred cc----------CCCCCccccCCCceecCCCC
Confidence 21 11111223456789999986
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=139.84 Aligned_cols=85 Identities=27% Similarity=0.492 Sum_probs=78.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
|+..+.++|||+|||.++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999966 56788999999999999999999999999999999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
+++....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986554
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=138.22 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhc-CCcccCCcEEEEEEc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELA 80 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~~ 80 (297)
+++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.++++|++||+.| |+..|.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999964 5788999999999999999999877 457899999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86553
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.2e-21 Score=135.51 Aligned_cols=84 Identities=31% Similarity=0.467 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999965 567889999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876643
No 32
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=9.6e-22 Score=131.69 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
-.+.-|||+||++.+|+++|+++|.+||+|.+|+|.. ++|||||+|.++++|.+|++.|||..+.|++|.|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3567899999999999999999999999999999975 59999999999999999999999999999999999984
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=137.84 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.++++|+.|++.|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 367899999999999999999999999999999999864 8999999999999999999886 47899999999999
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
+.....
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 876543
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=135.15 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc--cCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~v~~~~ 81 (297)
.|+++|||+|||..+|+++|.++|++||+|..|.|+. .+|||||+|.+.++|..|+..||+.. |.|++|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 6889999999999999999999999999999999974 48999999999999999999999875 789999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
.+.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 35
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=137.21 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC--eeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCc----ccCCc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~--V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~ 73 (297)
+...+||||+|||+++|+++|+++|++||. |.+|.|+. ++.++|||||+|.+.++|++|++.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 367789999999999999999999999995 67888854 5788999999999999999999999997 48999
Q ss_pred EEEEEEccC
Q 022425 74 RLRVELAHG 82 (297)
Q Consensus 74 ~i~v~~~~~ 82 (297)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=142.09 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
..++++|||+|||+.+++++|+ ++|++||+|..|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999875 799999999999998888899999999999999999999999999999999999
Q ss_pred EccCCC
Q 022425 79 LAHGGR 84 (297)
Q Consensus 79 ~~~~~~ 84 (297)
|+....
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998543
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=136.03 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec------CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++|+..|||..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236689999999999999999999999999999999
Q ss_pred EEEccCCCCC
Q 022425 77 VELAHGGRRH 86 (297)
Q Consensus 77 v~~~~~~~~~ 86 (297)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=3.3e-21 Score=135.22 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
|+++|||+|||.++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999999999999999999999999999965 46779999999999999999999999999999999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 655
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.2e-21 Score=135.02 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+.+ ..+++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 467899999999999999999999999999999999764 3468999999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7554
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.7e-21 Score=133.11 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999965 367899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.+...
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 986654
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=136.40 Aligned_cols=84 Identities=39% Similarity=0.572 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35789999999999999999999999999999999965 367899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9866543
No 42
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.5e-21 Score=134.00 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
.+.++|||+|||+++|+++|+ ++|++||+|..|.|+.+...++||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999986544489999999999999999999999999999999999
Q ss_pred ccCCC
Q 022425 80 AHGGR 84 (297)
Q Consensus 80 ~~~~~ 84 (297)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 97654
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=4.6e-21 Score=130.73 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
+.+|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999964 467799999999999999999999999999999999999976
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.9e-21 Score=135.92 Aligned_cols=84 Identities=32% Similarity=0.519 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.+++||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 022425 81 HGGRRHS 87 (297)
Q Consensus 81 ~~~~~~~ 87 (297)
.+.....
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8766443
No 45
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.5e-21 Score=135.18 Aligned_cols=83 Identities=29% Similarity=0.441 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 36789999999999999999999999999999999965 567899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 46
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=134.42 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 45678999999999999999999999999999999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=132.97 Aligned_cols=83 Identities=23% Similarity=0.488 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||+ ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+.+....
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 48
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=137.77 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~~ 80 (297)
..++++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|++|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 467899999999999999999999999999999999864 89999999999999999998884 6899999999999
Q ss_pred cCCCCCC
Q 022425 81 HGGRRHS 87 (297)
Q Consensus 81 ~~~~~~~ 87 (297)
+......
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8765543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=4.1e-21 Score=131.60 Aligned_cols=79 Identities=33% Similarity=0.564 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999954 466799999999999999999999999999999999999
Q ss_pred cc
Q 022425 80 AH 81 (297)
Q Consensus 80 ~~ 81 (297)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=135.54 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999999999999999999999999999965 46678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 022425 82 GGRRH 86 (297)
Q Consensus 82 ~~~~~ 86 (297)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=1.6e-21 Score=137.22 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
|+..++++|||+|||.++|+++|. ++|++||.|..|.|..++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456789999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 022425 77 VELAHGGR 84 (297)
Q Consensus 77 v~~~~~~~ 84 (297)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998654
No 52
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-21 Score=136.51 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc--ccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~i~v~~ 79 (297)
..++++|||+|||+ ++|+++|.++|++||.|..|.|+.+ ++||||+|.++++|..||+.||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46889999999999 9999999999999999999999753 689999999999999999999864 59999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
++....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.6e-20 Score=136.35 Aligned_cols=84 Identities=24% Similarity=0.425 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||.++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999999999999965 467789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876544
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=132.76 Aligned_cols=78 Identities=27% Similarity=0.438 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ +.+++||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56799999999999999999999999999999999653 677999999999999999999999999999999999997
Q ss_pred c
Q 022425 81 H 81 (297)
Q Consensus 81 ~ 81 (297)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=134.01 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~-~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
..++++|||+|||+++|+++|.++|++||.|..| .|+. ++.++|||||+|.++++|++|+..|||..|.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
++.+...
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987654
No 56
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=132.81 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhc--CCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~~~g~~i~v~~~ 80 (297)
..++++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|+.|++.| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 367899999999999999999999999999999998754 899999999999999999977 467899999999999
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
......
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 866543
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=132.44 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||.++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999965 5677899999999999999999999999999999999998
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
.+.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.1e-21 Score=136.08 Aligned_cols=83 Identities=34% Similarity=0.552 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999965 467789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.+...
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 59
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.4e-20 Score=143.23 Aligned_cols=138 Identities=20% Similarity=0.137 Sum_probs=111.5
Q ss_pred CCCCcEEEEEEcChHHHHHHHHhc-CCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q 022425 42 PRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120 (297)
Q Consensus 42 ~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~ 120 (297)
...+|+++|+|.+.++|++|++.| ||..++| .|.|.++......... ................++|||+|||..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG----SHHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS----SSSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc----cccccccccccCCCCCCEEEEeCCCCC
Confidence 356899999999999999999999 9999999 9999987643211000 000011112233556789999999999
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 121 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+++++|.++|.+||.|..+.+..+ ..+||||+|.+.++|..|+..|||..+.| ..|.|..+.+.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 999999999999999999999887 45699999999999999999999999999 77788777654
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=133.00 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ..+++||||+|.+.++|++||..|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 367899999999999999999999999999999999764 3478999999999999999999999999999999999998
Q ss_pred CCCCC
Q 022425 82 GGRRH 86 (297)
Q Consensus 82 ~~~~~ 86 (297)
+....
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 76543
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=7.3e-21 Score=132.40 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46789999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6653
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.7e-21 Score=134.91 Aligned_cols=82 Identities=33% Similarity=0.579 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.++++|++|++.|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-20 Score=134.46 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|++||..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 976543
No 64
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=134.94 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..++++|||+|||.++|+++|+++|.+||+|..|.|+. ++.+++||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 4566899999999999999999999999999999999998
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75443
No 65
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.84 E-value=2.6e-20 Score=132.39 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++||+.|||..|.|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999998 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 022425 84 RRHS 87 (297)
Q Consensus 84 ~~~~ 87 (297)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=134.52 Aligned_cols=83 Identities=24% Similarity=0.440 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec----CCCCCcEEEEEEcChHHHHHHHHhc-CCcccCCcEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRV 77 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v 77 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999954 4677999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 022425 78 ELAHGGRR 85 (297)
Q Consensus 78 ~~~~~~~~ 85 (297)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 67
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=4.1e-20 Score=141.87 Aligned_cols=144 Identities=17% Similarity=0.057 Sum_probs=105.9
Q ss_pred EEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEE
Q 022425 36 IDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLV 114 (297)
Q Consensus 36 ~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 114 (297)
+.|.. ...++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEE
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEE
Confidence 44533 336789999999999999999988887444333333332211100000 0000111223455789999
Q ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCCC
Q 022425 115 TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (297)
Q Consensus 115 ~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~~ 190 (297)
+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+.++|+.|+..|||..+.| ..|.|..+...+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 151 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 151 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCC
Confidence 99999999999999999999999999988753 3699999999999999999999999999 788888887653
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=9.2e-21 Score=137.55 Aligned_cols=83 Identities=19% Similarity=0.420 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.+++||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
.+....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.2e-21 Score=132.96 Aligned_cols=80 Identities=34% Similarity=0.544 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35779999999999999999999999999999999965 356789999999999999999999999999999999999
Q ss_pred ccC
Q 022425 80 AHG 82 (297)
Q Consensus 80 ~~~ 82 (297)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 70
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=129.67 Aligned_cols=78 Identities=36% Similarity=0.635 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..+.++|||+|||+++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=130.29 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCC---C-CCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---R-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~---~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
...++|||+|||+++|+++|.++|++||+|..|.|+.+. . ++|||||+|.+.++|++|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 357899999999999999999999999999999996532 2 789999999999999999999999999999999999
Q ss_pred ccCCC
Q 022425 80 AHGGR 84 (297)
Q Consensus 80 ~~~~~ 84 (297)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 72
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=133.35 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~~~ 81 (297)
.++++|||+|||+++|+++|+++|++||+|..|.|+.. +|||||+|.+.++|.+|++.||+ ..|.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 57899999999999999999999999999999998753 89999999999999999998876 45899999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6554
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=133.84 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee-EEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE----
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR---- 74 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~-~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---- 74 (297)
..++++|||+|||+++|+++|+++|++||+|. .|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 46889999999999999999999999999999 999964 4677899999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 022425 75 LRVELAHGGR 84 (297)
Q Consensus 75 i~v~~~~~~~ 84 (297)
|.|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998654
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.1e-21 Score=135.77 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|||+|||.++|+++|.++|+.||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4668899999999999999999999999999999965 3677899999999999999999999999999999999998
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7543
No 75
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=134.22 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcC------CcccCCcE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~~g~~ 74 (297)
.+.++|||+|||+++|+++|+++|..||+|..|.|+. ++.++|||||+|.+.++|++||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999965 46789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 022425 75 LRVELAHGGRR 85 (297)
Q Consensus 75 i~v~~~~~~~~ 85 (297)
|.|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987654
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=9e-21 Score=132.75 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+.+|+++|+++|++||+|..|.|+.+ +.++|||||+|.++++|++|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357799999999999999999999999999999999653 567899999999999999999999999999999999998
Q ss_pred cC
Q 022425 81 HG 82 (297)
Q Consensus 81 ~~ 82 (297)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.6e-20 Score=134.05 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC---cEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~i~v~ 78 (297)
.+.++|||+|||+++|+++|.++|+.||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 45668999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987654
No 78
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=129.69 Aligned_cols=78 Identities=33% Similarity=0.642 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 79
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=133.63 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-----cEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~i~v~ 78 (297)
...++|||+|||+++|+++|+++|.+||+|..|.|+.+ +||||+|.++++|++||+.|||..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56799999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
++.+...
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987554
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=133.84 Aligned_cols=81 Identities=25% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
..+.++|||+|||+++|+++|+++|+.|| |..|.|+.+ +.++|||||+|.++++|++|| .|||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
++.+...
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 81
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=131.08 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC--CcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~ 81 (297)
.++++|||+|||+++|+++|+++|++||+|..|.|... ++||||+|.+.++|++|++.|||..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57799999999999999999999999999999999753 789999999999999999999999999 9999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
+..
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2e-20 Score=133.75 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCccc---CCcEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i~ 76 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999966 467899999999999999999999999888 899999
Q ss_pred EEEccCCCC
Q 022425 77 VELAHGGRR 85 (297)
Q Consensus 77 v~~~~~~~~ 85 (297)
|.++.+...
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 83
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.4e-20 Score=134.61 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
...++|||+|||+++|+++|+++|++|| +|..|.|.. ..++|||||+|.+.++|++||+.|||..|.|+.|.|+++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999999853 35799999999999999999999999999999999999875
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.1e-20 Score=139.63 Aligned_cols=82 Identities=34% Similarity=0.570 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36789999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred ccCCC
Q 022425 80 AHGGR 84 (297)
Q Consensus 80 ~~~~~ 84 (297)
+.+..
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 97654
No 85
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=128.87 Aligned_cols=78 Identities=31% Similarity=0.570 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..+.++|||+|||.++|+++|+++|++||.|..|.|+ ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 86
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=132.72 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-EE
Q 022425 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~------t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i 75 (297)
..+++|||+|||+.+ |+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 7899999999999999999963 678899999999999999999999999999998 99
Q ss_pred EEEEccCCC
Q 022425 76 RVELAHGGR 84 (297)
Q Consensus 76 ~v~~~~~~~ 84 (297)
.|.++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999987544
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=3e-21 Score=136.31 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCC------CCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-
Q 022425 3 SRSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG- 72 (297)
Q Consensus 3 ~~~~~~l~V~nL~~------~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 72 (297)
+..+++|||+|||. ++++++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 999999999999999999999964 47789999999999999999999999999999
Q ss_pred cEEEEEEccC
Q 022425 73 YRLRVELAHG 82 (297)
Q Consensus 73 ~~i~v~~~~~ 82 (297)
+.|.|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999864
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-21 Score=136.46 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHhcCCCeeEEEEecCC------CCCcEEEEEEcChHHHHHHHHhcCCcccCCcE
Q 022425 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~---~~F~~~G~V~~~~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (297)
.+.++|||+|||+++|+++|. ++|++||+|..|.|+.+. .++|||||+|.++++|++||+.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 567899999999999999999 999999999999996532 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 022425 75 LRVELAHGGR 84 (297)
Q Consensus 75 i~v~~~~~~~ 84 (297)
|.|.++.+..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998765
No 89
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=133.22 Aligned_cols=79 Identities=15% Similarity=0.400 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|.++|++||+|..|.|+.+ +.++|||||+|.++++|.+||. +||..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 346789999999999999999999999999999999753 6789999999999999999999 9999999999999997
Q ss_pred cC
Q 022425 81 HG 82 (297)
Q Consensus 81 ~~ 82 (297)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.9e-20 Score=134.03 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999999999999999999999999964 56778999999999999999999999999999999999975
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.6e-20 Score=136.89 Aligned_cols=79 Identities=20% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999964 467899999999999999999999999999999999999
Q ss_pred cc
Q 022425 80 AH 81 (297)
Q Consensus 80 ~~ 81 (297)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2e-20 Score=134.70 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|||+|||.++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999964 4677999999999999999999999999999999999998
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 7544
No 93
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.1e-21 Score=133.65 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G--~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+|||+|||+++|+++|+++|++|| .|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999965 56789999999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6553
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=134.46 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35779999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred ccCC
Q 022425 80 AHGG 83 (297)
Q Consensus 80 ~~~~ 83 (297)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.1e-20 Score=134.11 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.+.++|||+|||.++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|++|+..|||..|+|+.|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999653 45789999999999999999999999999999999999875
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 96
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.83 E-value=4.2e-20 Score=129.62 Aligned_cols=76 Identities=26% Similarity=0.506 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..++++|||+|||. ++|+++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 36789999999998 99999999999999999999995 8999999999999999999999999999999999987
Q ss_pred CC
Q 022425 82 GG 83 (297)
Q Consensus 82 ~~ 83 (297)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=4.8e-20 Score=126.80 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 46789999999999999999999999999999999964 46779999999999999999997 688899999999987
Q ss_pred c
Q 022425 80 A 80 (297)
Q Consensus 80 ~ 80 (297)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 98
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.5e-20 Score=137.48 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|||+|||+++|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 022425 81 HGGRRH 86 (297)
Q Consensus 81 ~~~~~~ 86 (297)
.+....
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865543
No 99
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.4e-21 Score=135.20 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~ 79 (297)
..++++|||+|||++ +|+++|.++|++||+|..|.|+. .+|||||+|.+.++|+.|++.||+ ..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468899999999998 99999999999999999999974 489999999999999999998864 669999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
++....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 986543
No 100
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=134.62 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--------EEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~--------~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
..+.++|||+|||+++|+++|+++|++||.|. .|.|+. ++.++|||||+|.+.++|++||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 46789999999999999999999999999999 688854 4678999999999999999999999999999
Q ss_pred CcEEEEEEccCCCC
Q 022425 72 GYRLRVELAHGGRR 85 (297)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (297)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999987654
No 101
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=131.65 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--------~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
.+.++|||+|||.++|+++|+++|++||.|.. |.|.. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88864 46778999999999999999999999999999
Q ss_pred cEEEEEEcc
Q 022425 73 YRLRVELAH 81 (297)
Q Consensus 73 ~~i~v~~~~ 81 (297)
+.|.|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=4.4e-20 Score=131.16 Aligned_cols=81 Identities=27% Similarity=0.520 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|.++|++|| |..|.|+. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 99999965 4677899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=130.66 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|..+ ++||||+|.+.++|++|++.|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 56789999999999999999999999999999999853 899999999999999999999999999999999999875
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=5.3e-20 Score=127.18 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999964 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 022425 82 GG 83 (297)
Q Consensus 82 ~~ 83 (297)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 105
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=3.3e-20 Score=132.72 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..++++|||+|||.++|+++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 89999999999999999999999999999999999986
Q ss_pred CC
Q 022425 83 GR 84 (297)
Q Consensus 83 ~~ 84 (297)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 106
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=131.52 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhc-CCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcc-cCCcEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~v~ 78 (297)
..++++|||+|||+++|+++|.++|+. ||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 467899999999999999999999999 99999999965 56778999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 022425 79 LAHGGRR 85 (297)
Q Consensus 79 ~~~~~~~ 85 (297)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976554
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=126.67 Aligned_cols=76 Identities=28% Similarity=0.460 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhc-CCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~~~ 81 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+.+ +|||||+|.+.++|.+|+..| ||..+.|++|.|++++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 357799999999999999999999999999999999853 799999999999999999998 9999999999999974
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=131.59 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||.++|+++|+++|+.||.|..|.|+.+ ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999865 899999999999999999999999999999999999876
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 109
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=137.14 Aligned_cols=84 Identities=31% Similarity=0.581 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||.++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35679999999999999999999999999999999965 456789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+......
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 110
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=127.30 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-EEEE
Q 022425 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (297)
Q Consensus 6 ~~~l~V~nL~~~~------t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v 77 (297)
+++|||+|||..+ |+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7899999999999999999963 678899999999999999999999999999999 8876
No 111
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-20 Score=130.25 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 3 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
..++++|||+|||+ ++|+++|.++|++||+|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36889999999998 99999999999999999999996 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6554
No 112
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=127.81 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcC--CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.++++|||+|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 567899999999999999999999999 999999886 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=133.48 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V----~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
.++++|||+|||.++|+++|.++|+.||.| ..+.+. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999999 555555 788899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+.+....
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=129.59 Aligned_cols=79 Identities=30% Similarity=0.500 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
..+++|||+|||+++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999997 55553 467999999999999999999999999999999999999865
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=129.84 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|+++|++||.|.-+ ...++.+++||||+|.++++|++||..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988221 1235778999999999999999999999999999999999999876
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 116
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=133.03 Aligned_cols=81 Identities=36% Similarity=0.684 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||..+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999964 4667899999999999999999999999999999999999
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8654
No 117
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=133.48 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.++++|||+|||..+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46779999999999999999999999999999999999998
Q ss_pred CCCCC
Q 022425 82 GGRRH 86 (297)
Q Consensus 82 ~~~~~ 86 (297)
.....
T Consensus 113 ~~~~~ 117 (124)
T 2kt5_A 113 SQIDL 117 (124)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 75543
No 118
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=129.78 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEe-c---CCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCcEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-V~~~~~~-~---~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i 75 (297)
+.+.++|||+|||+++|+++|.++|..||. |..|.|+ . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457899999999999999999999999998 9999996 3 35789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 022425 76 RVELAHGGRR 85 (297)
Q Consensus 76 ~v~~~~~~~~ 85 (297)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=130.20 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||.++|+++|.++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4778999999999999999999965 59999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86553
No 120
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=132.56 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
++.++|||+|||+++|+++|+++|++||.|..|.|+. .++||||+|.+.++|+.||..|||..|.|+.|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999999999874 4899999999999999999999999999999999999754
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.4e-20 Score=131.23 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.++++|++||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999965 466789999999999999999997 99999999999999
Q ss_pred ccCCCCC
Q 022425 80 AHGGRRH 86 (297)
Q Consensus 80 ~~~~~~~ 86 (297)
+.+....
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=131.34 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEe---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
...++|||+|||+++|+++|+++|.+||.|..+.++ .++.++|||||+|.++++|++|+..|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999876664 35677899999999999999999999999999999999998
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 743
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=4e-20 Score=130.95 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
...++|||+|||.++|+++|+++|++||.|..|.|. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 346899999999999999999999999999999997 3589999999999999999999999999999999999874
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=5.9e-20 Score=139.98 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G--~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++|||+|||+++|+++|.++|+.|| .|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999964 577899999999999999999999999999999999999
Q ss_pred ccC
Q 022425 80 AHG 82 (297)
Q Consensus 80 ~~~ 82 (297)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 125
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=9e-20 Score=139.62 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||.++|+++|.++|++||+|..|.|+. ++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999965 3567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86554
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.5e-20 Score=127.48 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC-eeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||| ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 7777664 389999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87654
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.6e-20 Score=130.29 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCccc-----CCcE
Q 022425 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (297)
Q Consensus 2 ~~~~~~~l~V--~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~g~~ 74 (297)
...++++||| |||+.++|+++|+++|++||+|..|.|.. .+|||||+|.+.++|++|++.|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3568899999 77999999999999999999999998864 389999999999999999999999988 6899
Q ss_pred EEEEEccCCC
Q 022425 75 LRVELAHGGR 84 (297)
Q Consensus 75 i~v~~~~~~~ 84 (297)
|.|.++....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 128
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.81 E-value=1.9e-20 Score=131.05 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|++||.|..+.++. ++.++|||||+|.++++|++||+.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4568999999999999999999999999998777743 5677899999999999999999999999999999999997
Q ss_pred cC
Q 022425 81 HG 82 (297)
Q Consensus 81 ~~ 82 (297)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 129
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=4.6e-20 Score=123.18 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|++ |||..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999964 46789999999999999999998 9999999999999875
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=129.07 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999965 467899999999999999999999999999999988776
Q ss_pred cc
Q 022425 80 AH 81 (297)
Q Consensus 80 ~~ 81 (297)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=132.09 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||.++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 3678999999999999999999 899999999999999987
Q ss_pred CC
Q 022425 82 GG 83 (297)
Q Consensus 82 ~~ 83 (297)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 132
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.9e-20 Score=130.64 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec----CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
...++|||+|||.++|+++|+++|+.|| |..|.|+. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999964 4678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 022425 80 AHGG 83 (297)
Q Consensus 80 ~~~~ 83 (297)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=129.51 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567899999999999999999999999999887 566778999999999999999999999999999999999998765
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=124.93 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|+++|+.| .|..|.|+. ++.++|||||+|.+.++|++||. |||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567999999999999999999999999 999999975 46678999999999999999999 9999999999999999
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8654
No 135
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=6.3e-20 Score=136.64 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999964 5678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 136
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=120.55 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=68.2
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHHhcC-CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 4 RSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 4 ~~~~~-l~V~nL~~~~t~~~----l~~~F~~~-G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
.|+.| |||+|||..+++++ |+++|++| |+|.+| + .|||||.|.+.++|++|++.|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 56899999 599998 3 399999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 022425 78 ELAHGGRRH 86 (297)
Q Consensus 78 ~~~~~~~~~ 86 (297)
.+++.....
T Consensus 79 ~~A~~~sd~ 87 (96)
T 2diu_A 79 SFTPKNREL 87 (96)
T ss_dssp ESSCCSCCC
T ss_pred EecCCCcce
Confidence 999876643
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=1.7e-19 Score=129.73 Aligned_cols=76 Identities=28% Similarity=0.583 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 5 ~~~~l~V~nL~~~-~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
++++|||+|||++ +|+++|+++|++||+|..|.|. ++||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 9999999999999999999993 899999999999999999999999999999999999854
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 138
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-20 Score=123.19 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|+..|| ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999999 9999999999986
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=126.23 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++||. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 36789999999999999999999999999999999965 46778999999999999999999 47899999999999
Q ss_pred ccCCCC
Q 022425 80 AHGGRR 85 (297)
Q Consensus 80 ~~~~~~ 85 (297)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987654
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=136.51 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--EEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCc----ccCCc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~ 73 (297)
..++++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 357899999999999999999999999999966 88854 577899999999999 999999999999 99999
Q ss_pred EEEEEEccCCCC
Q 022425 74 RLRVELAHGGRR 85 (297)
Q Consensus 74 ~i~v~~~~~~~~ 85 (297)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987544
No 141
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3.3e-19 Score=136.84 Aligned_cols=82 Identities=38% Similarity=0.568 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|+.||..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 142
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=128.94 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..+.++|||+|||.++|+++|+++|+.|+.|.-+....++.+++||||+|.++++|++||..|||..|.|+.|.|.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 36789999999999999999999999886554444445677889999999999999999999999999999999999987
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
...
T Consensus 92 ~~~ 94 (102)
T 2fc8_A 92 KGE 94 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 143
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=127.28 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE-EEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~-~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|..||.|.. |.|+. ++.++|||||+|.++++|++||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56799999999999999999999999999987 77754 577899999999999999999996 999999999999998
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7544
No 144
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.3e-19 Score=140.02 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.++++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|+.||..|||..|.|++|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=3e-20 Score=128.68 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.+.+ |..|+..|||..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999965 4678999999999999 99999999999999999999999865
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 146
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=134.70 Aligned_cols=77 Identities=34% Similarity=0.572 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999985
No 147
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2.9e-19 Score=131.43 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||.++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|++|| .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 358999999999999999999999999999999964 5788999999999999999999 699999999999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 148
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=129.68 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+++|+++|+++|..||.|..|.|+. ++.++|||||+|.+.++|++||.. |+..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999965 367899999999999999999996 9999999999999998
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=1.3e-19 Score=124.79 Aligned_cols=78 Identities=31% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
+...++|||+|||+++|+++|+++|++| .|..|.|. .++|||||+|.++++|++|+..|||..+.|++|.|+++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999985 5689999999999999999999999999999999999875
Q ss_pred CC
Q 022425 83 GR 84 (297)
Q Consensus 83 ~~ 84 (297)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 150
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=129.99 Aligned_cols=80 Identities=19% Similarity=0.322 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCccc--------CCc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--------~g~ 73 (297)
.+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5779999999999999999999999999999999965 466789999999999999999999999999 578
Q ss_pred EEEEEEccCC
Q 022425 74 RLRVELAHGG 83 (297)
Q Consensus 74 ~i~v~~~~~~ 83 (297)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998743
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=9.3e-20 Score=137.46 Aligned_cols=82 Identities=24% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--------~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (297)
..++++|||+|||+++|+++|.++|+.||.|.. |.+..++.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999999876 555667888999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 022425 75 LRVELAHGGR 84 (297)
Q Consensus 75 i~v~~~~~~~ 84 (297)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=130.86 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe-eEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V-~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.++++|++||.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567999999999999999999999999999 8888854 567899999999999999999995 999999999999998
Q ss_pred cCC
Q 022425 81 HGG 83 (297)
Q Consensus 81 ~~~ 83 (297)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.5e-19 Score=123.31 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++||..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57799999996 89999999999999999999995 45899999999999999999999999999999999999866
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 154
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=127.61 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+++|+++|+++|+.||. +.|.|+. ++.++|||||+|.++++|++||+ +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56789999999999999999999999995 4888854 56778999999999999999996 89999999999999987
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 155
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.6e-19 Score=123.25 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
...++|||+|||.++|+++|+++|++||.|..| +......+ ||||+|.++++|++|+. |||..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 567899999999999999999999999999998 43221223 99999999999999999 9999999999999988755
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=1.4e-19 Score=130.98 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE-----EEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----i~v~ 78 (297)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ +||||+|.++++|++||+.|||..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999864 99999999999999999999999999998 7777
Q ss_pred EccC
Q 022425 79 LAHG 82 (297)
Q Consensus 79 ~~~~ 82 (297)
.+.+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 7654
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.7e-19 Score=136.04 Aligned_cols=78 Identities=45% Similarity=0.735 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|||..|.|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 5899999999999999999999999999999999998764
No 158
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=4.5e-19 Score=129.23 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=69.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcE-EEEEEcChHHHHHHHHhcCCcccCC--cEEEEEEccCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~~~~~ 83 (297)
..|||+||++.+|+++|+++|++||+|..|.|... .+|| |||+|.+.++|+.|++.|||..|.| +.|+|+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 45679999999999999999999999999988652 3688 9999999999999999999999988 99999999876
Q ss_pred CC
Q 022425 84 RR 85 (297)
Q Consensus 84 ~~ 85 (297)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 43
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.7e-19 Score=131.21 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. ++.++|||||+|.++++|++||+ ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999999 89999965 36778999999999999999999 99999999999999
Q ss_pred EccC
Q 022425 79 LAHG 82 (297)
Q Consensus 79 ~~~~ 82 (297)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9863
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=123.92 Aligned_cols=80 Identities=15% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEE-EecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..+++|||+|||+++|+++|+++|++||.|..|. |+.+. ..+.|||+|.+.++|..|+..|||..|.|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65432 245599999999999999999999999999999999986
Q ss_pred CC
Q 022425 83 GR 84 (297)
Q Consensus 83 ~~ 84 (297)
..
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 161
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-20 Score=130.28 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++||+ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999999888222 2357789999999999999999999 99999999999999998
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
+..
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=6.4e-19 Score=133.23 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEEEccCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~~~~~ 83 (297)
..+|||+||++.+|+++|+++|++||+|+.|.|.. +.+++||||+|.+.++|+.|++.|||..|.| +.|.|+|+++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 35688999999999999999999999999999864 2357899999999999999999999999965 99999999876
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=4.6e-19 Score=137.98 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.++++|||+|||+.+|+++|+++|++||+|+.|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999965 46789999999999999999999999999999999999987
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 544
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.7e-19 Score=120.45 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
+|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|++|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999964 46789999999999999999999 6999999999999875
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=3.4e-19 Score=144.55 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC--CeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G--~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++|||+|||+++|+++|+++|++|| +|+.|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 567899999999999999999999999999999999999
Q ss_pred ccC
Q 022425 80 AHG 82 (297)
Q Consensus 80 ~~~ 82 (297)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 166
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2.7e-19 Score=132.62 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. .+.++|||||+|.++++|++||+ ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88999965 36778999999999999999999 99999999999999
Q ss_pred EccC
Q 022425 79 LAHG 82 (297)
Q Consensus 79 ~~~~ 82 (297)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9853
No 167
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.3e-18 Score=126.41 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcE-EEEEEcChHHHHHHHHhcCCcccCC--cEEEEEE
Q 022425 5 SSRT--LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (297)
Q Consensus 5 ~~~~--l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 79 (297)
++++ |||+||++.+|+++|+++|++||+|+.|.|... .|| |||+|.+.++|..|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3444 579999999999999999999999999999642 486 9999999999999999999999987 6999999
Q ss_pred ccCCC
Q 022425 80 AHGGR 84 (297)
Q Consensus 80 ~~~~~ 84 (297)
+++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98665
No 168
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-19 Score=130.18 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||+++|+++|.++|+.||.|..+.+ ..++.++|||||+|.++++|++||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999977333 2467789999999999999999999 9999999999999998
Q ss_pred cC
Q 022425 81 HG 82 (297)
Q Consensus 81 ~~ 82 (297)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=124.02 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
.++|||+|||+++|+++|+++|+.| .|..|.|+. ++.++|||||+|.++++|++||. ||+..|+|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999965 46789999999999999999995 999999999999998763
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=127.56 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCC---eeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
..+.++|||+|||+++|+++|+++|+.||. |..|.|+. .+.++|||||+|.+.++|++||. ||+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357789999999999999999999999998 89999965 36789999999999999999999 9999999999999
Q ss_pred EEccC
Q 022425 78 ELAHG 82 (297)
Q Consensus 78 ~~~~~ 82 (297)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=119.02 Aligned_cols=76 Identities=24% Similarity=0.462 Sum_probs=62.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc--cCCcEEEEEEc
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELA 80 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~v~~~ 80 (297)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.++++|++ |+|.. +.|+.|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 367899999999999999999999999999999999863 79999999999999984 45544 46999999998
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7654
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=4e-19 Score=132.13 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+++|+++|+++|++|| |+.|.|+. ++.++|||||+|.++++|++|| .||+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 77999865 4678999999999999999999 599999999999999987
Q ss_pred CCCC
Q 022425 82 GGRR 85 (297)
Q Consensus 82 ~~~~ 85 (297)
....
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 173
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=1.9e-18 Score=125.02 Aligned_cols=81 Identities=56% Similarity=1.016 Sum_probs=67.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce-eeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~-~~~~i~v~ 184 (297)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ +||||+|.+.++|++||+.|||..|.|.. ...+|.|.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 356789999999999999999999999999999999877 79999999999999999999999999943 34457777
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
....+
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76543
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=1.7e-18 Score=119.00 Aligned_cols=73 Identities=32% Similarity=0.594 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcC----C-------CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
..+.++|||+|||+++|+++|+++|++| | +|..|.+..+ +|||||+|.++++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 9999999754 899999999999999999 89999999
Q ss_pred CcEEEEEE
Q 022425 72 GYRLRVEL 79 (297)
Q Consensus 72 g~~i~v~~ 79 (297)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-20 Score=134.07 Aligned_cols=83 Identities=28% Similarity=0.401 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeE--------EEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~--------~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
..++++|||+|||.++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+.++|++|+..|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CcEEEEEEccCCCC
Q 022425 72 GYRLRVELAHGGRR 85 (297)
Q Consensus 72 g~~i~v~~~~~~~~ 85 (297)
|+.|.|.++.+...
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999986553
No 176
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=128.95 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCe----eEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V----~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
.+.++|||+|||+++|+++|+++|++||+| ..|.|+. ++.++|||||+|.++++|++||+ +|+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 467899999999999999999999999986 6788864 57789999999999999999999 5999999999999
Q ss_pred EEcc
Q 022425 78 ELAH 81 (297)
Q Consensus 78 ~~~~ 81 (297)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9875
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=3.5e-18 Score=124.54 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57799999996 69999999999999999999996 45899999999999999999999999999999999999865
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.2e-18 Score=125.70 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCee--EEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~--~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
.+.++|||+|||+++|+++|+++|+.| .|+ .|.|+. ++.++|||||+|.++++|++||+ +++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 676 888864 46789999999999999999999 688999999999998
Q ss_pred ccC
Q 022425 80 AHG 82 (297)
Q Consensus 80 ~~~ 82 (297)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 179
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=118.85 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccC
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~ 82 (297)
..++++|||+|||.++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 457899999999999999999999999999999999754 689999999999999865331 3555899999999886
Q ss_pred CCC
Q 022425 83 GRR 85 (297)
Q Consensus 83 ~~~ 85 (297)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 180
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-17 Score=116.93 Aligned_cols=83 Identities=55% Similarity=0.992 Sum_probs=74.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeecc-ceeeeEEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN-AFSRSYVR 182 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g-~~~~~~i~ 182 (297)
++....++|||+|||..+++++|+++|.+||.|..+.++.+ +||||+|.+.++|++||+.|||..|.| ......|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 44567899999999999999999999999999999999987 699999999999999999999999998 44457788
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|+.+..+
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 8887664
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.4e-18 Score=123.20 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
.+.++|||+|||+++|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|++|+. ++..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4568999999999999999999999999999999965 46678999999999999999999 9999999999999987
Q ss_pred CCC
Q 022425 82 GGR 84 (297)
Q Consensus 82 ~~~ 84 (297)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 544
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=9.4e-18 Score=118.83 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHHhcCCCeeEEEEecC----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 022425 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (297)
Q Consensus 3 ~~~~~~l~V~nL~~-----~~t~~~l~~~F~~~G~V~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (297)
..++++|+|.||.. +-++++|+++|++||+|..|.|+.+ +.++|||||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999952 2478999999999999999999753 46799999999999999999999999999999
Q ss_pred EEEEEEccC
Q 022425 74 RLRVELAHG 82 (297)
Q Consensus 74 ~i~v~~~~~ 82 (297)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999863
No 183
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=121.72 Aligned_cols=75 Identities=32% Similarity=0.503 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecC------CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEE
Q 022425 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (297)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 76 (297)
..++++|||+|||+++|+++|+++|++||+|. +.++.+ +.++|||||+|.++++|++||+.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 46789999999999999999999999999999 777442 5779999999999999999999884 25666666
Q ss_pred EEEc
Q 022425 77 VELA 80 (297)
Q Consensus 77 v~~~ 80 (297)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=8e-18 Score=135.50 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
..++|||+|||+.+|+++|+++|+.||.|..|.|+. .+.++|||||+|.+.++|.+||+.|||..|+|++|.|.++.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 457899999999999999999999999999999965 3456899999999999999999999999999999999998753
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7.6e-18 Score=120.34 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=67.5
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcC----hHH----HHHHHH--hcCCcc
Q 022425 7 RTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFED----YRD----AEDAIR--GRDGYN 69 (297)
Q Consensus 7 ~~l~V~nL----~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~~ 69 (297)
+.|||+|| |+.+++++|+++|+.||+|.+|.++. |+.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999955 67889999999996 444 788988 799999
Q ss_pred cCCcEEEEEEccC
Q 022425 70 FDGYRLRVELAHG 82 (297)
Q Consensus 70 ~~g~~i~v~~~~~ 82 (297)
|+|++|.|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999553
No 186
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-17 Score=127.96 Aligned_cols=78 Identities=22% Similarity=0.424 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||..+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred c
Q 022425 81 H 81 (297)
Q Consensus 81 ~ 81 (297)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=2.1e-17 Score=133.24 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 022425 81 HGGRR 85 (297)
Q Consensus 81 ~~~~~ 85 (297)
.+...
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87654
No 188
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=4.9e-17 Score=125.42 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=72.5
Q ss_pred EEEcChHHHHHHHHhcCCcccC--CcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHH
Q 022425 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLK 127 (297)
Q Consensus 50 V~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~ 127 (297)
.+|.+.++|..|+..|++.... |+.+.+.++.............................++|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999997765 66666655332111000000000000011122234567899999999999999999
Q ss_pred HHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 128 DHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 128 ~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
++|.+||.|..|.|+.+..+ +||||+|.+.++|..||..|||..|.| ..|.|.++...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 99999999999999987543 599999999999999999999999999 77888877654
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=1.7e-17 Score=133.83 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCccc----
Q 022425 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~---------t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---- 70 (297)
.++++|||+||+..+ |+++|.++|++||+|+.|.|+. ++|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 567999999999998 7999999999999999999985 389999999999999999999999999
Q ss_pred --------CCcEEEEEEccCCC
Q 022425 71 --------DGYRLRVELAHGGR 84 (297)
Q Consensus 71 --------~g~~i~v~~~~~~~ 84 (297)
.|+.|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998544
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-17 Score=116.44 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCC-----------CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 022425 4 RSSRTLYVGNLPGDT-----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~-----------t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (297)
.++++|+|.||.... ++++|+++|++||+|..|.| .+..++|||||+|.++++|++|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999994433 26899999999999999976 445689999999999999999999999999999
Q ss_pred cEEEEEEccCCCC
Q 022425 73 YRLRVELAHGGRR 85 (297)
Q Consensus 73 ~~i~v~~~~~~~~ 85 (297)
++|.|.++.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999876543
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=3e-17 Score=127.51 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+.+|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999954 46678999999999999999999999999999999999973
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=4.5e-17 Score=129.48 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~ 80 (297)
.+.++|||+|||..+|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 5667899999999999999999999999999999999999
Q ss_pred cCCC
Q 022425 81 HGGR 84 (297)
Q Consensus 81 ~~~~ 84 (297)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=2.8e-17 Score=128.09 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.+.++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999888 667888999999999999999999999999999999999998753
No 194
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=3.3e-17 Score=126.63 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+.+|+++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 357899999999999999999999999999999964 47789999999999999999999 99999999999999987
Q ss_pred CC
Q 022425 82 GG 83 (297)
Q Consensus 82 ~~ 83 (297)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 195
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=110.66 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
..+++|||+|||..+++++|.++|.+||.|..+.+..+..+ |||||+|.+.++|++|++.|||..+.| ..|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 35679999999999999999999999999999999987654 599999999999999999999999999 7888
Q ss_pred EeeccC
Q 022425 183 VREYDS 188 (297)
Q Consensus 183 v~~~~~ 188 (297)
|.++++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 887754
No 196
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=4.8e-17 Score=120.97 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=73.9
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHH
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~ 124 (297)
.-++|++|.++..|..||..|+|....|... +.+ +...+.....++|||+|||..++++
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~ 62 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--------------------GRPPPDVEGMTSLKVDNLTYRTSPD 62 (135)
T ss_dssp --------------------------------CCS--------------------CCSCSSGGGCCCEEEECCCSSCHHH
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCc--------------------CCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 3478889999999999999999876655431 111 1122335567899999999999999
Q ss_pred HHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 125 DLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 125 ~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
+|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|.|..++..
T Consensus 63 ~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 63 TLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 9999999999999999987643 4599999999999999999999999999 77788877655
No 197
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.2e-16 Score=126.78 Aligned_cols=81 Identities=22% Similarity=0.435 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH-hCCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 46779999999999999999999 48999999999999998
Q ss_pred CCCCC
Q 022425 82 GGRRH 86 (297)
Q Consensus 82 ~~~~~ 86 (297)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 198
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=9.1e-17 Score=125.06 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC---CcEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~~ 79 (297)
+.++|||+|||+.+|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..+. +++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999965 4567899999999999999999999998776 49999999
Q ss_pred cc
Q 022425 80 AH 81 (297)
Q Consensus 80 ~~ 81 (297)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 199
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.2e-16 Score=123.56 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--cEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~ 78 (297)
.+.++|||+|||..+|+++|+++|++||.|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45678999999999999999999999999988 999999
Q ss_pred Ec
Q 022425 79 LA 80 (297)
Q Consensus 79 ~~ 80 (297)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 200
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.5e-16 Score=125.65 Aligned_cols=78 Identities=15% Similarity=0.371 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.++++|.+|+..+ +..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47999999999999999999999999999999965 4667899999999999999999855 56999999999998754
Q ss_pred C
Q 022425 84 R 84 (297)
Q Consensus 84 ~ 84 (297)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=2e-16 Score=112.94 Aligned_cols=80 Identities=33% Similarity=0.508 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
+...++|||+|||+.+++++|+++|.+|| .|..+.+......|||||+|.+.++|++|++.|||..+.| +.|.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 44568999999999999999999999999 9999998766667899999999999999999999999999 888888
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 87644
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=1.9e-16 Score=112.10 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHHhcCCCeeEEEEecC-----CCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 3 SRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 3 ~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~V~~~~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
..|+++|+|.|+ |..+. +++|+++|++||+|..|.|+.+ +.++|||||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 568999999999 43443 4789999999999999999654 25689999999999999999999999
Q ss_pred cccCCcEEEEEEcc
Q 022425 68 YNFDGYRLRVELAH 81 (297)
Q Consensus 68 ~~~~g~~i~v~~~~ 81 (297)
..|+|+.|.|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 203
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=3.1e-16 Score=131.69 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 81 (297)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999998533 689999999999999999999999999 9999999985
No 204
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=2.6e-16 Score=121.49 Aligned_cols=76 Identities=32% Similarity=0.585 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc--EEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY--RLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~i~v~~ 79 (297)
+.++|||+|||..+|+++|.++|++||.|..+.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+ +|.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999964 456789999999999999999999999999996 488887
Q ss_pred c
Q 022425 80 A 80 (297)
Q Consensus 80 ~ 80 (297)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 205
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.5e-15 Score=101.66 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=67.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
....|+|+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+.++.| +.|.|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 456899999999999999999999999999999876 56799999999999999999999999999 88888765
No 206
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=124.60 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEEEEEEcc
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~ 81 (297)
.++++|||+|||..+|+++|.++|+.|| .|..|.|..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 9999999653 3899999999999999999999999999 9999999987
Q ss_pred CC
Q 022425 82 GG 83 (297)
Q Consensus 82 ~~ 83 (297)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 207
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.64 E-value=2.5e-15 Score=108.69 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
.....+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|++.|||..+.| ..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 34567999999999999999999999999999999998762 3699999999999999999999999999 6778
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|..+...
T Consensus 80 V~~a~~~ 86 (116)
T 2fy1_A 80 VEQAKKP 86 (116)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 8877655
No 208
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-15 Score=103.71 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=74.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.......+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeE
Confidence 34566789999999999999999999999999999999987543 699999999999999999999999999 888
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 898887653
No 209
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=6.7e-16 Score=125.62 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CcEEEEEEccC
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~~~~ 82 (297)
++++|||+|||..+|+++|+++|+.|| +|..|.|... .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 479999999999999999999999999 9999999542 3799999999999999999999999999 99999999875
Q ss_pred C
Q 022425 83 G 83 (297)
Q Consensus 83 ~ 83 (297)
.
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=1.9e-15 Score=109.21 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=70.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
...+|||+|||..+++++|.++|.+||.|..|.|+.+.++ |||||+|.+.++|+.|++.|||..+.| ..|.|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEE
Confidence 3468999999999999999999999999999999988653 699999999999999999999999999 7888887
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+...
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7654
No 211
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-15 Score=106.01 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
......++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3455678999999999999999999999999999999977644 5699999999999999999999999999 7888
Q ss_pred EeeccCCC
Q 022425 183 VREYDSRR 190 (297)
Q Consensus 183 v~~~~~~~ 190 (297)
|..+...+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 88887654
No 212
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-15 Score=105.45 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC--CeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~v 183 (297)
..+.++|||+|||+.+++++|+++|.+||.|..+.++.+ .+||||+|.+.++|+.|++.|++ ..+.| ..|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 456789999999999999999999999999999999876 56999999999999999999864 78999 78888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
.++..+
T Consensus 87 ~~A~~~ 92 (105)
T 1sjq_A 87 QFSNHK 92 (105)
T ss_dssp CCCSSS
T ss_pred EEcCCC
Confidence 887655
No 213
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=1.3e-15 Score=112.01 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....++|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.|++.|||..|.| ..
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS----SB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345678999999999999999999999999999999987753 3599999999999999999999999999 67
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 94 l~v~~a~~~ 102 (126)
T 3ex7_B 94 ISVDWCFVR 102 (126)
T ss_dssp CEEEESEES
T ss_pred EEEEEecCC
Confidence 777777655
No 214
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=3.7e-16 Score=124.65 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCe--eEEEEecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCc----EEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLRV 77 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V--~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~i~v 77 (297)
++++|||+|||+.+|+++|+++|++||.| ..|.|..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 56789999999999999999999999999 89988654 34569999999999999999999999999876 6777
Q ss_pred EEc
Q 022425 78 ELA 80 (297)
Q Consensus 78 ~~~ 80 (297)
.+|
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 215
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-15 Score=103.46 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=74.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 4456778999999999999999999999999999999998754 4699999999999999999999999999 788
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 888887663
No 216
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=106.11 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=75.1
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 102 ~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
..+......+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 82 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG--- 82 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT---
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 344556788999999999999999999999999999999988754 3699999999999999999999999999
Q ss_pred eeEEEEeeccCCC
Q 022425 178 RSYVRVREYDSRR 190 (297)
Q Consensus 178 ~~~i~v~~~~~~~ 190 (297)
..|.|..+...+
T Consensus 83 -~~l~V~~a~~~~ 94 (103)
T 2dnm_A 83 -RELRVQVARYGR 94 (103)
T ss_dssp -BCCEEEECSSCC
T ss_pred -cEEEEEECCcCC
Confidence 778888877653
No 217
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=4.3e-15 Score=106.19 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=70.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
.+..+|||+||++.+++++|+++|.+||.|..+.|+.+..+ |||||+|.+.++|++|++.|||..+.| ..|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 45679999999999999999999999999999999988763 599999999999999999999999999 7778
Q ss_pred EeeccC
Q 022425 183 VREYDS 188 (297)
Q Consensus 183 v~~~~~ 188 (297)
|..+..
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 877654
No 218
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-15 Score=101.68 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
......++|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|+.|+..|||..+.| ..|.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 34567789999999999999999999999999999999865 99999999999999999999999999 88899
Q ss_pred eeccCCC
Q 022425 184 REYDSRR 190 (297)
Q Consensus 184 ~~~~~~~ 190 (297)
..+....
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 8887663
No 219
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=5.5e-16 Score=111.81 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCC--CCC---CHHHHHHHHhcCCCeeEEEEecC-------CCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 4 RSSRTLYVGNLP--GDT---RMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 4 ~~~~~l~V~nL~--~~~---t~~~l~~~F~~~G~V~~~~~~~~-------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
.++++|+|.||- .++ .++||+++|++||+|..|.|+.+ +.++|||||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 478999999993 222 47899999999999999999653 235699999999999999999999999999
Q ss_pred CcEEEEEEcc
Q 022425 72 GYRLRVELAH 81 (297)
Q Consensus 72 g~~i~v~~~~ 81 (297)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 220
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-15 Score=102.70 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=73.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEecCC-CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
....++|||+|||..+++++|+ ++|.+||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+.| ..
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 4566899999999999999999 9999999999999997654 4699999999999999999999999999 88
Q ss_pred EEEeeccCCC
Q 022425 181 VRVREYDSRR 190 (297)
Q Consensus 181 i~v~~~~~~~ 190 (297)
|.|..+.+..
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 8998886653
No 221
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=105.14 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec--CCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
......++|||+|||..+++++|.++|.+||.|..+.+..+ ...+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 34567889999999999999999999999999999999987 223599999999999999999999999999 778
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 888876653
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8e-15 Score=101.09 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=70.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
.....+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEE
Confidence 4567899999999999999999999999999999998 3599999999999999999999999999 7788888
Q ss_pred ccCCC
Q 022425 186 YDSRR 190 (297)
Q Consensus 186 ~~~~~ 190 (297)
+....
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77664
No 223
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=3.1e-14 Score=102.87 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|+.|+..|||..|.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----R 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----E
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34567889999999999999999999999999999999988543 599999999999999999999999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 86 ~l~V~~a~~~~ 96 (115)
T 2dgo_A 86 QIRTNWATRKP 96 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 88888887653
No 224
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-15 Score=104.22 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=72.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.||+..+.| ..
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG----RQ 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS----CC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----eE
Confidence 355678999999999999999999999999999999988754 3599999999999999999999999999 67
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 84 l~v~~a~~~ 92 (102)
T 1x5s_A 84 IRVDQAGKS 92 (102)
T ss_dssp CEEEEEECC
T ss_pred EEEEECCCC
Confidence 778777655
No 225
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.7e-15 Score=103.90 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=74.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....++|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cE
Confidence 3567789999999999999999999999999999999987543 599999999999999999999999999 78
Q ss_pred EEEeeccCCC
Q 022425 181 VRVREYDSRR 190 (297)
Q Consensus 181 i~v~~~~~~~ 190 (297)
|.|..+....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888887653
No 226
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=3.4e-15 Score=107.06 Aligned_cols=76 Identities=13% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
....++|||+|||.. +++++|+++|.+||.|..|.+ ..+||||+|.+.++|+.|+..|||..+.| ..|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 345689999999999 999999999999999999998 34699999999999999999999999999 778888
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 87654
No 227
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9e-15 Score=102.75 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 34568999999999999999999999999999999988763 3699999999999999999999999999 788
Q ss_pred EEeeccCCCC
Q 022425 182 RVREYDSRRS 191 (297)
Q Consensus 182 ~v~~~~~~~~ 191 (297)
.|..+.....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 8888876643
No 228
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=9.1e-15 Score=102.72 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=72.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++ ||+..+.| .
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~ 79 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----K 79 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----e
Confidence 3355678999999999999999999999999999999988753 4699999999999999999 99999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 80 ~l~V~~a~~~~ 90 (99)
T 2dgs_A 80 KVEVKRAEPRD 90 (99)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCc
Confidence 78888876653
No 229
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.6e-15 Score=104.40 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
..+..+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..+.| ..|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 84 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 84 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 45678999999999999999999999999999999987643 4699999999999999999999999999 888
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 998887664
No 230
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=1.6e-15 Score=128.82 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC---Cc--E
Q 022425 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (297)
Q Consensus 2 ~~~~~~~l~V~n--L~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~--~ 74 (297)
...++++|||+| |+..+|+++|+++|++||+|..|.|.. ++|||||+|.+.++|++|++.|||..+. |+ +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 357899999999 578999999999999999999988864 4899999999999999999999998883 44 6
Q ss_pred EEEEEcc
Q 022425 75 LRVELAH 81 (297)
Q Consensus 75 i~v~~~~ 81 (297)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 231
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=2.1e-14 Score=103.73 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.||+..|.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 456689999999999999999999999999999999987643 599999999999999999999999999 888
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 888887653
No 232
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=101.61 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
...++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 4567999999999999999999999999999999998754 3699999999999999999999999999 7788
Q ss_pred EeeccCCC
Q 022425 183 VREYDSRR 190 (297)
Q Consensus 183 v~~~~~~~ 190 (297)
|..+....
T Consensus 79 V~~a~~~~ 86 (95)
T 2dnz_A 79 VGHVTERL 86 (95)
T ss_dssp EEESSCCC
T ss_pred EEEccccc
Confidence 88876653
No 233
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=6.8e-15 Score=100.99 Aligned_cols=77 Identities=10% Similarity=0.180 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.++|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|+.|+..|||..+.| ..|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 4689999999999999999999999999999998776 45699999999999999999999999999 77788
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 777544
No 234
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=2.7e-14 Score=101.04 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEE
Confidence 455689999999999999999999999999999998854 99999999999999999999999999 7888888
Q ss_pred ccCCC
Q 022425 186 YDSRR 190 (297)
Q Consensus 186 ~~~~~ 190 (297)
+....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86653
No 235
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-14 Score=100.65 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=72.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.....+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 84 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---- 84 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 344567889999999999999999999999999999999987653 599999999999999999999999999
Q ss_pred eEEEEeecc
Q 022425 179 SYVRVREYD 187 (297)
Q Consensus 179 ~~i~v~~~~ 187 (297)
..|.|..++
T Consensus 85 ~~l~v~~a~ 93 (95)
T 2cqc_A 85 RRIRVSGPS 93 (95)
T ss_dssp EEEEEECCS
T ss_pred EEEEEEecC
Confidence 778887664
No 236
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=101.65 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=65.2
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 5 SSRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 5 ~~~~l~V~nL~-------~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
....|.|.-.. ..+|+++|+++|++||+|..|.|+ +.++|||||+|.+.++|+.||+.+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 34567666554 458999999999999999999998 46799999999999999999997655 67999999
Q ss_pred EEccCCCC
Q 022425 78 ELAHGGRR 85 (297)
Q Consensus 78 ~~~~~~~~ 85 (297)
.|+.+...
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99886653
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1e-14 Score=102.23 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-------CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| .
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----H 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----e
Confidence 3467999999999999999999999999999999987654 3699999999999999999999999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 79 ~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 KLEVRISERAT 89 (98)
T ss_dssp ECEEECSSCSS
T ss_pred EEEEEEccCCC
Confidence 88888886653
No 238
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=104.20 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCC--eeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~ 182 (297)
..+..+|||+|||+ .+++++|.++|.+||.|..+.++.+. +||||+|++.++|..|++.||+. .+.| ..|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEE
Confidence 44678999999999 99999999999999999999998764 59999999999999999999864 5899 8888
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 8888754
No 239
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=99.93 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEE
Confidence 456789999999999999999999999999999999865 99999999999999999999999999 7888888
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+...
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7665
No 240
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=101.87 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
.....++|||+|||..+++++|+++|.+||.|. +.+..+...+||||+|.+.++|+.|+..|||..+.| ..|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 345678999999999999999999999999997 677777778899999999999999999999999999 677887
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 77654
No 241
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=99.52 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
....+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 4567999999999999999999999999999999998753 3599999999999999999999999999 7777
Q ss_pred EeeccC
Q 022425 183 VREYDS 188 (297)
Q Consensus 183 v~~~~~ 188 (297)
|..+..
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 777654
No 242
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-14 Score=102.65 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEcCHHHHHHHHHHh-cCCeecccee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFS 177 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~ 177 (297)
......++|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|+.|+..| |+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---
Confidence 345677899999999999999999999999999999998772 2469999999999999999999 9999999
Q ss_pred eeEEEEeeccCCC
Q 022425 178 RSYVRVREYDSRR 190 (297)
Q Consensus 178 ~~~i~v~~~~~~~ 190 (297)
..|.|..+....
T Consensus 87 -~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 -RRLVLEWADSEV 98 (107)
T ss_dssp -CBCEEEECCCCC
T ss_pred -CEEEEEeCCCCC
Confidence 778888876653
No 243
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=1.1e-14 Score=99.31 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTI 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEE
Confidence 45678999999999999999999999999999999987743 3599999999999999999999999999 677
Q ss_pred EEeec
Q 022425 182 RVREY 186 (297)
Q Consensus 182 ~v~~~ 186 (297)
.|..+
T Consensus 80 ~v~~a 84 (85)
T 3mdf_A 80 RVNLA 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 77654
No 244
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-14 Score=102.85 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
....++|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEe
Confidence 346789999999999999999999999999999999887 5699999999999999999999999999 7888888
Q ss_pred ccCCC
Q 022425 186 YDSRR 190 (297)
Q Consensus 186 ~~~~~ 190 (297)
+....
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77654
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=102.75 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=72.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.+..+.++|||+|||..+++++|+++|.+|| |..|.++.+.. .+||||+|.+.++|++|+ .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3455678999999999999999999999999 99999988754 369999999999999999 999999999
Q ss_pred eEEEEeeccCCCC
Q 022425 179 SYVRVREYDSRRS 191 (297)
Q Consensus 179 ~~i~v~~~~~~~~ 191 (297)
..|.|..+.....
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 7888888876643
No 246
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-14 Score=100.78 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=72.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....++|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEE
Confidence 3456789999999999999999999999999999999987653 599999999999999999999999999 778
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 88876544
No 247
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=100.88 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=69.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCe--eccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~--~~g~~~~~~i~v 183 (297)
..+..+|||+|||+.+++++|.++|.+||.|..+.+... .++|||+|.+.++|..|++.|++.. +.| ..|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEE
Confidence 346779999999999999999999999999999998854 4699999999999999999999886 678 78888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 887654
No 248
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-14 Score=102.27 Aligned_cols=82 Identities=28% Similarity=0.345 Sum_probs=73.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----K 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 4456778999999999999999999999999999999988763 3599999999999999999999999999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+...
T Consensus 86 ~l~v~~a~~~ 95 (105)
T 1x5u_A 86 PIRVNKASAH 95 (105)
T ss_dssp BCEEEETTTT
T ss_pred EEEEEECCCC
Confidence 7888887665
No 249
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-14 Score=100.70 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=72.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
......+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3456789999999999999999999999999999999987632 599999999999999999999999999 788
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+.+.
T Consensus 89 ~v~~a~~~ 96 (100)
T 2do4_A 89 KVAISNSG 96 (100)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 88887665
No 250
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=3.5e-16 Score=110.62 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=58.8
Q ss_pred cCCCCCCCHHHHHHHH------------hcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEE
Q 022425 12 GNLPGDTRMREVEDLF------------YKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F------------~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 77 (297)
.||+.++|+++|.++| ++||+|..|.|+.+ +.++|||||+|.++++|.+|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455677666666 99999999999653 567999999999999999999999999999999999
Q ss_pred EEc
Q 022425 78 ELA 80 (297)
Q Consensus 78 ~~~ 80 (297)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=2.9e-14 Score=100.87 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=72.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.+..+.++|||+|||..+++++|+++|.+|| |..|.++.+..+ +||||+|.+.++|+.|+ .|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 4456678999999999999999999999997 999999988653 59999999999999999 899999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 88888887653
No 252
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=100.78 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 102 ~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
.........+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 85 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG--- 85 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---
Confidence 334456778999999999999999999999999999999988754 3699999999999999999999999999
Q ss_pred eeEEEEeec
Q 022425 178 RSYVRVREY 186 (297)
Q Consensus 178 ~~~i~v~~~ 186 (297)
..|.|..+
T Consensus 86 -~~l~v~~a 93 (94)
T 2e5h_A 86 -RVIKASIA 93 (94)
T ss_dssp -EEEEEEEC
T ss_pred -cEEEEEec
Confidence 77777664
No 253
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=1.9e-14 Score=102.58 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.......++|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|+..|||..+.| .
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----c
Confidence 345567889999999999999999999999999999999987643 599999999999999999999999999 6
Q ss_pred EEEEeec
Q 022425 180 YVRVREY 186 (297)
Q Consensus 180 ~i~v~~~ 186 (297)
.|.|..+
T Consensus 99 ~l~V~~a 105 (107)
T 3ulh_A 99 PMNIQLV 105 (107)
T ss_dssp ECEEEEE
T ss_pred EEEEEEe
Confidence 6666654
No 254
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.4e-14 Score=102.00 Aligned_cols=83 Identities=10% Similarity=0.149 Sum_probs=73.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhc------CCeec
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD------RSEFR 173 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~------g~~~~ 173 (297)
.......+|||+|||..+++++|.++|.+||.|..|.++.+.. .+||||+|.+.++|..|+..|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 3455678999999999999999999999999999999997754 4699999999999999999999 99999
Q ss_pred cceeeeEEEEeeccCCC
Q 022425 174 NAFSRSYVRVREYDSRR 190 (297)
Q Consensus 174 g~~~~~~i~v~~~~~~~ 190 (297)
| ..|.|..+....
T Consensus 90 g----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 G----RQLKVDLAVTRD 102 (111)
T ss_dssp S----CEEEEECCCCCC
T ss_pred C----EEEEEEECCCCc
Confidence 9 788888877653
No 255
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.58 E-value=2e-14 Score=102.30 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCee---cccee
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFS 177 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~---~g~~~ 177 (297)
......+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.|||..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g--- 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN--- 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---
Confidence 355678999999999999999999999999999999988654 46999999999999999999999987 77
Q ss_pred eeEEEEeeccCCC
Q 022425 178 RSYVRVREYDSRR 190 (297)
Q Consensus 178 ~~~i~v~~~~~~~ 190 (297)
..|.|..+....
T Consensus 86 -~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 -RPIQVKPADSES 97 (106)
T ss_dssp -SCCEEEECCCCS
T ss_pred -ceEEEEECCccc
Confidence 677787776653
No 256
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=100.44 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.......+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CE
Confidence 34567789999999999999999999999999999999987653 599999999999999999999999999 77
Q ss_pred EEEeecc
Q 022425 181 VRVREYD 187 (297)
Q Consensus 181 i~v~~~~ 187 (297)
|.|..++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 7776654
No 257
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=102.34 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=69.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
++|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|+.|++.|||..+.| ..|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 47999999999999999999999999999999988 66799999999999999999999999999 67888887665
No 258
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=1.6e-14 Score=100.78 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=70.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..+.| ..|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 46999999999999999999999999999999988754 4699999999999999999999999999 788888
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 87654
No 259
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=101.47 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=71.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.+.++|||+|||..+++++|.++|.+||.|..+ .++.+.. .+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPI 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 356799999999999999999999999999999 8887643 3699999999999999999999999999 788
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 79 ~v~~a~~~~ 87 (96)
T 1x5t_A 79 TVSYAFKKD 87 (96)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccC
Confidence 888876653
No 260
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.58 E-value=2.4e-14 Score=97.04 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=69.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 5899999999999999999999999999999998754 3599999999999999999999999999 7788887
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+.++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 7654
No 261
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=101.51 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=70.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeec--cceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~--g~~~~~~i~v 183 (297)
..+.++|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|+.|++.|||..+. | ..|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEE
Confidence 345689999999999999999999999999999998876 569999999999999999999999999 7 67788
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 877655
No 262
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-14 Score=98.77 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=69.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc--CCeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~~i~v 183 (297)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|++.|+ +..+.| ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 456789999999999999999999999999999988875 5699999999999999999874 678999 78888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
.++...
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 887655
No 263
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=100.73 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....+|||+|||..+++++|+++|.+||.|. .+.+..+..+ +||||+|.+.++|+.|+..|||..+.|......
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999988643 599999999999999999999999999554444
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 888887655
No 264
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=1.3e-14 Score=103.39 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=70.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
......++|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.| ..|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEE
Confidence 335677899999999999999999999999999999998 5699999999999999999999999999 78888
Q ss_pred eeccCCC
Q 022425 184 REYDSRR 190 (297)
Q Consensus 184 ~~~~~~~ 190 (297)
..+....
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 8876653
No 265
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-14 Score=103.77 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=69.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC--CeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~v 183 (297)
..+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .+||||+|.+.++|.+|++.|++ ..+.| ..|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 456789999999999999999999999999999999876 46999999999999999999874 68899 77888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+...
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 887655
No 266
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-14 Score=100.22 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=68.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCC--eeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~v 183 (297)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|++.|++. .+.| ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 456789999999999999999999999999999988765 569999999999999999998765 4888 77788
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
.++...
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 887655
No 267
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=2.9e-14 Score=98.70 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=70.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
....++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG----REIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT----BCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 45678999999999999999999999999999999987532 3699999999999999999999999999 67777
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 777655
No 268
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.3e-14 Score=97.75 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.....+|||+|||..+++++|+++|.+| |.|..+.+.+ +||||+|.+.++|+.|+..|||..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 4567899999999999999999999999 9999888764 399999999999999999999999999 88889
Q ss_pred eeccCCC
Q 022425 184 REYDSRR 190 (297)
Q Consensus 184 ~~~~~~~ 190 (297)
..+....
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 8887653
No 269
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=103.38 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCC-------CcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
.....+|||+|||+.+++++|. ++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g- 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG- 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT-
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC-
Confidence 4567899999999999999999 9999999999999987754 2699999999999999999999999999
Q ss_pred eeeeEEEEeeccCCC
Q 022425 176 FSRSYVRVREYDSRR 190 (297)
Q Consensus 176 ~~~~~i~v~~~~~~~ 190 (297)
..|.|..+....
T Consensus 91 ---r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 ---RTLKASLGTTKY 102 (111)
T ss_dssp ---EEEEEESCCCCS
T ss_pred ---EEEEEEeccccc
Confidence 888998887653
No 270
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=99.66 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.....++|||+|||+.+++++|+++|.+||.|..+ .++.+..++.|||+|.+.++|..|+..|||..+.| ..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEE
Confidence 34567899999999999999999999999999999 58888877789999999999999999999999999 67777
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 776544
No 271
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=6.1e-15 Score=101.79 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=67.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhc-CCeeccceeeeEEEE
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 183 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~-g~~~~g~~~~~~i~v 183 (297)
.+|||+|||..+++++|.++|.+|| .|..|.++.+.. .|||||+|.+.++|++|++.++ +..+.| ..|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 899999987654 3699999999999999999874 567889 88899
Q ss_pred eeccCCC
Q 022425 184 REYDSRR 190 (297)
Q Consensus 184 ~~~~~~~ 190 (297)
+.+.++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 8876653
No 272
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=9.3e-14 Score=103.87 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=74.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.......+|||+|||..+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|.+|++.|||..+.| .
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 3455678999999999999999999999999999999998865 3599999999999999999999999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 88888887653
No 273
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-14 Score=99.98 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCe-eccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~-~~g~~~~~~ 180 (297)
..+.++|||+|||..+++++|.++|.+ ||.|..+.++.+..+ +||||+|.+.++|..|+..|||.. +.| ..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g----~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS----KP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC----Ee
Confidence 456789999999999999999999999 999999999987632 599999999999999999999999 999 66
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 82 l~v~~a~~~ 90 (104)
T 2dhg_A 82 VRLSVAIPK 90 (104)
T ss_dssp CCCCBCCCC
T ss_pred EEEEEccCC
Confidence 777776554
No 274
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.3e-14 Score=101.12 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=71.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG----QPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS----SBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC----cEE
Confidence 456789999999999999999999999999999999987653 699999999999999999999999999 667
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+...
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 77766544
No 275
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=1.3e-14 Score=103.86 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCC--CCC--------CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 022425 4 RSSRTLYVGNLP--GDT--------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (297)
Q Consensus 4 ~~~~~l~V~nL~--~~~--------t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (297)
.++++|.|.||= ... .++||+++|++||.|.+|.|..+ .++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 578899999993 221 24578999999999999999654 3589999999999999999999999999999
Q ss_pred EEEEEEcc
Q 022425 74 RLRVELAH 81 (297)
Q Consensus 74 ~i~v~~~~ 81 (297)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 276
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=8.5e-15 Score=121.45 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec--CCCCCcEEEEEEcChHHHHHHHHhcCC-cccC---CcEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFD---GYRLRV 77 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~---g~~i~v 77 (297)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999964 567789999999999999999999954 4544 999999
Q ss_pred EEccCCC
Q 022425 78 ELAHGGR 84 (297)
Q Consensus 78 ~~~~~~~ 84 (297)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998654
No 277
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=2.1e-14 Score=105.71 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=73.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
....+.++|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..|.| .
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~ 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3456678999999999999999999999999999999997743 4699999999999999999999999999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+...
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 7888877655
No 278
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.3e-14 Score=99.23 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=70.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|||..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 456689999999999999999999999999999998865 5699999999999999999999999999 7788888
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+...
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7665
No 279
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=2.8e-14 Score=107.84 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
+.....|||+||++.+++++|.++|.+||.|..|.+.....++||||+|.+.++|+.|++.|||..|.|. .+.|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEE
Confidence 4455679999999999999999999999999999998776677999999999999999999999999641 15678888
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
++..
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7654
No 280
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=4.5e-14 Score=99.14 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
.+....++|||+|||..+++++|+++|.+||.|.. +.+..+.. .|||||+|.+.++|+.|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44667889999999999999999999999999999 99988754 3599999999999999999999999
Q ss_pred eccceeeeEEEEeec
Q 022425 172 FRNAFSRSYVRVREY 186 (297)
Q Consensus 172 ~~g~~~~~~i~v~~~ 186 (297)
+.| ..|.|..+
T Consensus 88 ~~g----~~l~V~~A 98 (99)
T 2la6_A 88 FSG----NPIKVSFA 98 (99)
T ss_dssp SSS----SBCEEEEC
T ss_pred eCC----cEEEEEec
Confidence 999 56666554
No 281
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.9e-14 Score=101.06 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
....++|||+|||..+++++|+++|.+||.|. .+.+..+.. .+||||+|.+.++|+.|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 688887743 359999999999999999999999999
Q ss_pred cceeeeEEEEeeccCCC
Q 022425 174 NAFSRSYVRVREYDSRR 190 (297)
Q Consensus 174 g~~~~~~i~v~~~~~~~ 190 (297)
| ..|.|..+....
T Consensus 92 g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 G----SKLKVSLARKKP 104 (113)
T ss_dssp T----EECEEECSSCCC
T ss_pred C----CEEEEEECCCCC
Confidence 9 888888877653
No 282
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=5.3e-14 Score=98.29 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCCCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 104 VSRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
......++|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|..|+..|||..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 3456778999999998 99999999999999999999985 5699999999999999999999999999 7788
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|+.+...
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 8776543
No 283
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=8.5e-14 Score=98.82 Aligned_cols=83 Identities=22% Similarity=0.213 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
....++|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.|. ....|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCccEE
Confidence 456789999999999999999999999999999999988643 5999999999999999999999998872 113566
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|..+...
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 7776655
No 284
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=100.98 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
.....++|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|+..|||..+.| ..|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEE
Confidence 3456789999999999999999999999998732222112334699999999999999999999999999 888888
Q ss_pred eccCCC
Q 022425 185 EYDSRR 190 (297)
Q Consensus 185 ~~~~~~ 190 (297)
.+....
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 887663
No 285
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=99.40 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC-CeeccceeeeEEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRV 183 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g-~~~~g~~~~~~i~v 183 (297)
....++|||+|||..+++++|+++|.+||. |..+.+. ..+||||+|.+.++|+.|+..||| ..+.| ..|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEE
Confidence 345679999999999999999999999999 5555553 246999999999999999999999 99999 88888
Q ss_pred eeccCCC
Q 022425 184 REYDSRR 190 (297)
Q Consensus 184 ~~~~~~~ 190 (297)
..+....
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 8887653
No 286
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=100.75 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCe----eccc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE----FRNA 175 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~----~~g~ 175 (297)
.....+|||+|||+.+++++|.++|++||. +..|.++.++. .|||||+|.+.++|++|++.|||.. ++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 455679999999999999999999999995 66788887754 3699999999999999999999984 778
Q ss_pred eeeeEEEEeeccC
Q 022425 176 FSRSYVRVREYDS 188 (297)
Q Consensus 176 ~~~~~i~v~~~~~ 188 (297)
+.|.|+.++.
T Consensus 85 ---r~i~V~~Aks 94 (95)
T 2lkz_A 85 ---KTIGVDFAKS 94 (95)
T ss_dssp ---EEEEEEECCC
T ss_pred ---EEEEEEEccC
Confidence 7888887753
No 287
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.55 E-value=4.6e-14 Score=101.11 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEE
Confidence 45678999999999999999999999999999999987754 3699999999999999999999999999 778
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+...
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 88877654
No 288
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=8.7e-14 Score=99.17 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=72.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.......+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..+.| .
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----R 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----S
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----E
Confidence 33556789999999999999999999999999999999987553 599999999999999999999999999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+..+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 7778776554
No 289
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.8e-14 Score=96.03 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHh-cCCeeccceeeeEEEE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 183 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~v 183 (297)
......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| +|..+.| ..|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEE
Confidence 3456789999999999999999999999999999999875 469999999999999999999 9999999 66666
Q ss_pred eec
Q 022425 184 REY 186 (297)
Q Consensus 184 ~~~ 186 (297)
+++
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 290
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=101.96 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=72.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.......+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 3355678999999999999999999999999999999987754 4699999999999999999999999999 778
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 88776543
No 291
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.5e-14 Score=100.11 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
...++|||+|||..+++++|.++|.+||.|..+.+. ...+||||+|.+.++|..|+..|||..+.| ..|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 456899999999999999999999999999999988 445799999999999999999999999999 67777665
Q ss_pred cC
Q 022425 187 DS 188 (297)
Q Consensus 187 ~~ 188 (297)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 292
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.4e-14 Score=98.84 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=73.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|+++|.+||.|..|.++.+..+ +||||+|.+.++|++|+.. |+..|.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34567789999999999999999999999999999999988553 5999999999999999998 9999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 88888876653
No 293
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.2e-14 Score=100.93 Aligned_cols=81 Identities=7% Similarity=0.081 Sum_probs=71.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
..+.++|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|+..|||..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEE
Confidence 3467899999999999999999999999998 66777666666899999999999999999999999999 778
Q ss_pred EEeeccCCC
Q 022425 182 RVREYDSRR 190 (297)
Q Consensus 182 ~v~~~~~~~ 190 (297)
.|..+....
T Consensus 98 ~v~~a~~~~ 106 (115)
T 2cpx_A 98 VIEFGKNKK 106 (115)
T ss_dssp EEEECCCCS
T ss_pred EEEEccCCC
Confidence 888877664
No 294
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4e-14 Score=99.21 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 345678999999999999999999999999998766666543 3699999999999999999999999999 77
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 888776543
No 295
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=9.6e-14 Score=101.65 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
+......++|||+|||..+++++|+++|.+||.|..+.+..+. ..+||||+|.+.++|..|+..|||..+.| .
T Consensus 29 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~ 104 (124)
T 2kt5_A 29 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----R 104 (124)
T ss_dssp CCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 3456778999999999999999999999999999999999876 34699999999999999999999999999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+...
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 7788776554
No 296
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1e-13 Score=95.74 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.......+|||+|||..+++++|+++|.+| .|..+.++.+.. .+||||+|.+.++|+.|+. |||..+.| ..
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cE
Confidence 345667899999999999999999999999 999999998844 3599999999999999999 99999999 78
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 888877654
No 297
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=1.2e-13 Score=105.41 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+|||..+++++|+++|.+||.|..|.|+.+..+ +||||+|.+.++|++|+..||+..|.| ..|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 456789999999999999999999999999999999988653 599999999999999999999999999 788
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|+.+...
T Consensus 112 ~V~~a~~~ 119 (156)
T 1h2v_Z 112 RTDWDAGF 119 (156)
T ss_dssp EEEEESCC
T ss_pred EEEECCCC
Confidence 88888765
No 298
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.1e-14 Score=99.38 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
..+.++|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|+.|+..|||..+.| ..|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG----KKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT----TTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC----cEEEEE
Confidence 45678999999998 99999999999999999999996 4599999999999999999999999999 566666
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 66544
No 299
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=102.98 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=67.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
...++|||+|||..+++++|+++|.+||.|..|.+.. ..+||||+|.+.++|+.|+..|||..+.| ..|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH----VPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS----SBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC----eEEEEEEC
Confidence 3567999999999999999999999999999988875 45699999999999999999999999999 66677766
Q ss_pred cC
Q 022425 187 DS 188 (297)
Q Consensus 187 ~~ 188 (297)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 44
No 300
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=8.8e-14 Score=100.95 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=69.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.....++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|||..+.| ..
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----KR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 345678999999999999999999999999999999987754 4699999999999999999999999999 66
Q ss_pred EEEeec
Q 022425 181 VRVREY 186 (297)
Q Consensus 181 i~v~~~ 186 (297)
|.|+.+
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 666654
No 301
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=1.7e-14 Score=99.42 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=64.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.+|||+|||..+++++|+++|.+|| .|..+.+..+..+ |||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 9999999988543 599999999999999999999999999 77777
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..+.+.
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 776554
No 302
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3e-13 Score=94.48 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
....++|||+|| .+++++|.++|.+||.|..|.+. ...+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEE
Confidence 456789999996 89999999999999999999885 455699999999999999999999999999 8888988
Q ss_pred ccCCC
Q 022425 186 YDSRR 190 (297)
Q Consensus 186 ~~~~~ 190 (297)
+....
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86653
No 303
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.3e-13 Score=98.42 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=71.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3355778999999999999999999999999999999998754 36999999999999999999998 8999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+...
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 8888887544
No 304
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=7.6e-14 Score=102.05 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
..+..+|||+||++.+++++|+ ++|.+||.|..|.+... ...|||||+|.+.++|..|+..|||..+.| ..
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g----r~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG----NP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT----SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC----CE
Confidence 3457899999999999998866 68999999999888653 345799999999999999999999999999 67
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|.++...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 778777654
No 305
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.51 E-value=1.5e-13 Score=94.49 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=68.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+ .|||..+.| ..|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 46899999999999999999999999999999998753 469999999999999999 999999999 788888
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.++..
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 77653
No 306
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.51 E-value=1.3e-13 Score=94.33 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=66.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....+|||+|||..+++++|.++|.+||.|..+.++.+.. .+||||+|.+.++|++|++ +++..+.| ..|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 45678999999999999999999999999999999998765 3599999999999999996 58888999 667
Q ss_pred EEee
Q 022425 182 RVRE 185 (297)
Q Consensus 182 ~v~~ 185 (297)
.|..
T Consensus 83 ~v~~ 86 (87)
T 3s7r_A 83 DPKK 86 (87)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 307
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=99.13 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=63.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..|||..+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 4567999999999999999999999999999999988754 4699999999999999999999999998
No 308
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=1e-13 Score=100.06 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=70.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
.....+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 45667999999999999999999999999999999987654 4699999999999999999999999999 677777
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+...
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 66543
No 309
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=98.98 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=66.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
.....+|||+|||..+++++|.++|.+||.|..|.++.+.. .|||||+|.+.++|..|+. ++|..+.| ..|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g----r~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE----TDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT----TTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC----EEEE
Confidence 34567999999999999999999999999999999998754 4699999999999999999 99999999 5555
Q ss_pred Eee
Q 022425 183 VRE 185 (297)
Q Consensus 183 v~~ 185 (297)
|..
T Consensus 83 V~~ 85 (103)
T 1s79_A 83 ILF 85 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 310
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=104.45 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=68.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
...+|||+||+..+++++|.++|.+|| .|..+.++.+..+ |||||+|.+.++|+.|+..|||..|.| ..|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 9999999988653 599999999999999999999999999 777
Q ss_pred EEeecc
Q 022425 182 RVREYD 187 (297)
Q Consensus 182 ~v~~~~ 187 (297)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 777664
No 311
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.50 E-value=1.6e-13 Score=100.41 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
...+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+ .|||..+.| ..|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 457999999999999999999999999999999988743 359999999999999999 799999999 78888
Q ss_pred eeccCC
Q 022425 184 REYDSR 189 (297)
Q Consensus 184 ~~~~~~ 189 (297)
..++..
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 887654
No 312
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.6e-13 Score=93.49 Aligned_cols=80 Identities=24% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|+++|.+||.|..|.++.+..+ +||||+|.+.++|+.|+. ++..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~ 83 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----R 83 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----E
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----e
Confidence 34556789999999999999999999999999999999988653 599999999999999999 4668888 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|.|..+...
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cqg_A 84 WCDCKLPNSK 93 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEecCCC
Confidence 8888887665
No 313
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=2.1e-13 Score=99.21 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE-EEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
+..-..|||+||++.+++++|.++|.+||.|..|.+.... .++ |||+|.+.++|+.|++.|||..|.|. ...|+++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~ 101 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRID 101 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEE
Confidence 4455678899999999999999999999999999888765 455 99999999999999999999999872 2567788
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
+++..
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 77654
No 314
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=5.7e-13 Score=96.54 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=66.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE-EEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
....|||+||++.+++++|.++|.+||.|..|.++.. .|| |||+|.+.++|..|++.|||..|.|.. ..|.|.++
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~A 99 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYA 99 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEe
Confidence 3345789999999999999999999999999998764 375 999999999999999999999998721 36778777
Q ss_pred cCC
Q 022425 187 DSR 189 (297)
Q Consensus 187 ~~~ 189 (297)
+..
T Consensus 100 k~~ 102 (124)
T 2e5i_A 100 RPT 102 (124)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 315
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=4.4e-14 Score=98.36 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|+..|||..+.| ..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEE
Confidence 345689999999999999999999999999988777765443 599999999999999999999999999 777
Q ss_pred EEeecc
Q 022425 182 RVREYD 187 (297)
Q Consensus 182 ~v~~~~ 187 (297)
.|..+.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 776653
No 316
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=97.59 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
.......+|||.|||+.+++++|+++|.+||. +.|.|+.+..+ +||||+|.+.++|++||+ +|+..|.| +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g----r~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH----RY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS----SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC----cE
Confidence 44566789999999999999999999999994 58999887643 599999999999999995 89999999 56
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 84 i~V~~~~~~ 92 (102)
T 1wez_A 84 VELFLNSTA 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 666655433
No 317
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=98.35 Aligned_cols=76 Identities=28% Similarity=0.328 Sum_probs=66.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
.....+|||+|||+.+++++|+++|.+| .|..|.|+.+.. .|||||+|.+.++|++|+ .+|+..|+| +.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEE
Confidence 3456799999999999999999999999 899999987754 469999999999999999 699999999 7777
Q ss_pred Eeecc
Q 022425 183 VREYD 187 (297)
Q Consensus 183 v~~~~ 187 (297)
|..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 76654
No 318
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-13 Score=98.98 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
...++|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+.. ++..|.| ..|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 4568999999999999999999999999999999998754 36999999999999999998 9999999 8889
Q ss_pred EeeccCCC
Q 022425 183 VREYDSRR 190 (297)
Q Consensus 183 v~~~~~~~ 190 (297)
|..+..+.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 98887663
No 319
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-13 Score=101.66 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 102 RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 102 ~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
.........+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.|
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--- 132 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG--- 132 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 344556788999999999999999999999999999999987743 4699999999999999999999999999
Q ss_pred eeEEEEee
Q 022425 178 RSYVRVRE 185 (297)
Q Consensus 178 ~~~i~v~~ 185 (297)
..|.|..
T Consensus 133 -~~l~v~~ 139 (140)
T 2ku7_A 133 -RTIRVNL 139 (140)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEEe
Confidence 6677654
No 320
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=9.8e-14 Score=97.00 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
..+.++|||+|||..+++++|. ++|.+||.|..+.+... ...+||||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 4567899999999999999999 99999999999988742 234699999999999999999999999999 78
Q ss_pred EEEeeccCC
Q 022425 181 VRVREYDSR 189 (297)
Q Consensus 181 i~v~~~~~~ 189 (297)
|.|..+...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 888877654
No 321
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=100.95 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=68.1
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC--CeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~ 182 (297)
..+.++|||+|||+. +++++|.++|.+||.|..+.+... .+||||+|.+.++|..|++.||+ ..+.| +.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 456789999999998 999999999999999999999754 56999999999999999998864 56888 7778
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|..+...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 8877654
No 322
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=92.37 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=63.4
Q ss_pred CCceEEEeCCCCCCCHHH----HHHHHHhc-CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 108 SDYRVLVTGLPSSASWQD----LKDHMRRA-GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
..+.|||.|||..+++++ |.++|.+| |+|..|. +|+|||.|.+.++|..|++.|||..+.| +.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG----NRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC----ceEE
Confidence 334499999999999887 55899999 5999882 3799999999999999999999999999 7888
Q ss_pred EeeccCCC
Q 022425 183 VREYDSRR 190 (297)
Q Consensus 183 v~~~~~~~ 190 (297)
|..++..+
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 88887664
No 323
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=97.77 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.+......+|||+|||+.+++++|+++|.+||.|.. +.+..+.. .|||||+|.+.++|++|+.. |+..++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g---- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH---- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS----
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC----
Confidence 344567789999999999999999999999999987 77776633 46999999999999999997 9999999
Q ss_pred eEEEEeecc
Q 022425 179 SYVRVREYD 187 (297)
Q Consensus 179 ~~i~v~~~~ 187 (297)
+.|.|..+.
T Consensus 84 r~i~v~~~~ 92 (104)
T 1wg5_A 84 RYIEIFKSS 92 (104)
T ss_dssp SCCEEEEEC
T ss_pred cEEEEEECC
Confidence 566666554
No 324
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.7e-13 Score=98.74 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
...++|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.|+ .|||..|.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 3567999999999999999999999999999999997754 369999999999999999 999999999 7888
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|..+...
T Consensus 98 V~~a~~~ 104 (114)
T 2cq4_A 98 VQASQAE 104 (114)
T ss_dssp EEEHHHH
T ss_pred EEecCCC
Confidence 8876554
No 325
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=97.62 Aligned_cols=79 Identities=29% Similarity=0.373 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..+.| ..|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALR 81 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEE
Confidence 34579999999999999999999999999999999987543 599999999999999999999999999 6778
Q ss_pred EeeccCC
Q 022425 183 VREYDSR 189 (297)
Q Consensus 183 v~~~~~~ 189 (297)
|..+...
T Consensus 82 v~~a~~~ 88 (104)
T 1p1t_A 82 VDNAASE 88 (104)
T ss_dssp EEETTCT
T ss_pred EEeCCCc
Confidence 8777654
No 326
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=98.14 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=65.0
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee-ccceeeeEEEE
Q 022425 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 183 (297)
Q Consensus 107 ~~~~~l~V--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~-~g~~~~~~i~v 183 (297)
.+..+||| +||+..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|||.++ ..-.....+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45678999 779999999999999999999999887643 56999999999999999999999988 21101255666
Q ss_pred eeccC
Q 022425 184 REYDS 188 (297)
Q Consensus 184 ~~~~~ 188 (297)
.....
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 66543
No 327
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.2e-14 Score=107.91 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=65.9
Q ss_pred cEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 022425 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (297)
Q Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~ 125 (297)
++||.+|..++-+..++.++... +.|...--.. +............+|||.|||+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888998888888877755433 2222110000 0011122345678999999999999999
Q ss_pred HHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 126 LKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 126 l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
|+++|.+|| ++.|.|+.+.. .+||||+|.+.++|++|| .+|+..|.| +.|.|..+...
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g----R~i~V~~a~~~ 123 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH----RYIELFLNSTT 123 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS----CCCCCEECCCS
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC----EEEEEEECCCC
Confidence 999999999 77899887754 469999999999999999 799999999 56666655443
No 328
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=1.2e-13 Score=96.99 Aligned_cols=77 Identities=19% Similarity=0.183 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCC------CCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 107 RSDYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 107 ~~~~~l~V~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
...++|||+|||. .+++++|.++|.+||.|..+.++.+..+ |||||+|.+.++|++|+..|||..+.|.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~- 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK- 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS-
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC-
Confidence 3467999999999 9999999999999999999999988753 6999999999999999999999999982
Q ss_pred eeeEEEEeec
Q 022425 177 SRSYVRVREY 186 (297)
Q Consensus 177 ~~~~i~v~~~ 186 (297)
..|.|..+
T Consensus 83 --r~l~V~~a 90 (100)
T 3ns6_A 83 --HRLFLYTM 90 (100)
T ss_dssp --CBCEEEES
T ss_pred --eEEEEEEC
Confidence 34455444
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=9.3e-14 Score=96.93 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
.....+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|..|+..|||..+.| ..|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 4567899999999999999999999999988777 2223345699999999999999999999999999 7888888
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+...
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7655
No 330
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4e-13 Score=93.27 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=63.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc-EEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
...+|||+|||..+++++|+++|.+||.|..| +.+..++ ||||+|.+.++|.+|+. |||..+.| ..|.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 45699999999999999999999999999987 3333222 99999999999999999 99999999 77777765
Q ss_pred cCC
Q 022425 187 DSR 189 (297)
Q Consensus 187 ~~~ 189 (297)
...
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 443
No 331
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=1.7e-13 Score=99.28 Aligned_cols=79 Identities=27% Similarity=0.372 Sum_probs=69.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
+.....++|||+|||+.+++++|+++|..||. |..|.+..+..+ |||||+|.+.++|++|++ ||+..|.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 33556789999999999999999999999999 889999887653 599999999999999999 99999999
Q ss_pred eeEEEEeecc
Q 022425 178 RSYVRVREYD 187 (297)
Q Consensus 178 ~~~i~v~~~~ 187 (297)
+.|.|..+.
T Consensus 88 -r~i~V~~a~ 96 (118)
T 2db1_A 88 -RYIEVFKSH 96 (118)
T ss_dssp -EEEEEEEEC
T ss_pred -eEEEEEECC
Confidence 777776653
No 332
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.3e-13 Score=93.75 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=67.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
......++|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|++|++.|||..|.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 82 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----N 82 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----e
Confidence 3456778999999999999999999999874 455555543 3699999999999999999999999999 7
Q ss_pred EEEEeeccCCC
Q 022425 180 YVRVREYDSRR 190 (297)
Q Consensus 180 ~i~v~~~~~~~ 190 (297)
.|.|..+....
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 88888887664
No 333
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.7e-13 Score=95.98 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=71.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccce----ee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SR 178 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~----~~ 178 (297)
....++|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.+.. ..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456689999999999999999999999999999999988632 59999999999999999999999997633 23
Q ss_pred eEEEEeeccC
Q 022425 179 SYVRVREYDS 188 (297)
Q Consensus 179 ~~i~v~~~~~ 188 (297)
..|.|..+.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 5677776654
No 334
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.47 E-value=5.1e-14 Score=94.99 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=59.4
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEec--CCCcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 110 ~~l~V~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
++|||+|||..+ ++++|.++|.+||.|..+.+... ...|||||+|.+.++|..|+..|||..+.|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 67999999999999999998743 2246999999999999999999999999993
No 335
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=1.2e-13 Score=102.25 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=70.2
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 103 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
.+.....++|||+|||+.+++++|+++|.+||. |..|.+..+..+ |||||+|.+.++|++|++ ||+..+.|
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-- 114 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-- 114 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC--
Confidence 344567789999999999999999999999999 788999887653 599999999999999999 99999999
Q ss_pred eeeEEEEeecc
Q 022425 177 SRSYVRVREYD 187 (297)
Q Consensus 177 ~~~~i~v~~~~ 187 (297)
+.|.|..+.
T Consensus 115 --r~i~V~~a~ 123 (136)
T 2hgl_A 115 --RYIEVFKSH 123 (136)
T ss_dssp --SEEEEEECC
T ss_pred --EEEEEEECC
Confidence 677776653
No 336
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=97.32 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEecC--CCcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 106 RRSDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
....++|||+|||..+ ++++|.++|.+||.|..+.+.... ..|||||+|.+.++|..|+..|||..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g--- 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK--- 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST---
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC---
Confidence 3456799999999999 789999999999999999988432 24699999999999999999999999999
Q ss_pred ee-EEEEeeccCC
Q 022425 178 RS-YVRVREYDSR 189 (297)
Q Consensus 178 ~~-~i~v~~~~~~ 189 (297)
. .|.|..+...
T Consensus 89 -~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 -QHTFRVNLFTDF 100 (105)
T ss_dssp -TCEEEEECSCCC
T ss_pred -CceEEEEEcchH
Confidence 6 7777776543
No 337
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=2e-13 Score=100.96 Aligned_cols=79 Identities=6% Similarity=0.130 Sum_probs=69.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCC----eeccc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS----EFRNA 175 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~----~~~g~ 175 (297)
.....+|||+|||..+++++|+++|.+||.|.. |.|+.+.. .|||||+|.+. +|.+|+..|||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 456789999999999999999999999999966 88888763 36999999999 999999999999 9999
Q ss_pred eeeeEEEEeeccCC
Q 022425 176 FSRSYVRVREYDSR 189 (297)
Q Consensus 176 ~~~~~i~v~~~~~~ 189 (297)
..|.|..+.+.
T Consensus 98 ---r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 ---KTINVEFAKGS 108 (131)
T ss_dssp ---CCCCCEECCCS
T ss_pred ---EEEEEEECCCC
Confidence 67777777654
No 338
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=5.1e-14 Score=99.02 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
......++|||+|||..+++++|+++|.+|| |..+.+..+. ..|||||+|.+.++|..|+ .|||..+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---- 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC----
Confidence 3456778999999999999999999999999 9999998775 2469999999999999999 899999999
Q ss_pred eEEEEeeccCC
Q 022425 179 SYVRVREYDSR 189 (297)
Q Consensus 179 ~~i~v~~~~~~ 189 (297)
..|.|..+..+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 66677666543
No 339
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=4e-13 Score=95.92 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=67.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
....++|||+|||..+++++|.++|.+||.|..|.+..+.. .|||||+|.+.++|..|+..+ +..+.| ..|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEE
Confidence 45678999999999999999999999999999999998754 369999999999999999976 588888 788
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+..+
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 88887655
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=4.7e-13 Score=91.50 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhc----C-------CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
....+|||+|||..+++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|..|+ .|||..+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g- 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG- 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC-
Confidence 456799999999999999999999999 8 8998888766 569999999999999999 999999999
Q ss_pred eeeeEEEEe
Q 022425 176 FSRSYVRVR 184 (297)
Q Consensus 176 ~~~~~i~v~ 184 (297)
..|.|+
T Consensus 80 ---~~l~V~ 85 (87)
T 2hzc_A 80 ---QSLKIR 85 (87)
T ss_dssp ---EECEEE
T ss_pred ---eEEEEe
Confidence 556554
No 341
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=1.2e-13 Score=91.61 Aligned_cols=70 Identities=21% Similarity=0.319 Sum_probs=62.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|++ |||..+.| ..|.|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g----~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN----KMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS----CCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC----EEEEEEe
Confidence 489999999999999999999999999999987754 3699999999999999998 99999999 5555543
No 342
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5e-13 Score=95.49 Aligned_cols=80 Identities=18% Similarity=0.261 Sum_probs=69.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEE-ecC----CCcEEEEEEcCHHHHHHHHHHhc--CCeeccceee
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDR----GGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSR 178 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~----~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~ 178 (297)
...++|||+|||..+++++|.++|.+||. |..+.++ .+. ..+||||+|.+.++|..|+..|| +..+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---- 81 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---- 81 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----
Confidence 45689999999999999999999999998 9999888 443 34699999999999999999996 589999
Q ss_pred eEEEEeeccCCC
Q 022425 179 SYVRVREYDSRR 190 (297)
Q Consensus 179 ~~i~v~~~~~~~ 190 (297)
..|.|..+....
T Consensus 82 ~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 HQIAVDWAEPEI 93 (109)
T ss_dssp BCCEEEESCSSC
T ss_pred CeEEEEEcCCCC
Confidence 778888876653
No 343
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=98.07 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
......+|||+|||..+++++|+++|.+||.| ..|.|+.+.. .+||||+|.+.++|++|+.. |+..|.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----RE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eE
Confidence 34567899999999999999999999999999 7888887663 46999999999999999997 9999999 77
Q ss_pred EEEeeccC
Q 022425 181 VRVREYDS 188 (297)
Q Consensus 181 i~v~~~~~ 188 (297)
|.|..+..
T Consensus 86 i~v~~a~~ 93 (114)
T 2cpy_A 86 AFVHVVTL 93 (114)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 77776644
No 344
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=5.1e-13 Score=103.74 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeE
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (297)
......++|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.|||..+.| ..
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G----r~ 158 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 158 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----SB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----EE
Confidence 3456678999999999999999999999999999999988653 3699999999999999999999999999 55
Q ss_pred EEEeecc
Q 022425 181 VRVREYD 187 (297)
Q Consensus 181 i~v~~~~ 187 (297)
|.|..+.
T Consensus 159 l~V~~a~ 165 (177)
T 2f3j_A 159 MDIQLVA 165 (177)
T ss_dssp CEEEEES
T ss_pred EEEEEec
Confidence 6666554
No 345
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=2.3e-13 Score=93.30 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeecc
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~ 187 (297)
...+|||+|||..+++++|+++|.+| .|..+.+. ...+||||+|.+.++|+.|++.|||..+.| ..|.|+.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcC
Confidence 45789999999999999999999999 99998885 556799999999999999999999999999 788887764
Q ss_pred C
Q 022425 188 S 188 (297)
Q Consensus 188 ~ 188 (297)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 346
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=92.10 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=63.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+..++ ..+.| ..|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g----~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS----KTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS----CCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC----EEEEEEe
Confidence 4799999999999999999999999999999988754 4699999999999999999999 99999 5555543
No 347
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.8e-13 Score=94.60 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcC-hHHHHHHHHhcC--CcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~~i~v~~ 79 (297)
.+.+.|||+||+.. ++.++|+++|++||+|..|+|..+ ..+|||.|.+ +++|..|+..|| +..|.|..+++++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 56789999999999 999999999999999999999764 3379999999 899999999995 7889999999988
Q ss_pred cc
Q 022425 80 AH 81 (297)
Q Consensus 80 ~~ 81 (297)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 348
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=90.02 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEe
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~ 184 (297)
...+.++|||+|||+.+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|+ .|++..+.+. ...|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~--g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK--GISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET--TEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC--CEEEEEE
Confidence 3567789999999999999999999999999999999876 5679999999999987 3677765521 1677777
Q ss_pred eccCC
Q 022425 185 EYDSR 189 (297)
Q Consensus 185 ~~~~~ 189 (297)
.+.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 76554
No 349
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.42 E-value=4.2e-13 Score=108.63 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=67.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
..++|||+||+..+++++|+++|.+|| .|..|.|+.+..+ +||||+|.+.++|++||+.||+..|.| ..|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G----r~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----BCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC----EEe
Confidence 567899999999999999999999999 9999999988643 599999999999999999999999999 667
Q ss_pred EEeecc
Q 022425 182 RVREYD 187 (297)
Q Consensus 182 ~v~~~~ 187 (297)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777653
No 350
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=7.5e-13 Score=93.17 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE----ecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVF----RDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (297)
.....+|||+|||..+++++|+++|.+||.|.. .++ .....+||||+|.+.++|++|++ |||..+.| ..|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEE
Confidence 346789999999999999999999999998766 222 23445799999999999999999 99999999 778
Q ss_pred EEeeccCC
Q 022425 182 RVREYDSR 189 (297)
Q Consensus 182 ~v~~~~~~ 189 (297)
.|..+..+
T Consensus 88 ~V~~a~~~ 95 (101)
T 1fj7_A 88 KLEKPKGR 95 (101)
T ss_dssp EEECCSCC
T ss_pred EEEEcCCC
Confidence 88887655
No 351
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.42 E-value=9.6e-14 Score=95.62 Aligned_cols=74 Identities=27% Similarity=0.351 Sum_probs=65.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
++|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.+ |..|+..|||..+.| ..|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g----~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG----RTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS----SSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC----eEEEEEE
Confidence 4799999999999999999999999999999987754 469999999999 999999999999999 5666666
Q ss_pred ccC
Q 022425 186 YDS 188 (297)
Q Consensus 186 ~~~ 188 (297)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 544
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=1e-12 Score=98.62 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=68.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEE-ecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
..+.++|||+|||..+++++|.++|.+||.|.. +.+. .....+||||+|.+.++|..|+..|||..+.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 345679999999999999999999999998865 3333 33455799999999999999999999999999
Q ss_pred eeeEEEEeeccCC
Q 022425 177 SRSYVRVREYDSR 189 (297)
Q Consensus 177 ~~~~i~v~~~~~~ 189 (297)
..|.|..++..
T Consensus 120 --~~l~V~~a~~~ 130 (143)
T 3egn_A 120 --KPMVVQFARSA 130 (143)
T ss_dssp --EECEEEECCCS
T ss_pred --cEEEEEECCCC
Confidence 78888888655
No 353
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.8e-13 Score=99.11 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=65.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe-cCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFR-DRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
.+....++|||+|||+.+++++|.++|.+||.|..+.++. ... .|||||+|.+.++|++||. |||..|+| .
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g----r 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN----R 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC----c
Confidence 3455678999999999999999999999999998744433 322 3699999999999999999 99999999 5
Q ss_pred EEEEeecc
Q 022425 180 YVRVREYD 187 (297)
Q Consensus 180 ~i~v~~~~ 187 (297)
.|.|..+.
T Consensus 95 ~i~V~~a~ 102 (124)
T 1wel_A 95 FIQVHPIT 102 (124)
T ss_dssp CBEEEEEC
T ss_pred EEEEEECC
Confidence 66666543
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=1e-12 Score=95.52 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=67.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEee
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~ 185 (297)
....++|||+|| .+++++|+++|.+||.|..|.+. ...+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 456789999996 69999999999999999999886 455799999999999999999999999999 7778887
Q ss_pred ccCC
Q 022425 186 YDSR 189 (297)
Q Consensus 186 ~~~~ 189 (297)
+...
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7655
No 355
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=96.87 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.....++|||+|||+.+++++|+++|..||. |..|.+..+.. .|||||+|.+.++|++|+. +|+..++|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---- 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---- 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS----
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC----
Confidence 3567789999999999999999999999988 88899987755 3699999999999999999 99999999
Q ss_pred eEEEEeecc
Q 022425 179 SYVRVREYD 187 (297)
Q Consensus 179 ~~i~v~~~~ 187 (297)
+.|.|..+.
T Consensus 82 r~i~V~~a~ 90 (107)
T 2lmi_A 82 RYVEVYEIN 90 (107)
T ss_dssp SCCCCEECC
T ss_pred eEEEEEECC
Confidence 556665543
No 356
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=8.6e-13 Score=96.04 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
.......+|||+|||+.+++++|+++|.+| .|. .|.|+.+.. .|||||+|.+.++|++|++ +++..|+|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g---- 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH---- 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC----
Confidence 344567899999999999999999999999 677 788887654 4699999999999999998 57799999
Q ss_pred eEEEEeec
Q 022425 179 SYVRVREY 186 (297)
Q Consensus 179 ~~i~v~~~ 186 (297)
+.|.|..+
T Consensus 111 R~I~V~~a 118 (126)
T 2hgm_A 111 RYIEVFKS 118 (126)
T ss_dssp BCCCCEEE
T ss_pred EEEEEEEC
Confidence 55555443
No 357
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8.1e-13 Score=95.95 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
....+|||+|||+.+++++|+++|.+||.| ..|.|+.+..+ |||||+|.+.++|++|++. |+..+.| +
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g----R 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK----R 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS----C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC----e
Confidence 456899999999999999999999999975 57888876543 6999999999999999996 9999988 5
Q ss_pred EEEEeec
Q 022425 180 YVRVREY 186 (297)
Q Consensus 180 ~i~v~~~ 186 (297)
+|.|..+
T Consensus 96 ~i~V~~a 102 (123)
T 2dha_A 96 YIELFRS 102 (123)
T ss_dssp EECCEEE
T ss_pred EEEEEEC
Confidence 6666544
No 358
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=86.58 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEE
Q 022425 4 RSSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (297)
Q Consensus 4 ~~~~~l~V~nL~----~~~t~----~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 75 (297)
.|.-||+|.-++ .++-+ .+|.+.|.+||+|..++|.. +.+||+|.+.++|.+|+. |||..|.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----DKMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----SSEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----CCEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 356788888776 34544 67899999999999999984 449999999999999999 99999999999
Q ss_pred EEEEccCC
Q 022425 76 RVELAHGG 83 (297)
Q Consensus 76 ~v~~~~~~ 83 (297)
+|.++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998743
No 359
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.37 E-value=4.4e-13 Score=88.90 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=58.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeeccc
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (297)
+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|+. +++..+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE
Confidence 589999999999999999999999999999987654 4699999999999999999 488999993
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.35 E-value=2e-12 Score=91.13 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
....++|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+. ++..+.| ..|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g----~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG----KKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT----EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC----EEEE
Confidence 345679999999999999999999999999999999987632 599999999999999999 8888888 5555
Q ss_pred Eeecc
Q 022425 183 VREYD 187 (297)
Q Consensus 183 v~~~~ 187 (297)
|..+.
T Consensus 80 v~~a~ 84 (102)
T 2xs2_A 80 LGPAI 84 (102)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 55443
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-11 Score=88.24 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCCCCCCC-----------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 105 SRRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 105 ~~~~~~~l~V~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
.+.+..+|+|.||..... +++|+++|.+||.|..+.|......|||||+|.+.++|+.|+..|||..++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345678999999954432 579999999999999997754445689999999999999999999999999
Q ss_pred cceeeeEEEEeeccCC
Q 022425 174 NAFSRSYVRVREYDSR 189 (297)
Q Consensus 174 g~~~~~~i~v~~~~~~ 189 (297)
| ..|.|..+.+.
T Consensus 91 g----r~l~v~~a~~~ 102 (112)
T 2dit_A 91 G----RQITAQAWDGT 102 (112)
T ss_dssp T----EECEEEECCSC
T ss_pred C----cEEEEEEeCCC
Confidence 9 78888887654
No 362
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=7.5e-14 Score=100.99 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCC----CcEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
.+..+|||+|||..+++++|+++|.+||.|.. +.++.+.. .+||||+|.+.++|+.|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999999998 77877643 4699999999999999999999999999
Q ss_pred ceeeeEEEEeeccCCC
Q 022425 175 AFSRSYVRVREYDSRR 190 (297)
Q Consensus 175 ~~~~~~i~v~~~~~~~ 190 (297)
..|.|..+....
T Consensus 85 ----~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 ----NPIKVSFATRRA 96 (116)
Confidence 788888876653
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.2e-12 Score=89.64 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=61.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee--ccceeeeEEEEee
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 185 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~--~g~~~~~~i~v~~ 185 (297)
...+|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|++ +++..+ .| ..|.|..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC----EEEEEEe
Confidence 4579999999999999999999999999999999876 55799999999999974 455544 45 6777777
Q ss_pred ccCCC
Q 022425 186 YDSRR 190 (297)
Q Consensus 186 ~~~~~ 190 (297)
+.+..
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76553
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=1.5e-11 Score=86.82 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 107 RSDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 107 ~~~~~l~V~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
.+..+|+|.||.. ...+++|+++|++||.|..+.|+.++ ..|+|||+|.+.++|.+|+..|||..++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-- 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-- 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC--
Confidence 4567899999963 23689999999999999999999864 24799999999999999999999999999
Q ss_pred eeeEEEEeecc
Q 022425 177 SRSYVRVREYD 187 (297)
Q Consensus 177 ~~~~i~v~~~~ 187 (297)
+.|.+..+.
T Consensus 84 --r~i~v~~a~ 92 (105)
T 2pe8_A 84 --RVVKACFYN 92 (105)
T ss_dssp --EECEEEECC
T ss_pred --cEEEEEEcC
Confidence 777777654
No 365
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=3.7e-11 Score=94.58 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=83.6
Q ss_pred ChHHHHHHHHhc--CCcccCCcEEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHH
Q 022425 54 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 131 (297)
Q Consensus 54 ~~~~A~~A~~~l--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~ 131 (297)
+.+.+..|+... ....+.+..+.|............ ..........+|||+|||..+++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~-----------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVT-----------DEYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCC-----------HHHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccc-----------hhhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 667788888766 555555554555443211100000 0000112357899999999999999999999
Q ss_pred hcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccC
Q 022425 132 RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (297)
Q Consensus 132 ~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~ 188 (297)
+||.|..|.+..+.. .|||||+|.+.++|..|+..++ ..+.| ..|.|.....
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G----r~l~V~~~~~ 186 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE----TDLLILFKDD 186 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT----EECEEEETTT
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC----EEEEEEEhHH
Confidence 999999999998654 3699999999999999998665 58999 6777765543
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.30 E-value=8.2e-12 Score=89.31 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=64.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEcC----HHH----HHHHHH--HhcCCe
Q 022425 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTS----YDD----MKYAIR--KLDRSE 171 (297)
Q Consensus 110 ~~l~V~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~----~~fv~f~~----~~~----a~~a~~--~l~g~~ 171 (297)
..|||+|| ++.+++.+|+++|..||+|..+.++.|+.+| ||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999874 99999995 323 788888 789999
Q ss_pred eccceeeeEEEEeecc
Q 022425 172 FRNAFSRSYVRVREYD 187 (297)
Q Consensus 172 ~~g~~~~~~i~v~~~~ 187 (297)
|+| +.|+|...+
T Consensus 83 I~G----r~irV~ln~ 94 (136)
T 2j8a_A 83 IMG----FKFEVILNK 94 (136)
T ss_dssp ETT----EEEEEEECC
T ss_pred ecC----cEEEEEECc
Confidence 999 777777554
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=9.9e-12 Score=100.21 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee----
Q 022425 106 RRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF---- 172 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~---- 172 (297)
.....+|||+||+..+ ++++|.++|.+||.|..|.|+.. .+||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 5567899999999998 69999999999999999999865 56999999999999999999999999
Q ss_pred --------ccceeeeEEEEeeccCC
Q 022425 173 --------RNAFSRSYVRVREYDSR 189 (297)
Q Consensus 173 --------~g~~~~~~i~v~~~~~~ 189 (297)
.| ..|.|.++...
T Consensus 209 ~~e~~~~~~g----r~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREG----TGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGS----CCCEEEECC--
T ss_pred cccccccCCC----CEEEEEEccCC
Confidence 66 67777777544
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.4e-12 Score=89.50 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-------CCcEEEEEEcCHHHHHHHHHHhc
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-------GGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
...++|||+|||..+++++|+++|.+||.|. +.++.+. ..+||||+|.+.++|++|++.|+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 4567999999999999999999999999999 7666543 34699999999999999999983
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=1e-10 Score=83.56 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=63.1
Q ss_pred CCCceEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 107 RSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
.+...|.+.|+-... .+++|++.|++||.|..+.+..+...|++||+|.+.++|.+|+..|||..++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-- 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-- 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT--
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 445678888874432 24578999999999999999888777899999999999999999999999999
Q ss_pred eeeEEEEeec
Q 022425 177 SRSYVRVREY 186 (297)
Q Consensus 177 ~~~~i~v~~~ 186 (297)
+.|.+...
T Consensus 83 --R~i~v~~~ 90 (114)
T 3s6e_A 83 --KMITAAYV 90 (114)
T ss_dssp --EECEEEEE
T ss_pred --EEEEEEEE
Confidence 66666654
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=7.8e-11 Score=83.09 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=61.9
Q ss_pred CCceEEEeCCCC--CCC--------HHHHHHHHHhcCCeeEEEEEecCC------CcEEEEEEcCHHHHHHHHHHhcCCe
Q 022425 108 SDYRVLVTGLPS--SAS--------WQDLKDHMRRAGDVCFSQVFRDRG------GMTGIVDYTSYDDMKYAIRKLDRSE 171 (297)
Q Consensus 108 ~~~~l~V~~l~~--~~~--------~~~l~~~f~~~g~i~~~~~~~~~~------~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (297)
+...|.|.|+-. .+. .++|++.|++||.|..+.|+.+.. .|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 456788888733 232 468999999999999999987743 4799999999999999999999999
Q ss_pred eccceeeeEEEEeec
Q 022425 172 FRNAFSRSYVRVREY 186 (297)
Q Consensus 172 ~~g~~~~~~i~v~~~ 186 (297)
++| +.|.+...
T Consensus 84 f~G----R~i~v~~~ 94 (105)
T 3v4m_A 84 FAN----RVVVTKYC 94 (105)
T ss_dssp ETT----EECEEEEE
T ss_pred eCC----CEEEEEEe
Confidence 999 66666654
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=1.1e-10 Score=83.91 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=62.6
Q ss_pred CCceEEEeCCCCC--C---CHHHHHHHHHhcCCeeEEEEEecCCC--------cEEEEEEcCHHHHHHHHHHhcCCeecc
Q 022425 108 SDYRVLVTGLPSS--A---SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (297)
Q Consensus 108 ~~~~l~V~~l~~~--~---~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (297)
+..+|+|.|+-.. + .+++|++.|.+||.|..+.|+.+..+ |++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4568889998432 2 36899999999999999999987542 699999999999999999999999999
Q ss_pred ceeeeEEEEeec
Q 022425 175 AFSRSYVRVREY 186 (297)
Q Consensus 175 ~~~~~~i~v~~~ 186 (297)
+.|.+...
T Consensus 99 ----R~i~v~~~ 106 (118)
T 3ue2_A 99 ----RKVVAEVY 106 (118)
T ss_dssp ----EECEEEEE
T ss_pred ----cEEEEEEc
Confidence 66666654
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.1e-11 Score=81.10 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE
Q 022425 4 RSSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (297)
Q Consensus 4 ~~~~~l~V~nL~~~-----~t~----~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (297)
.|.-||+|.-++.. +-+ .+|.+.|.+||+|..++|..+ -+||+|.+.++|.+||+ |||..|.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 46678999888643 333 568999999999999999854 39999999999999999 9999999999
Q ss_pred EEEEEcc
Q 022425 75 LRVELAH 81 (297)
Q Consensus 75 i~v~~~~ 81 (297)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999854
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=1.1e-10 Score=99.18 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeec
Q 022425 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (297)
Q Consensus 106 ~~~~~~l~V~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (297)
..+..+|||+| |+..+++++|+++|.+||+|..+.+.. ..+||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 45677999999 578999999999999999999877754 5679999999999999999999999984
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=5.9e-11 Score=83.61 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=54.7
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCeeEEEEEecCC---CcEEEEEEcCHHHHHHHHHHhcCCeeccceee
Q 022425 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (297)
Q Consensus 114 V~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (297)
+.||+..+++++|++.| ++||.|..+.+..+.. .|||||+|.+.++|.+|+..|||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC----
Confidence 44566666666666555 9999999999998753 4799999999999999999999999999
Q ss_pred eEEEEee
Q 022425 179 SYVRVRE 185 (297)
Q Consensus 179 ~~i~v~~ 185 (297)
+.|.|..
T Consensus 96 r~i~v~~ 102 (104)
T 1jmt_A 96 QPIHAEL 102 (104)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 5555554
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.2e-09 Score=74.68 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeeccCC
Q 022425 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (297)
Q Consensus 119 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~~~~ 189 (297)
..+++++|+++|.+||.|..|.|+. ...|||||+|.+.++|+.|+..+++ +.| ..|.|.++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 5689999999999999999999884 4567999999999999999998655 455 66777776554
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=3.4e-10 Score=91.27 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHHHhcCCCeeEEEEec-------CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 022425 6 SRTLYVGNLP-----GDTRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (297)
Q Consensus 6 ~~~l~V~nL~-----~~~t~~~l~~~F~~~G~V~~~~~~~-------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (297)
+..+.+.|+- ..-.+++|.+.|++||+|..|.|.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555552 2346788999999999999999953 236789999999999999999999999999999
Q ss_pred EEEEEEcc
Q 022425 74 RLRVELAH 81 (297)
Q Consensus 74 ~i~v~~~~ 81 (297)
.|.|.++.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=8.1e-10 Score=78.96 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcC-HHHHHHHHHHhc--CCeeccce
Q 022425 104 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNAF 176 (297)
Q Consensus 104 ~~~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--g~~~~g~~ 176 (297)
.....++.|+|+||+.. ++.++|+++|.+||.|.+|.+..+.. .|||.|.+ ..+|..|+..|| +..|.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 34677899999999999 99999999999999999999988876 69999999 899999999994 67778843
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.1e-08 Score=70.08 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcC-----CCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~-----G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
..++|-|-|||-.|++..|++|++.+ |.|..|.|..+ -+-|+|+|.+...|.+|.-.|||..|.|++|.|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 36899999999999999999999999 99999999765 56799999999999999988999999999999876
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=6.2e-09 Score=69.64 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=59.0
Q ss_pred CCceEEEeCCC----CCCC----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeee
Q 022425 108 SDYRVLVTGLP----SSAS----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (297)
Q Consensus 108 ~~~~l~V~~l~----~~~~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (297)
++.+|+|.-++ ..+- ..+|.+.|.+||.|..+.+..+. +||+|.+.+.|.+|+. |||..++| +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~G----r 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLN----R 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETT----E
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCC----e
Confidence 44566666554 2232 36799999999999999999984 9999999999999999 99999999 7
Q ss_pred EEEEeeccCC
Q 022425 180 YVRVREYDSR 189 (297)
Q Consensus 180 ~i~v~~~~~~ 189 (297)
.|+|..+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 7888776554
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=2.7e-08 Score=66.87 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCceEEEeCCCCC-----CC----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 107 RSDYRVLVTGLPSS-----AS----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 107 ~~~~~l~V~~l~~~-----~~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
++..+|+|.-++.. +- ..+|.+.|.+||+|..+.+..+ -+||+|.+.+.|.+|++ |||.+++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G--- 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG--- 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT---
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC---
Confidence 45668888877632 22 2568999999999999999998 49999999999999999 99999999
Q ss_pred eeEEEEeec
Q 022425 178 RSYVRVREY 186 (297)
Q Consensus 178 ~~~i~v~~~ 186 (297)
+.|+|...
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 77777654
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.8e-07 Score=62.67 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhc-----CCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYK-----YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~-----~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 78 (297)
...++|.|.|||+.+.++.|.-+|+. =|+|..+... .+-|+|+|.+.+.|+..|+ -....|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45689999999999999999999987 2699999887 3789999999999999998 44678889999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCC
Q 022425 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSAS 122 (297)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~l~~~~~ 122 (297)
...+ ...+.|++.+|++.++
T Consensus 80 P~~~------------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAPP------------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp ECCC------------------------CCCCCCCCCSCCCCCC
T ss_pred cCCC------------------------CCcceEeeecCCCCCC
Confidence 7542 2335677778877654
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=2.4e-07 Score=63.32 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCC-C----HHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 5 SSRTLYVGNLPGDT-R----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 5 ~~~~l~V~nL~~~~-t----~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
-.++|+|+||+..| + .+.++++|..|+++..+.+.+. =.-..|.|.++++|.+|-..|++..|.|+.|+|.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 45789999998754 3 2567999999999999888743 34679999999999999999999999999999999
Q ss_pred ccCC
Q 022425 80 AHGG 83 (297)
Q Consensus 80 ~~~~ 83 (297)
+++.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9843
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=8.1e-07 Score=71.34 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCC--------cEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEEeec
Q 022425 122 SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (297)
Q Consensus 122 ~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v~~~ 186 (297)
.+++|.+.|.+||.|..+.|..+..+ |++||+|.+.++|.+|+..|||..++| +.|.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g----r~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG----RKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC----eEEEEEEc
Confidence 46789999999999999999865432 699999999999999999999999999 55655543
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.7e-06 Score=57.12 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhc-----CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEE
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (297)
...+|-+-|||..++...|..+..++ |.+..+.+..+.. =|+|+|.+...|-+|.-.|+|.+|.| +.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEE
Confidence 35688999999999999999999999 9999999988876 49999999999999999999999999 6666
Q ss_pred Ee
Q 022425 183 VR 184 (297)
Q Consensus 183 v~ 184 (297)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.25 E-value=8.7e-06 Score=54.77 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=55.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCC-----CCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP-----RPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
++|.|.+||+.+|++++.+.++.+.++....+.... ..-.-|||.|.+.+++....+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999888777774311 22467999999999999999999998774
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.20 E-value=9.2e-06 Score=57.16 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=61.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-cEEEEEEcc
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 81 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~~~~ 81 (297)
..+-|.|.++|+. ....|...|++||.|...... ...++..|.|.+..+|++||. .||..|.| ..|-|....
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 4678999999987 478889999999999998873 237899999999999999999 89999985 667777754
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.99 E-value=2e-05 Score=52.95 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
...++| ++|+.+...||.++|+.||.|.--+|- -.-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 355666 999999999999999999955444443 3479999999999999999663
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.87 E-value=2.2e-05 Score=52.83 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=43.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
..++| ++|+.+...||.++|+.||.|. |..+. -.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 34566 9999999999999999999333 22232 3479999999999999999764
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.76 E-value=8.5e-05 Score=50.18 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEec---CC--CCCcEEEEEEcChHHHHHHHHhcCCcccCCc-----E
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-----R 74 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~---~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-----~ 74 (297)
.+-+|.|..||+.+||+++.+.++.+=++....+.. +. ..-.-|||.|.+.+++....+.++|..|-+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 456899999999999999888887665544333322 11 1235699999999999999999999777432 4
Q ss_pred EEEEEcc
Q 022425 75 LRVELAH 81 (297)
Q Consensus 75 i~v~~~~ 81 (297)
-.|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4455553
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.75 E-value=3.6e-05 Score=54.86 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=57.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEE-EEec---------------CC-CCCcEEEEEEcChHHHHHHHHhcC
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGRD 66 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~-~~~~---------------~~-~~~g~afV~f~~~~~A~~A~~~l~ 66 (297)
....-|.|-+.|+. ....|.+.|++||.|.+- .+.. .. ...++..|.|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 35677888899765 567788999999999872 2211 00 135788999999999999999 99
Q ss_pred CcccCCcEEEEEEcc
Q 022425 67 GYNFDGYRLRVELAH 81 (297)
Q Consensus 67 g~~~~g~~i~v~~~~ 81 (297)
|..|.|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888865
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.0011 Score=46.67 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=55.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccce
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (297)
......|.|-++|+.. ...|...|.+||.|+..... .+..+..|.|.+..+|++||. .||..++|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 4456789999998885 67788999999999988763 334499999999999999999 6999998743
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.0011 Score=44.53 Aligned_cols=68 Identities=13% Similarity=0.322 Sum_probs=56.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC------cEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
++|.|.+||+.++++++.+++.....+........... .-|+|.|.+.+++....+.++|..+-+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 47999999999999999999999888776666554321 279999999999999999999998876433
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.0011 Score=44.48 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=45.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
......++| ++|..+...+|.++|..||.|.--.| .+. .|||.|.+.+.|..|+..++
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-dDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-ETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE-cCC---eEEEEecCHHHHHHHHHhcc
Confidence 334456666 99999999999999999995543333 333 79999999999999999774
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00075 Score=46.09 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCeeccceeeeEEEE
Q 022425 109 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (297)
Q Consensus 109 ~~~l~V~~l~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~v 183 (297)
.++|+|+||+..+ . ...++++|..|+++......+.-. -..|.|.+.++|.+|...||+..+.| ..+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g----~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG----KEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT----EECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC----ceeEE
Confidence 4689999998765 2 367899999999888866665533 57899999999999999999999999 45566
Q ss_pred eecc
Q 022425 184 REYD 187 (297)
Q Consensus 184 ~~~~ 187 (297)
-...
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5554
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.16 E-value=0.00024 Score=62.42 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
..++|||. .|..+++.+|.++|++||+|.++.+-++. .-||.|||.+.++|..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789997 79999999999999999999999997542 4799999999999998876
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.0022 Score=43.57 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhc-----CCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHH
Q 022425 107 RSDYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 107 ~~~~~l~V~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 166 (297)
....+|.|.|||+.+.++.|+-.|+.- |.|..+.... .-|+|+|.+.+.|+..++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 345689999999999999999999872 5787777765 3799999999999998884
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.86 E-value=0.0026 Score=42.86 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhc
Q 022425 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (297)
.++| ++|..+...+|.++|..||.|. |..+.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 9999999999999999999433 3333333 79999999999999999875
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.12 E-value=0.01 Score=40.00 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=51.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC------cEEEEEEcCHHHHHHHHHHhcCCeecccee
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (297)
..+|.|..||+.++++++.+++...-++........... .-|+|.|.+.++.....+.++|..+-+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 458999999999999999988887655433222221111 268999999999999999999998876443
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.70 E-value=0.018 Score=40.99 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=48.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEe--------------cC---CCcEEEEEEcCHHHHHHHHHHhcC
Q 022425 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFR--------------DR---GGMTGIVDYTSYDDMKYAIRKLDR 169 (297)
Q Consensus 108 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~--------------~~---~~~~~fv~f~~~~~a~~a~~~l~g 169 (297)
....|.|-+.|+... ..+.+.|++||.|+. ..+.. -+ +..+..|.|.+..+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 345788888866554 456788999999876 21111 01 23488999999999999999 899
Q ss_pred Ceeccce
Q 022425 170 SEFRNAF 176 (297)
Q Consensus 170 ~~~~g~~ 176 (297)
..|+|..
T Consensus 84 ~ii~G~m 90 (132)
T 3p3d_A 84 AVFNGVL 90 (132)
T ss_dssp CEETTEE
T ss_pred eEeCcEE
Confidence 9999943
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.34 E-value=0.085 Score=47.28 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
..++|+ +|+.|...+|.++|+.||.| .|..+. ...|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHHh
Confidence 466776 99999999999999999954 333332 45799999999999999998753
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.23 E-value=0.027 Score=49.61 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=41.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHH
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 165 (297)
...|+|. .+..+++.+|.+.|.+||.|..+.+..+. +.||.|+|.+.+.+..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 3578897 68889999999999999999999888754 3599999999988876654
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=93.32 E-value=0.32 Score=31.04 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=45.7
Q ss_pred eEEEcCC-CCCCCHHHHHHHHhcCC-----CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEcc
Q 022425 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (297)
Q Consensus 8 ~l~V~nL-~~~~t~~~l~~~F~~~G-----~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~ 81 (297)
+|||..- -..+++.+|..++..-+ .|-.|.+. -.|.||+..... |..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 5677433 34588889888887655 45567766 568999987654 677888899999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=90.27 E-value=2.6 Score=27.45 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
+.+|-|-|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++...|+..|-+. ....|.+++
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 567888899999999999988888888877788887 678999999999999999766332 345666666
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.36 E-value=2.5 Score=37.79 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=43.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcC
Q 022425 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (297)
Q Consensus 109 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 169 (297)
...++|+ ++..+...+|.+.|..||.+ .|....+. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 4466665 99999999999999999954 33333332 799999999999999998854
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=78.83 E-value=3.2 Score=31.00 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=39.3
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hcCCCeeEEEEecCCCCCcEEEEEEcChHHH-HHHHH
Q 022425 8 TLYVGNLPGD---------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA-EDAIR 63 (297)
Q Consensus 8 ~l~V~nL~~~---------~t~~~l~~~F--~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A-~~A~~ 63 (297)
+++|-|+|.. ....+|.+.| ..|.++.-..+.......|+|.|+|...-.. ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4678888862 4557899977 9999887666654445588999999855433 33544
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.96 E-value=17 Score=23.70 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
.|+-.....++..+|++.++. || +|..|..+.......-|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344456778999999988885 55 66666665544445669999999888877544
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=69.74 E-value=20 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=48.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHh
Q 022425 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (297)
Q Consensus 106 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 167 (297)
...++-|.|-|+|..+-..++.-...-.|.--.|+.+.. .|.|.|.+.++...|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 345678999999999998888888888887777776654 6899999999999999887
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=67.18 E-value=19 Score=23.41 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
-|+-..+..+|..+|++.++. || +|..|..........-|||.+...++|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 345556789999999988875 55 66666665544445569999998888665543
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=59.88 E-value=34 Score=22.43 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=26.4
Q ss_pred CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 022425 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (297)
Q Consensus 32 ~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 67 (297)
+|..+.++. ...||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCC
Confidence 355555542 3699999999999999999887776
No 410
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.52 E-value=1.5 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcC
Q 022425 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (297)
Q Consensus 21 ~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~ 54 (297)
+|+.++|...|.|+.+... +||+||...+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeCc
Confidence 4666778888888876554 8999999873
No 411
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=53.40 E-value=35 Score=24.73 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=37.6
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
|+--+...++..+|.+.++. || .|..|..+.......-|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 34445678899999888875 45 66666665543345569999998888776543
No 412
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=53.30 E-value=11 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=33.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
..++|+|||++++..-|..++.. +.+..+.+ +-..|-|++.+. -.|.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l-------------m~QkEva~Rl~A-~pg~ 157 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF-------------LVQKEVAERMTA-RPKT 157 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE-------------EEEHHHHHHHTC-CTTS
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE-------------Eeeeeeeeeccc-CCCC
Confidence 46789999999999999999987 55554433 334466666554 4443
No 413
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=52.87 E-value=39 Score=24.65 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
.|+-.+...+|..+|.+.++. || .|..|..+.......-|||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 344456678999999988875 55 66777665433335569999998887666554
No 414
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=52.26 E-value=59 Score=22.93 Aligned_cols=112 Identities=10% Similarity=0.148 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-EEEEEEccCCCCCCCCCCCCCCCC
Q 022425 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELAHGGRRHSSSMDRYSSYS 97 (297)
Q Consensus 20 ~~~l~~~F~~~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~~~~~~~~~~~~~~~~~~~ 97 (297)
..+|..+|...| .|..+.+..+.. .++.-+.+.+.+.|.++++.+ |..+... .+-|
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~~~-~~~~~~~~~d~~~a~~~L~~~-G~~v~~~svv~v-------------------- 77 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAENAD-FGILRGIVSDPDKAYKALKDN-HFAVNITDVVGI-------------------- 77 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECSS-CEEEEEEESCHHHHHHHHHHT-TCCEEEEEEEEE--------------------
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEeCCHHHHHHHHHHc-CCeEeeeeEEEE--------------------
Confidence 466777777776 666665543221 233223367788888887744 3322111 1111
Q ss_pred CCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEcCHHHHHHHHHHhcCCee
Q 022425 98 SGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (297)
Q Consensus 98 ~~~~~~~~~~~~~~l~V~~l~~~~-~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (297)
+++... ....+.+.+...| .|..+..........+.+.+++.+.|.+++.. .|..+
T Consensus 78 ------------------~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 78 ------------------SCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp ------------------EEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred ------------------EeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 222211 3445566666666 45454443222334566788888888888775 55544
No 415
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.84 E-value=7.2 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.1
Q ss_pred CCeeEEEEecCCCCCcEEEEEEcChH
Q 022425 31 GPIVDIDLKIPPRPPGYAFLEFEDYR 56 (297)
Q Consensus 31 G~V~~~~~~~~~~~~g~afV~f~~~~ 56 (297)
|.|+.|... +..|||.|++-.
T Consensus 28 GtV~kV~~~-----~~~ClV~FeD~s 48 (68)
T 2e5p_A 28 GTIKKVDSA-----REVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEETT-----TTEEEEEETTTE
T ss_pred eEEEEEecC-----CcEEEEEEccCC
Confidence 555555432 789999998753
No 416
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=50.68 E-value=41 Score=24.15 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=37.5
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
|+-.+...++..+|.+.++. || .|..|..+.......-|||.+....+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 44445678999999888875 45 66666665543345569999998888776543
No 417
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=49.19 E-value=6.3 Score=32.13 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~ 38 (297)
...++|+|||++++..-|..++.....+..+.+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 346789999999999999999986555554443
No 418
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=48.42 E-value=35 Score=24.79 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=37.6
Q ss_pred EEcCCCCCCCHHHHHHHHhc-CC-CeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
|+-.+...++..+|.+.++. || .|..|..+.......-|||.+....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34445668889999887775 45 66666665544445679999999888776544
No 419
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=45.61 E-value=58 Score=21.72 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCCC
Q 022425 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~~ 84 (297)
-++..+.-+||..-.. .||.-.++.... .-..|-..+.+|-.+||+.|+-. ..-+.|+|-+..+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n-----~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTN-----NELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECS-----SSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEec-----ceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 3556788888766554 789877777752 23678899999999999977653 344455665554443
No 420
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=44.17 E-value=11 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=9.9
Q ss_pred CCcEEEEEEcCh
Q 022425 44 PPGYAFLEFEDY 55 (297)
Q Consensus 44 ~~g~afV~f~~~ 55 (297)
..+.|+|.|.+-
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 379999999874
No 421
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.11 E-value=10 Score=23.80 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.0
Q ss_pred CCeeEEEEecCCCCCcEEEEEEcChH
Q 022425 31 GPIVDIDLKIPPRPPGYAFLEFEDYR 56 (297)
Q Consensus 31 G~V~~~~~~~~~~~~g~afV~f~~~~ 56 (297)
|.|..|... +..|||.|.+..
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTSC
T ss_pred EEEEEeccC-----CCEEEEEEcCCC
Confidence 555554433 778999998753
No 422
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.05 E-value=39 Score=22.88 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=27.0
Q ss_pred CeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 32 ~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
.|..+... ...+||.|||=..+.++..|+..+.+.
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45665554 345999999999999999998877654
No 423
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=39.82 E-value=19 Score=28.67 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=22.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVD 35 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~ 35 (297)
..+.|+|||++++...|..++.....+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 35889999999999999888875433333
No 424
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=39.57 E-value=17 Score=28.90 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~ 38 (297)
..+.|+|||++++..-|..++.....+..+.+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 45889999999999999999986544444433
No 425
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.77 E-value=8.4 Score=30.87 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCeeEEEE
Q 022425 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (297)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~V~~~~~ 38 (297)
...|+|||++++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987665555444
No 426
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.47 E-value=5.9 Score=23.78 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.2
Q ss_pred CCcEEEEEEcChH
Q 022425 44 PPGYAFLEFEDYR 56 (297)
Q Consensus 44 ~~g~afV~f~~~~ 56 (297)
.+..|||.|++-.
T Consensus 34 ~~~~ClV~FeD~s 46 (63)
T 2e5q_A 34 SKQSCLVTFEDNS 46 (63)
T ss_dssp TTSEEEEEETTSC
T ss_pred CCCEEEEEEccCc
Confidence 3788999998754
No 427
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=38.29 E-value=19 Score=23.87 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=16.2
Q ss_pred EcCCCCCCCHHHHHHHH-hcCCCe
Q 022425 11 VGNLPGDTRMREVEDLF-YKYGPI 33 (297)
Q Consensus 11 V~nL~~~~t~~~l~~~F-~~~G~V 33 (297)
|.+|.+.+|-.||...+ ...|+.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~~ 44 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGRT 44 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSCC
T ss_pred EECCCCCCcHHHHHHHHHhccCCC
Confidence 45788899999988855 444543
No 428
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=36.99 E-value=67 Score=19.18 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=39.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcCHHHHHHHHHH
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~ 166 (297)
.++.|.++.-......|+..+.. ..|..+.+... .+.+.|.|.+.++...++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~--~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN--EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc--CCEEEEEECCHHHHHHHHHH
Confidence 46889999888889999999999 88877766543 23577888755555666664
No 429
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=36.12 E-value=23 Score=29.92 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhc
Q 022425 7 RTLYVGNLPGDTRMREVEDLFYK 29 (297)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~ 29 (297)
..++|+|||++++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999999998875
No 430
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.58 E-value=55 Score=28.42 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=41.2
Q ss_pred eEEEcCCCCCC----CHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE
Q 022425 8 TLYVGNLPGDT----RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (297)
Q Consensus 8 ~l~V~nL~~~~----t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (297)
--+||||..-. -...+.++..+||+|..+++- +.-+|...+++.|+.++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 34789886432 135677888899999888773 345677889999999886 3444454443
No 431
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=35.37 E-value=33 Score=23.00 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.9
Q ss_pred CCHHHHHHHHhcCCCeeEEEEe
Q 022425 18 TRMREVEDLFYKYGPIVDIDLK 39 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~V~~~~~~ 39 (297)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999988775
No 432
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=35.21 E-value=44 Score=23.73 Aligned_cols=45 Identities=4% Similarity=0.032 Sum_probs=31.3
Q ss_pred EcCCCCCCCHHHHHHHHh-cCC--CeeEEEE-ec-----------C-CCCCcEEEEEEcCh
Q 022425 11 VGNLPGDTRMREVEDLFY-KYG--PIVDIDL-KI-----------P-PRPPGYAFLEFEDY 55 (297)
Q Consensus 11 V~nL~~~~t~~~l~~~F~-~~G--~V~~~~~-~~-----------~-~~~~g~afV~f~~~ 55 (297)
|-++..-++++++.++|. .++ +|..+.| +. + ....+|.||.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 666777799999999995 444 6777666 11 1 33467888888764
No 433
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=32.85 E-value=76 Score=23.90 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=31.6
Q ss_pred EEcCCCCCCCHHH--------HHHHHhcCCCeeEEEEecCCCCCcEEEEEEcCh
Q 022425 10 YVGNLPGDTRMRE--------VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (297)
Q Consensus 10 ~V~nL~~~~t~~~--------l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~ 55 (297)
|+--||..++.++ +.++|..+|-|.++-|..++.....|-|-|.+-
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 4557999999877 355667788888888875444445666666543
No 434
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=30.78 E-value=29 Score=16.05 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=10.8
Q ss_pred CCHHHHHHHHhcCC
Q 022425 18 TRMREVEDLFYKYG 31 (297)
Q Consensus 18 ~t~~~l~~~F~~~G 31 (297)
+...++..+|.++|
T Consensus 12 taikqvkklfkkwg 25 (26)
T 1ytr_A 12 TAIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 34567899999887
No 435
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=30.77 E-value=26 Score=20.73 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.5
Q ss_pred CcEEEEEEcChH
Q 022425 45 PGYAFLEFEDYR 56 (297)
Q Consensus 45 ~g~afV~f~~~~ 56 (297)
...|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 668999998754
No 436
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=30.41 E-value=40 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=40.0
Q ss_pred cCCCCCCCHHHHHHHH----hcCCCeeEEEEecC--CCCCcEEEEEEcChHHHHHHHHhc
Q 022425 12 GNLPGDTRMREVEDLF----YKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F----~~~G~V~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l 65 (297)
+..+.+.+--||..+| ..+|-|..+.|..- .....+++|.|.+.++|..|+..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3445556656788888 36889999998542 233567899999999999988755
No 437
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.38 E-value=1.1e+02 Score=19.73 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=38.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHH
Q 022425 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 166 (297)
.++-.+...++..+|++.+++ |+ .|..+.....+.+ .-|+|.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 344445678899999999887 55 6666776665544 3799999888777765544
No 438
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=30.15 E-value=38 Score=17.97 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHhcC
Q 022425 16 GDTRMREVEDLFYKY 30 (297)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (297)
.++|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999875
No 439
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=29.08 E-value=36 Score=29.35 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=35.1
Q ss_pred EEcCCCC---CCCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 022425 10 YVGNLPG---DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (297)
Q Consensus 10 ~V~nL~~---~~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (297)
+||||.. .-....+.++..+||+|..+.+- +.-+|...+++.++.++. -++..+.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~-~~~~~f~ 77 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV-THGEDTA 77 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT-TTGGGSC
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH-hCChhhc
Confidence 5677642 22345577888999999888773 223466678888888775 3334443
No 440
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.72 E-value=1.6e+02 Score=21.04 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=38.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHH
Q 022425 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 111 ~l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 166 (297)
..++-.+...++..+|++.+++ |+ .|..+.....+.+ .-|+|.+....+|.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 3445556778889999888876 55 6666776665544 2699999887777665443
No 441
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=28.66 E-value=1.7e+02 Score=21.18 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=38.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHHH
Q 022425 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 166 (297)
.++-.+...++.-+|++.+++ |+ .|..|.....+.+ .-|||.+....+|.+....
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 444456678888999888876 55 6666776665544 3699999887777665543
No 442
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=27.37 E-value=38 Score=21.61 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHHhcCC
Q 022425 12 GNLPGDTRMREVEDLFYKYG 31 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G 31 (297)
|.|+..+|+++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999998874
No 443
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=27.10 E-value=1.3e+02 Score=26.79 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=29.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhcC---CCeeEEEEecC-CCCCcEE-EEEEcChHHHHHHHHhc
Q 022425 6 SRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIP-PRPPGYA-FLEFEDYRDAEDAIRGR 65 (297)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~---G~V~~~~~~~~-~~~~g~a-fV~f~~~~~A~~A~~~l 65 (297)
.++|.|.-||+.++.+.|.+..... ++|..|.=..+ -...|.- .|++.....++..+..|
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L 339 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYL 339 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHH
Confidence 4689999999999999887755432 44433321111 1113333 35566555555555433
No 444
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.94 E-value=84 Score=20.98 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
-++..+.-++|.+-.. .||.-.++....+ --.|-..++++-.+|++.|+- ...-+.|+|-+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~IPL~~Q~DLDkAvelLDr-s~~mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILDR-SSSMKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS-----SCEEECCSHHHHHHHHHHHHH-CSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eEEEecccHHHHHHHHHHhcc-CccccceEEEE
Confidence 3566788888876665 7898888888632 246788999999999997654 23333444443
No 445
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.75 E-value=66 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=27.3
Q ss_pred eeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 33 V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
|..+... ..-+||.|||=..+.++..|++.+.+..
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 5554433 3469999999999999999999888753
No 446
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=24.27 E-value=1.5e+02 Score=19.51 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEE
Q 022425 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 79 (297)
-++..+.-++|..-.. .||.-.++.+... --.|-..+.++-.+||+.|+- ...-+.|+|-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLDr-s~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-----ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET-----TEEEECCCHHHHHHHHHHHHH-CSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEecccHHHHHHHHHHhcc-CccccceEEEE
Confidence 4566788888877665 7899888888632 357888999999999997654 22333444433
No 447
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=23.91 E-value=1.7e+02 Score=19.81 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.8
Q ss_pred CCcEEEEEEcChH-----HHHHHHHhcCC
Q 022425 44 PPGYAFLEFEDYR-----DAEDAIRGRDG 67 (297)
Q Consensus 44 ~~g~afV~f~~~~-----~A~~A~~~l~g 67 (297)
-.||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 5799999998877 77788887776
No 448
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=23.84 E-value=28 Score=21.81 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=22.8
Q ss_pred CcEEEEEEcChHHHHHHHHhcC-C----cccCCcEEEEEEccC
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRD-G----YNFDGYRLRVELAHG 82 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~-g----~~~~g~~i~v~~~~~ 82 (297)
+||+||+-.+-++.--=+..|. + ..-.|..+..+....
T Consensus 12 KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 12 KKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp TTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 8999999876443332223343 2 334577877777654
No 449
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=23.50 E-value=54 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHH--hcCCCeeEEEEecCCCC--CcEEEEEEcChHHHHHHHH
Q 022425 22 EVEDLF--YKYGPIVDIDLKIPPRP--PGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 22 ~l~~~F--~~~G~V~~~~~~~~~~~--~g~afV~f~~~~~A~~A~~ 63 (297)
+|..+| +.+|-|..+.|.....+ ...+++.|.+.++|..|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 345666 36899999999553333 3567899999888766443
No 450
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.02 E-value=1.6e+02 Score=19.09 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHh-cCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcEEEEEEccCC
Q 022425 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~~~~~ 83 (297)
-++..+.-++|..-.. .||.-.++.+..+ --.|-..+.++-.+|++.|+- ...-+.|+|-+..+.
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS-----SCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 3566788888876665 7899888888632 256888999999999997654 344556666665543
No 451
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=22.87 E-value=48 Score=16.53 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=11.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHH
Q 022425 5 SSRTLYVGNLPGDTRMREVEDLF 27 (297)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F 27 (297)
.-++||||+ |+++|+.+-
T Consensus 4 qvrtiwvgg-----tpeelkklk 21 (36)
T 2ki0_A 4 QVRTIWVGG-----TPEELKKLK 21 (36)
T ss_dssp SCCCCCBCC-----CHHHHHHHH
T ss_pred eeEEEEecC-----CHHHHHHHH
Confidence 457788886 456665554
No 452
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=22.79 E-value=47 Score=25.22 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 022425 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (297)
Q Consensus 18 ~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (297)
+.+++|.+...-|.+.. +..+.-+-.-||+|.++++....+..|.|..
T Consensus 65 ~~~~~I~~Ei~aYnpLi----P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLV----PDGSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp CSHHHHHHHHHHHGGGC----CCSSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CCHHHHHHHHHHhcccC----CCCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 46677777777776632 1122335678999999999999999999844
No 453
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=22.39 E-value=81 Score=27.04 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=35.5
Q ss_pred EEcCCCCC---CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 10 YVGNLPGD---TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 10 ~V~nL~~~---~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
+|||+..- --...+.++..+||+|..+.+- +.-+|...+++.+..++.
T Consensus 20 liG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvv~~~~~v~~il~ 70 (476)
T 3e6i_A 20 IIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG------SQRMVVMHGYKAVKEALL 70 (476)
T ss_dssp TTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHH
T ss_pred cccChhhhccccHhHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHh
Confidence 56777532 2245678888999999887762 356788899999999986
No 454
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.24 E-value=45 Score=21.36 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=16.8
Q ss_pred cCCCCCCCHHHHHHHHhcC
Q 022425 12 GNLPGDTRMREVEDLFYKY 30 (297)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~ 30 (297)
|.|+..+|+++|.+++++.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999999876
No 455
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=21.79 E-value=1.7e+02 Score=21.16 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=35.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEcCHHHHHHHHH
Q 022425 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIR 165 (297)
Q Consensus 112 l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~ 165 (297)
.++-.+...++.-+|++.+++ |+ .|..|.....+.+ .-|||.+....+|.+...
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344445667788888888776 45 6666776655544 379999987776665443
No 456
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.63 E-value=36 Score=21.30 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=18.5
Q ss_pred CcEEEEEEcChHHHHHHHHhcCC--cccCCcEEEEEEcc
Q 022425 45 PGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAH 81 (297)
Q Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~~~ 81 (297)
+||+||+-.+-.+---=+..|.+ ..-.|..+..++..
T Consensus 14 KGfGFI~~~dg~~dFvH~s~i~~~g~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 14 KGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTT 52 (74)
T ss_dssp TTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEE
T ss_pred CCeEEEecCCCCceEEEHhHcccCCCCCCCCEEEEEEEe
Confidence 89999987653111111111221 33456666666654
No 457
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=21.26 E-value=76 Score=19.96 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHhcCCC-eeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCcE
Q 022425 17 DTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (297)
Q Consensus 17 ~~t~~~l~~~F~~~G~-V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (297)
.-|+++|..+++.|-+ -..|+ .+|-..+.++..+|.+..+.+.|+-++
T Consensus 32 vktedelkkyleefrkesqnik----------vlilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNIK----------VLILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSEE----------EEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred eccHHHHHHHHHHHHhhccCeE----------EEEEEcChHHHHHHHHHHHhhceeeee
Confidence 3588999998888752 11222 345566777777777755656655443
No 458
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.23 E-value=1.8e+02 Score=18.88 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHHhcCC-CeeEEEE--ecCC--CCCcEEEEEEcChHHHHHHHH
Q 022425 24 EDLFYKYG-PIVDIDL--KIPP--RPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 24 ~~~F~~~G-~V~~~~~--~~~~--~~~g~afV~f~~~~~A~~A~~ 63 (297)
..+|.+|| .++---. ...| .......|+|.+.+.|..++.
T Consensus 27 ~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 27 ASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 45667786 3322111 1123 246789999999999998875
No 459
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=21.22 E-value=34 Score=16.56 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHhcCCCeeE
Q 022425 13 NLPGDTRMREVEDLFYKYGPIVD 35 (297)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~V~~ 35 (297)
|-|.++...-=.+.|.+||.+..
T Consensus 2 naPFeiGi~ls~~~y~~yG~~Lq 24 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRALX 24 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC-
T ss_pred CCceeEeeEecHHHHHHHhHHhc
Confidence 34555544445567888998753
No 460
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.19 E-value=2.6e+02 Score=20.74 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=31.8
Q ss_pred ceEEEeCCCC---------CCCHHHHHHHH--HhcCCeeEEEEEecC-CCcEEEEEEcCHH
Q 022425 110 YRVLVTGLPS---------SASWQDLKDHM--RRAGDVCFSQVFRDR-GGMTGIVDYTSYD 158 (297)
Q Consensus 110 ~~l~V~~l~~---------~~~~~~l~~~f--~~~g~i~~~~~~~~~-~~~~~fv~f~~~~ 158 (297)
+.++|.|++. .....+|.+.| ..|..+.-..+.... ..+++.|+|..--
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 4566777765 13567899866 888887644443322 2358999998743
No 461
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.81 E-value=38 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.7
Q ss_pred CHHHHHHHHhcCCCeeE
Q 022425 19 RMREVEDLFYKYGPIVD 35 (297)
Q Consensus 19 t~~~l~~~F~~~G~V~~ 35 (297)
|-=||.+++.+||.|+.
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 55689999999997765
No 462
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.63 E-value=83 Score=22.62 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=26.7
Q ss_pred eeEEEEecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 022425 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (297)
Q Consensus 33 V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 68 (297)
|..+.++. ...||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 56665542 35899999999999999999888773
No 463
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=20.33 E-value=1.5e+02 Score=25.52 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=30.0
Q ss_pred EEEcCCCCC--CCHHHHHHHHhcCCCeeEEEEecCCCCCcEEEEEEcChHHHHHHHH
Q 022425 9 LYVGNLPGD--TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (297)
Q Consensus 9 l~V~nL~~~--~t~~~l~~~F~~~G~V~~~~~~~~~~~~g~afV~f~~~~~A~~A~~ 63 (297)
-+||||..- -....+.++..+||+|..+.+- +.-+|...+++.+..++.
T Consensus 18 P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 18 PLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG------SCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ----------CCHHHHHHHHHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT
T ss_pred CeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC------CccEEEECCHHHHHHHHH
Confidence 467877432 2245577888899999887763 345777889999988875
No 464
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.09 E-value=1.4e+02 Score=17.18 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=37.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEcC---HHHHHHHHH
Q 022425 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS---YDDMKYAIR 165 (297)
Q Consensus 110 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~fv~f~~---~~~a~~a~~ 165 (297)
..+.|.|+.-......++..+.....+..+.+..... .+.|.|.. .++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHHH
Confidence 3677888887778889999999988888777765433 67788743 334444444
Done!