Your job contains 1 sequence.
>022427
MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE
KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL
LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI
FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE
SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022427
(297 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040189 - symbol:AT2G25100 species:3702 "Arabi... 1121 1.2e-113 1
MGI|MGI:1916974 - symbol:Rnaseh2a "ribonuclease H2, large... 654 3.7e-64 1
RGD|1307248 - symbol:Rnaseh2a "ribonuclease H2, subunit A... 649 1.2e-63 1
UNIPROTKB|Q5U209 - symbol:Rnaseh2a "Ribonuclease H2 subun... 649 1.2e-63 1
UNIPROTKB|O75792 - symbol:RNASEH2A "Ribonuclease H2 subun... 642 6.9e-63 1
ZFIN|ZDB-GENE-040426-976 - symbol:rnaseh2a "ribonuclease ... 638 1.8e-62 1
UNIPROTKB|F1SDX8 - symbol:RNASEH2A "Ribonuclease" species... 637 2.3e-62 1
FB|FBgn0031252 - symbol:CG13690 species:7227 "Drosophila ... 633 6.2e-62 1
UNIPROTKB|Q2TBT5 - symbol:RNASEH2A "Ribonuclease H2 subun... 632 7.9e-62 1
UNIPROTKB|E2RQK5 - symbol:RNASEH2A "Ribonuclease" species... 631 1.0e-61 1
GENEDB_PFALCIPARUM|PFF1150w - symbol:PFF1150w "ribonuclea... 608 2.7e-59 1
UNIPROTKB|C6KT75 - symbol:PFF1150w "Ribonuclease" species... 608 2.7e-59 1
DICTYBASE|DDB_G0292584 - symbol:rnaseh2A "ribonuclease H2... 570 2.9e-55 1
WB|WBGene00004383 - symbol:rnh-2 species:6239 "Caenorhabd... 529 6.5e-51 1
CGD|CAL0003240 - symbol:RNH35 species:5476 "Candida albic... 479 1.3e-45 1
POMBASE|SPAC4G9.02 - symbol:rnh201 "ribonuclease H2 compl... 476 2.7e-45 1
SGD|S000005016 - symbol:RNH201 "Ribonuclease H2 catalytic... 470 1.2e-44 1
UNIPROTKB|G4MNH9 - symbol:MGG_06959 "Ribonuclease" specie... 436 4.6e-41 1
ASPGD|ASPL0000033104 - symbol:AN5114 species:162425 "Emer... 416 6.1e-39 1
DICTYBASE|DDB_G0277705 - symbol:DDB_G0277705 species:4468... 205 1.9e-15 1
UNIPROTKB|P10442 - symbol:rnhB "RNAse HII, degrades RNA ... 108 8.3e-09 2
TIGR_CMR|CBU_1339 - symbol:CBU_1339 "ribonuclease HII" sp... 115 1.9e-08 2
TIGR_CMR|APH_1022 - symbol:APH_1022 "ribonuclease HII" sp... 108 6.6e-08 2
TIGR_CMR|BA_3975 - symbol:BA_3975 "ribonuclease HII" spec... 112 3.3e-07 2
TIGR_CMR|CHY_1426 - symbol:CHY_1426 "ribonuclease HII" sp... 111 1.7e-06 2
UNIPROTKB|P52021 - symbol:rnhB "Ribonuclease HII" species... 110 2.2e-06 2
TIGR_CMR|VC_2246 - symbol:VC_2246 "ribonuclease HII" spec... 110 2.2e-06 2
TIGR_CMR|ECH_0946 - symbol:ECH_0946 "ribonuclease HII" sp... 102 4.0e-06 2
TIGR_CMR|GSU_0649 - symbol:GSU_0649 "ribonuclease HII" sp... 90 2.3e-05 2
TIGR_CMR|DET_0780 - symbol:DET_0780 "ribonuclease HII" sp... 103 4.2e-05 2
TIGR_CMR|CPS_1569 - symbol:CPS_1569 "ribonuclease HII" sp... 113 0.00019 1
TIGR_CMR|CJE_0009 - symbol:CJE_0009 "ribonuclease HII" sp... 110 0.00026 1
>TAIR|locus:2040189 [details] [associations]
symbol:AT2G25100 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016070 "RNA metabolic process" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 EMBL:AK117633
EMBL:BT005597 EMBL:AY087961 IPI:IPI00547479 PIR:C84644
RefSeq:NP_565584.1 UniGene:At.39066 ProteinModelPortal:Q9SEZ6
SMR:Q9SEZ6 STRING:Q9SEZ6 PaxDb:Q9SEZ6 PRIDE:Q9SEZ6
EnsemblPlants:AT2G25100.1 GeneID:817048 KEGG:ath:AT2G25100
TAIR:At2g25100 eggNOG:COG0164 HOGENOM:HOG000100290
InParanoid:Q9SEZ6 KO:K10743 OMA:WRTAQTI PhylomeDB:Q9SEZ6
ProtClustDB:CLSN2688398 Genevestigator:Q9SEZ6 GermOnline:AT2G25100
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 Uniprot:Q9SEZ6
Length = 296
Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
Identities = 209/297 (70%), Positives = 244/297 (82%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWL 180
Query: 181 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 240
EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE
Sbjct: 181 VEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWE 240
Query: 241 SDEMDEDVSSRRSGKRQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 297
+DE +E+ + S KRQ KLS GF CKFL+ARK++QLT F
Sbjct: 241 ADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>MGI|MGI:1916974 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, large subunit"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=ISO] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 MGI:MGI:1916974 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:AK010292
EMBL:AK146518 EMBL:BC038158 IPI:IPI00229787 RefSeq:NP_081463.1
UniGene:Mm.182470 PDB:3KIO PDB:3P5J PDBsum:3KIO PDBsum:3P5J
ProteinModelPortal:Q9CWY8 SMR:Q9CWY8 STRING:Q9CWY8
PhosphoSite:Q9CWY8 PaxDb:Q9CWY8 PRIDE:Q9CWY8 DNASU:69724
Ensembl:ENSMUST00000109736 Ensembl:ENSMUST00000109738
Ensembl:ENSMUST00000147812 GeneID:69724 KEGG:mmu:69724
UCSC:uc009mok.1 InParanoid:Q9CWY8 ChiTaRS:RNASEH2A
EvolutionaryTrace:Q9CWY8 NextBio:330190 Bgee:Q9CWY8
CleanEx:MM_RNASEH2A Genevestigator:Q9CWY8
GermOnline:ENSMUSG00000052926 Uniprot:Q9CWY8
Length = 301
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 125/244 (51%), Positives = 163/244 (66%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 251
GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PE 265
Query: 252 RSGK 255
R GK
Sbjct: 266 RPGK 269
>RGD|1307248 [details] [associations]
symbol:Rnaseh2a "ribonuclease H2, subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006401 "RNA catabolic
process" evidence=ISO;ISS] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 122/236 (51%), Positives = 159/236 (67%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 247
GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>UNIPROTKB|Q5U209 [details] [associations]
symbol:Rnaseh2a "Ribonuclease H2 subunit A" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 RGD:1307248 GO:GO:0005634
GO:GO:0046872 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585 OrthoDB:EOG4PNXHM
GO:GO:0032299 EMBL:BC086345 EMBL:BC086539 IPI:IPI00360500
RefSeq:NP_001013252.1 UniGene:Rn.3693 ProteinModelPortal:Q5U209
STRING:Q5U209 GeneID:364974 KEGG:rno:364974 NextBio:686384
ArrayExpress:Q5U209 Genevestigator:Q5U209 Uniprot:Q5U209
Length = 301
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 122/236 (51%), Positives = 159/236 (67%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 247
GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>UNIPROTKB|O75792 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0032299 "ribonuclease H2 complex" evidence=IDA]
[GO:0004523 "ribonuclease H activity" evidence=IDA] [GO:0006260
"DNA replication" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=IDA] [GO:0004540 "ribonuclease activity" evidence=TAS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 GO:GO:0003723 GO:GO:0006401 SUPFAM:SSF53098
EMBL:CH471106 GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 CTD:10535 HOVERGEN:HBG023585
OrthoDB:EOG4PNXHM GO:GO:0032299 EMBL:Z97029 EMBL:AK315327
EMBL:BC011748 IPI:IPI00290192 RefSeq:NP_006388.2 UniGene:Hs.532851
PDB:3P56 PDB:3PUF PDBsum:3P56 PDBsum:3PUF ProteinModelPortal:O75792
SMR:O75792 STRING:O75792 PhosphoSite:O75792 PaxDb:O75792
PRIDE:O75792 DNASU:10535 Ensembl:ENST00000221486 GeneID:10535
KEGG:hsa:10535 UCSC:uc002mvg.1 GeneCards:GC19P012918
HGNC:HGNC:18518 HPA:HPA042692 MIM:606034 MIM:610333
neXtProt:NX_O75792 Orphanet:51 PharmGKB:PA38565 InParanoid:O75792
PhylomeDB:O75792 EvolutionaryTrace:O75792 GenomeRNAi:10535
NextBio:39969 Bgee:O75792 CleanEx:HS_RNASEH2A Genevestigator:O75792
GermOnline:ENSG00000104889 Uniprot:O75792
Length = 299
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 122/240 (50%), Positives = 160/240 (66%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 252
SGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE D E+ R
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSASENQEGLR 266
>ZFIN|ZDB-GENE-040426-976 [details] [associations]
symbol:rnaseh2a "ribonuclease H2, subunit A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 ZFIN:ZDB-GENE-040426-976 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
HOVERGEN:HBG023585 EMBL:BC046061 IPI:IPI00493246 UniGene:Dr.14704
HSSP:Q57599 ProteinModelPortal:Q7ZUZ9 STRING:Q7ZUZ9 PRIDE:Q7ZUZ9
InParanoid:Q7ZUZ9 ArrayExpress:Q7ZUZ9 Bgee:Q7ZUZ9 Uniprot:Q7ZUZ9
Length = 307
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 123/240 (51%), Positives = 160/240 (66%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++G
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG 208
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 252
SGYP DP+TK+WL + +FG+P VRFSW T + V V W+ DE D + ++ R
Sbjct: 209 SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEEDGEKAAAR 268
>UNIPROTKB|F1SDX8 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9823 "Sus scrofa"
[GO:0032299 "ribonuclease H2 complex" evidence=IEA] [GO:0006401
"RNA catabolic process" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 CTD:10535 GeneTree:ENSGT00390000010768
GO:GO:0032299 EMBL:CU914382 RefSeq:NP_001231373.1 UniGene:Ssc.19088
Ensembl:ENSSSCT00000015011 GeneID:100523170 KEGG:ssc:100523170
Uniprot:F1SDX8
Length = 301
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 120/241 (49%), Positives = 159/241 (65%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++
Sbjct: 148 ETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 251
GSGYP DP+TKAWL H +FGFP VRFSW T S K+ +V WE + + R
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGDQEGLR 267
Query: 252 R 252
+
Sbjct: 268 K 268
>FB|FBgn0031252 [details] [associations]
symbol:CG13690 species:7227 "Drosophila melanogaster"
[GO:0004523 "ribonuclease H activity" evidence=ISS;NAS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 EMBL:AE014134
GO:GO:0046872 GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 OMA:IAEVYVD
EMBL:BT023255 RefSeq:NP_608521.1 UniGene:Dm.30792
ProteinModelPortal:Q9VPP5 SMR:Q9VPP5 STRING:Q9VPP5 PaxDb:Q9VPP5
PRIDE:Q9VPP5 EnsemblMetazoa:FBtr0078090 GeneID:33213
KEGG:dme:Dmel_CG13690 UCSC:CG13690-RA FlyBase:FBgn0031252
InParanoid:Q9VPP5 OrthoDB:EOG4PC87Q PhylomeDB:Q9VPP5
GenomeRNAi:33213 NextBio:782466 Bgee:Q9VPP5 GermOnline:CG13690
Uniprot:Q9VPP5
Length = 347
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 132/288 (45%), Positives = 172/288 (59%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 249
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 250 SRRSGKRQLKLSDIGFXXXXXXXXXXXXXXXXXCKFLEARKLEQLTHF 297
+ +G + K C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF--------FKGTTKSGEIIREECRFFKQRHLESVMEF 347
>UNIPROTKB|Q2TBT5 [details] [associations]
symbol:RNASEH2A "Ribonuclease H2 subunit A" species:9913
"Bos taurus" [GO:0032299 "ribonuclease H2 complex" evidence=ISS]
[GO:0004523 "ribonuclease H activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0005634 GO:GO:0046872 GO:GO:0003723
GO:GO:0006401 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
EMBL:BC109682 IPI:IPI00706063 RefSeq:NP_001033623.1
UniGene:Bt.44367 ProteinModelPortal:Q2TBT5 STRING:Q2TBT5
PRIDE:Q2TBT5 Ensembl:ENSBTAT00000012731 GeneID:512830
KEGG:bta:512830 CTD:10535 GeneTree:ENSGT00390000010768
HOVERGEN:HBG023585 InParanoid:Q2TBT5 OrthoDB:EOG4PNXHM
NextBio:20870572 GO:GO:0032299 Uniprot:Q2TBT5
Length = 299
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 120/238 (50%), Positives = 157/238 (65%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R+ LF
Sbjct: 22 PVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESERDRLFA 81
Query: 68 DLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++
Sbjct: 82 KMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNVAQVFV 141
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +
Sbjct: 142 DTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKFVEKLQ 201
Query: 187 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDE 243
++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V WE E
Sbjct: 202 DLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWEDSE 259
>UNIPROTKB|E2RQK5 [details] [associations]
symbol:RNASEH2A "Ribonuclease" species:9615 "Canis lupus
familiaris" [GO:0032299 "ribonuclease H2 complex" evidence=IEA]
[GO:0006401 "RNA catabolic process" evidence=IEA] [GO:0004523
"ribonuclease H activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723
GO:GO:0006401 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 KO:K10743
OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 GO:GO:0032299
EMBL:AAEX03012405 RefSeq:XP_003639769.1 ProteinModelPortal:E2RQK5
Ensembl:ENSCAFT00000027175 GeneID:100856442 KEGG:cfa:100856442
NextBio:20858991 Uniprot:E2RQK5
Length = 299
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 121/236 (51%), Positives = 157/236 (66%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF + K
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 247
GSGYP DP+TKAWL H +FGFP VRFSW T S + E V+WE D + D
Sbjct: 208 GSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIWE-DSLTGD 262
>GENEDB_PFALCIPARUM|PFF1150w [details] [associations]
symbol:PFF1150w "ribonuclease H1 large subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006401 "RNA
catabolic process" evidence=ISS] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
Pfam:PF01351 GO:GO:0003723 GO:GO:0006401 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505 HOGENOM:HOG000100290
KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 RefSeq:XP_966221.1
ProteinModelPortal:C6KT75 EnsemblProtists:PFF1150w:mRNA
GeneID:3885875 KEGG:pfa:PFF1150w EuPathDB:PlasmoDB:PF3D7_0623900
ProtClustDB:CLSZ2514453 Uniprot:C6KT75
Length = 288
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 124/235 (52%), Positives = 160/235 (68%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE++F +K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
GW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WESDEMDED 247
SGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W DE D
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND 251
>UNIPROTKB|C6KT75 [details] [associations]
symbol:PFF1150w "Ribonuclease" species:36329 "Plasmodium
falciparum 3D7" [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0006401
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 EMBL:AL844505
HOGENOM:HOG000100290 KO:K10743 OMA:WRTAQTI Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
RefSeq:XP_966221.1 ProteinModelPortal:C6KT75
EnsemblProtists:PFF1150w:mRNA GeneID:3885875 KEGG:pfa:PFF1150w
EuPathDB:PlasmoDB:PF3D7_0623900 ProtClustDB:CLSZ2514453
Uniprot:C6KT75
Length = 288
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 124/235 (52%), Positives = 160/235 (68%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE++F +K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
GW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-WESDEMDED 247
SGYPGDP TK +L ++ +FGFPS+VRFSW T + +++ E + W DE D
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND 251
>DICTYBASE|DDB_G0292584 [details] [associations]
symbol:rnaseh2A "ribonuclease H2 subunit A"
species:44689 "Dictyostelium discoideum" [GO:0016070 "RNA metabolic
process" evidence=IEA;IC] [GO:0004523 "ribonuclease H activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=ISS] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0292584 Pfam:PF01351 GenomeReviews:CM000155_GR
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0016070 GO:GO:0004523 eggNOG:COG0164 KO:K10743 OMA:WRTAQTI
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GO:GO:0032299 RefSeq:XP_629507.1 HSSP:O59351
ProteinModelPortal:Q54D13 STRING:Q54D13 EnsemblProtists:DDB0266383
GeneID:8628758 KEGG:ddi:DDB_G0292584 Uniprot:Q54D13
Length = 289
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 118/256 (46%), Positives = 165/256 (64%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ET 184
+KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ +
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQ 197
Query: 185 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWES 241
E + +FGSGYP DP +K WL ++ +FG+P+ +RFSW T + + V+ + E+
Sbjct: 198 DEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLEN 257
Query: 242 DEMDEDVSSRRSGKRQ 257
D++ + ++ K++
Sbjct: 258 DKLKQHFQENQNDKKR 273
>WB|WBGene00004383 [details] [associations]
symbol:rnh-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351 GO:GO:0046872
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070
GO:GO:0004523 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 GeneTree:ENSGT00390000010768 EMBL:AF181619
EMBL:Z66524 RefSeq:NP_495796.1 UniGene:Cel.19550
ProteinModelPortal:Q9U6P6 SMR:Q9U6P6 STRING:Q9U6P6 PaxDb:Q9U6P6
EnsemblMetazoa:T13H5.7 GeneID:266861 KEGG:cel:CELE_T13H5.7
UCSC:T13H5.7 CTD:266861 WormBase:T13H5.7 InParanoid:Q9U6P6
OMA:IAEVYVD NextBio:953296 Uniprot:Q9U6P6
Length = 297
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 114/245 (46%), Positives = 146/245 (59%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENM 188
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ +
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200
Query: 189 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 247
+GSGYPGDP TK +L +FGF SLVR SW T ++ K V WE DE +
Sbjct: 201 DAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGK 260
Query: 248 VSSRR 252
S+R
Sbjct: 261 SQSKR 265
>CGD|CAL0003240 [details] [associations]
symbol:RNH35 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0032299 "ribonuclease H2 complex"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 CGD:CAL0003240 Pfam:PF01351 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:COG0164 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_720885.1 RefSeq:XP_721398.1
RefSeq:XP_888785.1 ProteinModelPortal:Q5AGX6 STRING:Q5AGX6
GeneID:3636987 GeneID:3637501 GeneID:3704096 KEGG:cal:CaO19.13915
KEGG:cal:CaO19.6562 KEGG:cal:CaO19_6562 Uniprot:Q5AGX6
Length = 431
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 105/243 (43%), Positives = 147/243 (60%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
+ P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L + KREELF+
Sbjct: 151 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 210
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
D +++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 211 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 270
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ +
Sbjct: 271 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FY 328
Query: 182 EETAENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTCTSHF--KDIVEV 237
E + + GSGYP DP T WL + +FG+ +RFSW T + EV
Sbjct: 329 NENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEV 388
Query: 238 LWE 240
++E
Sbjct: 389 VYE 391
>POMBASE|SPAC4G9.02 [details] [associations]
symbol:rnh201 "ribonuclease H2 complex subunit Rnh201
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006261
"DNA-dependent DNA replication" evidence=ISO] [GO:0032299
"ribonuclease H2 complex" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IC] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001352 InterPro:IPR004649
InterPro:IPR012337 InterPro:IPR023160 Pfam:PF01351
PomBase:SPAC4G9.02 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003723
SUPFAM:SSF53098 GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GO:GO:0032299 OMA:IAEVYVD PIR:T38861 RefSeq:NP_593684.1
ProteinModelPortal:Q10236 STRING:Q10236 EnsemblFungi:SPAC4G9.02.1
GeneID:2541542 KEGG:spo:SPAC4G9.02 OrthoDB:EOG4HMNKD
NextBio:20802639 Uniprot:Q10236
Length = 326
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 115/246 (46%), Positives = 145/246 (58%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 KVND---SVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
K N+ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL-----ECAR 233
Query: 186 ENMH-RNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCT------SHFKDIVEV 237
E++ N+GSGY D T WL + IFG+ +VR+SW T S + +E+
Sbjct: 234 ESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIEI 293
Query: 238 LWESDE 243
W D+
Sbjct: 294 DWHEDD 299
>SGD|S000005016 [details] [associations]
symbol:RNH201 "Ribonuclease H2 catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0032299
"ribonuclease H2 complex" evidence=IDA] [GO:0004523 "ribonuclease H
activity" evidence=IEA;ISS;IMP;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer"
evidence=IGI;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
SGD:S000005016 Pfam:PF01351 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 EMBL:BK006947 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004523 EMBL:X86470 GO:GO:0043137 eggNOG:COG0164
HOGENOM:HOG000100290 KO:K10743 Gene3D:1.10.10.460
InterPro:IPR024567 PANTHER:PTHR10954 TIGRFAMs:TIGR00729
GeneTree:ENSGT00390000010768 GO:GO:0032299 OMA:IAEVYVD
OrthoDB:EOG4HMNKD EMBL:Z71348 PIR:S53908 RefSeq:NP_014327.1
ProteinModelPortal:P53942 SMR:P53942 DIP:DIP-4565N IntAct:P53942
MINT:MINT-532801 STRING:P53942 PaxDb:P53942 PeptideAtlas:P53942
EnsemblFungi:YNL072W GeneID:855652 KEGG:sce:YNL072W CYGD:YNL072w
NextBio:979902 Genevestigator:P53942 GermOnline:YNL072W
Uniprot:P53942
Length = 307
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 115/270 (42%), Positives = 155/270 (57%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQ-QTLA-TLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ +T+ F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDL-KVNDS---VGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + + N+ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRDI- 202
Query: 176 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI 234
+ E + GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D
Sbjct: 203 ----LVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 235 ----VEVLWESDEMDEDVSSRRSGKRQLKL 260
+ + WE MD ++ + K QL+L
Sbjct: 259 SKNSIPIKWEEQYMDSRKNAAQKTK-QLQL 287
>UNIPROTKB|G4MNH9 [details] [associations]
symbol:MGG_06959 "Ribonuclease" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:CM001231 GO:GO:0004523 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 RefSeq:XP_003709705.1 EnsemblFungi:MGG_06959T0
GeneID:2685132 KEGG:mgr:MGG_06959 Uniprot:G4MNH9
Length = 355
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 103/246 (41%), Positives = 136/246 (55%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCT 114
Query: 70 --------KVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIG 118
+N + GWA+ + R++ A M+ NLN + D+ + LI V++ G
Sbjct: 115 PTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRG 174
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL-- 176
+ + E+Y+DTVG YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L
Sbjct: 175 VNVAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEV 234
Query: 177 --RGWIFE----ETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 230
+ + E E E+ +GSGYP D WL + H +FG+ + RFSWGT
Sbjct: 235 LYKNVLSEIAKAEGGEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGTV--- 291
Query: 231 FKDIVE 236
KD++E
Sbjct: 292 -KDMLE 296
>ASPGD|ASPL0000033104 [details] [associations]
symbol:AN5114 species:162425 "Emericella nidulans"
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004523 "ribonuclease H activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001352 InterPro:IPR004649 InterPro:IPR012337
InterPro:IPR023160 Pfam:PF01351 GO:GO:0003723 EMBL:BN001305
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0016070 GO:GO:0004523
EMBL:AACD01000088 eggNOG:COG0164 HOGENOM:HOG000100290 KO:K10743
Gene3D:1.10.10.460 InterPro:IPR024567 PANTHER:PTHR10954
TIGRFAMs:TIGR00729 OMA:IAEVYVD OrthoDB:EOG4HMNKD RefSeq:XP_662718.1
ProteinModelPortal:Q5B2W6 STRING:Q5B2W6
EnsemblFungi:CADANIAT00003098 GeneID:2871406 KEGG:ani:AN5114.2
Uniprot:Q5B2W6
Length = 339
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 104/251 (41%), Positives = 141/251 (56%)
Query: 11 ASNP----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREE 64
A+NP I+GIDEAGRGPVLGPMVY Y P S +L + +F DSK L R
Sbjct: 55 ATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRAN 114
Query: 65 LFEDL-----KVNDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNI 117
L L +++S GWA ++ R++S+ M+ NLN + D+ I LI V+
Sbjct: 115 LMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEE 174
Query: 118 GIL-LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
L + EVY+DT+G+ YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 175 RKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL 234
Query: 177 RGWIFEETAEN--MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS--HFK 232
+E EN + +GSGYP D + W+ + +FG+ + RFSWGT K
Sbjct: 235 -DVCYEVLKENGGVGDGWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTAKEMLEVK 293
Query: 233 DIVEVLWESDE 243
+V W ++E
Sbjct: 294 GGEKVDWPAEE 304
>DICTYBASE|DDB_G0277705 [details] [associations]
symbol:DDB_G0277705 species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR001352
InterPro:IPR004649 InterPro:IPR012337 InterPro:IPR023160
dictyBase:DDB_G0277705 Pfam:PF01351 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0016070 EMBL:AAFI02000021 GO:GO:0004523
eggNOG:COG0164 Gene3D:1.10.10.460 InterPro:IPR024567
PANTHER:PTHR10954 TIGRFAMs:TIGR00729 KO:K03470 RefSeq:XP_642511.1
ProteinModelPortal:Q54ZA4 EnsemblProtists:DDB0218016 GeneID:8621159
KEGG:ddi:DDB_G0277705 InParanoid:Q54ZA4 Uniprot:Q54ZA4
Length = 507
Score = 205 (77.2 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 58/215 (26%), Positives = 107/215 (49%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+ +DEAG+G +LGP+ C+ ++ L ++ DSK L ++RE L+ D+ + ++
Sbjct: 137 ISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLY-DIIIEHALY 195
Query: 77 WAVDIIDPRELSAK--MLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ I+ ++ + + N+I N ++ DS I + + I++ + ++T
Sbjct: 196 YQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDS-INNLPKNQQCKIIIDSIEMNT--- 251
Query: 132 AEKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
+KY FP + + KAD + V ASI+AKV RDR W+ ++ N
Sbjct: 252 -QKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDR----WM-KQLETNTS 305
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSW 224
GSGYP DP T +++ + + +P+ +R SW
Sbjct: 306 HIIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
>UNIPROTKB|P10442 [details] [associations]
symbol:rnhB "RNAse HII, degrades RNA of DNA-RNA hybrids"
species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004523 "ribonuclease H activity" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003723 EMBL:U70214 EMBL:M19334 SUPFAM:SSF53098
GO:GO:0004523 GO:GO:0043137 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:G64742 RefSeq:NP_414725.1
RefSeq:YP_488485.1 ProteinModelPortal:P10442 SMR:P10442
IntAct:P10442 EnsemblBacteria:EBESCT00000003492
EnsemblBacteria:EBESCT00000014844 GeneID:12932591 GeneID:944852
KEGG:ecj:Y75_p0179 KEGG:eco:b0183 PATRIC:32115477 EchoBASE:EB0854
EcoGene:EG10861 OMA:KEFTFSQ BioCyc:EcoCyc:EG10861-MONOMER
BioCyc:ECOL316407:JW0178-MONOMER BioCyc:MetaCyc:EG10861-MONOMER
BRENDA:3.1.26.4 Genevestigator:P10442 Uniprot:P10442
Length = 198
Score = 108 (43.1 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEIK-EKAL 66
Query: 76 GWAVDIIDPREL 87
W++ +P E+
Sbjct: 67 SWSLGRAEPHEI 78
Score = 79 (32.9 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 153 KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSGYPGDPETKAWLTDHK 210
K DS P +S ASI+AKVTRD + +F + H+ + + + + + T+H
Sbjct: 124 KGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHH 183
Query: 211 HIIFG 215
FG
Sbjct: 184 RRSFG 188
>TIGR_CMR|CBU_1339 [details] [associations]
symbol:CBU_1339 "ribonuclease HII" species:227377
"Coxiella burnetii RSA 493" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
ProtClustDB:PRK00015 HAMAP:MF_00052_B OMA:GCSLANE
RefSeq:NP_820328.1 ProteinModelPortal:Q83BZ8 PRIDE:Q83BZ8
GeneID:1209245 KEGG:cbu:CBU_1339 PATRIC:17931415
BioCyc:CBUR227377:GJ7S-1330-MONOMER Uniprot:Q83BZ8
Length = 202
Score = 115 (45.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+A K SN I G+DEAGRGP+ GP++ + + ADSK L +KRE
Sbjct: 2 DAPFAKTPSNLLIAGVDEAGRGPLAGPVITAAVIL----NPEIIIEGLADSKKLSLKKRE 57
Query: 64 ELFEDLKVNDSVGWAVDIIDPREL 87
EL+E + + + +A+ D E+
Sbjct: 58 ELYEKI-ITNCKAFAIARADVEEI 80
Score = 67 (28.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 153 KADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRNFGS 194
+ D P +S ASI+AKVTRDR + + + + +H+ +G+
Sbjct: 126 QGDQNVPAISAASILAKVTRDREMLKYDAQYPDYGFAIHKGYGT 169
>TIGR_CMR|APH_1022 [details] [associations]
symbol:APH_1022 "ribonuclease HII" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004521 "endoribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 RefSeq:YP_505581.1 ProteinModelPortal:Q2GJ70
STRING:Q2GJ70 GeneID:3930611 KEGG:aph:APH_1022 PATRIC:20950790
HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA ProtClustDB:PRK00015
BioCyc:APHA212042:GHPM-1029-MONOMER HAMAP:MF_00052_B Uniprot:Q2GJ70
Length = 210
Score = 108 (43.1 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
SN ++G+DE G G + GP+V +Y P + + N DSK L +KR+ L+++L
Sbjct: 14 SNAIVVGVDEVGYGSIAGPVVAAAVYIPDRNVECIP--NIKDSKLLTPKKRDALYKELLS 71
Query: 72 NDSVGWAVDIIDPRE 86
+ G + ID E
Sbjct: 72 HTVCGTGLASIDEIE 86
Score = 72 (30.4 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+L ++PS K +++ D L ++ ASIVAKVTRD +R + ++ E H N GY
Sbjct: 120 ELKSQWPS-KSIIN--GDELSISIAAASIVAKVTRDNMMRE-LHDQYPE-YHWNKNCGY 173
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 81 IID-PRELSAKMLNKNKINLNEISHD-SAIGLITRV 114
++D REL ++ +K+ IN +E+S +A ++ +V
Sbjct: 114 LVDGSRELKSQWPSKSIINGDELSISIAAASIVAKV 149
>TIGR_CMR|BA_3975 [details] [associations]
symbol:BA_3975 "ribonuclease HII" species:198094 "Bacillus
anthracis str. Ames" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
InterPro:IPR024567 PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B
RefSeq:NP_846217.1 RefSeq:YP_020614.1 RefSeq:YP_029939.1
ProteinModelPortal:Q81WJ9 DNASU:1086784
EnsemblBacteria:EBBACT00000010317 EnsemblBacteria:EBBACT00000015549
EnsemblBacteria:EBBACT00000023093 GeneID:1086784 GeneID:2818571
GeneID:2848416 KEGG:ban:BA_3975 KEGG:bar:GBAA_3975 KEGG:bat:BAS3688
BioCyc:BANT260799:GJAJ-3746-MONOMER
BioCyc:BANT261594:GJ7F-3863-MONOMER Uniprot:Q81WJ9
Length = 257
Score = 112 (44.5 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE + ++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPEDFY--IPGLN--DSKKLSEAKRERFYGEIKAK-AI 128
Query: 76 GWAVDIIDPR 85
V I+ P+
Sbjct: 129 AIGVGIVSPQ 138
Score = 65 (27.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFGS 194
KL P + K D+ +S ASI+AKVTRDR ++ G + H +G+
Sbjct: 173 KLPAPIPQTSII---KGDAKSISISAASIIAKVTRDRMMKELGEKYPAYGFEQHMGYGT 228
>TIGR_CMR|CHY_1426 [details] [associations]
symbol:CHY_1426 "ribonuclease HII" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] InterPro:IPR001352
InterPro:IPR012337 InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164
InterPro:IPR024567 PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
OMA:NRCPKLA HAMAP:MF_00052_B RefSeq:YP_360258.1
ProteinModelPortal:Q3AC76 STRING:Q3AC76 GeneID:3727951
KEGG:chy:CHY_1426 PATRIC:21275983
BioCyc:CHYD246194:GJCN-1425-MONOMER Uniprot:Q3AC76
Length = 231
Score = 111 (44.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G DEAGRGPV GP+V + P Y + ++ DSK L +KRE+LFE++ +N
Sbjct: 40 VAGGDEAGRGPVAGPVVAAIVVIKPGIY---IPEVD--DSKKLSSKKREKLFEEI-INLV 93
Query: 75 VGWAVDIIDP 84
W+V ++ P
Sbjct: 94 TDWSVAVVGP 103
Score = 57 (25.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 147 KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWL 206
K V KAD + V+ ASI+AKV RD+ + E ++F GY G + K +L
Sbjct: 146 KQVSMVKADEISFAVACASILAKVIRDKIM---------EQYDKDF-PGY-GFKKNKGYL 194
Query: 207 T-DHKHII 213
T +H+ +
Sbjct: 195 TREHREAL 202
>UNIPROTKB|P52021 [details] [associations]
symbol:rnhB "Ribonuclease HII" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004540 "ribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
Length = 206
Score = 110 (43.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + + + LN DSK L E+KR LF +++V ++
Sbjct: 21 IAGVDEVGRGPLVGDVVTAAVILDPN--RPIMGLN--DSKKLSEKKRLALFPEIQVK-AL 75
Query: 76 GWAVDIIDPREL 87
WAV P+E+
Sbjct: 76 AWAVGRCSPQEI 87
Score = 54 (24.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 153 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG----SGYP 197
K D +S ASI+AKV RD+ + E + + FG GYP
Sbjct: 133 KGDLRVAQISAASIIAKVIRDQEM------EALDKQYPQFGFAKHKGYP 175
>TIGR_CMR|VC_2246 [details] [associations]
symbol:VC_2246 "ribonuclease HII" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
SUPFAM:SSF53098 GO:GO:0004540 GO:GO:0004523 EMBL:U30472
eggNOG:COG0164 InterPro:IPR024567 PANTHER:PTHR10954 KO:K03470
OMA:NRCPKLA ProtClustDB:PRK00015 HAMAP:MF_00052_B PIR:H82100
RefSeq:NP_231877.1 ProteinModelPortal:P52021 DNASU:2613168
GeneID:2613168 KEGG:vch:VC2246 PATRIC:20083535 Uniprot:P52021
Length = 206
Score = 110 (43.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + + + LN DSK L E+KR LF +++V ++
Sbjct: 21 IAGVDEVGRGPLVGDVVTAAVILDPN--RPIMGLN--DSKKLSEKKRLALFPEIQVK-AL 75
Query: 76 GWAVDIIDPREL 87
WAV P+E+
Sbjct: 76 AWAVGRCSPQEI 87
Score = 54 (24.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 153 KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG----SGYP 197
K D +S ASI+AKV RD+ + E + + FG GYP
Sbjct: 133 KGDLRVAQISAASIIAKVIRDQEM------EALDKQYPQFGFAKHKGYP 175
>TIGR_CMR|ECH_0946 [details] [associations]
symbol:ECH_0946 "ribonuclease HII" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004521 "endoribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_507735.1
ProteinModelPortal:Q2GFP8 STRING:Q2GFP8 GeneID:3927326
KEGG:ech:ECH_0946 PATRIC:20577276
BioCyc:ECHA205920:GJNR-949-MONOMER Uniprot:Q2GFP8
Length = 209
Score = 102 (41.0 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 4 EAALPKWASNP-C-IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
E + K +N C I+G+DE G G + GP+V ++ P + + T N DSK L +K
Sbjct: 7 ENEISKLINNKHCTIVGVDEVGYGSLAGPVVSAAVFFP-KHDNHI-TYNIQDSKKLTPKK 64
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSA-KMLNKNKI 97
R E++ + V W++ + + E+ +LN I
Sbjct: 65 RLEIYNI--ITPMVKWSIGLAEVHEIDQYNILNATHI 99
Score = 62 (26.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 155 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
D++ ++ ASI+AKVTRD+ + + N ++N G G
Sbjct: 136 DNISISIAAASIIAKVTRDKLMETLHIQFPQYNWNKNKGYG 176
>TIGR_CMR|GSU_0649 [details] [associations]
symbol:GSU_0649 "ribonuclease HII" species:243231
"Geobacter sulfurreducens PCA" [GO:0004521 "endoribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:NP_951706.1
ProteinModelPortal:Q74FG0 GeneID:2687304 KEGG:gsu:GSU0649
PATRIC:22024045 BioCyc:GSUL243231:GH27-659-MONOMER Uniprot:Q74FG0
Length = 217
Score = 90 (36.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
I GIDEAGRGP+ GP+V + P + L ++ DSK L +R++LF
Sbjct: 29 IAGIDEAGRGPLAGPVVAAAVILP--FGTDLPGVD--DSKKLTPARRDDLF 75
Score = 70 (29.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 152 KKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGS 194
KK DS ++ ASI+AKVTRDR + + ++ H+ +GS
Sbjct: 140 KKGDSASISIAAASIIAKVTRDRLMAEYDQLYPGYGFAEHKGYGS 184
>TIGR_CMR|DET_0780 [details] [associations]
symbol:DET_0780 "ribonuclease HII" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004523 "ribonuclease H activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS]
InterPro:IPR001352 InterPro:IPR012337 InterPro:IPR022898
Pfam:PF01351 GO:GO:0005737 GO:GO:0046872 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_181512.1
ProteinModelPortal:Q3Z8D7 STRING:Q3Z8D7 GeneID:3229884
KEGG:det:DET0780 PATRIC:21608621 BioCyc:DETH243164:GJNF-781-MONOMER
Uniprot:Q3Z8D7
Length = 211
Score = 103 (41.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRG + GP+V G + P + + DSK L EKRE L+ + V+ ++
Sbjct: 23 IAGLDEAGRGCLAGPVVAGAVIMPPRLKGDWVAM-VRDSKVLTPEKREYLYCHI-VSMAI 80
Query: 76 GWAVDIIDPREL 87
+ V ++D ++
Sbjct: 81 SFGVGVVDNTQI 92
Score = 51 (23.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 155 DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
D+L ++ ASI+AKV+RDR + E T H GY
Sbjct: 140 DALCFSIACASIIAKVSRDRLMCE--LEATYPGYHLAKHKGY 179
>TIGR_CMR|CPS_1569 [details] [associations]
symbol:CPS_1569 "ribonuclease HII" species:167879
"Colwellia psychrerythraea 34H" [GO:0004521 "endoribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470 OMA:NRCPKLA
HAMAP:MF_00052_B RefSeq:YP_268311.1 ProteinModelPortal:Q485F4
STRING:Q485F4 GeneID:3519319 KEGG:cps:CPS_1569 PATRIC:21466343
BioCyc:CPSY167879:GI48-1650-MONOMER Uniprot:Q485F4
Length = 217
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 46/166 (27%), Positives = 77/166 (46%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + L DSK L E+KR L ++K +
Sbjct: 17 CIAGVDEVGRGPLVGDVVTAAVIL--DPDNPIEGL--MDSKKLSEKKRNLLSLEIK-EKA 71
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLITR---VLNIGILLTEVYLDTVG 130
+ W++ P+E+ N ++ ++ A+ GL VL G +L
Sbjct: 72 ISWSLGRASPQEIDTL----NILHATMLAMQRAVEGLNVEPDFVLVDGNRCP-TFLCNAS 126
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
++ + K++ + VV K D+ +S ASI+AKV RD +
Sbjct: 127 ESNQQNLKIASQA-----VV--KGDARVTEISAASIIAKVARDNEM 165
>TIGR_CMR|CJE_0009 [details] [associations]
symbol:CJE_0009 "ribonuclease HII" species:195099
"Campylobacter jejuni RM1221" [GO:0004521 "endoribonuclease
activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
evidence=ISS] InterPro:IPR001352 InterPro:IPR012337
InterPro:IPR022898 Pfam:PF01351 GO:GO:0005737 GO:GO:0046872
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004523 eggNOG:COG0164 InterPro:IPR024567
PANTHER:PTHR10954 HOGENOM:HOG000100288 KO:K03470
ProtClustDB:PRK00015 HAMAP:MF_00052_B RefSeq:YP_178038.1
ProteinModelPortal:Q5HXE7 STRING:Q5HXE7 DNASU:3230665
GeneID:3230665 KEGG:cjr:CJE0009 PATRIC:20041707 OMA:GCSLANE
BioCyc:CJEJ195099:GJC0-9-MONOMER Uniprot:Q5HXE7
Length = 191
Score = 110 (43.8 bits), Expect = 0.00026, P = 0.00026
Identities = 38/118 (32%), Positives = 59/118 (50%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS- 74
++GIDEAGRG + GPM+ C + L L DSK L E+KREEL+E + N +
Sbjct: 18 LIGIDEAGRGALAGPMMMAA----CKLNKQLDGL--CDSKKLSEKKREELYEIIIKNSNY 71
Query: 75 --VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI--LLTEVYLDT 128
+ ++ + ID LS + K+ ++ L N+GI + T++ DT
Sbjct: 72 LILAFSSEQIDALGLSTCLKKGLKLIKKHFKTENNF-LYDGNTNLGINGIKTQIKADT 128
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 297 280 0.00082 115 3 11 22 0.37 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 613 (65 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.54u 0.17s 22.71t Elapsed: 00:00:01
Total cpu time: 22.54u 0.17s 22.71t Elapsed: 00:00:02
Start: Thu May 9 22:27:31 2013 End: Thu May 9 22:27:33 2013