BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022427
(297 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2
SV=2
Length = 296
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 221/297 (74%), Positives = 259/297 (87%), Gaps = 1/297 (0%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWL 180
Query: 181 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 240
EET E+++RNFGSGYPGDPETKAWL HKH +FGFPSLVRFSWGTCT+H K VEV WE
Sbjct: 181 VEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWE 240
Query: 241 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 297
+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 241 ADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2
Length = 301
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/244 (51%), Positives = 163/244 (66%), Gaps = 4/244 (1%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 251
GSGYP DP+TKAWL H +FGFP VRFSW T + K+ +V+WE E +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PE 265
Query: 252 RSGK 255
R GK
Sbjct: 266 RPGK 269
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2
SV=1
Length = 301
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 159/236 (67%), Gaps = 2/236 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 247
GSGYP DP+TKAWL H +FGFP VRFSW T + K+ V WE +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
Length = 299
Score = 258 bits (659), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 156/228 (68%), Gaps = 1/228 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 240
SGYP DP+TKAWL +H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690
PE=2 SV=1
Length = 347
Score = 257 bits (656), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 178/288 (61%), Gaps = 14/288 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 249
FGSGYPGDP T+ +LT++ ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 250 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 297
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1
Length = 299
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/243 (49%), Positives = 158/243 (65%), Gaps = 2/243 (0%)
Query: 3 SEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
S P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R
Sbjct: 17 SSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESER 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+ LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ +
Sbjct: 77 DRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+V++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F
Sbjct: 137 AQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKF 196
Query: 182 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 240
E +++ ++GSGYP DP+TKAWL H +FGFP VRFSW T S + E V WE
Sbjct: 197 VEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWE 256
Query: 241 SDE 243
E
Sbjct: 257 DSE 259
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A
PE=3 SV=1
Length = 289
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 165/257 (64%), Gaps = 10/257 (3%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ET 184
+KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ +
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQ 197
Query: 185 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWES 241
E + +FGSGYP DP +K WL ++ +FG+P+ +RFSW T + + V+ + E+
Sbjct: 198 DEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLEN 257
Query: 242 DEMDEDVSSRRSGKRQL 258
D++ + ++ K++
Sbjct: 258 DKLKQHFQENQNDKKRF 274
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2
SV=1
Length = 297
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 146/245 (59%), Gaps = 6/245 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENM 188
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ +
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200
Query: 189 HRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 247
+GSGYPGDP TK +L +FGF SLVR SW T ++ K V WE DE +
Sbjct: 201 DAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGK 260
Query: 248 VSSRR 252
S+R
Sbjct: 261 SQSKR 265
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rnh201 PE=3 SV=1
Length = 326
Score = 187 bits (475), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 143/247 (57%), Gaps = 23/247 (9%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E A
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL------ECA 232
Query: 186 ENMHR--NFGSGYPGDPETKAWLTDHKHIIFGFP-SLVRFSWGTC------TSHFKDIVE 236
R N+GSGY D T WL + IFG+ +VR+SW T S + +E
Sbjct: 233 RESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIE 292
Query: 237 VLWESDE 243
+ W D+
Sbjct: 293 IDWHEDD 299
>sp|P53942|RNH2A_YEAST Ribonuclease H2 subunit A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RNH201 PE=1 SV=1
Length = 307
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 159/287 (55%), Gaps = 20/287 (6%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHFKDI 234
+ E + GSGYP DP+T AWL ++ + G+P+ +VRFSW TC + D
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 235 ----VEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 277
+ + WE MD ++ + K QL+L + ++R +++
Sbjct: 259 SKNSIPIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rnh-201 PE=3 SV=1
Length = 317
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 138/235 (58%), Gaps = 19/235 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL----- 215
Query: 182 EETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
E + +GSGYP D + +WL + H +FG+ RFSWGT KD++E
Sbjct: 216 EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLE 266
>sp|A6VGW0|RNH2_METM7 Ribonuclease HII OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=rnhB PE=3 SV=1
Length = 239
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 125/232 (53%), Gaps = 29/232 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+IDP ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKIVIDPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEET 184
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + + IF E
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGE- 186
Query: 185 AENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 187 -------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|Q6LXH7|RNH2_METMP Ribonuclease HII OS=Methanococcus maripaludis (strain S2 / LL)
GN=rnhB PE=3 SV=1
Length = 242
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 120/229 (52%), Gaps = 23/229 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 22 IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEM 79
Query: 75 VGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+IDP + +M +N NKI L+ S S I NI I Y+D +
Sbjct: 80 CDVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSS 133
Query: 133 E-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
E +++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E
Sbjct: 134 EQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKET 186
Query: 188 MHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
GSGYP DP+TK +L ++ + P + R SW T + K+I E
Sbjct: 187 FGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>sp|A4FWE5|RNH2_METM5 Ribonuclease HII OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=rnhB PE=3 SV=1
Length = 239
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 25/230 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELY--TKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+I+P ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKVVINPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYK 181
Query: 187 NMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
GSGYP DP+TK +L ++ H G P + R SW T + K+I E
Sbjct: 182 KTFGEIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|A9A9T9|RNH2_METM6 Ribonuclease HII OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=rnhB PE=3 SV=1
Length = 239
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKI 73
Query: 72 NDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ +I P ++ +M N NKI L+ S A I NI I + +
Sbjct: 74 SEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQ 132
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
+ +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 133 SFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTF 184
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
GSGYP DP+TK +L + H G P + R SW T + K+I E
Sbjct: 185 GEIGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>sp|A6UUM1|RNH2_META3 Ribonuclease HII OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=rnhB PE=3 SV=1
Length = 277
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIIN 77
Query: 72 NDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL-------------N 116
N V + + L AK ++K N INLN+I + LI VL
Sbjct: 78 NYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQ 130
Query: 117 IGILLTEVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKV 170
E+Y+D EK + ++ + +IK + KAD Y +VS ASI+AKV
Sbjct: 131 TATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKV 190
Query: 171 TRDRTLRGWIFEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSH 230
RDR + + + ++ GSGYP D T+ +L ++ P + R SW T
Sbjct: 191 IRDRKIEEY------KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKL 244
Query: 231 FKDI 234
K I
Sbjct: 245 LKKI 248
>sp|Q0W5R8|RNH2_UNCMA Ribonuclease HII OS=Uncultured methanogenic archaeon RC-I GN=rnhB
PE=3 SV=1
Length = 224
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 16/223 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK +
Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKY 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE+
Sbjct: 67 KYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAER 119
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M + G
Sbjct: 120 FGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGEDVG 174
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
SGYP DP T ++L ++ P R SW T + D ++
Sbjct: 175 SGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>sp|O74035|RNH2_PYRKO Ribonuclease HII OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=rnhB PE=1 SV=1
Length = 228
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 112/215 (52%), Gaps = 19/215 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GSGYP DP T+A+L ++ FP +VR W T
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>sp|Q9V1A9|RNH2_PYRAB Ribonuclease HII OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnhB
PE=3 SV=1
Length = 224
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 115/215 (53%), Gaps = 19/215 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
+ G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
++V I+ P+++ + K ++NE+ ++ + + ++ + +Y+D+ AE
Sbjct: 63 --YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAE 112
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ + R K V KAD+ Y +VS ASI+AKV RDR + E + + +F
Sbjct: 113 RFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDF 166
Query: 193 GSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GSGYP DP TK WL + FP +VR +W T
Sbjct: 167 GSGYPSDPRTKKWLEEWYSKHGNFPPIVRRTWDTA 201
>sp|Q8U036|RNH2_PYRFU Ribonuclease HII OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=rnhB PE=3 SV=1
Length = 224
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 17/214 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + +
Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + I+ P E+ + N++ + + + L L I L +Y D DA +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FG
Sbjct: 114 FASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFG 167
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
SGYP DP+TK WL ++ FP +VR +W T
Sbjct: 168 SGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>sp|Q97CG6|RNH2_THEVO Ribonuclease HII OS=Thermoplasma volcanium (strain ATCC 51530 / DSM
4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rnhB PE=3 SV=2
Length = 212
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 8 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 63 SYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP
Sbjct: 114 KYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYP 167
Query: 198 GDPETKAWLTDHKHIIFGFPSLVRFSWGT 226
DP T +L S+ R W T
Sbjct: 168 SDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>sp|Q57599|RNH2_METJA Ribonuclease HII OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rnhB PE=1 SV=1
Length = 230
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 29/227 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + +
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY- 173
Query: 181 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
+ ++ + GSGYP DP+T +L D+ P + R W TC
Sbjct: 174 -----KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>sp|A2BL34|RNH2_HYPBU Ribonuclease HII OS=Hyperthermus butylicus (strain DSM 5456 / JCM
9403) GN=rnhB PE=3 SV=1
Length = 240
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 20/213 (9%)
Query: 17 MGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+GIDEAGRGPV+GPMV G C + L L DSK L R +L+ E L+V +
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDK-LVALGVRDSKQLTPVVRAKLYGEILRV--A 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + P L A +NLN++ ++ + +R+ + VY+D VG EK
Sbjct: 67 LHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEK 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
A+LS R ++ + AD YP+VS ASIVAKV RD +R ++ GS
Sbjct: 120 LAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGS 172
Query: 195 GYPGDPETKAWLT-DHKHIIFGFPSLVRFSWGT 226
GYP DPET AWL +++ P VR +W T
Sbjct: 173 GYPTDPETIAWLAEEYRRNPANPPWFVRRTWST 205
>sp|O59351|RNH2_PYRHO Ribonuclease HII OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rnhB PE=1 SV=1
Length = 220
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPV+GP+V G + L + DSK L +RE+LF L ++
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V ++ P+E+ + + N++ A + + ++ I ++Y+D+ D ++
Sbjct: 62 DYYVLLVTPKEIDERHHSMNELE--------AEKFVVALNSLRIKPQKIYVDSADVDPKR 113
Query: 135 YQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + V+++ KAD+ Y +VS ASI+AKVTRDR + E + + FG
Sbjct: 114 FASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGEFG 167
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
SGYP DP TK WL ++ FP +VR +W T
Sbjct: 168 SGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETA 201
>sp|Q8TPF4|RNH2_METAC Ribonuclease HII OS=Methanosarcina acetivorans (strain ATCC 35395 /
DSM 2834 / JCM 12185 / C2A) GN=rnhB PE=3 SV=1
Length = 223
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 114/225 (50%), Gaps = 30/225 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + I P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GFFILEITPAQIDE---LRKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ I+ + +AD++YPVVS ASI+AKV RD + EE +
Sbjct: 114 FAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE-----LIEEIKK 168
Query: 187 NMHRNFGSGYPGDPETKA----WLTDHKHIIFGFPSLVRFSWGTC 227
+FGSGYP DP+TKA W +H FP +VR SW T
Sbjct: 169 EWSVDFGSGYPSDPKTKAFLLKWGKEHDG---KFPEIVRQSWQTV 210
>sp|P57673|RNH2_THEAC Ribonuclease HII OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rnhB
PE=3 SV=1
Length = 212
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 20/209 (9%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV +
Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRY 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I+ P++L+ M + +LN+I D + L+ ++ VY+D E+
Sbjct: 66 R--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQ 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP
Sbjct: 115 EIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYP 168
Query: 198 GDPETKAWLTDHKHIIFGFPSLVRFSWGT 226
DP T +L + +VR W T
Sbjct: 169 SDPRTIDFLKKYLKENQDPSEIVRIHWST 197
>sp|C6A1I4|RNH2_THESM Ribonuclease HII OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=rnhB PE=3 SV=1
Length = 224
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 29/218 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S + L DSK L +KREELFE +
Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DA 132
++++D ELS + ++K + +N D + +VLN + I VY+D +
Sbjct: 57 -IELVDDYFILELSPEDIDKREGTMN----DFEVENFAKVLNSLKIKPDLVYIDAADVNE 111
Query: 133 EKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E++ + ++ +P I + KADS Y V+ ASI+AKVTRD+ + E + ++
Sbjct: 112 ERFGIVVREKLSFYPKI--IAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIY 163
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
N GSGYP DP T+ +L ++ FP +VR SW T
Sbjct: 164 GNIGSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTL 201
>sp|A6UQ18|RNH2_METVS Ribonuclease HII OS=Methanococcus vannielii (strain SB / ATCC 35089
/ DSM 1224) GN=rnhB PE=3 SV=1
Length = 244
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 21/234 (8%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K + I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE +
Sbjct: 18 KILNEKIILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNI 77
Query: 69 LKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+N+ ++ P ++ M N NKI L+ S S + N+ I +
Sbjct: 78 --INECFEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSS 134
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+++AKL + ++ + KAD Y +VS ASI+AKVTRD + + E
Sbjct: 135 SEQSFLNQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEE---- 188
Query: 187 NMHRNFGSGYPGDPETKAWL----TDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 236
+ GSGYPGDP+TK +L +HK + P + R SW T K+ E
Sbjct: 189 --FGDIGSGYPGDPKTKEFLKRFVKEHKKL----PKIARGSWATSKKLLKEFEE 236
>sp|Q8PTA3|RNH2_METMA Ribonuclease HII OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM
3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnhB PE=3
SV=1
Length = 220
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + + P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GYFIFEVSPSQIDE---LRKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ IK V +AD++YPVVS ASI+AKV RD + EE
Sbjct: 114 FAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKR 168
Query: 187 NMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTC 227
+FGSGYP DP+T+ +L K FP +VR SW T
Sbjct: 169 EWCIDFGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQTV 210
>sp|Q468N6|RNH2_METBF Ribonuclease HII OS=Methanosarcina barkeri (strain Fusaro / DSM
804) GN=rnhB PE=3 SV=1
Length = 224
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ V + P ++ + + +NEI + ++VL + +Y D +AE+
Sbjct: 62 GFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ + +++ I+ + +AD+ YPVVS ASI+AKV RD + EE +
Sbjct: 114 FATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKK 168
Query: 187 NMHRNFGSGYPGDPETKAWLTD-HKHIIFGFPSLVRFSWGTC 227
+FGSGYP DP+TK +L + K FP +VR SW T
Sbjct: 169 EWGLDFGSGYPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQTV 210
>sp|Q12YN9|RNH2_METBU Ribonuclease HII OS=Methanococcoides burtonii (strain DSM 6242)
GN=rnhB PE=3 SV=1
Length = 213
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 36/227 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAG+GPV+GPM G + L L ADSK L ++R L +K +
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYAD 61
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV-GDA 132
GW V + P ++ K+++ N I VL G ++ E+ D + DA
Sbjct: 62 GWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADA 106
Query: 133 -----EKYQAKL----SQRFPSIKF--VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWI 180
E++ +L ++ P + V+SK AD L+PVVS ASI+AKV RD +
Sbjct: 107 ADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDE-----L 161
Query: 181 FEETAENMHRNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
E+ +M + GSGYP DP+TK +L + FP +VR SW T
Sbjct: 162 IEKIKVDMGVDIGSGYPSDPKTKKFLENWYRENSSFPDIVRHSWKTA 208
>sp|Q9YET5|RNH2_AERPE Ribonuclease HII OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=rnhB PE=3 SV=2
Length = 225
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 26/219 (11%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRG ++G +V + L +L DSK L R EL+ ++
Sbjct: 3 IVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREI---SG 59
Query: 75 VGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
VG+ V+ I P E+ + N+N + + +++R+++ +G+ + V +D GD
Sbjct: 60 VGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDV 112
Query: 133 EKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ + L++ +V +KADS YPVVS ASIVAKV RD L + M+
Sbjct: 113 QGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------QVLRRMYGV 166
Query: 192 FGSGYPGDPETKAWLTDHKHIIFG---FPSLVRFSWGTC 227
GSGYP DPET+ W+ + +F P ++R++W T
Sbjct: 167 RGSGYPSDPETREWVRE----VFARGEAPRVIRYTWSTV 201
>sp|Q2FP80|RNH2_METHJ Ribonuclease HII OS=Methanospirillum hungatei (strain JF-1 / DSM
864) GN=rnhB PE=3 SV=1
Length = 212
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 105/217 (48%), Gaps = 28/217 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C+ L L ADSK L + RE++ D+K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAV--GCTDMDDLIALGVADSKKLSSKSREKISADIKAQFPF 59
Query: 76 GWAVDII-DPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVG- 130
+ D EL + + +NEI SH A+ I + T Y+D
Sbjct: 60 SIVIRTAHDIDEL------RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDV 105
Query: 131 DAEKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E+Y+ +S P V KADSL+P VS ASI+AKV RDR I EE ++ +
Sbjct: 106 SEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-Y 159
Query: 190 RNFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGT 226
+ GSGYP DP T +LT + P + R SW T
Sbjct: 160 GDIGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWET 196
>sp|A1RYM0|RNH2_THEPD Ribonuclease HII OS=Thermofilum pendens (strain Hrk 5) GN=rnhB PE=3
SV=1
Length = 213
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 28/222 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+LGPMV + CP L + DSK L +R L + SV
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIP---SV 60
Query: 76 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA- 132
G +V +++P+E+ + + NLN + LI VL+ G L VY+D+
Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDSPDPVP 119
Query: 133 ----EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E+ +A L + ++ V AD Y +V ASIVAK TRD + +
Sbjct: 120 SRFEERVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEIINAL------KKT 170
Query: 189 HRNFGSGYPGDPET----KAWLTDHKHIIFGFPSLVRFSWGT 226
+ +FGSGYP DP T + W+ H P + R W T
Sbjct: 171 YGDFGSGYPSDPRTLRFAEEWVRKHGE----PPPIARKEWAT 208
>sp|Q74MH3|RNH2_NANEQ Ribonuclease HII OS=Nanoarchaeum equitans (strain Kin4-M) GN=rnhB
PE=3 SV=1
Length = 200
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 23/207 (11%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V +
Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY 61
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+I+ P + ++ NLNE+ LI + + ++ + +D+ E Y+
Sbjct: 62 --EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKL 109
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ + +++K P+V+ ASIVAKV RDR + E+ E +FGSGYP
Sbjct: 110 RILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYP 164
Query: 198 GDPETKAWLTDHKHIIFGFPSLVRFSW 224
D T+ L + I+ + +R W
Sbjct: 165 SDKRTRKALEQYYRILKPY---IRKKW 188
>sp|Q97W56|RNH2_SULSO Ribonuclease HII OS=Sulfolobus solfataricus (strain ATCC 35092 /
DSM 1617 / JCM 11322 / P2) GN=rnhB PE=3 SV=1
Length = 212
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 106/213 (49%), Gaps = 18/213 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + + + L + DSK L E+RE+LF D+ N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + P E+ + NLN++++D+ +I + + + V D VGD EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPV 111
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+L + K V KAD L+ S ASI+AKV RD + + + ++ +FGSGY
Sbjct: 112 IELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNYI------DELKQVYGDFGSGY 164
Query: 197 PGDPETKAWLTDHKHIIFGFPSLVRFSWGTCTS 229
P DP T WL P ++R SW S
Sbjct: 165 PADPRTIKWLKSFYEKNPNPPPIIRRSWKILRS 197
>sp|B6YVT5|RNH2_THEON Ribonuclease HII OS=Thermococcus onnurineus (strain NA1) GN=rnhB
PE=3 SV=1
Length = 227
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 23/217 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPVLGPMV + L L DSK L ++RE LF D +
Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLF------DEI 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VGDA- 132
+D EL + ++ + LNE ++ + + ++ + VY+D V +A
Sbjct: 57 VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVKEAR 113
Query: 133 --EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E+ +AKL F + + KAD + VS ASI+AKV RDR + E ++ +
Sbjct: 114 FGEEIKAKLD--FEA-DIIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYG 164
Query: 191 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GSGYP DP T+ +L ++ FP +VR +W T
Sbjct: 165 EIGSGYPSDPRTRTFLEEYYRKHGEFPPIVRRTWKTL 201
>sp|Q974Z3|RNH2_SULTO Ribonuclease HII OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=rnhB PE=3 SV=1
Length = 208
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 109/210 (51%), Gaps = 18/210 (8%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPM+ + + L + DSK L +RE+LF D+ + S
Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYS 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 61 EGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKV 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ ++ + V + AD + S ASI+AKV RD + +T ++ + +FGS
Sbjct: 112 VEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGS 163
Query: 195 GYPGDPETKAWLTDHKHIIFGFPSLVRFSW 224
GYP DP+T W+ + P ++R SW
Sbjct: 164 GYPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>sp|Q2NEI6|RNH2_METST Ribonuclease HII OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rnhB PE=3 SV=1
Length = 212
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 18/213 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+V G + + L + DSK L +KR + +K +
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KI 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
II P + N N INLNEI + + I +++ Y+D + E +
Sbjct: 66 AQFKTIIIPAHTIDEKRN-NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENR 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ K+ + P++ V KAD Y +VS ASI+AKV RD+ L E + + GS
Sbjct: 120 FHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGS 173
Query: 195 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GYP D T +L K+ FP ++R +W T
Sbjct: 174 GYPSDKNTINYLKTIKN--NQFPPIIRKTWKTI 204
>sp|Q4JA60|RNH2_SULAC Ribonuclease HII OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rnhB
PE=3 SV=1
Length = 212
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPMV + ++ + L+ + DSK L +KRE LF V
Sbjct: 2 ILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILE 58
Query: 75 VGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 130
+A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+A + ++ S + V AD Y VS ASI+AKV RD + + +
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYG 159
Query: 191 NFGSGYPGDPETKAWLTD--HKHIIFGFPSLVRFSW 224
+FGSGYPGD +T W+ D + + P ++R SW
Sbjct: 160 DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>sp|O29634|RNH2_ARCFU Ribonuclease HII OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rnhB PE=1
SV=1
Length = 205
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 60 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
++ + ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY
Sbjct: 111 SRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGY 164
Query: 197 PGDPET----KAWLTDHKHIIFGFPSLVRFSWGTCTS 229
DP T K W+ + PS VR W T ++
Sbjct: 165 ASDPRTREVLKEWIASGR-----IPSCVRMRWKTVSN 196
>sp|A5ULV6|RNH2_METS3 Ribonuclease HII OS=Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861) GN=rnhB PE=3 SV=1
Length = 207
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 102/214 (47%), Gaps = 18/214 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRG VLGP+V + P L + DSK L +R L LK
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLK--KMF 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + +I +++ + + INLNEI IG+ + N+ + +D V AE+
Sbjct: 61 EYDLVVISAQDIDN--MRADGINLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAER 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFG 193
+Q KL+ + V KAD Y VS ASI+AK RD I E + + G
Sbjct: 114 FQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQERD----AHIAEINKDYIKMGGIG 168
Query: 194 SGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
SGYP DP TK +LT+ + P VR SW T
Sbjct: 169 SGYPSDPITKKFLTNFTY--DEMPDFVRKSWATV 200
>sp|O27102|RNH2_METTH Ribonuclease HII OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=rnhB PE=3 SV=1
Length = 206
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-- 190
E+ + ++ F I+ AD+ Y V+ ASI+AKV RD + E+ + +R
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI------ESIQKKNRKL 165
Query: 191 -NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
+ GSGYP DP T+ +L + P VR SW T
Sbjct: 166 GDIGSGYPSDPRTREFLESFTY--DELPDFVRRSWATV 201
>sp|B1YB67|RNH2_PYRNV Ribonuclease HII OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM
9278 / V24Sta) GN=rnhB PE=3 SV=1
Length = 198
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 25/210 (11%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDSVG 76
G+DEAGRGPV+GPMV + LA L DSK L E+RE L++ L+ D V
Sbjct: 7 GVDEAGRGPVVGPMVIAVV---VGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVN 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V ++P + + + +N E+ + + + I + +VY D + +
Sbjct: 64 YVV--VEPAVVDTYVW-RGLLNALELDYTAKL--------IELCPADVYYVDSPDVDPRR 112
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+ F + + VV+ P V+ ASIVAKV RDR L + +E +FGSGY
Sbjct: 113 YGSALEFITGRRVVAMHKGESVPQVAAASIVAKVVRDR-LVALLKKEVG-----DFGSGY 166
Query: 197 PGDPETKAWLTDHKHIIFGFPSLVRFSWGT 226
P DP T+ WL + P VR+SW T
Sbjct: 167 PSDPRTREWLKWGRLP----PECVRWSWRT 192
>sp|Q3IRF6|RNH2_NATPD Ribonuclease HII OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=rnhB PE=3 SV=1
Length = 212
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAG+GPV+G M + P DSK L +++RE L + L+ D +
Sbjct: 4 LVGVDEAGKGPVVGSMFVAAVRAPTEALPD----GIDDSKRLTDDRREALADRLRDADRI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV P ++ + N+N+++ + + V G E L GD +
Sbjct: 60 DVAVVECQPADI-------DDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVDA- 107
Query: 136 QAKLSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ + R + + AD +V ASI+AK R+R + E +
Sbjct: 108 -GRFADRVAAAATLDVSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYG 160
Query: 191 NFGSGYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GSGYP DP TKA+L + GFP VR SW TC
Sbjct: 161 AVGSGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTC 197
>sp|Q5UXT4|RNH2_HALMA Ribonuclease HII OS=Haloarcula marismortui (strain ATCC 43049 / DSM
3752 / JCM 8966 / VKM B-1809) GN=rnhB PE=3 SV=1
Length = 211
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 21/213 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M DSK ++ E+RE L ++++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 59 GIA-------EISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + + AD +V ASI+AKV RD + E AE + + GS
Sbjct: 110 GRRVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGS 163
Query: 195 GYPGDPETKAWLTDHKHIIFGFPSLVRFSWGTC 227
GYP DP T+ +L D+ P+ R SW TC
Sbjct: 164 GYPSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>sp|A7I9P7|RNH2_METB6 Ribonuclease HII OS=Methanoregula boonei (strain 6A8) GN=rnhB PE=3
SV=1
Length = 213
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + + + DSK L +RE LF +K V
Sbjct: 2 ICGVDEAGKGSVLGPMVIAGV--GVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
A +I E+ A + ++ LN + +I ++ + ++ AE
Sbjct: 60 --ATVVISAAEIDA---FRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETV 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ LS + V ADS YPVVS ASIVAKVTRDR + + GSG
Sbjct: 115 RGYLSS---PCEIVSEHHADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSG 165
Query: 196 YPGDPETKAWLTDH--KHIIFGFPSLVRFSWGTCTS 229
YP DPET A+L + +H I P + R SW T ++
Sbjct: 166 YPSDPETIAYLNAYIDEHRI--PPPIARKSWKTVST 199
>sp|Q6KZK4|RNH2_PICTO Ribonuclease HII OS=Picrophilus torridus (strain ATCC 700027 / DSM
9790 / JCM 10055 / NBRC 100828) GN=rnhB PE=3 SV=1
Length = 199
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 37/227 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF--ADSKTLKEEKREELFEDLKVN 72
C+ GIDEAGRGPV+GPMV + C +NF DSK L KR +F D+
Sbjct: 2 CVCGIDEAGRGPVIGPMVMA-MVCA-------DDINFYVNDSKLLTRNKRSLIFNDVS-- 51
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ II+P E+ + K +LN + A LI + ++Y+D
Sbjct: 52 -GLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILKA-----ECEKIYIDCFDVN 102
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E ++ + + + AD +VS ASI+AKV RD + E ++++ +F
Sbjct: 103 ESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------EKLKSIYGDF 156
Query: 193 GSGYPGDPETKAWLTDHKHIIF---GFPSLVRFSWGTCTSHFKDIVE 236
GSGYP DP+T +L +H I ++VR W T +K++V+
Sbjct: 157 GSGYPSDPKTLRFL---EHSIINHDNIDNIVRKEWKT----YKNLVQ 196
>sp|Q8ZXL6|RNH2_PYRAE Ribonuclease HII OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2
/ DSM 7523 / JCM 9630 / NBRC 100827) GN=rnhB PE=3 SV=1
Length = 212
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + + DSK L RE ++E L+V
Sbjct: 2 IGGIDEAGRGPVIGPMVIAIV---VGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAAC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V I+P E+ A +++ +N E+ + + + I + E Y D
Sbjct: 59 VNYVV--IEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNP 107
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + F + K V++ P V+ ASIVAKV RDR ++ + +E +FGS
Sbjct: 108 KRYESGLVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQ-LLKKEVG-----DFGS 161
Query: 195 GYPGDPETKAWLTDHKHIIFGFPS-LVRFSWGTCTSHF 231
GYP DP T L + + PS +R+ W T
Sbjct: 162 GYPSDPRTLQRLREGR-----MPSECIRWQWKTVGGRI 194
>sp|A8MAH5|RNH2_CALMQ Ribonuclease HII OS=Caldivirga maquilingensis (strain ATCC 700844 /
DSMZ 13496 / JCM 10307 / IC-167) GN=rnhB PE=3 SV=1
Length = 209
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 27/213 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + S + + DSK L R L++ L V+ +
Sbjct: 10 GIDEAGRGPVIGPMVIAIVGWSNSEAEGIGV---KDSKQLTPSGRSRLYK-LIVSKAPCV 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I++P E+ + N+ LNE+ LI + T VY+D+ D +
Sbjct: 66 RHVIVEPSEIDYYV---NRGLLNELEAIKMSELIKACSGV----TRVYVDS-PDPNPSRF 117
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
+ ++ +V AD P+VS ASIVAKV RD + +ET + +FGSGYP
Sbjct: 118 RGFINVKDVELIVLNHADESIPLVSAASIVAKVIRDTIISR--LKET----YGDFGSGYP 171
Query: 198 GDPET----KAWLTDHKHIIFGFPSLVRFSWGT 226
DP T + W+ + P +VR SW T
Sbjct: 172 SDPRTISALRRWINNGT-----LPPIVRRSWRT 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,875,724
Number of Sequences: 539616
Number of extensions: 4546619
Number of successful extensions: 13258
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 11740
Number of HSP's gapped (non-prelim): 1017
length of query: 297
length of database: 191,569,459
effective HSP length: 117
effective length of query: 180
effective length of database: 128,434,387
effective search space: 23118189660
effective search space used: 23118189660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)